Citrus Sinensis ID: 018352

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQDNEEPGWRDDGQNVLAEPPPPLSAPVPAPHGLGKISEQKGILGPGPADLRFSEAL
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHccccEEEEEEccHHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHcccccEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEccccccccccccEEEEEEccccccccccccHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHcccccccccEEEHHHEEHEccccHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHcHHcccccccccccccccccccEEEEEEEcccccccccccEEEEEcHHcccccccEEEcHHHHHHHHHHcccEEEEEccHHHHHHHcHcccccHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcc
Coil and Loop (DISEMBL)
msvlpiprselthhRLYEFAKTALIKiyshpyvtvcdlycgagvdvdKWETALIANYIgidvatsgigearDTWENQRKNFIAEffeadpcaenFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSllkpggyflgitpdsSTIWAKYQKNVEAyhnrsssmkpnlvpncirsesyvITFEveeekfplfgkKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMsagpnlidprgrllprsydvlGLYStfifqkpdpdvapplatpllqdneepgwrddgqnvlaepppplsapvpaphglgkiseqkgilgpgpadlrfseal
Flexible Loop (DISEMBL)
msvlpiprseltHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHnrsssmkpnlvpncIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQDNEEPGWRDDGQNVLAEPPPPLSAPVPAPHGLGKISEQKGILGPGPADLRFSEAL
Low Complexity Region (SEG)
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQDNEEPGWRDDGQNvlaepppplsapvpapHGLGKISEQKGILGPGPADLRFSEAL
Disordered region (IsUnstruct)
**********LTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHN*******NLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQK**********************************************************************
Disordered Region (DISOPRED)
**********LTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALF*********************SYDVLGLYSTFIFQ********************************************************ILGPGPADLRFS*A*
Disordered Region (DISEMBL)
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQDNEEPGWRDDGQNVLAEPPPPLSAPVPAPHGLGKISEQKGILGPGPADLRFSEAL
Disordered Region (DISPRO)
*SVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEA******S****LVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPD***********************************P****H*LGKISEQKGILGPGPADLRFS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQDNEEPGWRDDGQNVLAEPPPPLSAPVPAPHGLGKISEQKGILGPGPADLRFSEAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	357	2.2.26 [Sep-21-2011]
Q5HZ60	354	mRNA cap guanine-N7 methy	yes	no	0.988	0.997	0.664	1e-139
Q6K833	339	mRNA cap guanine-N7 methy	yes	no	0.907	0.955	0.626	1e-126
Q6Z9U7	369	mRNA cap guanine-N7 methy	no	no	0.711	0.688	0.309	3e-23
Q9VJQ4	427	mRNA cap guanine-N7 methy	yes	no	0.563	0.470	0.290	9e-22
Q1MTD3	400	mRNA cap guanine-N7 methy	yes	no	0.666	0.595	0.251	5e-20
Q9LHQ7	370	mRNA cap guanine-N7 methy	no	no	0.591	0.570	0.316	1e-19
Q9I8S2	402	mRNA cap guanine-N7 methy	N/A	no	0.554	0.492	0.271	4e-18
Q28FT4	405	mRNA cap guanine-N7 methy	yes	no	0.551	0.486	0.268	2e-17
P32783	436	mRNA cap guanine-N7 methy	yes	no	0.605	0.495	0.311	8e-17
Q6CKI0	426	mRNA cap guanine-N7 methy	yes	no	0.596	0.5	0.324	9e-17

>sp|Q5HZ60|MCES2_ARATH mRNA cap guanine-N7 methyltransferase 2 OS=Arabidopsis thaliana GN=At3g52210 PE=2 SV=1

 Score =  493 bits (1269), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/358 (66%), Positives = 286/358 (79%), Gaps = 5/358 (1%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS   + + E +HHRL++FAKTA+I I++HPY TVC+LYCG   + DKWE A I +YIGI
Sbjct: 1   MSGFVVSKPEQSHHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           D  +SGI   R+ WE+QRKN+  EFFEADP  ++FE Q+Q+K  QADLV C++HLQ+CFE
Sbjct: 61  DT-SSGISSVREAWESQRKNYDVEFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFE 119

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE ARRLL NV+ LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS + KPN+ PN IR
Sbjct: 120 TEESARRLLTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGA-KPNVFPNYIR 178

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFE+EEEKFPLFGK+YQLKF+ D ++E  CLVHFPSLIRLAREAGLE+VEIQ+L
Sbjct: 179 SESYMITFELEEEKFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSL 238

Query: 241 NEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPL 300
            +FYDDNRA FA +LM+AGPN +DPRG+LLPR++D+LGLY+TFIFQKPDPD+ PPL TP+
Sbjct: 239 TDFYDDNRAQFASLLMNAGPNFVDPRGKLLPRAFDLLGLYATFIFQKPDPDIEPPLTTPI 298

Query: 301 LQDNEEPGWRDDGQNVLAEPPPPLSAPVPAP-HGLGKISEQKGILGPGPADLRFSEAL 357
               E     D+ +  +       SAP   P  GLGKI EQKGILGPGPADLRFSEA+
Sbjct: 299 --PFESSNNHDERELPVITVITDASAPAEDPSQGLGKIVEQKGILGPGPADLRFSEAI 354

mRNA capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 5EC: 6

>sp|Q6K833|MCES2_ORYSJ mRNA cap guanine-N7 methyltransferase 2 OS=Oryza sativa subsp. japonica GN=Os02g0780600 PE=2 SV=1

 Score =  451 bits (1161), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/351 (62%), Positives = 258/351 (73%), Gaps = 27/351 (7%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
           HHRLYEFAKTALIKI++ PY TVCDLYC  GVD DKW  A I +YIGID + SG+ +AR+
Sbjct: 6   HHRLYEFAKTALIKIFAFPYATVCDLYCDGGVDTDKWGDAQIGHYIGIDASASGVNDARE 65

Query: 73  TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV 132
            WE+++K F +EF E DP A++FE QMQEK  QAD+VCC QHLQ+CFE+EE A++LL NV
Sbjct: 66  LWESRKKLFTSEFIELDPSADDFEAQMQEKGIQADIVCCMQHLQLCFESEEHAQKLLNNV 125

Query: 133 SSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE 192
           SSLLKPGGYF+GI PDSSTIW KYQKNVEA HN+        VPN IRSE+YVITFEVEE
Sbjct: 126 SSLLKPGGYFVGIIPDSSTIWTKYQKNVEASHNKGLKT----VPNSIRSENYVITFEVEE 181

Query: 193 EKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFA 252
           EKFP FGKKYQLKFAN+   E  CLVHFPS +RLAREAGLEYVEIQNL EFYDDNR  FA
Sbjct: 182 EKFPFFGKKYQLKFANESMFENHCLVHFPSFMRLAREAGLEYVEIQNLTEFYDDNRTQFA 241

Query: 253 GMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQD---NEEPGW 309
            +L   G +L+DPRG+L+ RS+D+LGLYSTF+FQKPDPD  PP+ TP L D   ++E  W
Sbjct: 242 PLLGGYGSSLVDPRGKLVARSFDILGLYSTFVFQKPDPDAMPPIVTPELHDPENDQEEEW 301

Query: 310 -------RDDGQNVLAEPPPPLSAPVPAPHGLGKISEQKGILGPGPADLRF 353
                   DDG+    +  PP                +KGILGPGPAD+R 
Sbjct: 302 LWTQQASMDDGRVSRTDILPP-------------ADNEKGILGPGPADMRL 339

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q6Z9U7|MCES1_ORYSJ mRNA cap guanine-N7 methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os08g0180000 PE=2 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 141/291 (48%), Gaps = 37/291 (12%)

Query: 15  RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR--- 71
           +L  + K+ LI++Y+HP   V DL CG G D+ KW+ A +  Y+G+D+A   I +     
Sbjct: 68  KLNNWIKSVLIQLYAHPGDCVLDLACGKGGDLIKWDKAKVGYYVGVDIAEGSIKDCMTRY 127

Query: 72  --DTWENQRKNFIAEFFEADPCAENFETQMQEKANQA---DLVCCFQHLQMCFETEERAR 126
             DT + +RK F   F     CA+ +E ++ E   +    D+  C   L   + TE RAR
Sbjct: 128 NGDTDQQRRKKF--SFPARLICADCYEARLDEHLYEDAPFDICSCQFALHYSWSTEARAR 185

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI 186
           + L NVS+LL+PGG F+G  PD++ I  + ++        +  M+         +  Y I
Sbjct: 186 QALANVSALLRPGGVFIGTMPDANVIIKRLRE--------TDGME-------FGNGVYWI 230

Query: 187 TF--EVEEEKFPL---FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241
           +F  E  E+KFP    FG KY+    + +    + +V F     LA E  LE V  +N +
Sbjct: 231 SFGEEYAEKKFPASRPFGIKYKFHLEDAVDC-PEWVVPFHLFKLLAEEYDLELVLTKNFH 289

Query: 242 EFYDD--NRALFAGMLMSAGPNLIDPR---GRLLPRSYDVLGLYSTFIFQK 287
           EF  +   +  FA ++   G  L D R     L    ++V  LY  F+ +K
Sbjct: 290 EFVHEYLQKPEFAELMRRLGA-LGDGRQDQSTLSQDEWEVAYLYLAFVLRK 339

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9VJQ4|MCES_DROME mRNA cap guanine-N7 methyltransferase OS=Drosophila melanogaster GN=l(2)35Bd PE=1 SV=2

 Score =  104 bits (260), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 23/224 (10%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--QR-------KNFIA 83
           + V D+ CG G D+ KWE A I++ I  D+A   + + +  +++  QR         F A
Sbjct: 137 LRVLDMCCGKGGDLLKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRSEKSKFANKFTA 196

Query: 84  EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
           EFF  D        + ++ + Q +LV C      CFE+  +A  +++N +  LKPGG+F+
Sbjct: 197 EFFACDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAECLKPGGFFI 256

Query: 144 GITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQ 203
              PD+  I  +          R++        N +    Y I F+ E +  PLFG KYQ
Sbjct: 257 ATMPDAYEIIRRL---------RAAGPDARRFGNDV----YSIEFDCETDPLPLFGAKYQ 303

Query: 204 LKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN 247
                 +    + LVHFP+L++L R+ GL+ ++     ++Y +N
Sbjct: 304 FHLEGVVDC-PEFLVHFPTLVKLGRKYGLQLLKRSTFADYYKEN 346

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q1MTD3|MCES_DANRE mRNA cap guanine-N7 methyltransferase OS=Danio rerio GN=rnmt PE=2 SV=1

 Score = 99.0 bits (245), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 56/294 (19%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-------NFIAEF 85
           VTV DL CG G D+ KW+   I   +  D+A   I + +  + + R+        F AEF
Sbjct: 122 VTVLDLGCGKGGDLLKWKKGRIDKLVCADIAAVSIEQCQQRYNDVRRRGHPNDRTFSAEF 181

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
             AD   E    ++Q+   Q D+  C       FE+E +A  +L+N    L+PGG+F+G 
Sbjct: 182 ITADCSRELLSEKLQDPELQFDVCSCQFVYHYSFESESQADTMLRNACERLRPGGFFIGT 241

Query: 146 TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLK 205
           TPD+  +  + +++                 N   +E + +TF+ + E +PLFG +Y   
Sbjct: 242 TPDAYELVKRLEES---------------DSNSFGNEVFSVTFQKKGE-YPLFGCQYDFS 285

Query: 206 FANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD------NRALFA------- 252
               ++   + LV+FP  + +A++  +  V  +   EF+++      N+ L         
Sbjct: 286 LEGVVNV-PEFLVYFPLFVEMAKKYNMRLVYKKTFKEFFEEKVKDGKNKDLMQWMQALEQ 344

Query: 253 ------GMLMSAGPNLID-------------PRGRLLPRSYDVLGLYSTFIFQK 287
                 G L S+GP   D             P G L    ++   +Y  ++F+K
Sbjct: 345 YPPDERGQLSSSGPGEYDHAKRKAADPAVRRPLGTLSKSEWEATSIYLVYVFEK 398

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9LHQ7|MCES1_ARATH mRNA cap guanine-N7 methyltransferase 1 OS=Arabidopsis thaliana GN=At3g20650 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 114/243 (46%), Gaps = 32/243 (13%)

Query: 15  RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW 74
           +L  + K+ LI++Y+ P   V DL CG G D+ KW+ A I  Y+GID+A   I + R  +
Sbjct: 68  KLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSIEDCRTRY 127

Query: 75  ------ENQRKNFIAEFFEADPCAENFETQMQ---EKANQADLVCCFQHLQMCFETEERA 125
                   +RK F   F     C + FE ++    E+    D+  C   +   + TE RA
Sbjct: 128 NGDADHHQRRKKF--SFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWTTEARA 185

Query: 126 RRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV 185
           RR L NVS+LL+PGG F+G  PD++ I  K  +  E                 I +  Y 
Sbjct: 186 RRALANVSALLRPGGVFIGTMPDANVIIKKL-REAEGLE--------------IGNSVYW 230

Query: 186 ITF--EVEEEKFPL---FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           I F  E  ++KF     FG +Y     + +    + +V F     LA E  LE V ++N 
Sbjct: 231 IRFGEEYSQKKFKSSSPFGIEYVFHLEDAVDC-PEWIVPFNVFKSLAEEYDLELVFVKNS 289

Query: 241 NEF 243
           +EF
Sbjct: 290 HEF 292

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9I8S2|MCES_XENLA mRNA cap guanine-N7 methyltransferase OS=Xenopus laevis GN=rnmt PE=2 SV=1

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 23/221 (10%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN------FIAEFF 86
           +TV DL CG G D+ KW    I+  +  D+A   + +    +++ ++       F AEF 
Sbjct: 125 ITVLDLGCGKGGDLLKWRKGGISKLVCTDIADVSVKQCEQRYKDMKRKSRNERIFEAEFL 184

Query: 87  EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
            +D   E    +  +   + D+  C       FET E+A  +L+N    L PGG+F+G T
Sbjct: 185 TSDSTKELLSEKYIDPEIKFDICSCQFVYHYSFETYEQADTMLRNACERLCPGGFFIGTT 244

Query: 147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKF 206
           PD   +     K +EA              N   ++ Y +TFE ++ K+PLFG KY    
Sbjct: 245 PDGFELV----KRLEASDT-----------NSFGNDVYTVTFE-KKGKYPLFGCKYDFSL 288

Query: 207 ANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN 247
              ++   + LV+FP L+ +A++  ++ +  +   EF+++ 
Sbjct: 289 EEVVNV-PEFLVYFPVLVEMAKKYQMKLIYKKTFREFFEEK 328

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q28FT4|MCES_XENTR mRNA cap guanine-N7 methyltransferase OS=Xenopus tropicalis GN=rnmt PE=2 SV=1

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 23/220 (10%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN------FIAEFF 86
           + V DL CG G D+ KW    I+  +  D+A   + +  + +++ ++       F AEF 
Sbjct: 128 IAVLDLGCGKGGDLLKWRKGGISKLVCTDIADVSVKQCEERYKDLKRKSRNERVFEAEFL 187

Query: 87  EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
            AD   E    +  +   + D+  C       FET E+A  +L+N    L PGG+F+G T
Sbjct: 188 TADSTKELLSEKYNDPEIKFDICSCQFVYHYSFETYEQADMMLRNACERLCPGGFFIGTT 247

Query: 147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKF 206
           PD   +     K +EA              N   ++ Y + FE ++ K+PLFG KY    
Sbjct: 248 PDGFELV----KRLEASDT-----------NSFGNDVYTVKFE-KKGKYPLFGCKYDFSL 291

Query: 207 ANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
              ++   + LV+FP L+ +A++  ++ +  +   EF+++
Sbjct: 292 EEVVNV-PEFLVYFPVLVEMAKKYQMKLIYKKTFREFFEE 330

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|P32783|MCES_YEAST mRNA cap guanine-N7 methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ABD1 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 104/231 (45%), Gaps = 15/231 (6%)

Query: 21  KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK- 79
           K  LI  Y+ P   V +L CG G D+ K+  A I+ +IGID++ + I EA   + + R  
Sbjct: 154 KYMLIDKYTKPGDVVLELGCGKGGDLRKYGAAGISQFIGIDISNASIQEAHKRYRSMRNL 213

Query: 80  NFIAEFFEADPCAENFETQMQ---EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLL 136
           ++       D   E+    ++   +     D+V     L   FETEE+ARR L NV+  L
Sbjct: 214 DYQVVLITGDCFGESLGVAVEPFPDCRFPCDIVSTQFCLHYAFETEEKARRALLNVAKSL 273

Query: 137 KPGGYFLGITPDSSTI---WAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEE 193
           K GG+F G  PDS  I     K+ K VE     +S  K     N  +   Y  T      
Sbjct: 274 KIGGHFFGTIPDSEFIRYKLNKFPKEVEKPSWGNSIYKVTFENNSYQKNDYEFT------ 327

Query: 194 KFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFY 244
               +G+ Y     + I    + +V F +L  LA E GLE V     N+F+
Sbjct: 328 --SPYGQMYTYWLEDAIDNVPEYVVPFETLRSLADEYGLELVSQMPFNKFF 376

Responsible for methylating the 5'-cap structure of mRNAs.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q6CKI0|MCES_KLULA mRNA cap guanine-N7 methyltransferase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ABD1 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 107/234 (45%), Gaps = 21/234 (8%)

Query: 21  KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK- 79
           K  LI  ++     V +L CG G D+ K+  A I+ +IGID++ + I EA   + + +  
Sbjct: 151 KYILIDKFTRAGDVVLELACGKGGDLRKYGAAGISQFIGIDISNASITEALKRYHSMKNL 210

Query: 80  NFIAEFFEADPCAENFETQMQ---EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLL 136
            +       D   E+    ++   E     D+V C   L   FETEE+ARR+L NV   L
Sbjct: 211 EYQVILITGDCFGESLGVAVESFPECRFPCDIVSCQFALHYAFETEEKARRMLLNVVKSL 270

Query: 137 KPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE---- 192
           K GGYF G  PDS  I  K  K  E      S  KP+   N I    Y +TF   E    
Sbjct: 271 KIGGYFFGTIPDSEFIRYKMNKIPE------SVEKPSW-GNSI----YKVTFSNNEYQKN 319

Query: 193 -EKFPL-FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFY 244
             +FP  FG+ Y     + I    + ++ F S   LA E G+E    +  NEF+
Sbjct: 320 GNEFPSPFGQMYTFWLEDAIDNVPEYVIPFESFRSLADEYGMELELQKGFNEFF 373

Responsible for methylating the 5'-cap structure of mRNAs.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
225449657	359	PREDICTED: mRNA cap guanine-N7 methyltra	1.0	0.994	0.699	1e-150
449449401	354	PREDICTED: mRNA cap guanine-N7 methyltra	0.991	1.0	0.717	1e-149
356516035	346	PREDICTED: mRNA cap guanine-N7 methyltra	0.949	0.979	0.718	1e-146
224109904	287	predicted protein [Populus trichocarpa]	0.803	1.0	0.815	1e-143
356507590	359	PREDICTED: mRNA cap guanine-N7 methyltra	0.969	0.963	0.700	1e-142
357463871	359	mRNA cap guanine-N7 methyltransferase [M	0.941	0.935	0.689	1e-141
42565855	354	mRNA cap guanine-N7 methyltransferase 2	0.988	0.997	0.664	1e-137
296090379	319	unnamed protein product [Vitis vinifera]	0.882	0.987	0.715	1e-137
79314795	355	mRNA cap guanine-N7 methyltransferase 2	0.991	0.997	0.662	1e-137
51968952	355	putative protein [Arabidopsis thaliana]	0.991	0.997	0.659	1e-136

>gi|225449657|ref|XP_002263006.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Vitis vinifera]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 251/359 (69%), Positives = 292/359 (81%), Gaps = 2/359 (0%)

Query: 1   MSVLPIPRS-ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIG 59
           M+ +P PR+ E THHRL+EFAKTALIKI+  PY TVCDLY GAG D DKW+ A I +YIG
Sbjct: 1   MTSIPAPRTAESTHHRLFEFAKTALIKIFVSPYATVCDLYAGAGSDADKWDEAQIGHYIG 60

Query: 60  IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF 119
           IDV++SGI   ++ WE+QRK++ A+F+E DP  EN E  +Q+K N AD+VCC QHLQ+ F
Sbjct: 61  IDVSSSGISHTKEVWESQRKSYNADFYELDPSMENLELNLQDKCNTADVVCCLQHLQLGF 120

Query: 120 ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCI 179
           E E++ RRLL NV+SLLKPGGYF GITPDSSTIWAKYQKNVEAYHNR SSMKPN+VPNCI
Sbjct: 121 ENEDKGRRLLHNVASLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRGSSMKPNIVPNCI 180

Query: 180 RSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN 239
           RSESY+ITFEVEEEKFP FGKKYQLKF+ND SAET CLVHFPSLIRLAREAGLEYVEIQN
Sbjct: 181 RSESYMITFEVEEEKFPFFGKKYQLKFSNDTSAETYCLVHFPSLIRLAREAGLEYVEIQN 240

Query: 240 LNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATP 299
           L +FYDDNRA FAGML+++GPNL+DPRGRLLPRSYDVLGLY+TFIFQK DPD+ PPL +P
Sbjct: 241 LTDFYDDNRAQFAGMLLNSGPNLVDPRGRLLPRSYDVLGLYTTFIFQKVDPDIVPPLTSP 300

Query: 300 LLQDNEEPGWRDDG-QNVLAEPPPPLSAPVPAPHGLGKISEQKGILGPGPADLRFSEAL 357
            +  +    + +     +       ++     PHGLGKISEQKGILGPGPADLRFSEA 
Sbjct: 301 FIIKDGSHNYEEASISAITVVVDEEMNGQTEPPHGLGKISEQKGILGPGPADLRFSEAF 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449401|ref|XP_004142453.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Cucumis sativus] gi|449513235|ref|XP_004164269.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Cucumis sativus]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/357 (71%), Positives = 289/357 (80%), Gaps = 3/357 (0%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS L  PR E THHRL +FAKTALIKI+SHPYVTVCDLYC  G D +KW+   I++YIGI
Sbjct: 1   MSQLVPPRGEWTHHRLCDFAKTALIKIFSHPYVTVCDLYCARGADAEKWDETQISHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           D +TSGIG+ R+ WE+Q+K + AEFFE DPC EN ETQ+++K    D VCC QHLQMCFE
Sbjct: 61  DESTSGIGQMREAWESQKKAYTAEFFEVDPCVENIETQLKDKTETVDRVCCLQHLQMCFE 120

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEERARRLL NVS+LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS+ MKPN+VPNCIR
Sbjct: 121 TEERARRLLHNVSALLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSAGMKPNIVPNCIR 180

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+I+FEVEEEKFPLFGKKYQLKFAND SAET CLVHFPS IRLAREAGLEY+EIQNL
Sbjct: 181 SESYMISFEVEEEKFPLFGKKYQLKFANDPSAETHCLVHFPSFIRLAREAGLEYIEIQNL 240

Query: 241 NEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPL 300
            EF+DD+RA  A MLM+ G N++DPRGRLLPRSYDVLGLY+TFIFQKPDPD+ PP+ TPL
Sbjct: 241 TEFFDDHRAQLADMLMNFGQNILDPRGRLLPRSYDVLGLYTTFIFQKPDPDITPPIMTPL 300

Query: 301 LQDNEEPGWRDDGQNVLAEPPPPLSAPVPAPHGLGKISEQKGILGPGPADLRFSEAL 357
           L    E  +  +    ++              GLGKISEQKGILGPGPADLRF EAL
Sbjct: 301 L---PETIYDHEEAIPVSVTVQVPVVVPLTVPGLGKISEQKGILGPGPADLRFPEAL 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516035|ref|XP_003526702.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Glycine max]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/355 (71%), Positives = 286/355 (80%), Gaps = 16/355 (4%)

Query: 9   SELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG 68
           S+ T  RLY+FAK ALI I+ HPY TVCDLYCG   D DKW  A I +YIGID  +SGI 
Sbjct: 2   SQPTQQRLYDFAKMALINIFVHPYATVCDLYCG-DADADKWAHAQIGHYIGIDAPSSGID 60

Query: 69  EARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRL 128
           + R+TWE  RK++ AEFFE DPC EN ET ++EK N  D+VCC QHLQ+CFETEE+AR+L
Sbjct: 61  QMRETWETHRKSYTAEFFELDPCTENIETHLEEKTNMTDVVCCLQHLQLCFETEEKARKL 120

Query: 129 LQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188
           L NVSSLLKPGGYFLGITPDSSTIWAKYQ+NVEAYHN+SSSMKPN+VPNCIR+E+Y+ITF
Sbjct: 121 LHNVSSLLKPGGYFLGITPDSSTIWAKYQRNVEAYHNKSSSMKPNIVPNCIRTENYMITF 180

Query: 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR 248
           EVEEEKFPLFGKKYQLKFAND+SAET CLVHFPS IRLAREAGLEYVEIQNL EFYDDNR
Sbjct: 181 EVEEEKFPLFGKKYQLKFANDVSAETYCLVHFPSFIRLAREAGLEYVEIQNLTEFYDDNR 240

Query: 249 ALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQD----- 303
           A  AG+L    PNL+DPRGRLLPRSYD LGLY+TFIFQKPDP++APP+ TPLL D     
Sbjct: 241 AQLAGLLTHYVPNLLDPRGRLLPRSYDALGLYTTFIFQKPDPEIAPPIPTPLLPDVSYNL 300

Query: 304 NEEPGWRDDGQNVLAEPPPPLSAPVPAPH-GLGKISEQKGILGPGPADLRFSEAL 357
           +E   WRDD           ++  V  P  GLGKISEQKGILGPGPADLRF EAL
Sbjct: 301 DEVTIWRDDEV---------INGHVVEPAIGLGKISEQKGILGPGPADLRFPEAL 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109904|ref|XP_002315350.1| predicted protein [Populus trichocarpa] gi|222864390|gb|EEF01521.1| predicted protein [Populus trichocarpa]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 234/287 (81%), Positives = 264/287 (91%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS  PIPR+E  HHRLYEFAK+A+IKI++HPY TVCDLYCG GVD++KW+ A I +YIGI
Sbjct: 1   MSGFPIPRTESAHHRLYEFAKSAIIKIFAHPYATVCDLYCGGGVDIEKWDAAQITHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           DVA+SGI E ++TWE+ +KN+ A+FF+ADPC+ENFETQ+QEKANQADLVCC Q+LQ+CFE
Sbjct: 61  DVASSGISEVKETWESLKKNYTADFFQADPCSENFETQLQEKANQADLVCCLQNLQLCFE 120

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE AR+LL NV+SLLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS SMKPN+VPNCIR
Sbjct: 121 TEESARKLLHNVASLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGSMKPNIVPNCIR 180

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFEVEEEKFPLFGKKYQLKFA+DISAET CLVHFPSLIRLAREAGLEYVEIQNL
Sbjct: 181 SESYMITFEVEEEKFPLFGKKYQLKFAHDISAETHCLVHFPSLIRLAREAGLEYVEIQNL 240

Query: 241 NEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQK 287
            EFYDDNR  FAGM+M+AG NL+DPRGRLLPRSYDVLGLY+TFIFQK
Sbjct: 241 TEFYDDNRTQFAGMIMNAGLNLVDPRGRLLPRSYDVLGLYTTFIFQK 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507590|ref|XP_003522547.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Glycine max]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 253/361 (70%), Positives = 285/361 (78%), Gaps = 15/361 (4%)

Query: 9   SELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG 68
           S+ T  RLY+FAK ALI I++HPY TVCDLYCG   D DKW  A I +YIGID  +SGI 
Sbjct: 2   SQSTQQRLYDFAKMALINIFAHPYATVCDLYCG-DADADKWVDAQIGHYIGIDAPSSGIE 60

Query: 69  EARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRL 128
           + R+ WE  RK++ AEFFE DPC +N ET ++EK N AD+VCC QHLQ+CFETEE+AR+L
Sbjct: 61  QMREAWEIHRKSYTAEFFELDPCTKNTETHLEEKTNVADVVCCLQHLQLCFETEEKARKL 120

Query: 129 LQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188
           L NVSSLLKPGGYFLGITPDSSTIWAKYQ+NVEAYHN+SSSMKPN+VPNCIR+E+Y+ITF
Sbjct: 121 LHNVSSLLKPGGYFLGITPDSSTIWAKYQRNVEAYHNKSSSMKPNIVPNCIRTENYMITF 180

Query: 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR 248
           EVEEEKFPLFGKKYQLKFAND+SAET CLVHFPS IRLAREAGLEYVEIQNL EFYDDNR
Sbjct: 181 EVEEEKFPLFGKKYQLKFANDVSAETHCLVHFPSFIRLAREAGLEYVEIQNLTEFYDDNR 240

Query: 249 ALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQDNEEPG 308
           A  AG+L    PNL+DPRGRLLPRSYD LGLY+TFIFQKPDP++APP+ATPLL D     
Sbjct: 241 AQLAGLLTHYVPNLLDPRGRLLPRSYDALGLYTTFIFQKPDPEIAPPIATPLLPDVSYN- 299

Query: 309 WRDDGQN----------VLAEPPPPL--SAPVPAPHGLGKISEQKGILGPGPADLRFSEA 356
             D+  N          V   P   +     V    GLGKISEQKGILGPGPADLRF EA
Sbjct: 300 -LDEVINIYYRLFYLDLVTIRPDDEIINGHAVEPAIGLGKISEQKGILGPGPADLRFPEA 358

Query: 357 L 357
           L
Sbjct: 359 L 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463871|ref|XP_003602217.1| mRNA cap guanine-N7 methyltransferase [Medicago truncatula] gi|355491265|gb|AES72468.1| mRNA cap guanine-N7 methyltransferase [Medicago truncatula]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/351 (68%), Positives = 278/351 (79%), Gaps = 15/351 (4%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
           H RLY+FAK ALIKI++HPY TVC+LYCG   D  KW  + IANYIGIDV++S I + R 
Sbjct: 18  HQRLYDFAKMALIKIFAHPYATVCELYCGEASDAHKWLDSQIANYIGIDVSSSAIQQIRQ 77

Query: 73  TW-ENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQN 131
           +  +N  K+    FF  DP  E+ E ++++K N  D VCC QHLQ+CFETEE+ARRLLQN
Sbjct: 78  SLGDNNNKSCTTHFFHLDPSTESIEIRLEDKTNTVDFVCCLQHLQLCFETEEKARRLLQN 137

Query: 132 VSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191
           VSSLLKPGGYFLGITPDSSTIWAKYQKNVE+YHNRSSSMKPN+VPNCIR+E+Y I FEVE
Sbjct: 138 VSSLLKPGGYFLGITPDSSTIWAKYQKNVESYHNRSSSMKPNIVPNCIRTENYTIAFEVE 197

Query: 192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALF 251
           EEKFPLFGKKYQLKFAND+SAET CLVHFPSLIRLAREAGLEYVEIQNL EFYDDNRA  
Sbjct: 198 EEKFPLFGKKYQLKFANDVSAETHCLVHFPSLIRLAREAGLEYVEIQNLTEFYDDNRAQL 257

Query: 252 AGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQD-----NEE 306
           AG+L +  PNL+D RG+LLPRSYDVLGLY+TFIFQKPDP++APP+ TP+LQD     +E 
Sbjct: 258 AGLLTNYAPNLLDTRGKLLPRSYDVLGLYTTFIFQKPDPEIAPPITTPILQDASYNLDEG 317

Query: 307 PGWRDDGQNVLAEPPPPLSAPVPAPHGLGKISEQKGILGPGPADLRFSEAL 357
             W D+  N            V +  GLG ISEQKGILGPGPA+LRF EAL
Sbjct: 318 TSWWDEEIN---------GHVVDSSIGLGMISEQKGILGPGPAELRFPEAL 359

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565855|ref|NP_190789.3| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana] gi|75105185|sp|Q5HZ60.1|MCES2_ARATH RecName: Full=mRNA cap guanine-N7 methyltransferase 2; AltName: Full=mRNA (guanine-N(7)-)-methyltransferase 2; AltName: Full=mRNA cap methyltransferase 2 gi|57222116|gb|AAW38965.1| At3g52210 [Arabidopsis thaliana] gi|58531336|gb|AAW78590.1| At3g52210 [Arabidopsis thaliana] gi|332645393|gb|AEE78914.1| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/358 (66%), Positives = 286/358 (79%), Gaps = 5/358 (1%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS   + + E +HHRL++FAKTA+I I++HPY TVC+LYCG   + DKWE A I +YIGI
Sbjct: 1   MSGFVVSKPEQSHHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           D  +SGI   R+ WE+QRKN+  EFFEADP  ++FE Q+Q+K  QADLV C++HLQ+CFE
Sbjct: 61  DT-SSGISSVREAWESQRKNYDVEFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFE 119

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE ARRLL NV+ LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS + KPN+ PN IR
Sbjct: 120 TEESARRLLTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGA-KPNVFPNYIR 178

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFE+EEEKFPLFGK+YQLKF+ D ++E  CLVHFPSLIRLAREAGLE+VEIQ+L
Sbjct: 179 SESYMITFELEEEKFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSL 238

Query: 241 NEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPL 300
            +FYDDNRA FA +LM+AGPN +DPRG+LLPR++D+LGLY+TFIFQKPDPD+ PPL TP+
Sbjct: 239 TDFYDDNRAQFASLLMNAGPNFVDPRGKLLPRAFDLLGLYATFIFQKPDPDIEPPLTTPI 298

Query: 301 LQDNEEPGWRDDGQNVLAEPPPPLSAPVPAP-HGLGKISEQKGILGPGPADLRFSEAL 357
               E     D+ +  +       SAP   P  GLGKI EQKGILGPGPADLRFSEA+
Sbjct: 299 --PFESSNNHDERELPVITVITDASAPAEDPSQGLGKIVEQKGILGPGPADLRFSEAI 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090379|emb|CBI40198.3| unnamed protein product [Vitis vinifera]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 226/316 (71%), Positives = 264/316 (83%), Gaps = 1/316 (0%)

Query: 1   MSVLPIPRS-ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIG 59
           M+ +P PR+ E THHRL+EFAKTALIKI+  PY TVCDLY GAG D DKW+ A I +YIG
Sbjct: 1   MTSIPAPRTAESTHHRLFEFAKTALIKIFVSPYATVCDLYAGAGSDADKWDEAQIGHYIG 60

Query: 60  IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF 119
           IDV++SGI   ++ WE+QRK++ A+F+E DP  EN E  +Q+K N AD+VCC QHLQ+ F
Sbjct: 61  IDVSSSGISHTKEVWESQRKSYNADFYELDPSMENLELNLQDKCNTADVVCCLQHLQLGF 120

Query: 120 ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCI 179
           E E++ RRLL NV+SLLKPGGYF GITPDSSTIWAKYQKNVEAYHNR SSMKPN+VPNCI
Sbjct: 121 ENEDKGRRLLHNVASLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRGSSMKPNIVPNCI 180

Query: 180 RSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN 239
           RSESY+ITFEVEEEKFP FGKKYQLKF+ND SAET CLVHFPSLIRLAREAGLEYVEIQN
Sbjct: 181 RSESYMITFEVEEEKFPFFGKKYQLKFSNDTSAETYCLVHFPSLIRLAREAGLEYVEIQN 240

Query: 240 LNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATP 299
           L +FYDDNRA FAGML+++GPNL+DPRGRLLPRSYDVLGLY+TFIFQK DPD+ PPL +P
Sbjct: 241 LTDFYDDNRAQFAGMLLNSGPNLVDPRGRLLPRSYDVLGLYTTFIFQKVDPDIVPPLTSP 300

Query: 300 LLQDNEEPGWRDDGQN 315
            +  +    + +   N
Sbjct: 301 FIIKDGSHNYEEASSN 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79314795|ref|NP_001030844.1| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana] gi|332645395|gb|AEE78916.1| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/358 (66%), Positives = 285/358 (79%), Gaps = 4/358 (1%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS   + + E +HHRL++FAKTA+I I++HPY TVC+LYCG   + DKWE A I +YIGI
Sbjct: 1   MSGFVVSKPEQSHHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
              +SGI   R+ WE+QRKN+  EFFEADP  ++FE Q+Q+K  QADLV C++HLQ+CFE
Sbjct: 61  VDTSSGISSVREAWESQRKNYDVEFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFE 120

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE ARRLL NV+ LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS + KPN+ PN IR
Sbjct: 121 TEESARRLLTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGA-KPNVFPNYIR 179

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFE+EEEKFPLFGK+YQLKF+ D ++E  CLVHFPSLIRLAREAGLE+VEIQ+L
Sbjct: 180 SESYMITFELEEEKFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSL 239

Query: 241 NEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPL 300
            +FYDDNRA FA +LM+AGPN +DPRG+LLPR++D+LGLY+TFIFQKPDPD+ PPL TP+
Sbjct: 240 TDFYDDNRAQFASLLMNAGPNFVDPRGKLLPRAFDLLGLYATFIFQKPDPDIEPPLTTPI 299

Query: 301 LQDNEEPGWRDDGQNVLAEPPPPLSAPVPAP-HGLGKISEQKGILGPGPADLRFSEAL 357
               E     D+ +  +       SAP   P  GLGKI EQKGILGPGPADLRFSEA+
Sbjct: 300 --PFESSNNHDERELPVITVITDASAPAEDPSQGLGKIVEQKGILGPGPADLRFSEAI 355

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51968952|dbj|BAD43168.1| putative protein [Arabidopsis thaliana]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/358 (65%), Positives = 284/358 (79%), Gaps = 4/358 (1%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS   + + E +HHRL++FAKTA+I I++HPY TVC+LYCG   + DKWE A I +YIGI
Sbjct: 1   MSGFVVSKPEQSHHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
              +SGI   R+ WE+QRKN+   FFEADP  ++FE Q+Q+K  QADLV C++HLQ+CFE
Sbjct: 61  VDTSSGISSVREAWESQRKNYDVGFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFE 120

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE ARRLL NV+ LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS + KPN+ PN IR
Sbjct: 121 TEESARRLLTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGA-KPNVFPNYIR 179

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFE+EEEKFPLFGK+YQLKF+ D ++E  CLVHFPSLIRLAREAGLE+VEIQ+L
Sbjct: 180 SESYMITFELEEEKFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSL 239

Query: 241 NEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPL 300
            +FYDDNRA FA +LM+AGPN +DPRG+LLPR++D+LGLY+TFIFQKPDPD+ PPL TP+
Sbjct: 240 TDFYDDNRAQFASLLMNAGPNFVDPRGKLLPRAFDLLGLYATFIFQKPDPDIEPPLTTPI 299

Query: 301 LQDNEEPGWRDDGQNVLAEPPPPLSAPVPAP-HGLGKISEQKGILGPGPADLRFSEAL 357
               E     D+ +  +       SAP   P  GLGKI EQKGILGPGPADLRFSEA+
Sbjct: 300 --PFESSNNHDERELPVITVITDASAPAEDPSQGLGKIVEQKGILGPGPADLRFSEAI 355

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
FB|FBgn0001974	427	l(2)35Bd "lethal (2) 35Bd" [Dr	0.557	0.466	0.292	4.8e-21
TAIR|locus:2083420	370	AT3G20650 "AT3G20650" [Arabido	0.731	0.705	0.285	4.8e-20
ZFIN|ZDB-GENE-041008-25	400	rnmt "RNA (guanine-7-) methylt	0.431	0.385	0.316	1.6e-18
WB|WBGene00006447	380	tag-72 [Caenorhabditis elegans	0.599	0.563	0.308	7.2e-18
UNIPROTKB|Q9XVS1	380	tag-72 "mRNA cap guanine-N7 me	0.599	0.563	0.308	7.2e-18
MGI|MGI:1915147	465	Rnmt "RNA (guanine-7-) methylt	0.431	0.331	0.295	7e-16
SGD|S000000440	436	ABD1 "Methyltransferase" [Sacc	0.605	0.495	0.316	8.4e-16
UNIPROTKB|F1MHQ5	477	RNMT "mRNA cap guanine-N7 meth	0.431	0.322	0.299	1.8e-15
POMBASE|SPCC330.10	360	pcm1 "P-TEFb-cap methyltransfe	0.725	0.719	0.258	1.2e-13
UNIPROTKB|Q61E36	378	tag-72 "mRNA cap guanine-N7 me	0.546	0.515	0.292	1.6e-12

FB|FBgn0001974 l(2)35Bd "lethal (2) 35Bd" [Drosophila melanogaster (taxid:7227)]

 Score = 251 (93.4 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 65/222 (29%), Positives = 108/222 (48%)

Query:    35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--QRKN-------FIAEF 85
             V D+ CG G D+ KWE A I++ I  D+A   + + +  +++  QR         F AEF
Sbjct:   139 VLDMCCGKGGDLLKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRSEKSKFANKFTAEF 198

Query:    86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
             F  D        + ++ + Q +LV C      CFE+  +A  +++N +  LKPGG+F+  
Sbjct:   199 FACDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAECLKPGGFFIAT 258

Query:   146 TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLK 205
              PD+  I  +          R++        N +    Y I F+ E +  PLFG KYQ  
Sbjct:   259 MPDAYEIIRRL---------RAAGPDARRFGNDV----YSIEFDCETDPLPLFGAKYQFH 305

Query:   206 FANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN 247
                 +    + LVHFP+L++L R+ GL+ ++     ++Y +N
Sbjct:   306 LEGVVDCP-EFLVHFPTLVKLGRKYGLQLLKRSTFADYYKEN 346

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2083420 AT3G20650 "AT3G20650" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 4.8e-20, P = 4.8e-20
 Identities = 85/298 (28%), Positives = 140/298 (46%)

Query:     9 SELTH-HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGI 67
             S + H  +L  + K+ LI++Y+ P   V DL CG G D+ KW+ A I  Y+GID+A   I
Sbjct:    61 SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120

Query:    68 GEARDTWEN------QRKNFIAEFFEADPCAENFETQMQ---EKANQADLVCCFQHLQMC 118
              + R  +        +RK F   F     C + FE ++    E+    D+  C   +   
Sbjct:   121 EDCRTRYNGDADHHQRRKKF--SFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYS 178

Query:   119 FETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNC 178
             + TE RARR L NVS+LL+PGG F+G  PD++ I  K ++        +  ++   + N 
Sbjct:   179 WTTEARARRALANVSALLRPGGVFIGTMPDANVIIKKLRE--------AEGLE---IGNS 227

Query:   179 IRSESYVITF--EVEEEKFPL---FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLE 233
             +    Y I F  E  ++KF     FG +Y     + +    + +V F     LA E  LE
Sbjct:   228 V----YWIRFGEEYSQKKFKSSSPFGIEYVFHLEDAVDCP-EWIVPFNVFKSLAEEYDLE 282

Query:   234 YVEIQNLNEFYDD--NRALFAGMLMSAGP--NLIDPRGRLLPRSYDVLGLYSTFIFQK 287
              V ++N +EF  +   +  F  ++   G   +  + +  L    ++   LY +F+ +K
Sbjct:   283 LVFVKNSHEFVHEYMKKPEFVELMRRLGALGDGSNDQSTLSADEWEAAYLYLSFVLRK 340

GO:0003824 "catalytic activity" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;ISS

GO:0015824 "proline transport" evidence=RCA

ZFIN|ZDB-GENE-041008-25 rnmt "RNA (guanine-7-) methyltransferase" [Danio rerio (taxid:7955)]

 Score = 191 (72.3 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
 Identities = 56/177 (31%), Positives = 86/177 (48%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-------FIAEF 85
             VTV DL CG G D+ KW+   I   +  D+A   I + +  + + R+        F AEF
Sbjct:   122 VTVLDLGCGKGGDLLKWKKGRIDKLVCADIAAVSIEQCQQRYNDVRRRGHPNDRTFSAEF 181

Query:    86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
               AD   E    ++Q+   Q D+  C       FE+E +A  +L+N    L+PGG+F+G 
Sbjct:   182 ITADCSRELLSEKLQDPELQFDVCSCQFVYHYSFESESQADTMLRNACERLRPGGFFIGT 241

Query:   146 TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             TPD+  +     K +E     S S       N   +E + +TF+ + E +PLFG +Y
Sbjct:   242 TPDAYEL----VKRLE----ESDS-------NSFGNEVFSVTFQKKGE-YPLFGCQY 282

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0006397 "mRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

WB|WBGene00006447 tag-72 [Caenorhabditis elegans (taxid:6239)]

 Score = 233 (87.1 bits), Expect = 7.2e-18, P = 7.2e-18
 Identities = 73/237 (30%), Positives = 109/237 (45%)

Query:    35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ---RKN--FIAEFFEAD 89
             V DL CG G D+ KW+ A   + +  DVA   I +A + ++     +KN  F  +F  AD
Sbjct:    58 VLDLACGKGGDLKKWDIAGAKDVVMADVADVSIQQAEERYKQMFGYKKNNIFTVQFIVAD 117

Query:    90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149
                EN E +++ K +  DLV C   L   F  E  AR  L+N   +LKPGG F+G  PD+
Sbjct:   118 CTKENLEDRIENK-DPFDLVSCQFALHYSFVDEASARIFLKNAVGMLKPGGVFIGTLPDA 176

Query:   150 STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFAND 209
               I       V +  N  +    N V  C    +Y    E+ E K PLFG K+       
Sbjct:   177 DRI-------VWSMRNGENGQFANEV--C--KITYENVEELAEGKVPLFGAKFHFSLDEQ 225

Query:   210 ISAETQCLVHFPSLIRLAREAGLEYVEIQN----LNEFYDDNRALFAGML-MSAGPN 261
             ++   + L +FP +  L  E  +E + + N    +N++ +  R L   M  +   PN
Sbjct:   226 VNCP-EFLAYFPLVKHLLEELDMELLFVHNFAEAINKWLEPGRRLLESMTGLETYPN 281

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA

UNIPROTKB|Q9XVS1 tag-72 "mRNA cap guanine-N7 methyltransferase" [Caenorhabditis elegans (taxid:6239)]

 Score = 233 (87.1 bits), Expect = 7.2e-18, P = 7.2e-18
 Identities = 73/237 (30%), Positives = 109/237 (45%)

Query:    35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ---RKN--FIAEFFEAD 89
             V DL CG G D+ KW+ A   + +  DVA   I +A + ++     +KN  F  +F  AD
Sbjct:    58 VLDLACGKGGDLKKWDIAGAKDVVMADVADVSIQQAEERYKQMFGYKKNNIFTVQFIVAD 117

Query:    90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149
                EN E +++ K +  DLV C   L   F  E  AR  L+N   +LKPGG F+G  PD+
Sbjct:   118 CTKENLEDRIENK-DPFDLVSCQFALHYSFVDEASARIFLKNAVGMLKPGGVFIGTLPDA 176

Query:   150 STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFAND 209
               I       V +  N  +    N V  C    +Y    E+ E K PLFG K+       
Sbjct:   177 DRI-------VWSMRNGENGQFANEV--C--KITYENVEELAEGKVPLFGAKFHFSLDEQ 225

Query:   210 ISAETQCLVHFPSLIRLAREAGLEYVEIQN----LNEFYDDNRALFAGML-MSAGPN 261
             ++   + L +FP +  L  E  +E + + N    +N++ +  R L   M  +   PN
Sbjct:   226 VNCP-EFLAYFPLVKHLLEELDMELLFVHNFAEAINKWLEPGRRLLESMTGLETYPN 281

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

MGI|MGI:1915147 Rnmt "RNA (guanine-7-) methyltransferase" [Mus musculus (taxid:10090)]

 Score = 175 (66.7 bits), Expect = 7.0e-16, Sum P(3) = 7.0e-16
 Identities = 52/176 (29%), Positives = 83/176 (47%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN---QRKN---FIAEFF 86
             +TV DL CG G D+ KW    I+  +  D+A   + + +  +E+   +R N   F AEF 
Sbjct:   188 ITVLDLGCGKGGDLLKWRKGRISRLVCADIADISMKQCQQRYEDMRCRRDNEHIFSAEFI 247

Query:    87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
              AD   E    + ++     D+  C       FE++ +A  +L+N    L PGGYF+G T
Sbjct:   248 TADCSKELLVEKFRDPEMYFDVCSCQFACHYSFESQVQADTMLRNACGRLNPGGYFIGTT 307

Query:   147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             P+S  +     + +EA    S             +E Y + F+ ++  +PLFG KY
Sbjct:   308 PNSFELI----RRLEASETESFG-----------NEIYTVKFQ-KKGNYPLFGCKY 347

GO:0003723 "RNA binding" evidence=ISO

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005845 "mRNA cap binding complex" evidence=ISO

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISO

GO:0080009 "mRNA methylation" evidence=ISO

SGD|S000000440 ABD1 "Methyltransferase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 219 (82.2 bits), Expect = 8.4e-16, P = 8.4e-16
 Identities = 73/231 (31%), Positives = 105/231 (45%)

Query:    21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK- 79
             K  LI  Y+ P   V +L CG G D+ K+  A I+ +IGID++ + I EA   + + R  
Sbjct:   154 KYMLIDKYTKPGDVVLELGCGKGGDLRKYGAAGISQFIGIDISNASIQEAHKRYRSMRNL 213

Query:    80 NFIAEFFEADPCAENFETQMQEKAN---QADLVCCFQHLQMCFETEERARRLLQNVSSLL 136
             ++       D   E+    ++   +     D+V     L   FETEE+ARR L NV+  L
Sbjct:   214 DYQVVLITGDCFGESLGVAVEPFPDCRFPCDIVSTQFCLHYAFETEEKARRALLNVAKSL 273

Query:   137 KPGGYFLGITPDSSTI---WAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEE 193
             K GG+F G  PDS  I     K+ K VE     +S  K     N  +   Y  T      
Sbjct:   274 KIGGHFFGTIPDSEFIRYKLNKFPKEVEKPSWGNSIYKVTFENNSYQKNDYEFTS----- 328

Query:   194 KFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFY 244
               P +G+ Y     + I    + +V F +L  LA E GLE V     N+F+
Sbjct:   329 --P-YGQMYTYWLEDAIDNVPEYVVPFETLRSLADEYGLELVSQMPFNKFF 376

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISS;IDA

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IPI

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=IPI

GO:0036265 "RNA (guanine-N7)-methylation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

UNIPROTKB|F1MHQ5 RNMT "mRNA cap guanine-N7 methyltransferase" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
 Identities = 53/177 (29%), Positives = 83/177 (46%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ----RKN---FIAEF 85
             +TV DL CG G D+ KW+   I   +  D+A   + + +  +E+     R N   F AEF
Sbjct:   199 ITVLDLGCGKGGDLLKWKKGRIDKLVCTDIADVSVRQCQQRYEDMKNRCRDNEYIFSAEF 258

Query:    86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
               AD   E    + +++    D+  C       FE+ E+A  +L+N    L PGGYF+G 
Sbjct:   259 ITADCSKELLTDKFRDREMCFDICSCQFVCHYSFESYEQADVMLRNACERLSPGGYFIGT 318

Query:   146 TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             TP+S  +     + +EA    S             +E Y + F+ + + +PLFG KY
Sbjct:   319 TPNSFELI----RRLEASETESFG-----------NEIYTVKFQKKGD-YPLFGCKY 359

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

POMBASE|SPCC330.10 pcm1 "P-TEFb-cap methyltransferase Pcm1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 199 (75.1 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 73/282 (25%), Positives = 126/282 (44%)

Query:    15 RLYEFAKTALIKIYS-HP--Y-VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEA 70
             R   + K+ LI+ ++ H   Y + V D+ CG G D+ KW+ A I  YIGID+A   + +A
Sbjct:    90 RFNNWIKSVLIQKFAPHASDYPILVLDMGCGKGGDLIKWDKAGIDGYIGIDIAEVSVNQA 149

Query:    71 RDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQ 130
             +  +     +F A F+  D  + +    +     + D+V     +   FE+EE+ R LL 
Sbjct:   150 KKRYREMHASFDALFYAGDCFSSSINELLPPDQRKFDVVSLQFCMHYAFESEEKVRVLLG 209

Query:   131 NVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF-E 189
             NVS  L  GG  +G  P+S  I  K+ K           +KP        ++ Y + F E
Sbjct:   210 NVSKCLPRGGVMIGTIPNSDVI-VKHIK----------MLKPG--EKEWGNDIYKVRFPE 256

Query:   190 VEEEKF-PLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN-LNEFYDDN 247
                  F P +G +Y     + ++   + +V F +   +A    LE + ++  L+   ++ 
Sbjct:   257 SPPRSFRPPYGIQYYFYLEDAVTDVPEYVVPFEAFRAVAEGYNLELIWVKPFLDILNEEK 316

Query:   248 RALFAGMLMSAGPNLIDPRGR--LLPRSYDVLGLYSTFIFQK 287
              +   G LM     ++D  G   +  +  +  G Y  F F+K
Sbjct:   317 NSETYGPLMDR-MKVVDNEGHRGIGGQEKEAAGFYLAFAFEK 357

GO:0001510 "RNA methylation" evidence=IC

GO:0003723 "RNA binding" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IGI

GO:0005634 "nucleus" evidence=IGI;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006370 "7-methylguanosine mRNA capping" evidence=IGI

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=ISS

GO:0032153 "cell division site" evidence=IDA

GO:0070693 "P-TEFb-cap methyltransferase complex" evidence=IDA

UNIPROTKB|Q61E36 tag-72 "mRNA cap guanine-N7 methyltransferase" [Caenorhabditis briggsae (taxid:6238)]

 Score = 190 (71.9 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 62/212 (29%), Positives = 93/212 (43%)

Query:    35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN----FIAEFFEADP 90
             V D+ CG G D+ KW+     + +  DVA   I +A + ++   K     F A+F  AD 
Sbjct:    58 VLDIACGKGGDLRKWDITGAKHVVMADVADVSIQQAEERYKTMHKYPHDIFGAQFIVADC 117

Query:    91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150
               EN + +++ K    DLV C   +   F  E+ AR  L+N    LK GG F+G  PD+ 
Sbjct:   118 TKENLDDKIEIK-EPFDLVSCQFAMHYSFVDEDSARTFLKNAVGKLKLGGVFIGTLPDAD 176

Query:   151 TIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDI 210
              I       V A  N +     N V  C    +Y    E+ E   PLFG K+       +
Sbjct:   177 RI-------VWAVRNGTEGKFANDV--C--KITYEKVDELSEGNVPLFGAKFHFSLDEQV 225

Query:   211 SAETQCLVHFPSLIRLAREAGLEYVEIQNLNE 242
             +   + L +F  +  L  E  +E + + N  E
Sbjct:   226 NCP-EFLAYFSLVKHLLEEHDMELLFVHNFAE 256

GO:0003723 "RNA binding" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5HZ60	MCES2_ARATH	2, ., 1, ., 1, ., 5, 6	0.6648	0.9887	0.9971	yes	no
Q6K833	MCES2_ORYSJ	2, ., 1, ., 1, ., 5, 6	0.6267	0.9075	0.9557	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.976
4th Layer	2.1.1.56	0.991
4th Layer	2.1.1.145	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	357
pfam03291	327	pfam03291, Pox_MCEL, mRNA capping enzyme	2e-34
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	2e-08
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	1e-07
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-07
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	7e-06
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	4e-05
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	8e-04

>gnl|CDD|217477 pfam03291, Pox_MCEL, mRNA capping enzyme

 Score =  129 bits (325), Expect = 2e-34
 Identities = 81/297 (27%), Positives = 127/297 (42%), Gaps = 47/297 (15%)

Query: 21  KTALIKIY-SH-----PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW 74
           K+ LI +Y S      P   V DL CG G D++K+    I+  IG D+A   I +A++ +
Sbjct: 47  KSLLISLYASKTFQDKPKRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERY 106

Query: 75  E------NQRKN---FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERA 125
                    +     FIAEF   D    +     +    + D+V     +   FE+EE+A
Sbjct: 107 NDLNSRSKSKYYKFDFIAEFITGDCFVSSVREVFEPGQRKFDIVSWQFAIHYSFESEEKA 166

Query: 126 RRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV 185
           R +L+N++ LL  GG F+G TPD   I  K           +     +   N I    Y 
Sbjct: 167 RTMLRNLAELLASGGKFIGTTPDGDFIIKKLT--------ATFVEHKSF-GNSI----YY 213

Query: 186 ITFEVEEEKFPLFGKKYQLKFANDISAETQC---LVHFPSLIRLAREAGLEYVEIQNLNE 242
           ++FE ++   P FG KY     N     T     LV F +L+ LA E GLE V+ +  ++
Sbjct: 214 VSFE-KDPPRPPFGIKYVY---NLEDMVTDVPEYLVPFETLVELAEEYGLELVDKKTFHD 269

Query: 243 FYDDN-RALFAGMLM---------SAGPNLIDPRGRLLPRSYDV--LGLYSTFIFQK 287
            Y++  +   + ML+          A    ++          +   L LY  F+F+K
Sbjct: 270 IYNEEIKKYRSKMLINRMSGLESRPATYFELNRLALGTLEGDEWEALLLYLVFVFEK 326

This family of enzymes are related to pfam03919. Length = 327

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 33  VTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFI--AEFFEA 88
           + V DL CG G         L   A  +GID++   I +A+   EN +K      EF + 
Sbjct: 5   IKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAK---ENAKKLGYENVEFIQG 61

Query: 89  DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148
           D   E      Q + N  D+V   + L    + ++    +L+ +  +LKPGG  +   P 
Sbjct: 62  D--IEELPQL-QLEDNSFDVVISNEVLNHLPDPDK----VLEEIIRVLKPGGVLIVSDPV 114

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 35  VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN 94
           + DL CG G  +     A  ++  G+D++   +  A++    + K     F  AD     
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKER--LRDKGPKVRFVVADA---- 54

Query: 95  FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG 140
               +  +    DLV C          ++  R LL+  + LL+PGG
Sbjct: 55  --RDLPFEEGSFDLVICAGLSLDYLSPKQ-LRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 9/110 (8%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            V DL CG G       +   A   G+D++   +  AR        + + E  + D    
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNV-EVLKGD---- 55

Query: 94  NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
             E    E     D++             E   R L+    LLKPGG  +
Sbjct: 56  -AEELPPEADESFDVIISD---PPLHHLVEDLARFLEEARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 17/107 (15%)

Query: 37  DLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96
           D+ CG G+  +       A   G+D++   +  AR     +R     +F   D     F 
Sbjct: 2   DVGCGTGLLAEALARRGGARVTGVDLSPEMLALAR-----KRAPR--KFVVGDAEDLPFP 54

Query: 97  TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
                     D+V                 R L+ ++ +LKPGG  +
Sbjct: 55  ------DESFDVVVSSL----VLHHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 27/126 (21%), Positives = 38/126 (30%), Gaps = 26/126 (20%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            V D+ CG G+ +         +  G+D                     + F   DP   
Sbjct: 25  RVLDIGCGTGILLRLLRERG-FDVTGVD------------PSPAAVLIFSLFDAPDP--- 68

Query: 94  NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153
                    A + DL+  F       E       LLQ +  LLKPGG  L  TP +    
Sbjct: 69  ------AVLAGKYDLITAF----EVLEHLPDPPALLQQLRELLKPGGVLLISTPLADDDA 118

Query: 154 AKYQKN 159
             +   
Sbjct: 119 RLFANW 124

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 11/107 (10%)

Query: 37  DLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF 95
           D+ CG G  +     AL    Y G+D++ + +  A +          A     D      
Sbjct: 2   DIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAER-LAALGLLDAVRVRLDVLDAID 60

Query: 96  ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142
                      D+V     L          R +L+N+  LLKPGG  
Sbjct: 61  L-----DPGSFDVVVASNVLH-HLAD---PRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	100.0
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.87
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.86
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.76
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.76
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.76
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.73
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.73
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.71
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.71
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.7
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.7
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.66
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.66
KOG1271	227	consensus Methyltransferases [General function pre	99.66
PLN02244	340	tocopherol O-methyltransferase	99.65
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.65
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.65
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.64
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.64
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.64
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.64
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.64
PRK11207	197	tellurite resistance protein TehB; Provisional	99.62
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.61
PRK05785	226	hypothetical protein; Provisional	99.61
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.58
PLN02336	475	phosphoethanolamine N-methyltransferase	99.58
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.58
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.57
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.57
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.56
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.56
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.55
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.54
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.53
PRK12335	287	tellurite resistance protein TehB; Provisional	99.53
TIGR03438	301	probable methyltransferase. This model represents	99.53
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.53
PLN02490	340	MPBQ/MSBQ methyltransferase	99.53
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.53
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.51
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.51
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.5
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.5
KOG4300	252	consensus Predicted methyltransferase [General fun	99.5
PRK06202	232	hypothetical protein; Provisional	99.49
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.48
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.48
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.47
PRK06922	677	hypothetical protein; Provisional	99.46
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.46
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.46
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.46
PLN03075	296	nicotianamine synthase; Provisional	99.45
PRK08317	241	hypothetical protein; Provisional	99.45
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.45
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.44
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.44
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.44
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.44
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.43
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.43
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.43
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.42
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.41
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.41
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.4
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.4
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.39
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.36
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.36
PRK14967	223	putative methyltransferase; Provisional	99.36
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.35
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.35
PLN02336	475	phosphoethanolamine N-methyltransferase	99.34
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.33
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.32
PRK04266	226	fibrillarin; Provisional	99.31
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.31
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.28
PRK14968	188	putative methyltransferase; Provisional	99.28
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.28
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.28
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.28
KOG3010	261	consensus Methyltransferase [General function pred	99.27
TIGR00438	188	rrmJ cell division protein FtsJ.	99.27
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.26
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.26
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.25
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.25
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.24
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.24
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.24
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.24
COG4123	248	Predicted O-methyltransferase [General function pr	99.21
KOG2361	264	consensus Predicted methyltransferase [General fun	99.21
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.21
PRK07402	196	precorrin-6B methylase; Provisional	99.2
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.2
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.19
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.18
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.13
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.13
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.12
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.12
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.12
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.11
PTZ00146	293	fibrillarin; Provisional	99.11
PRK04457	262	spermidine synthase; Provisional	99.11
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.1
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.08
PRK00811	283	spermidine synthase; Provisional	99.08
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.08
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.08
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.07
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.07
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.07
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.07
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.06
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.04
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.03
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.02
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.02
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.01
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.01
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.01
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.01
PHA03411	279	putative methyltransferase; Provisional	99.01
COG2890	280	HemK Methylase of polypeptide chain release factor	98.92
PRK01581	374	speE spermidine synthase; Validated	98.91
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.89
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.89
PLN02366	308	spermidine synthase	98.89
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.88
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.88
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.87
PHA03412	241	putative methyltransferase; Provisional	98.85
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.85
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.83
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.83
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.82
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.79
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.78
PRK03612	521	spermidine synthase; Provisional	98.76
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.76
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.75
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.75
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.74
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.73
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.72
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.72
KOG2899	288	consensus Predicted methyltransferase [General fun	98.72
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.71
KOG2940	325	consensus Predicted methyltransferase [General fun	98.71
KOG2904	328	consensus Predicted methyltransferase [General fun	98.7
PLN02476	278	O-methyltransferase	98.7
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.68
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.67
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.66
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.65
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.63
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.63
PLN02672	1082	methionine S-methyltransferase	98.61
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.61
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.6
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.56
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.54
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.53
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.53
COG4122	219	Predicted O-methyltransferase [General function pr	98.53
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.53
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.52
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.51
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.47
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.47
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.46
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.45
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.44
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.43
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.41
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.37
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.36
PRK04148	134	hypothetical protein; Provisional	98.35
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.34
PLN02823	336	spermine synthase	98.34
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.34
KOG1331	293	consensus Predicted methyltransferase [General fun	98.34
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.32
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.32
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.28
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.27
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.23
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.21
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.17
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.16
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.16
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.09
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.09
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.08
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.08
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.07
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.05
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.05
PRK00536	262	speE spermidine synthase; Provisional	98.04
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.03
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.03
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.0
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.99
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.99
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.95
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.93
COG2520	341	Predicted methyltransferase [General function pred	97.92
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.91
COG2521	287	Predicted archaeal methyltransferase [General func	97.9
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.87
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.84
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.82
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.81
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.8
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.8
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.74
PF13679	141	Methyltransf_32: Methyltransferase domain	97.73
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.66
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.64
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.58
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.55
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.51
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.48
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.47
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.35
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.32
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.31
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.3
COG3897	218	Predicted methyltransferase [General function pred	97.27
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.25
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.22
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.21
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.18
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.09
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.08
KOG2730	263	consensus Methylase [General function prediction o	97.07
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.03
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.99
COG4076	252	Predicted RNA methylase [General function predicti	96.97
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.95
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.87
KOG3201	201	consensus Uncharacterized conserved protein [Funct	96.86
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.82
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.71
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.66
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.61
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.59
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.57
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.53
COG0286	489	HsdM Type I restriction-modification system methyl	96.49
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.29
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.11
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.08
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.01
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	95.94
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	95.9
KOG3115	249	consensus Methyltransferase-like protein [General	95.86
PRK11524	284	putative methyltransferase; Provisional	95.85
PLN02668	386	indole-3-acetate carboxyl methyltransferase	95.82
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.75
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	95.66
PRK10742	250	putative methyltransferase; Provisional	95.66
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	95.56
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.55
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	95.53
PRK13699	227	putative methylase; Provisional	95.42
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.16
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	94.64
KOG4058	199	consensus Uncharacterized conserved protein [Funct	94.39
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.29
COG3129	292	Predicted SAM-dependent methyltransferase [General	94.27
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	94.1
COG4301	321	Uncharacterized conserved protein [Function unknow	94.09
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	94.08
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	94.01
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	93.67
COG4798	238	Predicted methyltransferase [General function pred	93.58
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	93.2
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	93.08
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	93.06
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	92.82
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	92.65
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	92.47
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	92.39
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	92.39
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	92.03
PF03269	177	DUF268: Caenorhabditis protein of unknown function	91.92
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	91.77
KOG2671	421	consensus Putative RNA methylase [Replication, rec	91.63
PHA01634	156	hypothetical protein	91.56
KOG1227	351	consensus Putative methyltransferase [General func	91.4
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	91.29
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	91.18
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	91.09
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	91.04
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	91.01
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	90.65
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.34
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	89.84
KOG1501	636	consensus Arginine N-methyltransferase [General fu	89.62
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	89.49
TIGR00497	501	hsdM type I restriction system adenine methylase (	89.19
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	89.18
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	89.08
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	88.56
COG3315	297	O-Methyltransferase involved in polyketide biosynt	88.32
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	87.74
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	87.0
KOG2920	282	consensus Predicted methyltransferase [General fun	86.55
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	84.39
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	84.05
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	83.34
KOG2352	482	consensus Predicted spermine/spermidine synthase [	81.6
PRK10458	467	DNA cytosine methylase; Provisional	81.03
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	80.88
PRK10669	558	putative cation:proton antiport protein; Provision	80.86
PRK03659	601	glutathione-regulated potassium-efflux system prot	80.75
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	80.66
COG1565	370	Uncharacterized conserved protein [Function unknow	80.13
PRK03562	621	glutathione-regulated potassium-efflux system prot	80.06

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=100.00  E-value=3.3e-59  Score=451.36  Aligned_cols=270  Identities=36%  Similarity=0.644  Sum_probs=208.1

Q ss_pred             CCCcch---HHHHHHHHHHHHHHHcCC------CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHh-
Q 018352            7 PRSELT---HHRLYEFAKTALIKIYSH------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN-   76 (357)
Q Consensus         7 ~r~~~p---~~~~~nwvks~Li~~~~~------~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~-   76 (357)
                      .|.+|+   .+++|||||++||+.+++      ++.+|||||||+|||+.||..+++.+|+|+|||.++|++|++|++. 
T Consensus        29 ~R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~  108 (331)
T PF03291_consen   29 ERQESPIFHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQL  108 (331)
T ss_dssp             -----TCHHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHH
T ss_pred             hhhhChhHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            577776   566899999999999998      8899999999999999999999999999999999999999999943 


Q ss_pred             --------cCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352           77 --------QRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus        77 --------~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                              .+..+.+.|+.+|++...+...+.....+||+|+|||+|||+|+++++++.+|+||++.|+|||+||||+||
T Consensus       109 ~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  109 KKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             HTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             ccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence                    122478899999999877765554434699999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHH
Q 018352          149 SSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAR  228 (357)
Q Consensus       149 ~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~  228 (357)
                      ++.|++++++....       .....|||    ++|+|+|+.+ ...|.||++|.|+|++.+.+|+||||+|+.|++||+
T Consensus       189 ~~~i~~~l~~~~~~-------~~~~~~gN----~~y~I~f~~~-~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~  256 (331)
T PF03291_consen  189 SDEIVKRLREKKSN-------SEKKKFGN----SVYSIEFDSD-DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAK  256 (331)
T ss_dssp             HHHHHCCHHC-EEE-------CCCSCSET----SSEEEEESCC-SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHH
T ss_pred             HHHHHHHHHhhccc-------ccccccCC----ccEEEEeccc-CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHH
Confidence            99999888752110       01124555    5799999876 577899999999999998899999999999999999


Q ss_pred             HcCCEEEEecCchHHHHhhHHH--HHHHHHhcC---CCCC---------CCCCCCChhHHHHHh-hheeEEEEec
Q 018352          229 EAGLEYVEIQNLNEFYDDNRAL--FAGMLMSAG---PNLI---------DPRGRLLPRSYDVLG-LYSTFIFQKP  288 (357)
Q Consensus       229 e~Glelv~~~~f~~f~~~~~~~--~~~~~~~~~---~~~~---------~~~g~l~~~e~e~~~-lY~~f~F~K~  288 (357)
                      ||||++|+.++|+|||+++.+.  ...+++++.   ..-.         ...|++|.+|||+++ ||++|||+|.
T Consensus       257 eyGLeLV~~~~F~ef~~e~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~ewea~~~lY~~F~F~K~  331 (331)
T PF03291_consen  257 EYGLELVEKKNFHEFYEEEKNKYEKRSLLERMKALEKRPGSYNDNEQKRISLGTLSKDEWEAASSLYLVFAFKKK  331 (331)
T ss_dssp             HTTEEEEEEEEHHHHHHHHCCCCHCHHHHHCHGGG--SHHHHHHHHHHHHHCCSS-CCCHHHHCTTEEEEEEEE-
T ss_pred             HcCCEEEEeCChHHHHHHhccCchhhHHHHHHHhhcCCCCcccchhhccccccCCCHHHHHHHHhheEEEEEEeC
Confidence            9999999999999999975321  112222211   1000         013689999999999 9999999995

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=100.00  E-value=1.9e-58  Score=429.84  Aligned_cols=276  Identities=32%  Similarity=0.498  Sum_probs=235.8

Q ss_pred             CCCcch---HHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcC-----
Q 018352            7 PRSELT---HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----   78 (357)
Q Consensus         7 ~r~~~p---~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~-----   78 (357)
                      .|..||   .+++|||||++||+.|.+++..++|||||+||||.||.+++++.|+|+||++.+|++|++||+++.     
T Consensus        90 ~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~  169 (389)
T KOG1975|consen   90 KRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKK  169 (389)
T ss_pred             hhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhc
Confidence            577777   467899999999999999999999999999999999999999999999999999999999998642     


Q ss_pred             CCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHH
Q 018352           79 KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (357)
Q Consensus        79 ~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~  158 (357)
                      ..|.+.|+.+|++...+.+.+..++.+||+|+|||++||+|+++++++.+|+|++++|+|||+||+|+||++.|++++++
T Consensus       170 ~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~  249 (389)
T KOG1975|consen  170 FIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRA  249 (389)
T ss_pred             ccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHh
Confidence            34679999999999888776654455599999999999999999999999999999999999999999999999999985


Q ss_pred             hHHhhhcCCCCCCCCCCCCccCCccEEEEeeccc---CCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEE
Q 018352          159 NVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE---EKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYV  235 (357)
Q Consensus       159 ~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~~~---~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv  235 (357)
                      . +          ...|||+    +|+|+|+.+.   ...|+||.+|+|+|+++| +||||||+|+.|+.||++|||+||
T Consensus       250 ~-e----------~~~~gNd----iykv~y~~~~~k~~~~p~fG~kY~F~LedaV-dcPEylV~F~~l~~lae~y~LeLv  313 (389)
T KOG1975|consen  250 G-E----------VERFGND----IYKVTYEIEFQKEFDVPPFGAKYRFHLEDAV-DCPEYLVPFPTLVSLAEEYGLELV  313 (389)
T ss_pred             c-c----------chhhcce----eeeEeeeeecccccCCCCccceEEEEccccc-CCcceeeehHHHHHHHHhcCcEEE
Confidence            3 1          1367776    6887776432   237999999999999976 599999999999999999999999


Q ss_pred             EecCchHHHHhhHHH--HHHHHHhcC-CCCCCCCCCCChhHHHHHhhheeEEEEecCCCCCCCCcc
Q 018352          236 EIQNLNEFYDDNRAL--FAGMLMSAG-PNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLAT  298 (357)
Q Consensus       236 ~~~~f~~f~~~~~~~--~~~~~~~~~-~~~~~~~g~l~~~e~e~~~lY~~f~F~K~~~~~~~~~~~  298 (357)
                      ..++|+|||+++.+.  +..++++|. ..-...++..+.+|||++++|.+|+++|..-.-.+.++.
T Consensus       314 ~~k~F~df~~e~~~~~~~~~Llkrm~gLe~~~~~~~~~~de~e~a~~~l~~~~~~~~ir~~gtlsk  379 (389)
T KOG1975|consen  314 FVKPFADFYEEELKKNEERELLKRMEGLECYPNEEGESGDEYEAASFYLTFFPEKDRIRYEGTLSK  379 (389)
T ss_pred             EeccHHHHHHHhccccchhhHHHHHhcccCCCccccccchHHHHHHHHHhhhhhccccccccccch
Confidence            999999999997655  478888873 222223456788999999999999999886654444443

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.87  E-value=2.3e-21  Score=178.96  Aligned_cols=176  Identities=26%  Similarity=0.366  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHc-CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch
Q 018352           18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (357)
Q Consensus        18 nwvks~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~   95 (357)
                      .| +..++... ..++.+|||+|||||..+..+++. +.++++|+|+|+.||+.|++|....+... ++|+++|+...++
T Consensus        38 ~W-r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf  115 (238)
T COG2226          38 LW-RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF  115 (238)
T ss_pred             HH-HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC
Confidence            45 44444443 447999999999999888888776 56799999999999999999998765443 9999999999998


Q ss_pred             hhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE---eCCchHHHHHHHHhHHhhhcCCCCCCC
Q 018352           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNVEAYHNRSSSMKP  172 (357)
Q Consensus        96 ~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t---~pd~~~i~~~~~~~~~~~~~~~~~~~~  172 (357)
                            ++++||+|+|.|++|+ +.   +..++|++++|+|||||++++.   .|+...+...+..-...          
T Consensus       116 ------~D~sFD~vt~~fglrn-v~---d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~----------  175 (238)
T COG2226         116 ------PDNSFDAVTISFGLRN-VT---DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFK----------  175 (238)
T ss_pred             ------CCCccCEEEeeehhhc-CC---CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHH----------
Confidence                  7899999999999999 53   5778899999999999999887   34443333322211100          


Q ss_pred             CCCCCccCCccEEEEeecccCCCCccce-------eeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCc
Q 018352          173 NLVPNCIRSESYVITFEVEEEKFPLFGK-------KYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (357)
Q Consensus       173 ~~fgn~i~~~~y~i~f~~~~~~~p~fG~-------~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f  240 (357)
                                          ...|.+|.       .|.| |.+++.    .+...+.|.++.++.||+.+...++
T Consensus       176 --------------------~v~P~~g~~~~~~~~~y~y-L~eSi~----~~p~~~~l~~~~~~~gf~~i~~~~~  225 (238)
T COG2226         176 --------------------YVLPLIGKLVAKDAEAYEY-LAESIR----RFPDQEELKQMIEKAGFEEVRYENL  225 (238)
T ss_pred             --------------------hHhhhhceeeecChHHHHH-HHHHHH----hCCCHHHHHHHHHhcCceEEeeEee
Confidence                                01122222       3555 555543    3568899999999999999886554

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.86  E-value=1.6e-21  Score=180.65  Aligned_cols=165  Identities=26%  Similarity=0.392  Sum_probs=82.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..++.+|||+|||+|..+..+++.  +..+|+|+|+|+.||+.|+++.+..... +++|+++|+...++      ++++|
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~------~d~sf  117 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF------PDNSF  117 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-------TT-E
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC------CCCce
Confidence            347889999999999666666554  3469999999999999999999875443 89999999999888      67999


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE---eCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCcc
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES  183 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t---~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~  183 (357)
                      |+|+|.|++|+ +.+   ..+++++++|+|||||++++.   .|+.. +++.+.+.                        
T Consensus       118 D~v~~~fglrn-~~d---~~~~l~E~~RVLkPGG~l~ile~~~p~~~-~~~~~~~~------------------------  168 (233)
T PF01209_consen  118 DAVTCSFGLRN-FPD---RERALREMYRVLKPGGRLVILEFSKPRNP-LLRALYKF------------------------  168 (233)
T ss_dssp             EEEEEES-GGG--SS---HHHHHHHHHHHEEEEEEEEEEEEEB-SSH-HHHHHHHH------------------------
T ss_pred             eEEEHHhhHHh-hCC---HHHHHHHHHHHcCCCeEEEEeeccCCCCc-hhhceeee------------------------
Confidence            99999999998 543   567899999999999999877   45543 33333211                        


Q ss_pred             EEEEeecccCCCCccc-------eeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCc
Q 018352          184 YVITFEVEEEKFPLFG-------KKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (357)
Q Consensus       184 y~i~f~~~~~~~p~fG-------~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f  240 (357)
                      |.-      ...|.+|       ..|.| |.+++.    -+.+.+.|.++++++||+.++.+++
T Consensus       169 y~~------~ilP~~g~l~~~~~~~Y~y-L~~Si~----~f~~~~~~~~~l~~~Gf~~v~~~~~  221 (233)
T PF01209_consen  169 YFK------YILPLIGRLLSGDREAYRY-LPESIR----RFPSPEELKELLEEAGFKNVEYRPL  221 (233)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             eec------ccccccccccccccccccc-cccccc----ccccccccccccccccccccccccc
Confidence            110      0122222       24766 777654    3568899999999999999987765

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.76  E-value=1.2e-17  Score=152.72  Aligned_cols=175  Identities=17%  Similarity=0.248  Sum_probs=126.9

Q ss_pred             HHHHHHHcCC-CCCEEEEECCCCChhHHHHHHh-c------CCeEEEEeCChHHHHHHHHHhHhcCCCc--eeEEEEcCC
Q 018352           21 KTALIKIYSH-PYVTVCDLYCGAGVDVDKWETA-L------IANYIGIDVATSGIGEARDTWENQRKNF--IAEFFEADP   90 (357)
Q Consensus        21 ks~Li~~~~~-~~~~VLDlGCG~G~~l~k~~~~-~------~~~v~GiDiS~~~l~~A~~r~~~~~~~~--~v~f~~~D~   90 (357)
                      |..++..+-+ ++++|||+|||||-.+..+.+. +      .++|+++|||++||+.+++|.+......  .+.|+++|+
T Consensus        89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA  168 (296)
T KOG1540|consen   89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA  168 (296)
T ss_pred             HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence            5555554433 5789999999999766666654 2      2689999999999999999986644322  489999999


Q ss_pred             CCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc-h-HHHHHHHHhHHhhhcCCC
Q 018352           91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS-S-TIWAKYQKNVEAYHNRSS  168 (357)
Q Consensus        91 ~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~-~-~i~~~~~~~~~~~~~~~~  168 (357)
                      ...+|      ++.+||+.++.|++.+ +.   +.++.|++++|+|||||+|.+.-.+. + ..++.+..          
T Consensus       169 E~LpF------dd~s~D~yTiafGIRN-~t---h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~----------  228 (296)
T KOG1540|consen  169 EDLPF------DDDSFDAYTIAFGIRN-VT---HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYD----------  228 (296)
T ss_pred             ccCCC------CCCcceeEEEecceec-CC---CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHH----------
Confidence            99998      6899999999999999 43   46678999999999999999774332 2 22222211          


Q ss_pred             CCCCCCCCCccCCccEEEEeecccCCCCccce-------eeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEE-ecCc
Q 018352          169 SMKPNLVPNCIRSESYVITFEVEEEKFPLFGK-------KYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVE-IQNL  240 (357)
Q Consensus       169 ~~~~~~fgn~i~~~~y~i~f~~~~~~~p~fG~-------~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~-~~~f  240 (357)
                                    .|+  |    +.+|..|.       .|+| |.+++..    +.+.+.|..+.+++||..+. ..+|
T Consensus       229 --------------~ys--f----~VlpvlG~~iagd~~sYqY-LveSI~r----fp~qe~f~~miedaGF~~~~~ye~l  283 (296)
T KOG1540|consen  229 --------------QYS--F----DVLPVLGEIIAGDRKSYQY-LVESIRR----FPPQEEFASMIEDAGFSSVNGYENL  283 (296)
T ss_pred             --------------hhh--h----hhhchhhHhhhhhHhhhhh-HHhhhhc----CCCHHHHHHHHHHcCCccccccccc
Confidence                          011  1    12344443       3666 6666644    45889999999999999986 4433

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.76  E-value=8.4e-18  Score=136.98  Aligned_cols=109  Identities=27%  Similarity=0.338  Sum_probs=90.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCC-CCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~-~~~~~~~~l~~~~~~FDl  108 (357)
                      |+.+|||||||+|..+..+++. +..+++|+|+|++|++.|+++........+++|+++|+ ....       ...+||+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~D~   73 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-------FLEPFDL   73 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-------TSSCEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-------cCCCCCE
Confidence            5789999999999998888883 67799999999999999999996555566899999999 2222       2467999


Q ss_pred             EEEcc-chhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          109 VCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       109 V~~~~-~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |++.. ++|+.+ +.++.+++++++.+.|+|||+++++++
T Consensus        74 v~~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   74 VICSGFTLHFLL-PLDERRRVLERIRRLLKPGGRLVINTC  112 (112)
T ss_dssp             EEECSGSGGGCC-HHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             EEECCCcccccc-chhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            99999 677545 337789999999999999999998764

...

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.76  E-value=1.5e-17  Score=160.73  Aligned_cols=161  Identities=16%  Similarity=0.213  Sum_probs=114.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||||||+|..+..++.. ..+|+|+|+|++|++.|+++........+++|+++|+...++      .+++||+|+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------~~~~FD~Vi  203 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------EGRKFDAVL  203 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------ccCCCCEEE
Confidence            4569999999999887777654 459999999999999999876543322368899999765443      457899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEeec
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV  190 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~  190 (357)
                      |..++|+ +.   +...++++++++|||||.+++++++....  .+...              .++.     .|...   
T Consensus       204 ~~~vLeH-v~---d~~~~L~~l~r~LkPGG~liist~nr~~~--~~~~~--------------i~~~-----eyi~~---  255 (322)
T PLN02396        204 SLEVIEH-VA---NPAEFCKSLSALTIPNGATVLSTINRTMR--AYAST--------------IVGA-----EYILR---  255 (322)
T ss_pred             EhhHHHh-cC---CHHHHHHHHHHHcCCCcEEEEEECCcCHH--HHHHh--------------hhhH-----HHHHh---
Confidence            9999988 43   35679999999999999999999886432  11000              0000     01000   


Q ss_pred             ccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCch
Q 018352          191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (357)
Q Consensus       191 ~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~  241 (357)
                         ..|. |.           .....+++++.+.++++++||++++...+.
T Consensus       256 ---~lp~-gt-----------h~~~~f~tp~eL~~lL~~aGf~i~~~~G~~  291 (322)
T PLN02396        256 ---WLPK-GT-----------HQWSSFVTPEELSMILQRASVDVKEMAGFV  291 (322)
T ss_pred             ---cCCC-CC-----------cCccCCCCHHHHHHHHHHcCCeEEEEeeeE
Confidence               0011 10           011136789999999999999999988774

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.73  E-value=8.7e-17  Score=151.54  Aligned_cols=109  Identities=19%  Similarity=0.149  Sum_probs=88.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHh--cCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWEN--QRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~--~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      .++.+|||+|||+|..+..+... + ..+|+|+|+|++|++.|+++...  .....+++++++|+...++      ++++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~------~~~s  145 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF------DDCY  145 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC------CCCC
Confidence            46789999999999877666554 2 35899999999999999887642  1122368999999988776      5689


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ||+|+|.+++|+ +.   +..+++++++++|||||+++++...
T Consensus       146 fD~V~~~~~l~~-~~---d~~~~l~ei~rvLkpGG~l~i~d~~  184 (261)
T PLN02233        146 FDAITMGYGLRN-VV---DRLKAMQEMYRVLKPGSRVSILDFN  184 (261)
T ss_pred             EeEEEEeccccc-CC---CHHHHHHHHHHHcCcCcEEEEEECC
Confidence            999999999998 43   4677899999999999999888543

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.73  E-value=2.7e-17  Score=128.94  Aligned_cols=95  Identities=26%  Similarity=0.339  Sum_probs=81.8

Q ss_pred             EEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccch
Q 018352           36 CDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHL  115 (357)
Q Consensus        36 LDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~l  115 (357)
                      ||+|||+|..+..+.+.+..+|+|+|+|+++++.|+++....    .+.+.++|....++      ++++||+|++..++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~------~~~sfD~v~~~~~~   70 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPF------PDNSFDVVFSNSVL   70 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-------TT-EEEEEEESHG
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCcc------ccccccccccccce
Confidence            899999999998888886779999999999999999998765    45699999999887      67999999999999


Q ss_pred             hhccCCHHHHHHHHHHHHhcccCCcEEEE
Q 018352          116 QMCFETEERARRLLQNVSSLLKPGGYFLG  144 (357)
Q Consensus       116 h~~fes~~~~~~~L~~i~~~LkpGG~fi~  144 (357)
                      ||+    ++..++++++.|+|||||++++
T Consensus        71 ~~~----~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   71 HHL----EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             GGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eec----cCHHHHHHHHHHHcCcCeEEeC
Confidence            993    5788999999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.71  E-value=1.1e-17  Score=152.70  Aligned_cols=171  Identities=20%  Similarity=0.256  Sum_probs=119.1

Q ss_pred             HHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh
Q 018352           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (357)
Q Consensus        19 wvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~   98 (357)
                      |++...-.++--++.+|||+|||-|..+..+++.+ .+|+|+|+|+.+|+.|+.+......  .+++.+..+.+...   
T Consensus        47 ~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~---  120 (243)
T COG2227          47 YIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLAS---  120 (243)
T ss_pred             hhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHh---
Confidence            44444433333478999999999996666666666 6999999999999999999877643  34455554433211   


Q ss_pred             hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCc
Q 018352           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNC  178 (357)
Q Consensus        99 l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~  178 (357)
                         ..++||+|+|.-+++|    .++.+.+++++.+++||||.++.+|+|.......+ ..                   
T Consensus       121 ---~~~~FDvV~cmEVlEH----v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~-~i-------------------  173 (243)
T COG2227         121 ---AGGQFDVVTCMEVLEH----VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLL-AI-------------------  173 (243)
T ss_pred             ---cCCCccEEEEhhHHHc----cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHH-HH-------------------
Confidence               3479999999997666    45677799999999999999999999964332211 11                   


Q ss_pred             cCCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCch
Q 018352          179 IRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (357)
Q Consensus       179 i~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~  241 (357)
                                         +|.+|.+.+.-..+....-++.++++...+.+.|+++.....++
T Consensus       174 -------------------~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~  217 (243)
T COG2227         174 -------------------IGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLT  217 (243)
T ss_pred             -------------------HHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecceE
Confidence                               11122111111122223357899999999999999999988774

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.71  E-value=1e-16  Score=150.80  Aligned_cols=212  Identities=20%  Similarity=0.229  Sum_probs=153.1

Q ss_pred             HHHHHHHHc--CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352           20 AKTALIKIY--SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (357)
Q Consensus        20 vks~Li~~~--~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~   97 (357)
                      .|-.++.+.  +.++++|||||||.|+.+..+++.-..+|+|+++|+++.+.|+++++..+...++++...|...  +  
T Consensus        59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd--~--  134 (283)
T COG2230          59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD--F--  134 (283)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc--c--
Confidence            344444443  4599999999999999888888776679999999999999999999988777788999888755  2  


Q ss_pred             hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCC
Q 018352           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPN  177 (357)
Q Consensus        98 ~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn  177 (357)
                           .+.||-|++...++| + ..+....++++++++|+|||.++..+.....-                         
T Consensus       135 -----~e~fDrIvSvgmfEh-v-g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~-------------------------  182 (283)
T COG2230         135 -----EEPFDRIVSVGMFEH-V-GKENYDDFFKKVYALLKPGGRMLLHSITGPDQ-------------------------  182 (283)
T ss_pred             -----ccccceeeehhhHHH-h-CcccHHHHHHHHHhhcCCCceEEEEEecCCCc-------------------------
Confidence                 355999999998888 5 45668899999999999999998774332100                         


Q ss_pred             ccCCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHHHHHHHh
Q 018352          178 CIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMS  257 (357)
Q Consensus       178 ~i~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~~~~~~~  257 (357)
                      .     +.        ..+.|-.+|.|-        ..++.+.+.+.+.+++.||.+....+|...|......|...++.
T Consensus       183 ~-----~~--------~~~~~i~~yiFP--------gG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~  241 (283)
T COG2230         183 E-----FR--------RFPDFIDKYIFP--------GGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEA  241 (283)
T ss_pred             c-----cc--------cchHHHHHhCCC--------CCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHH
Confidence            0     00        224466677771        23567888899999999999999999999998877666655543


Q ss_pred             cCCCCCCCCCCCChhHHHHHhhheeEEEEec
Q 018352          258 AGPNLIDPRGRLLPRSYDVLGLYSTFIFQKP  288 (357)
Q Consensus       258 ~~~~~~~~~g~l~~~e~e~~~lY~~f~F~K~  288 (357)
                      .........+.--.+-|+..-.++...|+.-
T Consensus       242 ~~~~a~~~~~e~~~r~w~~yl~~~~~~Fr~~  272 (283)
T COG2230         242 NRDEAIALYDERFYRMWELYLAACAAAFRAG  272 (283)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhccC
Confidence            2111111111112245776666666666654

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.70  E-value=2.4e-16  Score=147.75  Aligned_cols=178  Identities=17%  Similarity=0.179  Sum_probs=122.4

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      +++.+..++.+|||+|||+|..+..++..+ .+|+|+|+|++|++.|+++.+..+...+++++++|+.....     ..+
T Consensus        37 ~l~~l~~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-----~~~  110 (255)
T PRK11036         37 LLAELPPRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-----HLE  110 (255)
T ss_pred             HHHhcCCCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-----hcC
Confidence            444444567899999999998888887765 59999999999999999998766544578899999865321     035


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCcc
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES  183 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~  183 (357)
                      ++||+|+|..++|| ++   +...+++++.++|||||+++++..|...+..+.  .              ..+|-     
T Consensus       111 ~~fD~V~~~~vl~~-~~---~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~--~--------------~~~~~-----  165 (255)
T PRK11036        111 TPVDLILFHAVLEW-VA---DPKSVLQTLWSVLRPGGALSLMFYNANGLLMHN--M--------------VAGNF-----  165 (255)
T ss_pred             CCCCEEEehhHHHh-hC---CHHHHHHHHHHHcCCCeEEEEEEECccHHHHHH--H--------------HccCh-----
Confidence            78999999999998 43   345789999999999999999988875432111  0              01110     


Q ss_pred             EEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecC---chHHHHh
Q 018352          184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN---LNEFYDD  246 (357)
Q Consensus       184 y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~---f~~f~~~  246 (357)
                           +.....++ ...+..+        .+.+.++.+.+.++++++||+++....   |++|..+
T Consensus       166 -----~~~~~~~~-~~~~~~~--------~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~~~~~~~~  217 (255)
T PRK11036        166 -----DYVQAGMP-KRKKRTL--------SPDYPLDPEQVYQWLEEAGWQIMGKTGVRVFHDYLRN  217 (255)
T ss_pred             -----HHHHhcCc-cccccCC--------CCCCCCCHHHHHHHHHHCCCeEeeeeeEEEEeeccCc
Confidence                 00000000 0000000        123456888999999999999997655   6666644

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.70  E-value=1e-15  Score=144.39  Aligned_cols=161  Identities=16%  Similarity=0.225  Sum_probs=117.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      +.++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++....   .++.|.++|+...++      ++++||+
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---~~i~~~~~D~~~~~~------~~~~FD~  120 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKIEFEANDILKKDF------PENTFDM  120 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---CceEEEECCcccCCC------CCCCeEE
Confidence            4578899999999998887776554459999999999999999987542   368999999987666      5689999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF  188 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f  188 (357)
                      |++..++++ + +.++...++++++++|||||+|+++.+.....- .......                           
T Consensus       121 V~s~~~l~h-~-~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~-~~~~~~~---------------------------  170 (263)
T PTZ00098        121 IYSRDAILH-L-SYADKKKLFEKCYKWLKPNGILLITDYCADKIE-NWDEEFK---------------------------  170 (263)
T ss_pred             EEEhhhHHh-C-CHHHHHHHHHHHHHHcCCCcEEEEEEecccccc-CcHHHHH---------------------------
Confidence            999888776 3 445678999999999999999998854321100 0000000                           


Q ss_pred             ecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhh
Q 018352          189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN  247 (357)
Q Consensus       189 ~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~  247 (357)
                                  .|   +....    ..+.+.+.+.++++++||+.+...+..+++...
T Consensus       171 ------------~~---~~~~~----~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~  210 (263)
T PTZ00098        171 ------------AY---IKKRK----YTLIPIQEYGDLIKSCNFQNVVAKDISDYWLEL  210 (263)
T ss_pred             ------------HH---HHhcC----CCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHH
Confidence                        00   00000    024577889999999999999988877777653

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.66  E-value=1.2e-15  Score=142.59  Aligned_cols=112  Identities=21%  Similarity=0.250  Sum_probs=92.1

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~  100 (357)
                      ++..+..++.+|||||||+|..+..++..   +..+++|+|+|+.|++.|+++....+...+++++++|+...++     
T Consensus        49 ~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----  123 (247)
T PRK15451         49 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----  123 (247)
T ss_pred             HHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----
Confidence            34455678899999999999877776652   4569999999999999999998765444478999999876543     


Q ss_pred             hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                         ..+|+|+|.+++|+ + +.++...++++++++|||||.|+++
T Consensus       124 ---~~~D~vv~~~~l~~-l-~~~~~~~~l~~i~~~LkpGG~l~l~  163 (247)
T PRK15451        124 ---ENASMVVLNFTLQF-L-EPSERQALLDKIYQGLNPGGALVLS  163 (247)
T ss_pred             ---CCCCEEehhhHHHh-C-CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence               45999999999998 5 3556788999999999999999987

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.66  E-value=8.8e-16  Score=132.65  Aligned_cols=117  Identities=22%  Similarity=0.338  Sum_probs=93.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .+.+|||+|||+|..+..++..  +..+++|+|+|++||+.|+++.+..+.. +++|+++|+.+.+-  .+  . ++||+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~--~~--~-~~~D~   76 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQ--EL--E-EKFDI   76 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCG--CS--S-TTEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhcccc--cc--C-CCeeE
Confidence            5689999999999999988843  4679999999999999999998876555 79999999988431  00  2 78999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC-chHHHHHHH
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD-SSTIWAKYQ  157 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd-~~~i~~~~~  157 (357)
                      |++..++|+ +   .+...+++++.++|++||.+++..+. ...+.+.+.
T Consensus        77 I~~~~~l~~-~---~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~  122 (152)
T PF13847_consen   77 IISNGVLHH-F---PDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLE  122 (152)
T ss_dssp             EEEESTGGG-T---SHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHH
T ss_pred             EEEcCchhh-c---cCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHH
Confidence            999998888 4   24568899999999999999999777 344444443

...

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.66  E-value=7.9e-16  Score=134.32  Aligned_cols=171  Identities=18%  Similarity=0.181  Sum_probs=114.9

Q ss_pred             chHHHHHHHHHHHHHHHcCCCC-CEEEEECCCCChhHHHHHHhcCCe-EEEEeCChHHHHHHHHHhHhcCCCceeEEEEc
Q 018352           11 LTHHRLYEFAKTALIKIYSHPY-VTVCDLYCGAGVDVDKWETALIAN-YIGIDVATSGIGEARDTWENQRKNFIAEFFEA   88 (357)
Q Consensus        11 ~p~~~~~nwvks~Li~~~~~~~-~~VLDlGCG~G~~l~k~~~~~~~~-v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~   88 (357)
                      +...|+-.|.+...-.--+... .+|||||||+|..+.++++.++.. ++|+|.|+.+++.|+...+..+....++|.++
T Consensus        46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~  125 (227)
T KOG1271|consen   46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL  125 (227)
T ss_pred             cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence            4456777887654431112333 499999999999999998887654 99999999999999988877765556999999


Q ss_pred             CCCCCchhhhhhhcCCcccEEEEccchhhc----cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc--hHHHHHHHHhHHh
Q 018352           89 DPCAENFETQMQEKANQADLVCCFQHLQMC----FETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQKNVEA  162 (357)
Q Consensus        89 D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~----fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~--~~i~~~~~~~~~~  162 (357)
                      |++...+      ..++||+|.--..+.-+    -....++...+..+.+.|+|||+|++|.+|.  +++.+.+.+..-.
T Consensus       126 DI~~~~~------~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~  199 (227)
T KOG1271|consen  126 DITDPDF------LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFE  199 (227)
T ss_pred             eccCCcc------cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeE
Confidence            9998765      34667776543322110    1122334568899999999999999999987  6677666543111


Q ss_pred             hhcCCCCCCCCCCCCccCCccEEEEe
Q 018352          163 YHNRSSSMKPNLVPNCIRSESYVITF  188 (357)
Q Consensus       163 ~~~~~~~~~~~~fgn~i~~~~y~i~f  188 (357)
                      ++. .-+++.+.||.+.++.+.+|.|
T Consensus       200 ~~~-tvp~ptF~FgG~~G~tvt~vaF  224 (227)
T KOG1271|consen  200 YLS-TVPTPTFMFGGSVGSTVTSVAF  224 (227)
T ss_pred             EEE-eeccceEEeccccccEEEEEEE
Confidence            111 1122234555555555555554

>PLN02244 tocopherol O-methyltransferase

Probab=99.65  E-value=2.4e-15  Score=146.95  Aligned_cols=109  Identities=22%  Similarity=0.246  Sum_probs=92.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.+..+...++.|+++|+...++      .+++||+|
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~------~~~~FD~V  190 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF------EDGQFDLV  190 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC------CCCCccEE
Confidence            457899999999999888877764569999999999999999988766554579999999988776      56899999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +|..++|+ +.   +..+++++++++|||||+|++++..
T Consensus       191 ~s~~~~~h-~~---d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        191 WSMESGEH-MP---DKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             EECCchhc-cC---CHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99998888 43   3568999999999999999988644

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.65  E-value=7.5e-16  Score=123.97  Aligned_cols=96  Identities=27%  Similarity=0.489  Sum_probs=78.5

Q ss_pred             EEEECCCCChhHHHHHHhc----CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           35 VCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        35 VLDlGCG~G~~l~k~~~~~----~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      |||+|||+|..+..+....    ..+++|+|+|++||+.|+++....+.  +++|+++|+...+.      ..++||+|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~------~~~~~D~v~   72 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF------SDGKFDLVV   72 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH------HSSSEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc------cCCCeeEEE
Confidence            7999999999888887652    26999999999999999999876433  78999999977443      467999999


Q ss_pred             Eccc-hhhccCCHHHHHHHHHHHHhcccCCc
Q 018352          111 CFQH-LQMCFETEERARRLLQNVSSLLKPGG  140 (357)
Q Consensus       111 ~~~~-lh~~fes~~~~~~~L~~i~~~LkpGG  140 (357)
                      |... +|| + +.++..++++++.++|+|||
T Consensus        73 ~~~~~~~~-~-~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   73 CSGLSLHH-L-SPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             E-TTGGGG-S-SHHHHHHHHHHHHHTEEEEE
T ss_pred             EcCCccCC-C-CHHHHHHHHHHHHHHhCCCC
Confidence            9655 998 6 78889999999999999998

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.65  E-value=5.5e-15  Score=140.01  Aligned_cols=174  Identities=20%  Similarity=0.221  Sum_probs=118.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++++.+|||||||.|+.+..+++....+|+|+.+|++..+.|+++.+..+....+++..+|...  +       +.+||.
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~--~-------~~~fD~  130 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD--L-------PGKFDR  130 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------S-SE
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc--c-------CCCCCE
Confidence            4589999999999999999888884569999999999999999999988776678999998643  2       348999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF  188 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f  188 (357)
                      |++..++.+ + ..+....+++++.++|||||.+++.+.....-..  ..      ...         .           
T Consensus       131 IvSi~~~Eh-v-g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~--~~------~~~---------~-----------  180 (273)
T PF02353_consen  131 IVSIEMFEH-V-GRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPY--HA------ERR---------S-----------  180 (273)
T ss_dssp             EEEESEGGG-T-CGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHH--HH------CTT---------C-----------
T ss_pred             EEEEechhh-c-ChhHHHHHHHHHHHhcCCCcEEEEEecccccccc--hh------hcC---------C-----------
Confidence            999986666 2 2466789999999999999999876433321100  00      000         0           


Q ss_pred             ecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHHHHHH
Q 018352          189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGML  255 (357)
Q Consensus       189 ~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~~~~~  255 (357)
                            -..|-.+|.|        ...++.+...+...+++.||+++...++...|......|...+
T Consensus       181 ------~~~~i~kyiF--------Pgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~~W~~~f  233 (273)
T PF02353_consen  181 ------SSDFIRKYIF--------PGGYLPSLSEILRAAEDAGLEVEDVENLGRHYARTLRAWRENF  233 (273)
T ss_dssp             ------CCHHHHHHTS--------TTS---BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHH
T ss_pred             ------CceEEEEeeC--------CCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHHHHHHHHH
Confidence                  0023344544        1125678888999999999999999999999988766665544

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00740 methyltransferase, putative

Probab=99.64  E-value=4.6e-15  Score=137.69  Aligned_cols=113  Identities=21%  Similarity=0.233  Sum_probs=93.1

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~  100 (357)
                      +...+..++.+|||+|||+|..+..+++.   +..+++|+|+|+.|++.|+++.+......+++++++|+...++     
T Consensus        46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----  120 (239)
T TIGR00740        46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----  120 (239)
T ss_pred             HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----
Confidence            44555667889999999999888777664   4568999999999999999998765434468999999977554     


Q ss_pred             hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                         ..+|+|+|.+++|| + +.++...++++++++|+|||.|+++.
T Consensus       121 ---~~~d~v~~~~~l~~-~-~~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       121 ---KNASMVILNFTLQF-L-PPEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             ---CCCCEEeeecchhh-C-CHHHHHHHHHHHHHhcCCCeEEEEee
Confidence               35899999999999 4 45567899999999999999999884

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.64  E-value=1.6e-15  Score=139.57  Aligned_cols=107  Identities=18%  Similarity=0.227  Sum_probs=88.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.|+++.+.... .+++++.+|+...++      ++++||
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~------~~~~fD  116 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPF------DDNSFD  116 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCC------CCCCcc
Confidence            46789999999999888877765  346999999999999999998865443 368999999877655      457899


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +|++.+++|+ +.   +..++++++.++|+|||++++..+
T Consensus       117 ~V~~~~~l~~-~~---~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       117 YVTIGFGLRN-VP---DYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             EEEEeccccc-CC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence            9999998888 43   345789999999999999987743

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.64  E-value=7.1e-15  Score=145.69  Aligned_cols=196  Identities=18%  Similarity=0.191  Sum_probs=134.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      +.++.+|||||||+|+.+..+++....+|+|+|+|+++++.|+++.+..    .+++..+|...  +       .++||+
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~--l-------~~~fD~  231 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRD--L-------NGQFDR  231 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhh--c-------CCCCCE
Confidence            4578899999999999888777665569999999999999999988533    57788888643  1       368999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF  188 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f  188 (357)
                      |++...+++ + .......+++.+.++|||||++++.+......             .                      
T Consensus       232 Ivs~~~~eh-v-g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~-------------~----------------------  274 (383)
T PRK11705        232 IVSVGMFEH-V-GPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKT-------------D----------------------  274 (383)
T ss_pred             EEEeCchhh-C-ChHHHHHHHHHHHHHcCCCcEEEEEEccCCCC-------------C----------------------
Confidence            999888877 3 34556789999999999999999875432110             0                      


Q ss_pred             ecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHHHHHHHhcCCCCCCCCCC
Q 018352          189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGR  268 (357)
Q Consensus       189 ~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~g~  268 (357)
                          .....|-.+|.|-        ..++.+...+.+.++ .||++....+|...|......|...++.....+...-|.
T Consensus       275 ----~~~~~~i~~yifp--------~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~~~~~~~~~~  341 (383)
T PRK11705        275 ----TNVDPWINKYIFP--------NGCLPSVRQIAQASE-GLFVMEDWHNFGADYDRTLMAWHENFEAAWPELADNYSE  341 (383)
T ss_pred             ----CCCCCCceeeecC--------CCcCCCHHHHHHHHH-CCcEEEEEecChhhHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence                0001233455551        124567777777655 699999999999999887666554433211111111232


Q ss_pred             CChhHHHHHhhheeEEEEe
Q 018352          269 LLPRSYDVLGLYSTFIFQK  287 (357)
Q Consensus       269 l~~~e~e~~~lY~~f~F~K  287 (357)
                      --.+.|+..-.|+.-.|+.
T Consensus       342 ~~~r~w~~yl~~~~~~F~~  360 (383)
T PRK11705        342 RFYRMWRYYLLSCAGAFRA  360 (383)
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            2345788777776655544

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.64  E-value=2.2e-15  Score=129.80  Aligned_cols=100  Identities=26%  Similarity=0.429  Sum_probs=79.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||.|..+..+...+. +|+|+|+|+.+++.       .    ...+...+......      ..++||+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-------~----~~~~~~~~~~~~~~------~~~~fD~   81 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-------R----NVVFDNFDAQDPPF------PDGSFDL   81 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-------T----TSEEEEEECHTHHC------HSSSEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-------h----hhhhhhhhhhhhhc------cccchhh
Confidence            46789999999999988888866666 99999999999987       1    22223332222112      4689999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      |+|..++|| +.   +...+|++++++|||||++++++++..
T Consensus        82 i~~~~~l~~-~~---d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   82 IICNDVLEH-LP---DPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             EEEESSGGG-SS---HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             HhhHHHHhh-cc---cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            999999999 43   588999999999999999999998864

...

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.64  E-value=4.6e-15  Score=135.94  Aligned_cols=149  Identities=19%  Similarity=0.212  Sum_probs=113.9

Q ss_pred             EEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEc
Q 018352           34 TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (357)
Q Consensus        34 ~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~  112 (357)
                      +|||||||+|..+..++.. +..+++|+|+|+++++.|+++.+..+...++.++..|....++       .++||+|++.
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------~~~fD~I~~~   74 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------PDTYDLVFGF   74 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------CCCCCEeehH
Confidence            7999999999988888765 3468999999999999999998776555678999999866543       3589999999


Q ss_pred             cchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEeeccc
Q 018352          113 QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE  192 (357)
Q Consensus       113 ~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~~~  192 (357)
                      .++|+ +.   +...++++++++|||||++++..+..+.                       +.        .       
T Consensus        75 ~~l~~-~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~-----------------------~~--------~-------  112 (224)
T smart00828       75 EVIHH-IK---DKMDLFSNISRHLKDGGHLVLADFIANL-----------------------LS--------A-------  112 (224)
T ss_pred             HHHHh-CC---CHHHHHHHHHHHcCCCCEEEEEEccccc-----------------------Cc--------c-------
Confidence            98887 33   3578999999999999999987543210                       00        0       


Q ss_pred             CCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHh
Q 018352          193 EKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD  246 (357)
Q Consensus       193 ~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~  246 (357)
                           .+.        .  ....|+.+.+.+.+++++.||+++...++..-|.+
T Consensus       113 -----~~~--------~--~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~  151 (224)
T smart00828      113 -----IEH--------E--ETTSYLVTREEWAELLARNNLRVVEGVDASLEIAN  151 (224)
T ss_pred             -----ccc--------c--ccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhh
Confidence                 000        0  00124567788999999999999999988777755

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.62  E-value=5.1e-15  Score=133.78  Aligned_cols=104  Identities=18%  Similarity=0.149  Sum_probs=86.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|++.|+++.+..+. .++++..+|+...++       .++||+|+
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~-------~~~fD~I~  100 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTF-------DGEYDFIL  100 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCc-------CCCcCEEE
Confidence            56799999999998888777665 4999999999999999998776543 247888899866443       35799999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |..++|+ + +.+....+++++.++|+|||++++.
T Consensus       101 ~~~~~~~-~-~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        101 STVVLMF-L-EAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             Eecchhh-C-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            9999987 4 5667889999999999999997654

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.61  E-value=2e-14  Score=139.34  Aligned_cols=105  Identities=19%  Similarity=0.095  Sum_probs=84.3

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||||||+|..+..++..+...|+|+|+|+.++.+++...+..+...++.|+.+|+...++       .++||+|+
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~FD~V~  194 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKAFDTVF  194 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCCcCEEE
Confidence            57899999999999888888877778999999999998765543322112368999999866543       47899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |..++|| .   .+...++++++++|+|||.|++.+
T Consensus       195 s~~vl~H-~---~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        195 SMGVLYH-R---RSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             ECChhhc-c---CCHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999888 3   246678999999999999999874

>PRK05785 hypothetical protein; Provisional

Probab=99.61  E-value=3.8e-15  Score=137.55  Aligned_cols=102  Identities=13%  Similarity=0.087  Sum_probs=79.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..+......+|+|+|+|++||+.|+++.         .++++|+...++      ++++||+
T Consensus        49 ~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~------~d~sfD~  113 (226)
T PRK05785         49 CGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPF------RDKSFDV  113 (226)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCC------CCCCEEE
Confidence            3457899999999997777766553359999999999999997642         357888887776      5789999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCc-EEEEEeCCc
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDS  149 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG-~fi~t~pd~  149 (357)
                      |+|.+++|+ +.   +..+++++++++|||.+ .+-+..|+.
T Consensus       114 v~~~~~l~~-~~---d~~~~l~e~~RvLkp~~~ile~~~p~~  151 (226)
T PRK05785        114 VMSSFALHA-SD---NIEKVIAEFTRVSRKQVGFIAMGKPDN  151 (226)
T ss_pred             EEecChhhc-cC---CHHHHHHHHHHHhcCceEEEEeCCCCc
Confidence            999999998 53   46678999999999954 333335554

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.58  E-value=2.7e-14  Score=128.90  Aligned_cols=103  Identities=18%  Similarity=0.194  Sum_probs=83.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|++.++++....+.  ++.+..+|+...++       .++||+|+
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~fD~I~   99 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAAL-------NEDYDFIF   99 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccc-------cCCCCEEE
Confidence            45799999999998888777665 4999999999999999988766543  46777788754333       35799999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |..++|+ + +.+....+++++.++|+|||++++.
T Consensus       100 ~~~~~~~-~-~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       100 STVVFMF-L-QAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             Eeccccc-C-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            9999987 4 4567889999999999999996654

Part of a tellurite-reducing operon tehA and tehB

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.58  E-value=9.2e-14  Score=141.46  Aligned_cols=159  Identities=20%  Similarity=0.220  Sum_probs=115.5

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..++.....+++|+|+|+.|++.|+++....  ..++.|.++|+...++      ++++||+|
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~--~~~v~~~~~d~~~~~~------~~~~fD~I  336 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR--KCSVEFEVADCTKKTY------PDNSFDVI  336 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC--CCceEEEEcCcccCCC------CCCCEEEE
Confidence            467899999999998887776654568999999999999998876543  2368999999987665      45789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEee
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFE  189 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~  189 (357)
                      +|..+++| +.   +...++++++++|||||.++++.+.....               .       ...           
T Consensus       337 ~s~~~l~h-~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~---------------~-------~~~-----------  379 (475)
T PLN02336        337 YSRDTILH-IQ---DKPALFRSFFKWLKPGGKVLISDYCRSPG---------------T-------PSP-----------  379 (475)
T ss_pred             EECCcccc-cC---CHHHHHHHHHHHcCCCeEEEEEEeccCCC---------------C-------CcH-----------
Confidence            99998888 32   45688999999999999999885432100               0       000           


Q ss_pred             cccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhH
Q 018352          190 VEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR  248 (357)
Q Consensus       190 ~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~  248 (357)
                             .+. .|   +....    -.+.+.+.+.++++++||+.+...++++-|....
T Consensus       380 -------~~~-~~---~~~~g----~~~~~~~~~~~~l~~aGF~~i~~~d~~~~~~~~~  423 (475)
T PLN02336        380 -------EFA-EY---IKQRG----YDLHDVQAYGQMLKDAGFDDVIAEDRTDQFLQVL  423 (475)
T ss_pred             -------HHH-HH---HHhcC----CCCCCHHHHHHHHHHCCCeeeeeecchHHHHHHH
Confidence                   000 00   00000    0234667899999999999999888877776543

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.58  E-value=2.3e-14  Score=133.83  Aligned_cols=104  Identities=17%  Similarity=0.246  Sum_probs=85.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      +..+|||+|||+|..+..+... ..+++|+|+|+.|++.|+++..      ...++++|+...++      .+++||+|+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~------~~~~fD~V~  108 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPL------ATATFDLAW  108 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcC------CCCcEEEEE
Confidence            4679999999999877777554 4699999999999999988753      24678999877665      467899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~  151 (357)
                      +..++|| +.   +...++.++.++|+|||+|+++++....
T Consensus       109 s~~~l~~-~~---d~~~~l~~~~~~Lk~gG~l~~~~~~~~~  145 (251)
T PRK10258        109 SNLAVQW-CG---NLSTALRELYRVVRPGGVVAFTTLVQGS  145 (251)
T ss_pred             ECchhhh-cC---CHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence            9999998 32   4678899999999999999999877644

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.57  E-value=6.9e-14  Score=124.35  Aligned_cols=165  Identities=19%  Similarity=0.235  Sum_probs=118.1

Q ss_pred             HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      .+|...++++.+|||||||.|..+..+........+|+|++++.+..|.++        -+.++++|+... +. .+  +
T Consensus         5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~g-L~-~f--~   72 (193)
T PF07021_consen    5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEG-LA-DF--P   72 (193)
T ss_pred             HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHh-Hh-hC--C
Confidence            456777899999999999999777777666777999999999999988776        456799998652 21 11  5


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCc
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSE  182 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~  182 (357)
                      +++||.|+++.+++.    ...+..+|+++   |+-|...|+++||.-....|++=..     +|..             
T Consensus        73 d~sFD~VIlsqtLQ~----~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~-----~Grm-------------  127 (193)
T PF07021_consen   73 DQSFDYVILSQTLQA----VRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLL-----RGRM-------------  127 (193)
T ss_pred             CCCccEEehHhHHHh----HhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHh-----cCCC-------------
Confidence            799999999998887    34567777776   4558899999999876655553110     1110             


Q ss_pred             cEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCch
Q 018352          183 SYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (357)
Q Consensus       183 ~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~  241 (357)
                            +. .+.+     .|.|+  + .  .+-.+.+...|+++|++.|+++++...+.
T Consensus       128 ------Pv-t~~l-----Py~WY--d-T--PNih~~Ti~DFe~lc~~~~i~I~~~~~~~  169 (193)
T PF07021_consen  128 ------PV-TKAL-----PYEWY--D-T--PNIHLCTIKDFEDLCRELGIRIEERVFLD  169 (193)
T ss_pred             ------CC-CCCC-----CCccc--C-C--CCcccccHHHHHHHHHHCCCEEEEEEEEc
Confidence                  00 0111     25553  1 1  12247788899999999999999987664

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.57  E-value=2.2e-14  Score=134.48  Aligned_cols=107  Identities=21%  Similarity=0.171  Sum_probs=85.2

Q ss_pred             HHHHHcC-CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh
Q 018352           23 ALIKIYS-HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (357)
Q Consensus        23 ~Li~~~~-~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~  100 (357)
                      .++..+. .++.+|||||||+|..+..+... +..+|+|+|+|+.|++.|+++        +++|+++|+....      
T Consensus        20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~------   85 (255)
T PRK14103         20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK------   85 (255)
T ss_pred             HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC------
Confidence            3444443 36789999999999887777665 356899999999999999653        4678999986432      


Q ss_pred             hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                       ..++||+|+|+.++|| +.   +...++++++++|||||++++++++
T Consensus        86 -~~~~fD~v~~~~~l~~-~~---d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103         86 -PKPDTDVVVSNAALQW-VP---EHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             -CCCCceEEEEehhhhh-CC---CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence             2478999999999999 43   3567899999999999999998765

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.56  E-value=7e-16  Score=123.40  Aligned_cols=98  Identities=27%  Similarity=0.327  Sum_probs=62.2

Q ss_pred             EEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccc
Q 018352           36 CDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQH  114 (357)
Q Consensus        36 LDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~  114 (357)
                      ||+|||+|..+..+... +..+|+|+|+|+.|++.|++++...... .......+.......    ...++||+|++..+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~fD~V~~~~v   75 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDY----DPPESFDLVVASNV   75 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---C----CC----SEEEEE-T
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhc----ccccccceehhhhh
Confidence            79999999888888776 5669999999999999999888765321 223333333221110    01259999999999


Q ss_pred             hhhccCCHHHHHHHHHHHHhcccCCcEE
Q 018352          115 LQMCFETEERARRLLQNVSSLLKPGGYF  142 (357)
Q Consensus       115 lh~~fes~~~~~~~L~~i~~~LkpGG~f  142 (357)
                      +||+    ++.+.++++++++|+|||+|
T Consensus        76 l~~l----~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   76 LHHL----EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             TS------S-HHHHHHHHTTT-TSS-EE
T ss_pred             Hhhh----hhHHHHHHHHHHHcCCCCCC
Confidence            9993    56779999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.56  E-value=3.2e-13  Score=123.61  Aligned_cols=102  Identities=21%  Similarity=0.187  Sum_probs=82.3

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|..+..++... .+++|+|+|++|++.|+++........++.|.++|+...         .++||+|+
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~fD~ii  124 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------CGEFDIVV  124 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------CCCcCEEE
Confidence            57899999999998888776654 499999999999999999987654334689999998652         26899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEE
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~  144 (357)
                      +..++++ + +.+....+++++.+++++++++.+
T Consensus       125 ~~~~l~~-~-~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       125 CMDVLIH-Y-PASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             EhhHHHh-C-CHHHHHHHHHHHHHHhCCCEEEEE
Confidence            9988877 5 456678899999999987655543

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.55  E-value=2.9e-14  Score=133.55  Aligned_cols=103  Identities=29%  Similarity=0.368  Sum_probs=85.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||||||+|..+..++.. +..+++|+|+|+.|++.|+++..      ++.|+.+|+....       ...+||+
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~------~~~~~~~d~~~~~-------~~~~fD~   96 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP------DCQFVEADIASWQ-------PPQALDL   96 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC------CCeEEECchhccC-------CCCCccE
Confidence            46789999999999888777665 45799999999999999988753      4788999986532       2468999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |+|..++|+ +.   +...+++++.++|||||+|++++|+.
T Consensus        97 v~~~~~l~~-~~---d~~~~l~~~~~~LkpgG~~~~~~~~~  133 (258)
T PRK01683         97 IFANASLQW-LP---DHLELFPRLVSLLAPGGVLAVQMPDN  133 (258)
T ss_pred             EEEccChhh-CC---CHHHHHHHHHHhcCCCcEEEEECCCC
Confidence            999999998 43   35678999999999999999987764

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.54  E-value=2e-14  Score=132.40  Aligned_cols=170  Identities=18%  Similarity=0.246  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHc--CCC------CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-----CCCceeE
Q 018352           18 EFAKTALIKIY--SHP------YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----RKNFIAE   84 (357)
Q Consensus        18 nwvks~Li~~~--~~~------~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-----~~~~~v~   84 (357)
                      .|+...+.++.  ..|      +.+|||+|||+|-....+++.+ +.|+|||+++.||+.|++.....     +..++++
T Consensus        68 ~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~  146 (282)
T KOG1270|consen   68 PFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLE  146 (282)
T ss_pred             hHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeee
Confidence            45556665554  223      4789999999997777777766 59999999999999999984322     2234566


Q ss_pred             EEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhh
Q 018352           85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYH  164 (357)
Q Consensus        85 f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~  164 (357)
                      |.+.|+..         ..++||+|+|.-+++|    .++++.+++.+.++|||||.+++++.|...+..          
T Consensus       147 ~~~~~~E~---------~~~~fDaVvcsevleH----V~dp~~~l~~l~~~lkP~G~lfittinrt~lS~----------  203 (282)
T KOG1270|consen  147 YEDTDVEG---------LTGKFDAVVCSEVLEH----VKDPQEFLNCLSALLKPNGRLFITTINRTILSF----------  203 (282)
T ss_pred             hhhcchhh---------cccccceeeeHHHHHH----HhCHHHHHHHHHHHhCCCCceEeeehhhhHHHh----------
Confidence            66666644         2356999999997776    677899999999999999999999888643311          


Q ss_pred             cCCCCCCCCCCCCccCCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCc
Q 018352          165 NRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (357)
Q Consensus       165 ~~~~~~~~~~fgn~i~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f  240 (357)
                                +++        |           |...|...+.--.+..+|-++.+..+..+..+.|+.+.....+
T Consensus       204 ----------~~~--------i-----------~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~G~  250 (282)
T KOG1270|consen  204 ----------AGT--------I-----------FLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVGE  250 (282)
T ss_pred             ----------hcc--------c-----------cHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhhcc
Confidence                      111        1           1111111111112334567889999999999988888776654

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.53  E-value=2e-13  Score=122.43  Aligned_cols=115  Identities=19%  Similarity=0.124  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (357)
Q Consensus        18 nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~   96 (357)
                      ..+.+..+..+++++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++.+..+.. +++|+++|+..... 
T Consensus        32 ~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~-  109 (187)
T PRK00107         32 HILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ-  109 (187)
T ss_pred             HHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-
Confidence            44556667777778899999999999877777653 5679999999999999999998877553 48999999866332 


Q ss_pred             hhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus        97 ~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                            .++||+|+|..     +   .....+++.++++|||||+|++..+.
T Consensus       110 ------~~~fDlV~~~~-----~---~~~~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107        110 ------EEKFDVVTSRA-----V---ASLSDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             ------CCCccEEEEcc-----c---cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence                  46899999864     2   13567899999999999999988544

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.53  E-value=7.6e-14  Score=133.26  Aligned_cols=104  Identities=17%  Similarity=0.209  Sum_probs=86.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|+++.+..+.  ++.+...|+....+       +++||+|+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-------~~~fD~I~  189 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-------QEEYDFIL  189 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-------cCCccEEE
Confidence            34599999999999888887765 5999999999999999998876644  67888888765433       47899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +..++|+ + +.++...+++++.++|+|||++++..
T Consensus       190 ~~~vl~~-l-~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        190 STVVLMF-L-NRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             Ecchhhh-C-CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999988 4 56678899999999999999977653

>TIGR03438 probable methyltransferase

Probab=99.53  E-value=8.7e-13  Score=126.84  Aligned_cols=113  Identities=20%  Similarity=0.183  Sum_probs=83.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC-chhhhhhhcCCc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~-~~~~~l~~~~~~  105 (357)
                      ++++.+|||+|||+|..+..++.+.  ..+|+|+|+|++||+.|+++........++.++++|.... .+....  ....
T Consensus        61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~  138 (301)
T TIGR03438        61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGR  138 (301)
T ss_pred             hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCC
Confidence            4567899999999999888887763  4689999999999999999876533334678899998752 221100  0012


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ..++++...+++ | +.+++.++|++++++|+|||.|++.
T Consensus       139 ~~~~~~gs~~~~-~-~~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       139 RLGFFPGSTIGN-F-TPEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             eEEEEecccccC-C-CHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            334444456777 6 5777899999999999999999865

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.53  E-value=9.5e-14  Score=131.13  Aligned_cols=125  Identities=22%  Similarity=0.245  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHHc-CCCCCEEEEECCCCChhHH----HHHHh-c-----CCeEEEEeCChHHHHHHHHHhHh-----
Q 018352           13 HHRLYEFAKTALIKIY-SHPYVTVCDLYCGAGVDVD----KWETA-L-----IANYIGIDVATSGIGEARDTWEN-----   76 (357)
Q Consensus        13 ~~~~~nwvks~Li~~~-~~~~~~VLDlGCG~G~~l~----k~~~~-~-----~~~v~GiDiS~~~l~~A~~r~~~-----   76 (357)
                      ...+.+++...++... ..++.+|+|+|||+|....    .+... +     ..+|+|+|+|+.||+.|++..-.     
T Consensus        80 ~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~  159 (264)
T smart00138       80 FEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELE  159 (264)
T ss_pred             HHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHh
Confidence            3334555555555432 2245799999999996432    22222 1     34899999999999999885310     


Q ss_pred             -c--------------------CCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhc
Q 018352           77 -Q--------------------RKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL  135 (357)
Q Consensus        77 -~--------------------~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~  135 (357)
                       .                    ....++.|.++|+...+.      +.++||+|+|.+++|| | +.+...+++++++++
T Consensus       160 ~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~------~~~~fD~I~crnvl~y-f-~~~~~~~~l~~l~~~  231 (264)
T smart00138      160 DLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP------PLGDFDLIFCRNVLIY-F-DEPTQRKLLNRFAEA  231 (264)
T ss_pred             cCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC------ccCCCCEEEechhHHh-C-CHHHHHHHHHHHHHH
Confidence             0                    011258899999987654      4578999999999999 7 566788999999999


Q ss_pred             ccCCcEEEEE
Q 018352          136 LKPGGYFLGI  145 (357)
Q Consensus       136 LkpGG~fi~t  145 (357)
                      |+|||++++.
T Consensus       232 L~pGG~L~lg  241 (264)
T smart00138      232 LKPGGYLFLG  241 (264)
T ss_pred             hCCCeEEEEE
Confidence            9999999875

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.53  E-value=9.6e-14  Score=135.03  Aligned_cols=104  Identities=18%  Similarity=0.177  Sum_probs=85.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||||||+|..+..+++. +..+|+|+|+|++|++.|+++....    +++++.+|+...++      .+++||+
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----~i~~i~gD~e~lp~------~~~sFDv  181 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIIEGDAEDLPF------PTDYADR  181 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----CCeEEeccHHhCCC------CCCceeE
Confidence            36789999999999877777654 4468999999999999999876533    57889999877665      4578999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |++..++|+ +.+   ..+++++++++|||||+++++.+
T Consensus       182 VIs~~~L~~-~~d---~~~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        182 YVSAGSIEY-WPD---PQRGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             EEEcChhhh-CCC---HHHHHHHHHHhcCCCcEEEEEEe
Confidence            999999998 543   34689999999999999987643

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.53  E-value=1.4e-13  Score=125.07  Aligned_cols=122  Identities=12%  Similarity=0.108  Sum_probs=90.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCcee
Q 018352            5 PIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIA   83 (357)
Q Consensus         5 ~~~r~~~p~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v   83 (357)
                      +.++.+.......+++...+ . .++++.+|||+|||+|..+..+... +..+++|+|+|++|++.|+++..      ++
T Consensus        19 ~rn~~~~~~~~~~~~~~~~l-~-~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~   90 (204)
T TIGR03587        19 DRNSRQSLVAAKLAMFARAL-N-RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NI   90 (204)
T ss_pred             hccccHHHHHHHHHHHHHHH-H-hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CC
Confidence            34444444444334444433 2 2456789999999999888877665 56799999999999999988653      35


Q ss_pred             EEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           84 EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        84 ~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+.++|+.. ++      .+++||+|+|..++|| + +.+...++++++.+++  ++++++.
T Consensus        91 ~~~~~d~~~-~~------~~~sfD~V~~~~vL~h-l-~p~~~~~~l~el~r~~--~~~v~i~  141 (204)
T TIGR03587        91 NIIQGSLFD-PF------KDNFFDLVLTKGVLIH-I-NPDNLPTAYRELYRCS--NRYILIA  141 (204)
T ss_pred             cEEEeeccC-CC------CCCCEEEEEECChhhh-C-CHHHHHHHHHHHHhhc--CcEEEEE
Confidence            678888876 44      4689999999999988 4 5677889999999998  4566665

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.51  E-value=1e-13  Score=124.27  Aligned_cols=103  Identities=18%  Similarity=0.251  Sum_probs=83.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      +..++||||||.|+++..++..+. .|+++|+|+.+|+.+++..+..+.  +++..+.|+....+       ++.||+|+
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~-------~~~yD~I~   99 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDF-------PEEYDFIV   99 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS--------TTTEEEEE
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhccc-------cCCcCEEE
Confidence            567999999999999999988888 899999999999999887766543  58889999877555       36899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +..+++| + ..+...++++++.+.++|||++++.
T Consensus       100 st~v~~f-L-~~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen  100 STVVFMF-L-QRELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             EESSGGG-S--GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEecc-C-CHHHHHHHHHHHHhhcCCcEEEEEE
Confidence            9888887 4 4667888999999999999998875

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.51  E-value=1.2e-13  Score=125.43  Aligned_cols=123  Identities=17%  Similarity=0.084  Sum_probs=91.1

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCC-CCCchhhhhhhcCC
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKAN  104 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~-~~~~~~~~l~~~~~  104 (357)
                      .+..++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++....+. .++.|+++|+ ...+  ..+  ..+
T Consensus        36 ~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~--~~~--~~~  110 (202)
T PRK00121         36 LFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLL--DMF--PDG  110 (202)
T ss_pred             HcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHH--HHc--Ccc
Confidence            33446789999999999888877665 456899999999999999998876543 3689999998 3322  111  357


Q ss_pred             cccEEEEccchhhccC-C---HHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352          105 QADLVCCFQHLQMCFE-T---EERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fe-s---~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~  154 (357)
                      +||+|++.+..++... +   ......++++++++|||||+|++++++...+..
T Consensus       111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~  164 (202)
T PRK00121        111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEY  164 (202)
T ss_pred             ccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence            8999999876544110 0   011467899999999999999999888765443

>TIGR00452 methyltransferase, putative

Probab=99.50  E-value=1.8e-13  Score=131.93  Aligned_cols=106  Identities=15%  Similarity=0.008  Sum_probs=81.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|..+..++..+...|+|+|+|+.|+.+++...+......++.+..+++...+.       ..+||+|+
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~FD~V~  193 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAFDTVF  193 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCcCEEE
Confidence            57899999999998887777777778999999999998764432211112257777777655432       35799999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |..+++| .   .+...+|++++++|||||.|++.+.
T Consensus       194 s~gvL~H-~---~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       194 SMGVLYH-R---KSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             Ecchhhc-c---CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence            9998888 3   3456789999999999999998754

Known examples to date are restricted to the proteobacteria.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.50  E-value=2.3e-13  Score=124.74  Aligned_cols=107  Identities=21%  Similarity=0.321  Sum_probs=88.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ...+|||+|||+|..+..++... ..+++|+|+|+.+++.++++...     ++.++.+|+...++      .+++||+|
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~------~~~~fD~v  102 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----NVQFICGDAEKLPL------EDSSFDLI  102 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----CCeEEecchhhCCC------CCCceeEE
Confidence            34689999999998888777663 45799999999999999887652     57889999877655      45789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      ++..++|+ +   .+...+++++.++|+|||.+++.++....+
T Consensus       103 i~~~~l~~-~---~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~  141 (240)
T TIGR02072       103 VSNLALQW-C---DDLSQALSELARVLKPGGLLAFSTFGPGTL  141 (240)
T ss_pred             EEhhhhhh-c---cCHHHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence            99999998 3   246679999999999999999998776544

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.50  E-value=1.6e-13  Score=122.20  Aligned_cols=102  Identities=24%  Similarity=0.269  Sum_probs=85.4

Q ss_pred             CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeE-EEEcCCCCCc-hhhhhhhcCCcccEEE
Q 018352           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAE-FFEADPCAEN-FETQMQEKANQADLVC  110 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~-f~~~D~~~~~-~~~~l~~~~~~FDlV~  110 (357)
                      ..||++|||+|.....+-..+..+|+++|.++.|-+.|.++++++... +++ |++++..+.+ +      .++++|+|+
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l------~d~s~DtVV  150 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQL------ADGSYDTVV  150 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCccc------ccCCeeeEE
Confidence            457999999997766554457889999999999999999998876433 455 9999998765 4      579999999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |.+++    .+.+++.+.|+|+.++|||||++++.
T Consensus       151 ~TlvL----CSve~~~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  151 CTLVL----CSVEDPVKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             EEEEE----eccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            99954    45678899999999999999999988

>PRK06202 hypothetical protein; Provisional

Probab=99.49  E-value=6.2e-13  Score=122.88  Aligned_cols=104  Identities=18%  Similarity=0.129  Sum_probs=76.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHh----c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~----~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      ++.+|||+|||+|..+..++..    + ..+|+|+|+|+.|++.|+++....    ++.+.+.++...+.      .+++
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~------~~~~  129 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVA------EGER  129 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccc------cCCC
Confidence            5679999999999876665432    2 248999999999999998886543    35566665544333      3578


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ||+|+|++++|| +. .++..++++++.++++  |.+++....
T Consensus       130 fD~V~~~~~lhh-~~-d~~~~~~l~~~~r~~~--~~~~i~dl~  168 (232)
T PRK06202        130 FDVVTSNHFLHH-LD-DAEVVRLLADSAALAR--RLVLHNDLI  168 (232)
T ss_pred             ccEEEECCeeec-CC-hHHHHHHHHHHHHhcC--eeEEEeccc
Confidence            999999999999 54 3456789999999998  444444333

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.48  E-value=4.3e-13  Score=127.04  Aligned_cols=101  Identities=19%  Similarity=0.330  Sum_probs=80.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-c---CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-L---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~---~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ...+|||+|||+|..+..+... +   ...++|+|+|+.|++.|+++..      ++.|.++|+...++      .+++|
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~------~~~~~~~d~~~lp~------~~~sf  152 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP------QVTFCVASSHRLPF------ADQSL  152 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC------CCeEEEeecccCCC------cCCce
Confidence            5578999999999877776654 2   2379999999999999987752      57889999887766      56899


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~  154 (357)
                      |+|++.++-           ..++++.++|||||+|+..+|+...++.
T Consensus       153 D~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l~e  189 (272)
T PRK11088        153 DAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHLFE  189 (272)
T ss_pred             eEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcchHH
Confidence            999986631           2357889999999999999999876654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.48  E-value=1.7e-12  Score=107.03  Aligned_cols=105  Identities=13%  Similarity=0.037  Sum_probs=81.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ..++.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.|+++.+..+.. +++++..|+.....  .   ...+||
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~--~---~~~~~D   90 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALE--D---SLPEPD   90 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccCh--h---hcCCCC
Confidence            345789999999999998888776 4479999999999999999887765332 57888888753211  0   235899


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +|++....+       ...++++++.+.|+|||+|+++.
T Consensus        91 ~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        91 RVFIGGSGG-------LLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             EEEECCcch-------hHHHHHHHHHHHcCCCCEEEEEe
Confidence            999866332       24588999999999999999875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.47  E-value=9e-13  Score=120.65  Aligned_cols=108  Identities=19%  Similarity=0.150  Sum_probs=84.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-----------CCCceeEEEEcCCCCCchhhh
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFETQ   98 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-----------~~~~~v~f~~~D~~~~~~~~~   98 (357)
                      +++.+|||+|||.|.++..++..+. +|+|+|+|+.+|+.|.+.....           ....+++++++|+...+..  
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--  109 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA--  109 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--
Confidence            4678999999999999998887766 8999999999999864422100           0123689999999875431  


Q ss_pred             hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        99 l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                         ..+.||.|+...++|+ + +.+....+++.+.++|||||++++.
T Consensus       110 ---~~~~fD~i~D~~~~~~-l-~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       110 ---DLGPVDAVYDRAALIA-L-PEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             ---cCCCcCEEEechhhcc-C-CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence               1357999998888876 5 6777888999999999999986655

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK06922 hypothetical protein; Provisional

Probab=99.46  E-value=4.2e-13  Score=138.58  Aligned_cols=108  Identities=23%  Similarity=0.277  Sum_probs=87.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc--hhhhhhhcCCccc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--FETQMQEKANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~--~~~~l~~~~~~FD  107 (357)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+  .++.++++|+...+  +      ++++||
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f------edeSFD  489 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF------EKESVD  489 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc------CCCCEE
Confidence            5789999999999877777654 56799999999999999998865442  26788899986644  3      457899


Q ss_pred             EEEEccchhhccC---------CHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          108 LVCCFQHLQMCFE---------TEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       108 lV~~~~~lh~~fe---------s~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +|++.+++|+++.         +.++..++++++.++|||||++++..
T Consensus       490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9999999997542         24678899999999999999999873

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.46  E-value=4.5e-13  Score=126.65  Aligned_cols=105  Identities=24%  Similarity=0.260  Sum_probs=84.7

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|||+|..+..++..  ...+|+|+|+|+.|++.|+++....... ++.|..+|+...++      .+++||
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~------~~~~fD  148 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPV------ADNSVD  148 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCC------CCCcee
Confidence            46889999999999766655443  2347999999999999999987665432 68899999877555      457899


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|++..++|+ ..   +...+++++.++|||||+|++.
T Consensus       149 ~Vi~~~v~~~-~~---d~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        149 VIISNCVINL-SP---DKERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             EEEEcCcccC-CC---CHHHHHHHHHHHcCCCcEEEEE
Confidence            9999998887 32   3457899999999999999986

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.46  E-value=7.2e-12  Score=120.98  Aligned_cols=105  Identities=21%  Similarity=0.333  Sum_probs=78.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcC----CCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~----~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ++.+|||+|||+|..+..+...+ .+|+|+|+|+.||+.|+++++...    ...++.|.++|+..  +       +++|
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~--l-------~~~f  213 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES--L-------SGKY  213 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh--c-------CCCc
Confidence            56899999999998888877664 589999999999999999986531    12357888888643  2       4789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|+|..++|| + ..+....+++.+.+ +.+||.++...|+
T Consensus       214 D~Vv~~~vL~H-~-p~~~~~~ll~~l~~-l~~g~liIs~~p~  252 (315)
T PLN02585        214 DTVTCLDVLIH-Y-PQDKADGMIAHLAS-LAEKRLIISFAPK  252 (315)
T ss_pred             CEEEEcCEEEe-c-CHHHHHHHHHHHHh-hcCCEEEEEeCCc
Confidence            99999998766 3 33455677888875 4667776655554

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.46  E-value=7.2e-12  Score=114.93  Aligned_cols=99  Identities=20%  Similarity=0.202  Sum_probs=78.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|++++.......++.|..+|...         ..++||+|
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---------~~~~fD~v  131 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---------LLGRFDTV  131 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---------ccCCcCEE
Confidence            4578999999999988888876654 7999999999999999988765433468899998421         24789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCc
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGG  140 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG  140 (357)
                      +|..++|+ + +.+....+++++.+.+++++
T Consensus       132 ~~~~~l~~-~-~~~~~~~~l~~l~~~~~~~~  160 (230)
T PRK07580        132 VCLDVLIH-Y-PQEDAARMLAHLASLTRGSL  160 (230)
T ss_pred             EEcchhhc-C-CHHHHHHHHHHHHhhcCCeE
Confidence            99999876 4 45567889999998775443

>PLN03075 nicotianamine synthase; Provisional

Probab=99.45  E-value=1.2e-12  Score=124.63  Aligned_cols=108  Identities=14%  Similarity=0.074  Sum_probs=87.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHh-cCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWEN-QRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~-~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +..+|+|||||.|+.+..++.+   +.++++|+|+++++++.|++.++. .+...+++|.++|+.+..-      ..+.|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~------~l~~F  196 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE------SLKEY  196 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc------ccCCc
Confidence            6689999999998666555442   556899999999999999999854 4444579999999976321      23689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |+|+|. ++|| | +.++..++++++++.|+|||++++-+.
T Consensus       197 DlVF~~-ALi~-~-dk~~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        197 DVVFLA-ALVG-M-DKEEKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             CEEEEe-cccc-c-ccccHHHHHHHHHHhcCCCcEEEEecc
Confidence            999999 9999 5 345678899999999999999998763

>PRK08317 hypothetical protein; Provisional

Probab=99.45  E-value=1.5e-12  Score=119.06  Aligned_cols=109  Identities=25%  Similarity=0.327  Sum_probs=88.2

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +.++.+|||+|||+|..+..++..  +..+++|+|+|+.+++.|+++....  ..++.+..+|+...++      ..++|
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~~~~   88 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF------PDGSF   88 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC------CCCCc
Confidence            356789999999999888877665  3569999999999999998883322  2368899999876555      45789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |+|++..++++ +   .+...+++++.++|+|||++++..++.
T Consensus        89 D~v~~~~~~~~-~---~~~~~~l~~~~~~L~~gG~l~~~~~~~  127 (241)
T PRK08317         89 DAVRSDRVLQH-L---EDPARALAEIARVLRPGGRVVVLDTDW  127 (241)
T ss_pred             eEEEEechhhc-c---CCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence            99999998887 3   246678999999999999999887653

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.45  E-value=2.4e-12  Score=113.59  Aligned_cols=111  Identities=18%  Similarity=0.213  Sum_probs=85.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCC-eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~-~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      +..+|||+|||+|.....++..... +++++|+|+.+++.|++..+.++... ++++..|+... +      ..++||+|
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~-~------~~~~fD~I  102 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA-L------PDGKFDLI  102 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT-C------CTTCEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc-c------cccceeEE
Confidence            5789999999999777777666443 79999999999999999998876543 89999998653 2      35899999


Q ss_pred             EEccchhhccC-CHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~~~lh~~fe-s~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +|+-.+|.... ..+..+++++.+.+.|+|||.|++.....
T Consensus       103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~  143 (170)
T PF05175_consen  103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH  143 (170)
T ss_dssp             EE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             EEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence            99987776331 23457899999999999999997765443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.44  E-value=1.3e-12  Score=119.97  Aligned_cols=105  Identities=25%  Similarity=0.322  Sum_probs=86.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++.+|||+|||+|..+..++...  ..+++|+|+++.+++.|+++........++.+..+|+....+      ..+.||+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~D~  124 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSFDA  124 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCccE
Confidence            56899999999998888887765  479999999999999999988654333468899999877554      3578999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |++.+++|+ +.   +...+++++.++|+|||++++.
T Consensus       125 I~~~~~l~~-~~---~~~~~l~~~~~~L~~gG~li~~  157 (239)
T PRK00216        125 VTIAFGLRN-VP---DIDKALREMYRVLKPGGRLVIL  157 (239)
T ss_pred             EEEeccccc-CC---CHHHHHHHHHHhccCCcEEEEE
Confidence            999998887 32   4667899999999999998875

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.44  E-value=3.2e-12  Score=117.89  Aligned_cols=107  Identities=22%  Similarity=0.283  Sum_probs=83.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||||||+|..+..+.+.+ .+++|+|+++.+++.|+++......  .+.+..+|......     ...++||+|+
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~fD~Ii  119 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA-----EHPGQFDVVT  119 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh-----hcCCCccEEE
Confidence            67899999999998777776654 5899999999999999988765432  56777777654321     1247899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |...+++ .   .+...+++++.+.|+|||+++++.++.
T Consensus       120 ~~~~l~~-~---~~~~~~l~~~~~~L~~gG~l~v~~~~~  154 (233)
T PRK05134        120 CMEMLEH-V---PDPASFVRACAKLVKPGGLVFFSTLNR  154 (233)
T ss_pred             EhhHhhc-c---CCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence            9887777 3   245678999999999999999987764

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.44  E-value=2.6e-12  Score=114.76  Aligned_cols=101  Identities=22%  Similarity=0.174  Sum_probs=79.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.++++.+..+.. +++++++|+....       ..++||+|
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-------~~~~fD~I  113 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-------HEEQFDVI  113 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-------ccCCccEE
Confidence            3789999999999777766554 3468999999999999999887766443 5899999986632       24789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +|.. +++       ...+++.+.++|+|||++++...
T Consensus       114 ~s~~-~~~-------~~~~~~~~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138       114 TSRA-LAS-------LNVLLELTLNLLKVGGYFLAYKG  143 (181)
T ss_pred             Eehh-hhC-------HHHHHHHHHHhcCCCCEEEEEcC
Confidence            9865 443       34578888999999999998754

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.44  E-value=3.6e-12  Score=116.57  Aligned_cols=122  Identities=21%  Similarity=0.264  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHc-CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352           18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (357)
Q Consensus        18 nwvks~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~   96 (357)
                      .|++..+...- ...+.+|||+|||+|..+..+++.. .+++|+|+|+.+++.++++....... ++.+...|+......
T Consensus        31 ~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~  108 (224)
T TIGR01983        31 DYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEK  108 (224)
T ss_pred             HHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcC
Confidence            56665554320 1247899999999998777776654 47999999999999999987654321 477888886543321


Q ss_pred             hhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus        97 ~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                           ..++||+|++...+|+ ..   +...+++++.++|+|||.+++.+++..
T Consensus       109 -----~~~~~D~i~~~~~l~~-~~---~~~~~l~~~~~~L~~gG~l~i~~~~~~  153 (224)
T TIGR01983       109 -----GAKSFDVVTCMEVLEH-VP---DPQAFIRACAQLLKPGGILFFSTINRT  153 (224)
T ss_pred             -----CCCCccEEEehhHHHh-CC---CHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence                 1378999999998887 33   456789999999999999998877653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.43  E-value=8.2e-13  Score=117.81  Aligned_cols=105  Identities=19%  Similarity=0.282  Sum_probs=82.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ...++||+|||.|.++..++. ...+++++|+|+.+|+.|++|....   .+++|.++|+....       +.++||+|+
T Consensus        43 ry~~alEvGCs~G~lT~~LA~-rCd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~-------P~~~FDLIV  111 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAP-RCDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFW-------PEGRFDLIV  111 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGG-GEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----------SS-EEEEE
T ss_pred             ccceeEecCCCccHHHHHHHH-hhCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCC-------CCCCeeEEE
Confidence            457999999999987777644 4569999999999999999999764   27999999986632       468999999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +...++| +...++.+.++.++...|+|||.+++.+.
T Consensus       112 ~SEVlYY-L~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  112 LSEVLYY-LDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             EES-GGG-SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EehHhHc-CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            9999999 76778899999999999999999987643

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.43  E-value=4.2e-13  Score=110.11  Aligned_cols=113  Identities=22%  Similarity=0.214  Sum_probs=86.7

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      +.+|||+|||+|..+...++....+++|+|+++.+++.|+.+++......+++++++|.....  ..+  ..++||+|++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~--~~~~~D~Iv~   76 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPL--PDGKFDLIVT   76 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTC--TTT-EEEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhc--cCceeEEEEE
Confidence            468999999999888888777767999999999999999999988766567999999975532  111  4589999999


Q ss_pred             ccchhhccCCH----HHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          112 FQHLQMCFETE----ERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       112 ~~~lh~~fes~----~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +-.++......    .....+++.+.++|+|||.+++.+|+
T Consensus        77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  117 (117)
T PF13659_consen   77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA  117 (117)
T ss_dssp             --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            87655421111    23568999999999999999998774

...

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.43  E-value=5e-12  Score=113.71  Aligned_cols=159  Identities=15%  Similarity=0.167  Sum_probs=103.9

Q ss_pred             HHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC--chhhhhhhcC
Q 018352           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKA  103 (357)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~--~~~~~l~~~~  103 (357)
                      ..+++++.+|||+|||+|..+..+.......++|+|+|+++++.|+++        +++++++|+...  .+      .+
T Consensus         8 ~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~------~~   73 (194)
T TIGR02081         8 LNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAF------PD   73 (194)
T ss_pred             HHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhccccc------CC
Confidence            344567889999999999887777665555789999999999988642        357788887541  12      35


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCcc
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES  183 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~  183 (357)
                      ++||+|+|..++|+ +.   +...+++++.+.+   |..++++|+......+..     ...++.      .+       
T Consensus        74 ~sfD~Vi~~~~l~~-~~---d~~~~l~e~~r~~---~~~ii~~p~~~~~~~~~~-----~~~~~~------~~-------  128 (194)
T TIGR02081        74 KSFDYVILSQTLQA-TR---NPEEILDEMLRVG---RHAIVSFPNFGYWRVRWS-----ILTKGR------MP-------  128 (194)
T ss_pred             CCcCEEEEhhHhHc-Cc---CHHHHHHHHHHhC---CeEEEEcCChhHHHHHHH-----HHhCCc------cc-------
Confidence            78999999999998 43   3556788877664   456777787543322211     000100      00       


Q ss_pred             EEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCc
Q 018352          184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (357)
Q Consensus       184 y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f  240 (357)
                          +.   ..+     .|.+. ...    ...+.+.+.+.++++++||++++...+
T Consensus       129 ----~~---~~~-----~~~~~-~~~----~~~~~s~~~~~~ll~~~Gf~v~~~~~~  168 (194)
T TIGR02081       129 ----VT---GEL-----PYDWY-NTP----NIHFCTIADFEDLCGELNLRILDRAAF  168 (194)
T ss_pred             ----cC---CCC-----Ccccc-CCC----CcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence                00   000     02221 111    124668899999999999999998766

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.42  E-value=2.8e-12  Score=116.51  Aligned_cols=103  Identities=24%  Similarity=0.305  Sum_probs=85.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcC--CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~--~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++.+|||+|||+|..+..++....  .+++|+|+++.+++.++++..   ...++.+..+|+...++      ..++||+
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~------~~~~~D~  109 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF------EDNSFDA  109 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC------CCCcEEE
Confidence            678999999999998888877654  489999999999999998875   12367899999877554      3578999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |++.+++|+ +   .+...+++++.+.|+|||++++..
T Consensus       110 i~~~~~~~~-~---~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       110 VTIAFGLRN-V---TDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             EEEeeeeCC-c---ccHHHHHHHHHHHcCCCcEEEEEE
Confidence            999998887 3   346789999999999999998763

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.41  E-value=4.2e-12  Score=112.73  Aligned_cols=115  Identities=14%  Similarity=0.110  Sum_probs=86.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|..+..+...+. +++|+|+|+.|++.|+++.+..+.  +++++.+|+....        .++||+|+
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--------~~~fD~Vi   87 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--------RGKFDVIL   87 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--------CCcccEEE
Confidence            457899999999988887776655 899999999999999998876543  6788999976522        35899999


Q ss_pred             EccchhhccC-----------------CHHHHHHHHHHHHhcccCCcEEEEEeCCc---hHHHHHH
Q 018352          111 CFQHLQMCFE-----------------TEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKY  156 (357)
Q Consensus       111 ~~~~lh~~fe-----------------s~~~~~~~L~~i~~~LkpGG~fi~t~pd~---~~i~~~~  156 (357)
                      ++..+|..-.                 .....+.+++++.++|+|||.+++..+..   ..+...+
T Consensus        88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l  153 (179)
T TIGR00537        88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKL  153 (179)
T ss_pred             ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHH
Confidence            9876654210                 11225678999999999999998875443   3444444

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.41  E-value=2.9e-12  Score=122.47  Aligned_cols=109  Identities=19%  Similarity=0.152  Sum_probs=84.6

Q ss_pred             HHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      +..+..++.+|||+|||+|..+..+++.+..+++|+|+|+.+++.|+++...++....+.+...|...  .      ..+
T Consensus       153 l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~------~~~  224 (288)
T TIGR00406       153 LEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--P------IEG  224 (288)
T ss_pred             HHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--c------cCC
Confidence            44556678999999999998877776667779999999999999999998876554456666665321  1      246


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +||+|+++...+       ....++.++.++|||||+++++..-
T Consensus       225 ~fDlVvan~~~~-------~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       225 KADVIVANILAE-------VIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             CceEEEEecCHH-------HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            899999876332       3567899999999999999988554

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.40  E-value=7e-12  Score=123.68  Aligned_cols=108  Identities=18%  Similarity=0.166  Sum_probs=85.6

Q ss_pred             CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCC--ceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~--~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..+|||||||+|.....++.. +..+|+++|+|+.|++.|+++++.+...  .+++|+..|+... +      ...+||+
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~------~~~~fDl  301 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V------EPFRFNA  301 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-C------CCCCEEE
Confidence            469999999999877777665 4569999999999999999988765321  3678999987542 2      2358999


Q ss_pred             EEEccchhhcc-CCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          109 VCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       109 V~~~~~lh~~f-es~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|+..+|... .+...+.++++.+.++|+|||.|++..
T Consensus       302 IlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        302 VLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             EEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            99998887632 234557889999999999999999885

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.40  E-value=4e-12  Score=116.79  Aligned_cols=108  Identities=17%  Similarity=0.096  Sum_probs=83.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-----------CCCceeEEEEcCCCCCchhhh
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFETQ   98 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-----------~~~~~v~f~~~D~~~~~~~~~   98 (357)
                      +++.+|||+|||.|.++..++..+. +|+|+|+|+.+|+.|.+.....           ....++++.++|+......  
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~--  112 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA--  112 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc--
Confidence            4678999999999999998877666 8999999999999874321100           0123688999999875431  


Q ss_pred             hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        99 l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                         ....||.|....++|+ + +.+...++++.+.++|+|||++++.
T Consensus       113 ---~~~~fd~v~D~~~~~~-l-~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        113 ---DLADVDAVYDRAALIA-L-PEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             ---cCCCeeEEEehHhHhh-C-CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence               1257999998888886 5 6788899999999999999975543

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.39  E-value=1.9e-12  Score=116.61  Aligned_cols=117  Identities=14%  Similarity=0.082  Sum_probs=88.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ....+|||||||+|..+..++.. +..+|+|+|+++.+++.|+++.+..+.. ++.++++|+....  .... +++++|.
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~--~~~~-~~~~~d~   90 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELL--DKFF-PDGSLSK   90 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHH--HhhC-CCCceeE
Confidence            35679999999999988888776 4568999999999999999888765443 7999999986421  1111 3468999


Q ss_pred             EEEccchhhccCCHH-----HHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352          109 VCCFQHLQMCFETEE-----RARRLLQNVSSLLKPGGYFLGITPDSST  151 (357)
Q Consensus       109 V~~~~~lh~~fes~~-----~~~~~L~~i~~~LkpGG~fi~t~pd~~~  151 (357)
                      |++.+..+| .....     ....++++++++|||||.|++.+.+...
T Consensus        91 v~~~~pdpw-~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~  137 (194)
T TIGR00091        91 VFLNFPDPW-PKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPL  137 (194)
T ss_pred             EEEECCCcC-CCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence            999887665 22110     0146899999999999999998877643

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.36  E-value=1.2e-11  Score=120.85  Aligned_cols=107  Identities=19%  Similarity=0.215  Sum_probs=86.3

Q ss_pred             CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ..+|||+|||+|..+..+.+. +..+++++|+|+.||+.|+++.+.++.  ..+++..|+...        ..+.||+|+
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~--------~~~~fDlIv  266 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD--------IKGRFDMII  266 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc--------cCCCccEEE
Confidence            468999999999877777665 445899999999999999998887643  456788887542        246899999


Q ss_pred             EccchhhccCC-HHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          111 CFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       111 ~~~~lh~~fes-~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+..+|+.... ....+++++++.+.|||||.+++....
T Consensus       267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            99999974433 456789999999999999999887543

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.36  E-value=1.5e-11  Score=118.45  Aligned_cols=105  Identities=13%  Similarity=0.073  Sum_probs=87.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .+..+|||||||+|..+..+++. +..+++++|+ +.+++.|+++.+..+...+++++.+|+...++        ..+|+
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~--------~~~D~  218 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY--------PEADA  218 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--------CCCCE
Confidence            35689999999999888888776 4568999998 78999999988776655579999999876544        23799


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |++...+|. + +.+...++++++++.|+|||++++.
T Consensus       219 v~~~~~lh~-~-~~~~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       219 VLFCRILYS-A-NEQLSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             EEeEhhhhc-C-ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence            998888887 4 4566788999999999999999887

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK14967 putative methyltransferase; Provisional

Probab=99.36  E-value=2.2e-11  Score=111.98  Aligned_cols=112  Identities=19%  Similarity=0.131  Sum_probs=84.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++.+..+.  ++.++.+|+... +      ..++||+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~------~~~~fD~  104 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-V------EFRPFDV  104 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-c------cCCCeeE
Confidence            456789999999999888777766656999999999999999988876533  578888887542 2      3478999


Q ss_pred             EEEccchhhccC-----------------CHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCFQHLQMCFE-----------------TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~~lh~~fe-----------------s~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |+|+...+...+                 .......+++.+.++|||||++++...+.
T Consensus       105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~  162 (223)
T PRK14967        105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL  162 (223)
T ss_pred             EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            999753322110                 12235678999999999999999875443

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.35  E-value=3.2e-11  Score=107.83  Aligned_cols=102  Identities=11%  Similarity=0.058  Sum_probs=80.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+..+.. +++++.+|+.. .+       .++||+
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~-------~~~~D~  100 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-EL-------PGKADA  100 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hc-------CcCCCE
Confidence            46789999999999888777665 3469999999999999999887665432 58888888632 22       357999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |++....++       ...+++.+.++|+|||++++...
T Consensus       101 v~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287        101 IFIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             EEECCCccC-------HHHHHHHHHHhcCCCeEEEEEEe
Confidence            998765443       35678999999999999988643

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.35  E-value=2.1e-11  Score=110.86  Aligned_cols=101  Identities=14%  Similarity=0.074  Sum_probs=78.7

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|||+|..+..++..  ..++|+|+|+++++++.|+++.+..+...+++++.+|+.....      ...+||
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~------~~~~fD  144 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE------KHAPFD  144 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc------cCCCcc
Confidence            46789999999999877666554  2468999999999999999988766543468899999865322      246899


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +|++..++++ +         ..++.+.|+|||++++..
T Consensus       145 ~Ii~~~~~~~-~---------~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        145 AIIVTAAAST-I---------PSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             EEEEccCcch-h---------hHHHHHhcCcCcEEEEEE
Confidence            9999886654 2         246778999999998764

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.34  E-value=7.1e-12  Score=127.63  Aligned_cols=105  Identities=19%  Similarity=0.211  Sum_probs=83.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||||||+|..+..++.. ..+++|+|+|+.|++.++++...   ..++.++++|+....+.    .++++||+|+
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~----~~~~~fD~I~  108 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLN----ISDGSVDLIF  108 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccC----CCCCCEEEEe
Confidence            5679999999999888887665 46999999999999987654321   23688999998643221    1457899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |.+++|| + +.+....+++++.++|||||++++.
T Consensus       109 ~~~~l~~-l-~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        109 SNWLLMY-L-SDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             hhhhHHh-C-CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9999999 5 3455789999999999999999886

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.33  E-value=1.6e-11  Score=114.92  Aligned_cols=102  Identities=20%  Similarity=0.206  Sum_probs=75.8

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      .+..++.+|||+|||+|..+..+.+.+..+++|+|+|+.+++.|+++.+.++....+.+..+              +.+|
T Consensus       115 ~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------------~~~f  180 (250)
T PRK00517        115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------------DLKA  180 (250)
T ss_pred             hhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------------CCCc
Confidence            34567899999999999777766665666799999999999999999876643212222111              1279


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |+|+|+...       +....++.++.++|||||+++++....
T Consensus       181 D~Vvani~~-------~~~~~l~~~~~~~LkpgG~lilsgi~~  216 (250)
T PRK00517        181 DVIVANILA-------NPLLELAPDLARLLKPGGRLILSGILE  216 (250)
T ss_pred             CEEEEcCcH-------HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence            999987532       235678999999999999999885443

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.32  E-value=5.5e-11  Score=107.39  Aligned_cols=120  Identities=12%  Similarity=0.056  Sum_probs=88.5

Q ss_pred             HHHHHHHc-CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (357)
Q Consensus        21 ks~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~   97 (357)
                      +...+.+. ..++.+|||+|||+|..+..++..  +..+|+++|+++.+++.|+++.+..+...++.++.+|.... +  
T Consensus        29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~-l--  105 (198)
T PRK00377         29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI-L--  105 (198)
T ss_pred             HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-H--
Confidence            33334443 347889999999999888777654  34689999999999999999887765334688888887542 1  


Q ss_pred             hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus        98 ~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                        ......||+|++....       .....+++.+.++|+|||++++..++.+.+
T Consensus       106 --~~~~~~~D~V~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~  151 (198)
T PRK00377        106 --FTINEKFDRIFIGGGS-------EKLKEIISASWEIIKKGGRIVIDAILLETV  151 (198)
T ss_pred             --hhcCCCCCEEEECCCc-------ccHHHHHHHHHHHcCCCcEEEEEeecHHHH
Confidence              1123689999885421       235678999999999999999877766443

>PRK04266 fibrillarin; Provisional

Probab=99.31  E-value=2.5e-11  Score=112.10  Aligned_cols=107  Identities=17%  Similarity=0.100  Sum_probs=79.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|..+..++.. +.++|+|+|+|+.|++.+.++.+..   .++.++.+|+........   ...+||+
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~---l~~~~D~  144 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAH---VVEKVDV  144 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhh---ccccCCE
Confidence            47899999999999888777665 3458999999999999887776543   268899999865211111   1356999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |++..      ........+++++.++|||||+++++++-
T Consensus       145 i~~d~------~~p~~~~~~L~~~~r~LKpGG~lvI~v~~  178 (226)
T PRK04266        145 IYQDV------AQPNQAEIAIDNAEFFLKDGGYLLLAIKA  178 (226)
T ss_pred             EEECC------CChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            98543      22334566799999999999999998553

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.31  E-value=2.4e-12  Score=112.60  Aligned_cols=79  Identities=19%  Similarity=0.198  Sum_probs=65.3

Q ss_pred             EEEeCChHHHHHHHHHhHhcC--CCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhc
Q 018352           58 IGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL  135 (357)
Q Consensus        58 ~GiDiS~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~  135 (357)
                      +|+|+|++||+.|+++.+...  ...+++|+++|+.+.++      .+++||+|++.+++|+ +.   +..+++++++++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~------~~~~fD~v~~~~~l~~-~~---d~~~~l~ei~rv   70 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF------DDCEFDAVTMGYGLRN-VV---DRLRAMKEMYRV   70 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC------CCCCeeEEEecchhhc-CC---CHHHHHHHHHHH
Confidence            589999999999988765321  12368999999988776      5689999999999998 43   567899999999


Q ss_pred             ccCCcEEEEEe
Q 018352          136 LKPGGYFLGIT  146 (357)
Q Consensus       136 LkpGG~fi~t~  146 (357)
                      |||||+|++..
T Consensus        71 LkpGG~l~i~d   81 (160)
T PLN02232         71 LKPGSRVSILD   81 (160)
T ss_pred             cCcCeEEEEEE
Confidence            99999998773

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.28  E-value=7e-11  Score=107.84  Aligned_cols=111  Identities=19%  Similarity=0.100  Sum_probs=79.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh--hcCC
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~--~~~~  104 (357)
                      +.++.+|||||||+|..+..+++.  ..++|+|+|+++ |.        .   ..++.++++|+........+.  ...+
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~---~~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------P---IVGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------C---CCCcEEEecCCCChHHHHHHHHHhCCC
Confidence            467889999999999888777665  236899999998 21        1   125889999998754211110  1357


Q ss_pred             cccEEEEccchhhccCCH--H------HHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          105 QADLVCCFQHLQMCFETE--E------RARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~--~------~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      +||+|+|..+.|+ ..+.  +      ....+|+++.++|||||.|++.+...+.+
T Consensus       117 ~~D~V~S~~~~~~-~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~  171 (209)
T PRK11188        117 KVQVVMSDMAPNM-SGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGF  171 (209)
T ss_pred             CCCEEecCCCCcc-CCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCH
Confidence            8999999887766 3221  1      12568999999999999999987665443

>PRK14968 putative methyltransferase; Provisional

Probab=99.28  E-value=9e-11  Score=104.01  Aligned_cols=112  Identities=18%  Similarity=0.197  Sum_probs=84.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCce-eEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~-v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|..+..++.. ..+++|+|+|+++++.++++.+......+ +.++++|.... +      ...+||+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~~d~   93 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-F------RGDKFDV   93 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-c------cccCceE
Confidence            46779999999999988888776 56999999999999999988876543212 78889987652 2      2348999


Q ss_pred             EEEccchhh-------------c----cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCFQHLQM-------------C----FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~~lh~-------------~----fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |+++..+..             .    ..+......+++++.++|||||.+++..++.
T Consensus        94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~  151 (188)
T PRK14968         94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL  151 (188)
T ss_pred             EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence            998653211             1    1113446778999999999999998887654

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.28  E-value=1.2e-10  Score=111.18  Aligned_cols=113  Identities=19%  Similarity=0.198  Sum_probs=85.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      +..+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+.++...++.|+++|+... +      +.++||+|
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~------~~~~fD~I  193 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-L------PGRKYDLI  193 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-c------CCCCccEE
Confidence            4579999999999888877765 45699999999999999999988765544789999998542 2      23579999


Q ss_pred             EEccch------h-----hccCC----------HHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          110 CCFQHL------Q-----MCFET----------EERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       110 ~~~~~l------h-----~~fes----------~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      +|+--.      .     ...+.          .+..+.+++++.++|+|||++++.+....
T Consensus       194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~  255 (284)
T TIGR03533       194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM  255 (284)
T ss_pred             EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence            986211      0     00011          13357889999999999999999877643

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.28  E-value=7.1e-12  Score=112.56  Aligned_cols=102  Identities=28%  Similarity=0.293  Sum_probs=85.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      +..+|.|||||+|..+..+.+. +...++|+|-|++||+.|+++..      +++|..+|+.+..       +...+|++
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w~-------p~~~~dll   96 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTWK-------PEQPTDLL   96 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC------CCceecccHhhcC-------CCCccchh
Confidence            5679999999999777666665 77899999999999999988864      6789999987643       35789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .++.++||.-+    --.+|..+...|.|||.+...+||.
T Consensus        97 faNAvlqWlpd----H~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          97 FANAVLQWLPD----HPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             hhhhhhhhccc----cHHHHHHHHHhhCCCceEEEECCCc
Confidence            99999999433    3456888889999999999999986

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.28  E-value=7.4e-11  Score=107.89  Aligned_cols=101  Identities=13%  Similarity=0.029  Sum_probs=78.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..++.+|||+|||+|..+..++..  ..++|+|+|+++++++.|+++++..+. .+++++++|+.....      ..++|
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~------~~~~f  146 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYE------ENAPY  146 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCC------cCCCc
Confidence            357899999999999877666654  236999999999999999999876543 268999999865432      34789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|++..+.+.          +...+.+.|||||++++..
T Consensus       147 D~I~~~~~~~~----------~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        147 DRIYVTAAGPD----------IPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CEEEECCCccc----------chHHHHHhhCCCcEEEEEE
Confidence            99998875443          1235667899999998864

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.27  E-value=8.6e-12  Score=113.78  Aligned_cols=114  Identities=13%  Similarity=0.112  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (357)
Q Consensus        18 nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~   97 (357)
                      .|++...  .+......++|+|||+|..+.- ....+.+|+|+|+|+.||+.|++..+.........+...+.  .++  
T Consensus        22 dw~~~ia--~~~~~h~~a~DvG~G~Gqa~~~-iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~--v~L--   94 (261)
T KOG3010|consen   22 DWFKKIA--SRTEGHRLAWDVGTGNGQAARG-IAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEM--VDL--   94 (261)
T ss_pred             HHHHHHH--hhCCCcceEEEeccCCCcchHH-HHHhhhhheeecCCHHHHHHhhcCCCcccccCCcccccccc--ccc--
Confidence            5666533  3333344899999999944444 44557899999999999999987655433222222222222  222  


Q ss_pred             hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCc-EEEEE
Q 018352           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGI  145 (357)
Q Consensus        98 ~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG-~fi~t  145 (357)
                        ...+++.|+|+|..++|| |    +..++.++++++||+.| .+.+-
T Consensus        95 --~g~e~SVDlI~~Aqa~HW-F----dle~fy~~~~rvLRk~Gg~iavW  136 (261)
T KOG3010|consen   95 --LGGEESVDLITAAQAVHW-F----DLERFYKEAYRVLRKDGGLIAVW  136 (261)
T ss_pred             --cCCCcceeeehhhhhHHh-h----chHHHHHHHHHHcCCCCCEEEEE
Confidence              113689999999999999 7    57789999999999877 54444

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.27  E-value=5.5e-11  Score=106.44  Aligned_cols=117  Identities=16%  Similarity=0.122  Sum_probs=79.3

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh--hcCC
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~--~~~~  104 (357)
                      +.++.+|||+|||+|+.+..+...  +..+++|+|+|+.+        ..    .++.++++|+.+......+.  ...+
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~----~~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI----ENVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC----CCceEEEeeCCChhHHHHHHHHhCCC
Confidence            357899999999999887777665  34589999999864        11    25788899987643211111  1346


Q ss_pred             cccEEEEccchhh----ccC---CHHHHHHHHHHHHhcccCCcEEEEEeCCc---hHHHHHHH
Q 018352          105 QADLVCCFQHLQM----CFE---TEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQ  157 (357)
Q Consensus       105 ~FDlV~~~~~lh~----~fe---s~~~~~~~L~~i~~~LkpGG~fi~t~pd~---~~i~~~~~  157 (357)
                      +||+|+|..+.|+    .+.   +.+..+.+++++.++|+|||++++.....   ..++..++
T Consensus        98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~  160 (188)
T TIGR00438        98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELR  160 (188)
T ss_pred             CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHH
Confidence            8999998654321    111   12345789999999999999999865444   34444443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.26  E-value=7.1e-11  Score=108.73  Aligned_cols=113  Identities=11%  Similarity=0.013  Sum_probs=89.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHh-----------cCCCceeEEEEcCCCCCchhhh
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN-----------QRKNFIAEFFEADPCAENFETQ   98 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~-----------~~~~~~v~f~~~D~~~~~~~~~   98 (357)
                      .++.+||+.|||+|.++..++..+. +|+|+|+|+.+|+.+.+....           .....++++.++|++..+... 
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~-  119 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA-  119 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-
Confidence            4568999999999999999888777 799999999999998663210           001236899999998854210 


Q ss_pred             hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus        99 l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                        ...++||+|.-..+++. + ..+...++.+.+.++|+|||.+++.+.+
T Consensus       120 --~~~~~fD~VyDra~~~A-l-pp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        120 --NNLPVFDIWYDRGAYIA-L-PNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             --cccCCcCeeeeehhHhc-C-CHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence              02368999998888886 5 6788899999999999999999888643

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.26  E-value=1e-10  Score=107.01  Aligned_cols=102  Identities=12%  Similarity=0.016  Sum_probs=78.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..++.+|||+|||+|..+..++...  ..+|+|+|+++++++.|+++++..+. .+++++++|+.....      ...+|
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~------~~~~f  147 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWE------PLAPY  147 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCc------ccCCC
Confidence            3578899999999998887776652  34699999999999999999887654 368999999865322      23689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |+|++..+.+.          +...+.+.|+|||++++...
T Consensus       148 D~Ii~~~~~~~----------~~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       148 DRIYVTAAGPK----------IPEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             CEEEEcCCccc----------ccHHHHHhcCcCcEEEEEEc
Confidence            99998775444          23457789999999998643

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.25  E-value=1.3e-10  Score=113.17  Aligned_cols=120  Identities=18%  Similarity=0.109  Sum_probs=91.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|+.+...... ..+++|+|+++.|++.|+.+.+..+.. ++.+.++|+...++      ..++||+
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~~------~~~~~D~  251 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLPL------SSESVDA  251 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCCc------ccCCCCE
Confidence            457889999999999888776554 458999999999999999988765443 37889999987655      3578999


Q ss_pred             EEEccchhh--cc---CCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352          109 VCCFQHLQM--CF---ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus       109 V~~~~~lh~--~f---es~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                      |++...+.-  ..   ...+....+++++.++|||||++++.+|+...+.+.+
T Consensus       252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~  304 (329)
T TIGR01177       252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLA  304 (329)
T ss_pred             EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHH
Confidence            999642211  00   0123467899999999999999999988875554433

This family is found exclusively in the Archaea.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.25  E-value=1.5e-10  Score=107.45  Aligned_cols=111  Identities=21%  Similarity=0.215  Sum_probs=83.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..+.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+.. ++.++++|+.. .+      ..++||+
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~------~~~~fD~  157 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-PL------PGGKFDL  157 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-cC------cCCceeE
Confidence            34569999999999888888765 4569999999999999999988765443 68999999865 23      3578999


Q ss_pred             EEEccchhh------cc------CC----------HHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQM------CF------ET----------EERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~------~f------es----------~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|+..++.      ..      +.          ......+++++.++|+|||.+++....
T Consensus       158 Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~  219 (251)
T TIGR03534       158 IVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY  219 (251)
T ss_pred             EEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence            999653321      00      00          122357899999999999999987643

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.24  E-value=4e-11  Score=114.63  Aligned_cols=106  Identities=25%  Similarity=0.314  Sum_probs=81.1

Q ss_pred             HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      .++.++..++.+|||+|||+|-.+...++.+.++|+|+|+++.+++.|++..+.++...++.+.  .  ....      .
T Consensus       153 ~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~--~~~~------~  222 (295)
T PF06325_consen  153 ELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L--SEDL------V  222 (295)
T ss_dssp             HHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C--TSCT------C
T ss_pred             HHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E--eccc------c
Confidence            3456677888999999999998888777788889999999999999999999887665444332  1  1122      2


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .++||+|+++-..       +-...++..+.++|+|||++|++
T Consensus       223 ~~~~dlvvANI~~-------~vL~~l~~~~~~~l~~~G~lIlS  258 (295)
T PF06325_consen  223 EGKFDLVVANILA-------DVLLELAPDIASLLKPGGYLILS  258 (295)
T ss_dssp             CS-EEEEEEES-H-------HHHHHHHHHCHHHEEEEEEEEEE
T ss_pred             cccCCEEEECCCH-------HHHHHHHHHHHHhhCCCCEEEEc
Confidence            4889999987633       34667888999999999999987

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=5.5e-11  Score=113.07  Aligned_cols=109  Identities=17%  Similarity=0.182  Sum_probs=82.0

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      .+.++..++.+|||+|||+|-.+...++.+..+++|+|+++.+++.|+++.+.++....+.....+.....       ..
T Consensus       155 ~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-------~~  227 (300)
T COG2264         155 ALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-------EN  227 (300)
T ss_pred             HHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-------cc
Confidence            35566678999999999999888888888999999999999999999999887744321111111111111       23


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ++||+|+++---       +-...+...+.+.|||||++|.+-
T Consensus       228 ~~~DvIVANILA-------~vl~~La~~~~~~lkpgg~lIlSG  263 (300)
T COG2264         228 GPFDVIVANILA-------EVLVELAPDIKRLLKPGGRLILSG  263 (300)
T ss_pred             CcccEEEehhhH-------HHHHHHHHHHHHHcCCCceEEEEe
Confidence            699999998622       235688999999999999999884

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.24  E-value=9.4e-11  Score=115.53  Aligned_cols=116  Identities=15%  Similarity=0.107  Sum_probs=89.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .+..+||||||+|..+..++.. +...++|+|+++.+++.|.++....+.. ++.++++|+....  ..+  +++++|.|
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll--~~~--~~~s~D~I  196 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLL--ELL--PSNSVEKI  196 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhh--hhC--CCCceeEE
Confidence            3568999999999999888876 4569999999999999999998766543 6999999985421  111  46899999


Q ss_pred             EEccchhhccCCHH---HHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          110 CCFQHLQMCFETEE---RARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       110 ~~~~~lh~~fes~~---~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      ++.+...| .....   ....+++.++++|+|||.+.+.|-+.+..
T Consensus       197 ~lnFPdPW-~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~  241 (390)
T PRK14121        197 FVHFPVPW-DKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYF  241 (390)
T ss_pred             EEeCCCCc-cccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence            99886665 21111   12578999999999999999988776544

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.24  E-value=1e-10  Score=91.07  Aligned_cols=103  Identities=24%  Similarity=0.274  Sum_probs=81.6

Q ss_pred             EEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEcc
Q 018352           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (357)
Q Consensus        34 ~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~  113 (357)
                      +|||+|||.|..+..+......+++++|+++.+++.+++..... ...++.++..|+.....     ...++||+|++..
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~d~i~~~~   74 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPP-----EADESFDVIISDP   74 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcc-----ccCCceEEEEEcc
Confidence            58999999999888887756679999999999999988543322 23368888988866432     0247899999999


Q ss_pred             chhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       114 ~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+++ +  .+....+++++.+.|++||+++++
T Consensus        75 ~~~~-~--~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          75 PLHH-L--VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ceee-h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            7776 2  567889999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.21  E-value=8.8e-11  Score=108.94  Aligned_cols=134  Identities=17%  Similarity=0.133  Sum_probs=98.5

Q ss_pred             HHHHHHHHcCC--CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352           20 AKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (357)
Q Consensus        20 vks~Li~~~~~--~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~   96 (357)
                      +.++|+..+.+  ...+|||||||+|.....+++. ...+++|||+++++.+.|++..+.+....+++++++|+..... 
T Consensus        31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~-  109 (248)
T COG4123          31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK-  109 (248)
T ss_pred             cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh-
Confidence            45677777765  4679999999999766666665 4479999999999999999999888778899999999866332 


Q ss_pred             hhhhhcCCcccEEEEccchhhcc----CC----------HHHHHHHHHHHHhcccCCcEEEEEeCCc--hHHHHHHH
Q 018352           97 TQMQEKANQADLVCCFQHLQMCF----ET----------EERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ  157 (357)
Q Consensus        97 ~~l~~~~~~FDlV~~~~~lh~~f----es----------~~~~~~~L~~i~~~LkpGG~fi~t~pd~--~~i~~~~~  157 (357)
                       ..  ...+||+|+|+--++-.-    ++          .-....+++.++++||+||++.+..+-.  ..|...++
T Consensus       110 -~~--~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~  183 (248)
T COG4123         110 -AL--VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLK  183 (248)
T ss_pred             -cc--cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHH
Confidence             11  235799999975432210    01          1124679999999999999999887654  33444443

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.21  E-value=7.7e-11  Score=107.57  Aligned_cols=160  Identities=18%  Similarity=0.222  Sum_probs=109.7

Q ss_pred             EEEEECCCCChhHHHHHHhc---CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           34 TVCDLYCGAGVDVDKWETAL---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        34 ~VLDlGCG~G~~l~k~~~~~---~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      +||++|||.|..+..+++..   .-.++++|.|+.+|+..+++.....  .++.-.+.|++...+...+  ..+++|+|+
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~--~~~svD~it  149 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPP--EEGSVDIIT  149 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCC--CcCccceEE
Confidence            79999999998777777652   2479999999999998887654331  2455667777765543222  358999999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEeec
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV  190 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~  190 (357)
                      +.|++-- . +.++..+++.|++++|||||.+++.-.....+..                               ++|..
T Consensus       150 ~IFvLSA-i-~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaq-------------------------------lRF~~  196 (264)
T KOG2361|consen  150 LIFVLSA-I-HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQ-------------------------------LRFKK  196 (264)
T ss_pred             EEEEEec-c-ChHHHHHHHHHHHHHhCCCcEEEEeecccchHHH-------------------------------HhccC
Confidence            9998765 3 6788999999999999999999988544433211                               11110


Q ss_pred             ccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEec
Q 018352          191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQ  238 (357)
Q Consensus       191 ~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~  238 (357)
                      +    ..++  .+|+.-++.+.  -|.-+-+.|..++.++||+.++..
T Consensus       197 ~----~~i~--~nfYVRgDGT~--~YfF~~eeL~~~f~~agf~~~~~~  236 (264)
T KOG2361|consen  197 G----QCIS--ENFYVRGDGTR--AYFFTEEELDELFTKAGFEEVQLE  236 (264)
T ss_pred             C----ceee--cceEEccCCce--eeeccHHHHHHHHHhcccchhccc
Confidence            0    0000  11222233322  266677889999999999988753

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.21  E-value=3.6e-10  Score=107.11  Aligned_cols=103  Identities=20%  Similarity=0.154  Sum_probs=76.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHH--HhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD--TWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~--r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .+.+|||||||+|..+..++.++.+.|+|+|.+....-+.+.  ++-..    ...+....+.-+.+    +. .+.||+
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~----~~~~~~lplgvE~L----p~-~~~FDt  185 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ----DPPVFELPLGVEDL----PN-LGAFDT  185 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC----CccEEEcCcchhhc----cc-cCCcCE
Confidence            688999999999999999999999999999999988877443  33222    11222222211122    11 478999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|..++.|    ..+.-.+|+.+++.|++||.+++-|
T Consensus       186 VF~MGVLYH----rr~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  186 VFSMGVLYH----RRSPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             EEEeeehhc----cCCHHHHHHHHHHhhCCCCEEEEEE
Confidence            999997766    3456778999999999999999774

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.20  E-value=2.4e-10  Score=102.96  Aligned_cols=110  Identities=20%  Similarity=0.216  Sum_probs=81.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+..+. .+++++.+|+... + ..   ....+|.
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~-~-~~---~~~~~d~  112 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPEC-L-AQ---LAPAPDR  112 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHH-H-hh---CCCCCCE
Confidence            36789999999999887777654 457999999999999999998876543 2688999987441 1 00   1234677


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHH
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~  153 (357)
                      |++..        ......+++++.++|+|||+|++.+++.+.+.
T Consensus       113 v~~~~--------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~  149 (196)
T PRK07402        113 VCIEG--------GRPIKEILQAVWQYLKPGGRLVATASSLEGLY  149 (196)
T ss_pred             EEEEC--------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHH
Confidence            65422        12356789999999999999999988865543

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.20  E-value=4.1e-10  Score=108.66  Aligned_cols=110  Identities=19%  Similarity=0.184  Sum_probs=83.6

Q ss_pred             CEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      .+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+..+...+++|+++|+.. .+      +.++||+|+|
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l------~~~~fDlIvs  207 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-AL------PGRRYDLIVS  207 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hC------CCCCccEEEE
Confidence            68999999999888777665 4569999999999999999998876554468999999754 22      2357999998


Q ss_pred             ccch------hh-----ccCC----------HHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          112 FQHL------QM-----CFET----------EERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       112 ~~~l------h~-----~fes----------~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +-..      ..     .++.          .+..+.+++++.+.|+|||++++.+...
T Consensus       208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~  266 (307)
T PRK11805        208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS  266 (307)
T ss_pred             CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence            6311      10     0011          2345789999999999999999986654

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.19  E-value=5.1e-10  Score=106.80  Aligned_cols=110  Identities=15%  Similarity=0.283  Sum_probs=83.7

Q ss_pred             CEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      .+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+..+...++.|+++|+... +      ...+||+|++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~------~~~~fDlIvs  188 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-L------AGQKIDIIVS  188 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-C------cCCCccEEEE
Confidence            69999999999888777765 34699999999999999999887665444589999998652 2      2347999998


Q ss_pred             ccc-------------hhh----cc----CCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          112 FQH-------------LQM----CF----ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       112 ~~~-------------lh~----~f----es~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +-.             .+|    ++    ...+..+.+++++.+.|+|||++++.+.+.
T Consensus       189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~  247 (284)
T TIGR00536       189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW  247 (284)
T ss_pred             CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence            621             111    00    012357789999999999999999887654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.18  E-value=3.4e-10  Score=103.19  Aligned_cols=100  Identities=12%  Similarity=0.056  Sum_probs=77.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++... .+++++|+++++++.|+++++..+.. ++++..+|......      ..++||+|
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~fD~I  148 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWP------AYAPFDRI  148 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCC------cCCCcCEE
Confidence            467899999999998776555443 58999999999999999998765432 58899999754211      23789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      ++..++++          +.+.+.+.|+|||.+++...
T Consensus       149 ~~~~~~~~----------~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        149 LVTAAAPE----------IPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EEccCchh----------hhHHHHHhcCCCcEEEEEEc
Confidence            99875554          13456789999999998865

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.13  E-value=8.4e-10  Score=99.70  Aligned_cols=130  Identities=19%  Similarity=0.256  Sum_probs=77.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHcC-CCCCEEEEECCCCChhHHHHH----H---h--c-CCeEEEEeCChHHHHHHHHH---
Q 018352            8 RSELTHHRLYEFAKTALIKIYS-HPYVTVCDLYCGAGVDVDKWE----T---A--L-IANYIGIDVATSGIGEARDT---   73 (357)
Q Consensus         8 r~~~p~~~~~nwvks~Li~~~~-~~~~~VLDlGCG~G~~l~k~~----~---~--~-~~~v~GiDiS~~~l~~A~~r---   73 (357)
                      |.......+.+.+...++.+.. ....+|+..||++|.....++    .   .  + ..+++|+|||+.+|+.|++-   
T Consensus         7 Rd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~   86 (196)
T PF01739_consen    7 RDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYP   86 (196)
T ss_dssp             TTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEE
T ss_pred             CCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCC
Confidence            3333444455555544443322 256799999999997554332    2   1  1 23899999999999999871   


Q ss_pred             --------------h--HhcC--------CCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHH
Q 018352           74 --------------W--ENQR--------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLL  129 (357)
Q Consensus        74 --------------~--~~~~--------~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L  129 (357)
                                    |  +..+        ....+.|.+.|+.+...      ..+.||+|+|.+++-| | +.+..++++
T Consensus        87 ~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~------~~~~fD~I~CRNVlIY-F-~~~~~~~vl  158 (196)
T PF01739_consen   87 ERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDP------PFGRFDLIFCRNVLIY-F-DPETQQRVL  158 (196)
T ss_dssp             GGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGG-S--HHHHHHHH
T ss_pred             HHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCc------ccCCccEEEecCEEEE-e-CHHHHHHHH
Confidence                          1  0000        12257899999887222      3588999999999999 8 677789999


Q ss_pred             HHHHhcccCCcEEEEE
Q 018352          130 QNVSSLLKPGGYFLGI  145 (357)
Q Consensus       130 ~~i~~~LkpGG~fi~t  145 (357)
                      +.+++.|+|||+|++.
T Consensus       159 ~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  159 RRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             HHHGGGEEEEEEEEE-
T ss_pred             HHHHHHcCCCCEEEEe
Confidence            9999999999999876

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.13  E-value=1.1e-09  Score=103.38  Aligned_cols=110  Identities=20%  Similarity=0.239  Sum_probs=82.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.. .....++.++.+|+... +      ..++||+
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~------~~~~fD~  178 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-L------PGGRFDL  178 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-C------CCCceeE
Confidence            35679999999999888887766 45799999999999999999887 22234789999998542 2      2468999


Q ss_pred             EEEccchhh------c------c----------CCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          109 VCCFQHLQM------C------F----------ETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       109 V~~~~~lh~------~------f----------es~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |+|+....-      .      +          ...+..+.+++++.++|+|||++++.+.
T Consensus       179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g  239 (275)
T PRK09328        179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG  239 (275)
T ss_pred             EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            998542110      0      0          0123457899999999999999998753

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1.2e-09  Score=103.57  Aligned_cols=108  Identities=19%  Similarity=0.196  Sum_probs=83.6

Q ss_pred             CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      +.+|||+|||.|-....+++. +..+++.+|+|..+|+.|++..+.++... ..+...|..+.-        .++||+|+
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~~v--------~~kfd~Ii  229 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYEPV--------EGKFDLII  229 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccccc--------cccccEEE
Confidence            459999999999766666665 46799999999999999999998775432 256777766532        24899999


Q ss_pred             EccchhhccCC-HHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          111 CFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       111 ~~~~lh~~fes-~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+--+|---.. ..-..++++...+.|++||.+.+..-.
T Consensus       230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~  268 (300)
T COG2813         230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR  268 (300)
T ss_pred             eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC
Confidence            99999863211 223558999999999999999888543

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.12  E-value=8.1e-10  Score=99.65  Aligned_cols=112  Identities=19%  Similarity=0.226  Sum_probs=81.8

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC-CchhhhhhhcCCcccEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQADLVC  110 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~-~~~~~~l~~~~~~FDlV~  110 (357)
                      ..-|||||||+|-...-+...+ ...+|+|||+.||++|.++--      .-.++.+|+-. .+|      .+++||.|+
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~------egdlil~DMG~Glpf------rpGtFDg~I  117 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVEREL------EGDLILCDMGEGLPF------RPGTFDGVI  117 (270)
T ss_pred             CcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhh------hcCeeeeecCCCCCC------CCCccceEE
Confidence            5679999999994444444445 689999999999999987421      23467777643 344      679999999


Q ss_pred             EccchhhccC-------CHHHHHHHHHHHHhcccCCcEEEEEe-CCchHHHHHH
Q 018352          111 CFQHLQMCFE-------TEERARRLLQNVSSLLKPGGYFLGIT-PDSSTIWAKY  156 (357)
Q Consensus       111 ~~~~lh~~fe-------s~~~~~~~L~~i~~~LkpGG~fi~t~-pd~~~i~~~~  156 (357)
                      +..+++|.+.       .......|+..++.+|++|++.++.. |..+.-++.+
T Consensus       118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i  171 (270)
T KOG1541|consen  118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMI  171 (270)
T ss_pred             EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHH
Confidence            9888887542       23456778999999999999999884 4444333433

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.12  E-value=1.8e-09  Score=101.29  Aligned_cols=110  Identities=21%  Similarity=0.276  Sum_probs=79.6

Q ss_pred             CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ..+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+.++    .+|+++|+... +...   ..++||+|+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~-l~~~---~~~~fDlVv  158 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDA-LPTA---LRGRVDILA  158 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhh-cchh---cCCCEeEEE
Confidence            458999999999888777654 44589999999999999999887652    47889997642 1110   125799999


Q ss_pred             Eccchh------hc------cC----------CHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          111 CFQHLQ------MC------FE----------TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       111 ~~~~lh------~~------fe----------s~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ++--..      .+      ++          ..+-.+.+++++.++|+|||.+++.+...
T Consensus       159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~  219 (251)
T TIGR03704       159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER  219 (251)
T ss_pred             ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence            875321      10      00          01235688999999999999999886543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.11  E-value=1.4e-09  Score=108.37  Aligned_cols=115  Identities=16%  Similarity=0.164  Sum_probs=84.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ++.+|||+|||+|+.+...+..+..+++++|+|+.+++.|++.++.++.. .+++++++|+...  ...+....++||+|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~--l~~~~~~~~~fDlV  297 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL--LRTYRDRGEKFDVI  297 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH--HHHHHhcCCCCCEE
Confidence            57899999999999877666666679999999999999999999877654 3689999998642  11121124689999


Q ss_pred             EEccchhhccCCH-------HHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCFQHLQMCFETE-------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~~~lh~~fes~-------~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ++.--. + -.+.       .....+++.+.++|+|||+++.++++.
T Consensus       298 ilDPP~-f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~  342 (396)
T PRK15128        298 VMDPPK-F-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG  342 (396)
T ss_pred             EECCCC-C-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            987431 0 0111       234566778899999999999876553

>PTZ00146 fibrillarin; Provisional

Probab=99.11  E-value=1.4e-09  Score=103.38  Aligned_cols=105  Identities=14%  Similarity=0.064  Sum_probs=77.2

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +.++.+|||+|||+|..+..++..  ....|+++|+|+.|++...+..+..   .++.++.+|+.....   +.....+|
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~---y~~~~~~v  203 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQK---YRMLVPMV  203 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhh---hhcccCCC
Confidence            458899999999999988888776  2468999999998665544443321   268889999865321   11123579


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|++..+      ..++.+.++.++.+.|||||+|++.
T Consensus       204 DvV~~Dva------~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        204 DVIFADVA------QPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CEEEEeCC------CcchHHHHHHHHHHhccCCCEEEEE
Confidence            99988763      2346777888999999999999985

>PRK04457 spermidine synthase; Provisional

Probab=99.11  E-value=1.2e-09  Score=103.15  Aligned_cols=115  Identities=13%  Similarity=0.071  Sum_probs=82.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++..+|||||||.|..+..++.. +..+++++|+++++++.|++.+.......+++++.+|+...     +....++||+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-----l~~~~~~yD~  139 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-----IAVHRHSTDV  139 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH-----HHhCCCCCCE
Confidence            45679999999999777766554 55789999999999999999876433334789999997541     1112468999


Q ss_pred             EEEccchhhc-cCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          109 VCCFQHLQMC-FETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       109 V~~~~~lh~~-fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      |++.. ++.. ....-....+++++.++|+|||++++...+.+
T Consensus       140 I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~  181 (262)
T PRK04457        140 ILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD  181 (262)
T ss_pred             EEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence            98753 2110 00001136899999999999999998754443

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.10  E-value=1.6e-09  Score=109.18  Aligned_cols=112  Identities=17%  Similarity=0.156  Sum_probs=83.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|+.+..++... ..+|+|+|+|+.+++.++++.+..+.  ++.++++|+......  .  ..++||.
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~--~--~~~~fD~  316 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQW--W--DGQPFDR  316 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhh--c--ccCCCCE
Confidence            368899999999999888877663 36999999999999999999877644  468899998753210  0  2467999


Q ss_pred             EEEccc------------hhhccCCHH-------HHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQH------------LQMCFETEE-------RARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~------------lh~~fes~~-------~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |++...            ++| ..+.+       ..++++.++.++|||||+++.+++.
T Consensus       317 Vl~D~Pcs~~G~~~~~p~~~~-~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs  374 (427)
T PRK10901        317 ILLDAPCSATGVIRRHPDIKW-LRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS  374 (427)
T ss_pred             EEECCCCCcccccccCccccc-cCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            985321            112 11222       2457899999999999999988653

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.08  E-value=2.3e-09  Score=108.50  Aligned_cols=110  Identities=25%  Similarity=0.216  Sum_probs=82.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++.+|||+|||+|+.+..++..  +.++++|+|+|+.+++.++++.+..+.. +++++++|+....       +.++||+
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-------~~~~fD~  321 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-------PEEQPDA  321 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-------cCCCCCE
Confidence            6789999999999877766553  3468999999999999999998876543 6899999986532       2468999


Q ss_pred             EEEc----cc--------hhhccCCHH-------HHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCF----QH--------LQMCFETEE-------RARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~----~~--------lh~~fes~~-------~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |++-    ..        .+|.+ +.+       ....+|.++.+.|||||+++..|+..
T Consensus       322 Vl~D~Pcsg~g~~~r~p~~~~~~-~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        322 ILLDAPCTGTGVLGRRAELRWKL-TPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             EEEcCCCCCcchhhcCcchhhcC-CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            9862    11        11211 222       23568999999999999999887654

>PRK00811 spermidine synthase; Provisional

Probab=99.08  E-value=7.2e-10  Score=105.75  Aligned_cols=113  Identities=13%  Similarity=0.093  Sum_probs=83.7

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcC----CCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~----~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      +...+||+||||.|+.+..+++. +..+|+++|+++.+++.|++.+....    ...+++++.+|+..  +   +....+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~--~---l~~~~~  149 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK--F---VAETEN  149 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH--H---HhhCCC
Confidence            35679999999999988888776 56799999999999999999875421    13478999999754  2   111357


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +||+|++...-++.....-..+.+++.+.+.|+|||+++....
T Consensus       150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            8999998654443111111236789999999999999998643

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.08  E-value=1.3e-09  Score=102.88  Aligned_cols=112  Identities=14%  Similarity=0.078  Sum_probs=82.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|||+|+.+..++..  ..+.|+++|+++.+++.++++++..+.. ++.+++.|+.....      ..+.||
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~------~~~~fD  142 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGA------AVPKFD  142 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhh------hccCCC
Confidence            47789999999999988777664  2458999999999999999998876543 58888998754322      235699


Q ss_pred             EEEEccc------hh------hccCCHH-------HHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          108 LVCCFQH------LQ------MCFETEE-------RARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       108 lV~~~~~------lh------~~fes~~-------~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +|++.-.      ++      +.+ +.+       ...++|+++.+.|||||+++.+|+.-
T Consensus       143 ~Vl~D~Pcsg~G~~~~~p~~~~~~-~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       143 AILLDAPCSGEGVIRKDPSRKKNW-SEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             EEEEcCCCCCCcccccChhhhhcC-CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            9986321      11      001 111       23569999999999999999886553

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.08  E-value=1.6e-09  Score=109.15  Aligned_cols=114  Identities=17%  Similarity=0.101  Sum_probs=84.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|||+|+.+..++..  +.++++++|+|+.+++.++++++..+.. ++++.++|+...+.  .   ..++||
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~--~---~~~~fD  309 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTE--Y---VQDTFD  309 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhh--h---hhccCC
Confidence            36789999999999988777665  3569999999999999999998876543 58899999865331  0   246799


Q ss_pred             EEEEcc---chhhc--------cCCH-------HHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          108 LVCCFQ---HLQMC--------FETE-------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       108 lV~~~~---~lh~~--------fes~-------~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .|++..   ++..+        ..+.       ....++|.++.+.|||||+++.+|+.-
T Consensus       310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            998732   12221        0111       134678999999999999999887664

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.07  E-value=1.6e-09  Score=109.10  Aligned_cols=115  Identities=15%  Similarity=0.108  Sum_probs=82.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ++.+|||+|||+|+.+..++.. +.++++|+|+++.+++.++++.+..+....+.+..+|........    ..++||.|
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~----~~~~fD~V  313 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA----ENEQFDRI  313 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc----cccccCEE
Confidence            6889999999999988887765 446999999999999999999987654434455667765432210    24689999


Q ss_pred             EEc------cchhhc-----cCCHH-------HHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCF------QHLQMC-----FETEE-------RARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~------~~lh~~-----fes~~-------~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ++.      ..++..     ..+.+       ..+++|.++.++|||||+++.+|+.-
T Consensus       314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            852      123220     00111       24689999999999999999886654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.07  E-value=5.6e-10  Score=102.55  Aligned_cols=109  Identities=25%  Similarity=0.223  Sum_probs=82.8

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-----------CCCceeEEEEcCCCCCchhh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFET   97 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-----------~~~~~v~f~~~D~~~~~~~~   97 (357)
                      ..++.+||..|||+|.++..++..+. +|+|+|+|+.+|++|.+.....           ....++++.++|.+..+.. 
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~-  112 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE-  112 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS-
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh-
Confidence            45678999999999999988888776 9999999999999986543320           0122578999999884431 


Q ss_pred             hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        98 ~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                          ..++||+|.-..+++- + +.+...+..+.++++|+|||.++..
T Consensus       113 ----~~g~fD~iyDr~~l~A-l-pp~~R~~Ya~~l~~ll~p~g~~lLi  154 (218)
T PF05724_consen  113 ----DVGKFDLIYDRTFLCA-L-PPEMRERYAQQLASLLKPGGRGLLI  154 (218)
T ss_dssp             ----CHHSEEEEEECSSTTT-S--GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred             ----hcCCceEEEEeccccc-C-CHHHHHHHHHHHHHHhCCCCcEEEE
Confidence                1258999998888875 4 5677889999999999999995443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.07  E-value=1.5e-10  Score=104.92  Aligned_cols=141  Identities=18%  Similarity=0.288  Sum_probs=96.9

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      -.++|||||||| .+..-++.-..+++|+|||+.||+.|.++---.      ...++|+..  |....  ....||+|+.
T Consensus       126 F~~~lDLGCGTG-L~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD------~L~~Aea~~--Fl~~~--~~er~DLi~A  194 (287)
T COG4976         126 FRRMLDLGCGTG-LTGEALRDMADRLTGVDISENMLAKAHEKGLYD------TLYVAEAVL--FLEDL--TQERFDLIVA  194 (287)
T ss_pred             cceeeecccCcC-cccHhHHHHHhhccCCchhHHHHHHHHhccchH------HHHHHHHHH--Hhhhc--cCCcccchhh
Confidence            478999999999 443334555568999999999999998762110      123333321  21111  3578999999


Q ss_pred             ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEeecc
Q 018352          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE  191 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~~  191 (357)
                      .-++-| +   .....++--+..+|+|||.|.+++-+..                                         
T Consensus       195 aDVl~Y-l---G~Le~~~~~aa~~L~~gGlfaFSvE~l~-----------------------------------------  229 (287)
T COG4976         195 ADVLPY-L---GALEGLFAGAAGLLAPGGLFAFSVETLP-----------------------------------------  229 (287)
T ss_pred             hhHHHh-h---cchhhHHHHHHHhcCCCceEEEEecccC-----------------------------------------
Confidence            999999 3   3567789999999999999998743210                                         


Q ss_pred             cCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCc
Q 018352          192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (357)
Q Consensus       192 ~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f  240 (357)
                           -+|.   |.+..    ...|-++-+.+.++++..||+++....-
T Consensus       230 -----~~~~---f~l~p----s~RyAH~~~YVr~~l~~~Gl~~i~~~~t  266 (287)
T COG4976         230 -----DDGG---FVLGP----SQRYAHSESYVRALLAASGLEVIAIEDT  266 (287)
T ss_pred             -----CCCC---eecch----hhhhccchHHHHHHHHhcCceEEEeecc
Confidence                 0111   22222    2347778888999999999999987643

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.07  E-value=3.3e-09  Score=105.42  Aligned_cols=112  Identities=17%  Similarity=0.109  Sum_probs=82.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++.+..+.  ++.|+++|+....+.     ..++||+
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~-----~~~~FDL  322 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMP-----SEGKWDI  322 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccc-----cCCCccE
Confidence            45679999999999888777654 567999999999999999999876543  789999998654321     1357999


Q ss_pred             EEEccchhh-----------------cc----CCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQM-----------------CF----ETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~-----------------~f----es~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|+-...-                 ++    ...+-.+++++.+.+.|+|||.+++.+..
T Consensus       323 IVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~  383 (423)
T PRK14966        323 IVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF  383 (423)
T ss_pred             EEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence            999653210                 00    01123567888899999999998876543

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.06  E-value=2.7e-09  Score=107.66  Aligned_cols=125  Identities=17%  Similarity=0.132  Sum_probs=87.9

Q ss_pred             HHHHHHcC--CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352           22 TALIKIYS--HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (357)
Q Consensus        22 s~Li~~~~--~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~   97 (357)
                      +.++...+  .++.+|||+|||.|+.+..++..  +.++++++|+++.+++.++++.+..+.. ++.++++|+...... 
T Consensus       241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~-  318 (434)
T PRK14901        241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLEL-  318 (434)
T ss_pred             HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccc-
Confidence            34444433  36789999999999988887765  3468999999999999999998876543 589999998764310 


Q ss_pred             hhhhcCCcccEEEEcc------chhhc-----cCCHHH-------HHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           98 QMQEKANQADLVCCFQ------HLQMC-----FETEER-------ARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        98 ~l~~~~~~FDlV~~~~------~lh~~-----fes~~~-------~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                       .....++||.|++..      .++.-     .-+.++       ..++|.++.++|||||+++..|+.-
T Consensus       319 -~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        319 -KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             -cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence             000246899999632      22210     001122       4688999999999999998776543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.04  E-value=2.2e-09  Score=110.24  Aligned_cols=109  Identities=15%  Similarity=0.138  Sum_probs=81.0

Q ss_pred             CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ..+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+...++.++++|+... +      ..++||+|+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~------~~~~fDlIv  211 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-I------EKQKFDFIV  211 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-C------cCCCccEEE
Confidence            468999999999877776654 55699999999999999999987665444688999997541 2      246899999


Q ss_pred             Eccchh--------------h-----ccC---CHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          111 CFQHLQ--------------M-----CFE---TEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       111 ~~~~lh--------------~-----~fe---s~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |+-...              |     .+.   ..+..+.+++++.++|+|||.+++.+-
T Consensus       212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig  270 (506)
T PRK01544        212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG  270 (506)
T ss_pred             ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence            854211              0     010   123456788999999999999987743

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.03  E-value=9.5e-09  Score=91.12  Aligned_cols=122  Identities=16%  Similarity=0.114  Sum_probs=95.2

Q ss_pred             HHHHHHHHcC-CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352           20 AKTALIKIYS-HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (357)
Q Consensus        20 vks~Li~~~~-~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~   97 (357)
                      |+...+.++. .++.+++|+|||+|..+..|+.. +.++++++|-++++++..+++.+..+ ..+++.+.+|+-..--  
T Consensus        22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~--   98 (187)
T COG2242          22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEALP--   98 (187)
T ss_pred             HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHhhc--
Confidence            4455555553 48899999999999999999855 56799999999999999988887766 4588999999854211  


Q ss_pred             hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus        98 ~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                          ...+||.|++..+        .....+|+.+...|||||++++....-+.+...+
T Consensus        99 ----~~~~~daiFIGGg--------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~  145 (187)
T COG2242          99 ----DLPSPDAIFIGGG--------GNIEEILEAAWERLKPGGRLVANAITLETLAKAL  145 (187)
T ss_pred             ----CCCCCCEEEECCC--------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHH
Confidence                1127999998874        2356789999999999999999977766554433

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.02  E-value=3.4e-09  Score=112.90  Aligned_cols=119  Identities=16%  Similarity=0.159  Sum_probs=89.4

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhhc
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      ++.++. ++.+|||+|||+|+.+..++..+..+|+++|+|+.+++.|++.++.++.. .+++|+++|+... +    ...
T Consensus       532 ~~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~-l----~~~  605 (702)
T PRK11783        532 MIGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW-L----KEA  605 (702)
T ss_pred             HHHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH-H----HHc
Confidence            344444 46899999999999998888877778999999999999999999877654 4689999998541 1    112


Q ss_pred             CCcccEEEEccch-------hhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          103 ANQADLVCCFQHL-------QMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       103 ~~~FDlV~~~~~l-------h~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      .++||+|++.--.       ...+........++..+.++|+|||.+++++..
T Consensus       606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~  658 (702)
T PRK11783        606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK  658 (702)
T ss_pred             CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            4689999985321       011223455677899999999999999876543

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.02  E-value=3.1e-09  Score=93.48  Aligned_cols=108  Identities=12%  Similarity=0.042  Sum_probs=79.4

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++.. ..+++|+|+++.+++.+++++...   .+++++++|+....+      ...+||.|
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~------~~~~~d~v   81 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDL------PKLQPYKV   81 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCc------cccCCCEE
Confidence            46789999999999888888776 569999999999999999887542   268899999987655      34579999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      +++..+|.   +.+....++++.  .+.++|.|++..-.++.+
T Consensus        82 i~n~Py~~---~~~~i~~~l~~~--~~~~~~~l~~q~e~a~rl  119 (169)
T smart00650       82 VGNLPYNI---STPILFKLLEEP--PAFRDAVLMVQKEVARRL  119 (169)
T ss_pred             EECCCccc---HHHHHHHHHhcC--CCcceEEEEEEHHHhHHh
Confidence            98876554   334444554432  245888888774444333

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.01  E-value=9.1e-09  Score=92.86  Aligned_cols=121  Identities=17%  Similarity=0.197  Sum_probs=83.8

Q ss_pred             HHHcCCCCC-EEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh--h
Q 018352           25 IKIYSHPYV-TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM--Q  100 (357)
Q Consensus        25 i~~~~~~~~-~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l--~  100 (357)
                      ++++++... +|||||||+|..+..++.+ +.-...-.|+++..+...+......+...-..-+..|+.........  .
T Consensus        18 L~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~   97 (204)
T PF06080_consen   18 LKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP   97 (204)
T ss_pred             HHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccc
Confidence            344555555 5999999999999988876 55578889999988766555544332111112245666654221000  0


Q ss_pred             hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      ....+||+|+|...+|.+  +.+..+.+++.+.++|++||.|++-.|
T Consensus        98 ~~~~~~D~i~~~N~lHI~--p~~~~~~lf~~a~~~L~~gG~L~~YGP  142 (204)
T PF06080_consen   98 LSPESFDAIFCINMLHIS--PWSAVEGLFAGAARLLKPGGLLFLYGP  142 (204)
T ss_pred             cCCCCcceeeehhHHHhc--CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            024689999999999984  577789999999999999999987744

The function of this family is unknown.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.01  E-value=3.6e-09  Score=98.25  Aligned_cols=106  Identities=11%  Similarity=0.072  Sum_probs=81.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~~F  106 (357)
                      +..+|||+|||+|..+..++..  +.++++++|+++++++.|++.++..+...+++++.+|+... + ..+..  ..++|
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-L-~~l~~~~~~~~f  145 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-L-DQLLNNDPKPEF  145 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-H-HHHHhCCCCCCC
Confidence            4679999999999766666554  35699999999999999999998877666799999998652 1 11111  14689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|++..       .......++..+.++|+|||.+++.
T Consensus       146 D~VfiDa-------~k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        146 DFAFVDA-------DKPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             CEEEECC-------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9997654       2345567899999999999998875

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.01  E-value=5.7e-09  Score=105.66  Aligned_cols=112  Identities=16%  Similarity=0.091  Sum_probs=83.5

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|||+|+.+..++..  +.++++|+|+++.+++.++++.+..+.. ++.++++|+.....  .   ..++||
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~--~---~~~~fD  322 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHE--K---FAEKFD  322 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccc--h---hcccCC
Confidence            36789999999999988887765  3569999999999999999998776543 58999999866321  0   126799


Q ss_pred             EEEEccch------------hhccCCHHH-------HHHHHHHHHhcccCCcEEEEEeCC
Q 018352          108 LVCCFQHL------------QMCFETEER-------ARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       108 lV~~~~~l------------h~~fes~~~-------~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +|++....            .+ ..+..+       ...+|+++.++|||||+++.+++.
T Consensus       323 ~Vl~D~Pcsg~G~~~~~p~~~~-~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        323 KILVDAPCSGLGVIRRKPDIKY-NKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             EEEEcCCCCCCeeeccCcchhh-cCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            99875321            11 112222       356899999999999999977554

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.01  E-value=4.7e-09  Score=101.73  Aligned_cols=101  Identities=11%  Similarity=0.015  Sum_probs=76.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..++.+|||+|||+|..+..+++..  .++|+|+|+++++++.|+++.+..+. .++.++++|+.....      ...+|
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~------~~~~f  150 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVP------EFAPY  150 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhccc------ccCCc
Confidence            3467899999999998777776642  24799999999999999998876544 368899999755322      23579


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|++..+.+.          ....+.+.|+|||++++..
T Consensus       151 D~Ii~~~g~~~----------ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        151 DVIFVTVGVDE----------VPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             cEEEECCchHH----------hHHHHHHhcCCCCEEEEEe
Confidence            99998875544          1233567899999988754

>PHA03411 putative methyltransferase; Provisional

Probab=99.01  E-value=2.5e-09  Score=100.73  Aligned_cols=101  Identities=14%  Similarity=0.039  Sum_probs=75.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ...+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++..      ++.++++|+.....       ..+||+|
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~v~~v~~D~~e~~~-------~~kFDlI  130 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------EAEWITSDVFEFES-------NEKFDVV  130 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------CCEEEECchhhhcc-------cCCCcEE
Confidence            4579999999999777766554 34699999999999999988642      57889999875322       3689999


Q ss_pred             EEccchhhccCCHH--H---------------HHHHHHHHHhcccCCcEEEEE
Q 018352          110 CCFQHLQMCFETEE--R---------------ARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       110 ~~~~~lh~~fes~~--~---------------~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +++..++. ....+  .               ..+++..+..+|+|+|.+++.
T Consensus       131 IsNPPF~~-l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        131 ISNPPFGK-INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             EEcCCccc-cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            99887665 21111  1               246778888999999977665

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=1.8e-08  Score=96.09  Aligned_cols=114  Identities=20%  Similarity=0.262  Sum_probs=82.6

Q ss_pred             EEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEc
Q 018352           34 TVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (357)
Q Consensus        34 ~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~  112 (357)
                      +|||||||+|..+..++... ...|+|+|+|+.+++.|++....++. .++.+++.|.+.. +       .++||+|+|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~-~-------~~~fDlIVsN  183 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP-L-------RGKFDLIVSN  183 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc-c-------CCceeEEEeC
Confidence            79999999998887777663 45999999999999999999988765 3566677776552 2       3589999986


Q ss_pred             cch------hh------------cc---CCHHHHHHHHHHHHhcccCCcEEEEEeC-Cc-hHHHHHH
Q 018352          113 QHL------QM------------CF---ETEERARRLLQNVSSLLKPGGYFLGITP-DS-STIWAKY  156 (357)
Q Consensus       113 ~~l------h~------------~f---es~~~~~~~L~~i~~~LkpGG~fi~t~p-d~-~~i~~~~  156 (357)
                      --.      +.            ++   ...+..++++.++.+.|+|||.+++-+- +. ..+.+.+
T Consensus       184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~  250 (280)
T COG2890         184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALF  250 (280)
T ss_pred             CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHH
Confidence            421      00            00   0123467899999999999999888754 44 3344433

>PRK01581 speE spermidine synthase; Validated

Probab=98.91  E-value=2.5e-08  Score=97.37  Aligned_cols=112  Identities=14%  Similarity=0.087  Sum_probs=79.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHH--hH---hcC-CCceeEEEEcCCCCCchhhhhhhc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDT--WE---NQR-KNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r--~~---~~~-~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      ....+||+||||.|..+..+++. +..+++++|+++++++.|++.  +.   ... ...+++++.+|+..  +   +...
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--f---L~~~  223 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--F---LSSP  223 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH--H---HHhc
Confidence            34579999999999888777776 457999999999999999962  11   111 13478899999864  2   1113


Q ss_pred             CCcccEEEEccchhhc-cCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          103 ANQADLVCCFQHLQMC-FETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~-fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      .++||+|++...-... ....-....+++.+++.|+|||+|+...
T Consensus       224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            5689999987521110 0011223678999999999999998774

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.89  E-value=1.6e-08  Score=91.30  Aligned_cols=117  Identities=16%  Similarity=0.177  Sum_probs=83.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ....+||||||+|..+..++.. +...++|+|++...+..|.++....+. .|+.++++|+..  +...+. +++++|.|
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~--~l~~~~-~~~~v~~i   92 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARE--LLRRLF-PPGSVDRI   92 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTT--HHHHHS-TTTSEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHH--HHhhcc-cCCchheE
Confidence            3448999999999999988876 667999999999999999998876543 389999999865  212221 35899999


Q ss_pred             EEccchhhccCCHH-----HHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          110 CCFQHLQMCFETEE-----RARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       110 ~~~~~lh~~fes~~-----~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      ..+|.=-| +....     -...++..++++|+|||.+.+.|-+.+..
T Consensus        93 ~i~FPDPW-pK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~  139 (195)
T PF02390_consen   93 YINFPDPW-PKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYA  139 (195)
T ss_dssp             EEES------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHH
T ss_pred             EEeCCCCC-cccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence            98885443 21111     12469999999999999998888776443

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00417 speE spermidine synthase

Probab=98.89  E-value=2.7e-08  Score=94.27  Aligned_cols=111  Identities=12%  Similarity=0.107  Sum_probs=79.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcC---CCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ...+||+||||+|+.+..+++.. ..+++++|+++++++.|++.+....   ...+++++.+|...  +   +....++|
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~--~---l~~~~~~y  146 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK--F---LADTENTF  146 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH--H---HHhCCCCc
Confidence            44699999999998887777664 6789999999999999998765421   12356777777643  1   11124789


Q ss_pred             cEEEEccchhhccCCHHH--HHHHHHHHHhcccCCcEEEEEeCC
Q 018352          107 DLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~--~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|++....+.  .....  ...+++++++.|+|||+++....+
T Consensus       147 DvIi~D~~~~~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~  188 (270)
T TIGR00417       147 DVIIVDSTDPV--GPAETLFTKEFYELLKKALNEDGIFVAQSES  188 (270)
T ss_pred             cEEEEeCCCCC--CcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            99998654222  11111  467899999999999999987443

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02366 spermidine synthase

Probab=98.89  E-value=1.3e-08  Score=98.10  Aligned_cols=112  Identities=11%  Similarity=0.030  Sum_probs=81.5

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcC---CCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +...+||+||||.|+.+..+++.+ ..+++.+||++.+++.|++.+....   ...+++++.+|+...-  ...  ..++
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l--~~~--~~~~  165 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL--KNA--PEGT  165 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH--hhc--cCCC
Confidence            456899999999999888887764 5789999999999999999875421   1347899999975411  100  2468


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ||+|++-..-+......--.+.+++.+.++|+|||+++..
T Consensus       166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            9999986543331111112467899999999999999764

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.88  E-value=1.4e-08  Score=94.25  Aligned_cols=96  Identities=26%  Similarity=0.291  Sum_probs=79.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ...+|||||+|.|..+..+++. +..+++..|+ ++.++.+++   .    .+++++.+|.+ .++      + . +|+|
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~----~rv~~~~gd~f-~~~------P-~-~D~~  162 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A----DRVEFVPGDFF-DPL------P-V-ADVY  162 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T----TTEEEEES-TT-TCC------S-S-ESEE
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c----cccccccccHH-hhh------c-c-ccce
Confidence            5578999999999988888776 5669999999 778888877   2    27999999998 555      3 4 9999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCC--cEEEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI  145 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpG--G~fi~t  145 (357)
                      ++...+|. + +.++..++|+++++.|+||  |++++.
T Consensus       163 ~l~~vLh~-~-~d~~~~~iL~~~~~al~pg~~g~llI~  198 (241)
T PF00891_consen  163 LLRHVLHD-W-SDEDCVKILRNAAAALKPGKDGRLLII  198 (241)
T ss_dssp             EEESSGGG-S--HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred             eeehhhhh-c-chHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence            99999998 6 6788999999999999999  999877

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.88  E-value=2.2e-08  Score=95.54  Aligned_cols=107  Identities=17%  Similarity=0.212  Sum_probs=79.5

Q ss_pred             CCEEEEECCCCChhHHHHHH----h-----cCCeEEEEeCChHHHHHHHHHh-H-----h-----------c------C-
Q 018352           32 YVTVCDLYCGAGVDVDKWET----A-----LIANYIGIDVATSGIGEARDTW-E-----N-----------Q------R-   78 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~----~-----~~~~v~GiDiS~~~l~~A~~r~-~-----~-----------~------~-   78 (357)
                      ..+|+..||++|.....++-    .     ...+|+|+|||+.+|+.|++-. .     .           .      + 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            47999999999975543322    1     1247999999999999998721 1     0           0      0 


Q ss_pred             ------CCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           79 ------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        79 ------~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                            ....+.|.+.|+...++.     ..+.||+|+|.+++.| | +.+..+++++++++.|+|||+|++-
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~-----~~~~fD~I~cRNvliy-F-~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWA-----VPGPFDAIFCRNVMIY-F-DKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCc-----cCCCcceeeHhhHHhc-C-CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                  112468888888764431     2478999999999999 7 6677899999999999999988755

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.87  E-value=1.4e-08  Score=92.66  Aligned_cols=102  Identities=14%  Similarity=0.117  Sum_probs=73.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +.++.+|||||||+|..+.-++..  +...|+++|+.+..++.|+++++..+.. ++.++++|.....-      ...+|
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~------~~apf  142 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWP------EEAPF  142 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTG------GG-SE
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccc------cCCCc
Confidence            568999999999999766665554  3457999999999999999999875433 78999999754221      24689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |.|++..+...    .  .    ..+.+.|++||++++-.-
T Consensus       143 D~I~v~~a~~~----i--p----~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  143 DRIIVTAAVPE----I--P----EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             EEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred             CEEEEeeccch----H--H----HHHHHhcCCCcEEEEEEc
Confidence            99999885433    1  2    335568999999998744

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PHA03412 putative methyltransferase; Provisional

Probab=98.85  E-value=1.2e-08  Score=94.17  Aligned_cols=97  Identities=13%  Similarity=0.125  Sum_probs=71.3

Q ss_pred             CCEEEEECCCCChhHHHHHHh----cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           32 YVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~----~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      +.+|||+|||+|..+..++..    +..+++|+|+++.+++.|++...      ++.++.+|+....+       +++||
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~-------~~~FD  116 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEF-------DTLFD  116 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccc-------cCCcc
Confidence            679999999999877766553    34589999999999999997653      47889999875433       36899


Q ss_pred             EEEEccchhhcc--------CCHHHHHHHHHHHHhcccCCcE
Q 018352          108 LVCCFQHLQMCF--------ETEERARRLLQNVSSLLKPGGY  141 (357)
Q Consensus       108 lV~~~~~lh~~f--------es~~~~~~~L~~i~~~LkpGG~  141 (357)
                      +|+++--++-.-        ....-...++..+.+++++|+.
T Consensus       117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             EEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            999986544210        0112356688888887777764

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.85  E-value=4e-08  Score=89.06  Aligned_cols=107  Identities=7%  Similarity=-0.008  Sum_probs=77.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|.....++.....+++++|+++.+++.|++.++..+.. ++.++++|+... +    .....+||+|+
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~-l----~~~~~~fDlV~  126 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSF-L----AQPGTPHNVVF  126 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHH-H----hhcCCCceEEE
Confidence            56799999999998777665666679999999999999999988776543 688999997531 1    11235799999


Q ss_pred             EccchhhccCCHHHHHHHHHHHH--hcccCCcEEEEEeCC
Q 018352          111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~--~~LkpGG~fi~t~pd  148 (357)
                      +.--++.-     -...+++.+.  .+|+|+|++++....
T Consensus       127 ~DPPy~~g-----~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        127 VDPPFRKG-----LLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             ECCCCCCC-----hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            98764331     1233445444  458999999888554

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.83  E-value=1.2e-08  Score=92.75  Aligned_cols=105  Identities=16%  Similarity=0.186  Sum_probs=77.1

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      ..+.||+|||-|+.+..++..-+.+|..+|..+..++.|++...... ..-.++++.-+.+  +.   + ..++||+|+|
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~--f~---P-~~~~YDlIW~  128 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQD--FT---P-EEGKYDLIWI  128 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----------TT-EEEEEE
T ss_pred             cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhh--cc---C-CCCcEeEEEe
Confidence            46899999999999988877778899999999999999998765421 1134566665433  21   1 3479999999


Q ss_pred             ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+++-| + +.++..++|+++...|+|+|.+++-
T Consensus       129 QW~lgh-L-TD~dlv~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen  129 QWCLGH-L-TDEDLVAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             ES-GGG-S--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hHhhcc-C-CHHHHHHHHHHHHHhCcCCcEEEEE
Confidence            999988 5 7888999999999999999988765

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.83  E-value=7.3e-08  Score=90.96  Aligned_cols=130  Identities=21%  Similarity=0.278  Sum_probs=92.3

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHH----hc------CCeEEEEeCChHHHHHHHHH-hH-
Q 018352            8 RSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWET----AL------IANYIGIDVATSGIGEARDT-WE-   75 (357)
Q Consensus         8 r~~~p~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~----~~------~~~v~GiDiS~~~l~~A~~r-~~-   75 (357)
                      |...+..-+.+-+...|+..-.....+|+-.||++|.-...++-    ..      ..+|+|+|||..+|+.|+.- |. 
T Consensus        73 R~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~  152 (268)
T COG1352          73 RDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPS  152 (268)
T ss_pred             cCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCCh
Confidence            33444444556666656554333467999999999975443321    11      35899999999999999861 11 


Q ss_pred             -----h-------c-------C-------CCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHH
Q 018352           76 -----N-------Q-------R-------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLL  129 (357)
Q Consensus        76 -----~-------~-------~-------~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L  129 (357)
                           +       .       +       ....+.|...|+.....      ..+.||+|+|-++|-| | +.+...+++
T Consensus       153 ~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~------~~~~fD~IfCRNVLIY-F-d~~~q~~il  224 (268)
T COG1352         153 RELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP------FLGKFDLIFCRNVLIY-F-DEETQERIL  224 (268)
T ss_pred             hHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc------ccCCCCEEEEcceEEe-e-CHHHHHHHH
Confidence                 0       0       0       12246788888877663      2478999999999999 7 677788999


Q ss_pred             HHHHhcccCCcEEEEE
Q 018352          130 QNVSSLLKPGGYFLGI  145 (357)
Q Consensus       130 ~~i~~~LkpGG~fi~t  145 (357)
                      +..+..|+|||++++-
T Consensus       225 ~~f~~~L~~gG~LflG  240 (268)
T COG1352         225 RRFADSLKPGGLLFLG  240 (268)
T ss_pred             HHHHHHhCCCCEEEEc
Confidence            9999999999998855

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.82  E-value=4.7e-08  Score=96.78  Aligned_cols=123  Identities=15%  Similarity=0.117  Sum_probs=95.4

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCC-CceeEEEEcCCCCCchhhhhhhc
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-NFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~-~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      .+..++. +.+|||+.|=||+++...+..+.+++|+||+|..+|+.|+++++-++. ..++.|+++|++.  +.......
T Consensus       211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~--~l~~~~~~  287 (393)
T COG1092         211 ALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK--WLRKAERR  287 (393)
T ss_pred             HHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH--HHHHHHhc
Confidence            3455555 899999999999999999888988999999999999999999988765 3357899999866  32233334


Q ss_pred             CCcccEEEEcc---c--hhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          103 ANQADLVCCFQ---H--LQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       103 ~~~FDlV~~~~---~--lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ..+||+|++--   +  -...|.-..+...++..+.++|+|||+++.++...
T Consensus       288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            56999999732   1  11113334567789999999999999999887665

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.79  E-value=1.6e-07  Score=90.84  Aligned_cols=124  Identities=14%  Similarity=0.108  Sum_probs=82.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-----cCCeEEEEeCChHHHHHHHHHhH-hcCCCceeEEEEcCCCCCchhhhhhh-
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQE-  101 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-----~~~~v~GiDiS~~~l~~A~~r~~-~~~~~~~v~f~~~D~~~~~~~~~l~~-  101 (357)
                      ++++..|+|+|||.|.-+..++.+     ....|+++|||.++|+.+.++.. ..-....+.-+++|....-.  .++. 
T Consensus        74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~--~l~~~  151 (319)
T TIGR03439        74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA--WLKRP  151 (319)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHh--hcccc
Confidence            456779999999999765544443     24589999999999999999987 32112234447777644211  1110 


Q ss_pred             -cCCcccEEEEcc-chhhccCCHHHHHHHHHHHHh-cccCCcEEEEE---eCCchHHHHHH
Q 018352          102 -KANQADLVCCFQ-HLQMCFETEERARRLLQNVSS-LLKPGGYFLGI---TPDSSTIWAKY  156 (357)
Q Consensus       102 -~~~~FDlV~~~~-~lh~~fes~~~~~~~L~~i~~-~LkpGG~fi~t---~pd~~~i~~~~  156 (357)
                       ......+|+... ++.+ | +.+.+..+|+++++ .|+|||.|++.   .-+.+.|...|
T Consensus       152 ~~~~~~r~~~flGSsiGN-f-~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY  210 (319)
T TIGR03439       152 ENRSRPTTILWLGSSIGN-F-SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAY  210 (319)
T ss_pred             cccCCccEEEEeCccccC-C-CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHh
Confidence             123456666544 6777 6 56778999999999 99999988765   23334444444

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=8.2e-08  Score=88.85  Aligned_cols=113  Identities=17%  Similarity=0.107  Sum_probs=93.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +.++.+|||.|.|+|..+..++..  +.++|+.+|+-++..+.|+++++......++++..+|+.+...       ...|
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~v  164 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDV  164 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------cccc
Confidence            458999999999999777776654  5689999999999999999999886655568889999887544       3489


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~  157 (357)
                      |+|+.         +..++-.++.+++++|||||.+++-.|+.+.+.+-+.
T Consensus       165 Dav~L---------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~  206 (256)
T COG2519         165 DAVFL---------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE  206 (256)
T ss_pred             CEEEE---------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence            99864         3345778899999999999999999999987765544

>PRK03612 spermidine synthase; Provisional

Probab=98.76  E-value=5.1e-08  Score=100.59  Aligned_cols=112  Identities=12%  Similarity=0.034  Sum_probs=80.4

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcC-CeEEEEeCChHHHHHHHHH--hHhc---C-CCceeEEEEcCCCCCchhhhhhhc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDT--WENQ---R-KNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~-~~v~GiDiS~~~l~~A~~r--~~~~---~-~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      ++..+|||||||+|..+..+++.+. .+++++|+++++++.|++.  +...   . ...+++++.+|+..  +   +...
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--~---l~~~  370 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--W---LRKL  370 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--H---HHhC
Confidence            4567999999999988888877654 7999999999999999983  3221   1 12368899999754  1   1113


Q ss_pred             CCcccEEEEccchhhccC-CHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          103 ANQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fe-s~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      .++||+|++....+.... ..--.+++++.+.+.|+|||.+++..
T Consensus       371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            468999999764332100 00113568999999999999999874

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.76  E-value=1e-07  Score=96.57  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=78.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++... .+++|+|+|++|++.|+++.+.++.. +++|+++|+....  ......+++||+|
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l--~~~~~~~~~fD~V  371 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDF--TDQPWALGGFDKV  371 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhh--hhhhhhcCCCCEE
Confidence            467899999999998877776554 69999999999999999988766443 6899999985421  1000124679999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                      ++.-.-.-       ....++.+.+ ++|++++++++ |...+.+-+
T Consensus       372 i~dPPr~g-------~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl  409 (443)
T PRK13168        372 LLDPPRAG-------AAEVMQALAK-LGPKRIVYVSC-NPATLARDA  409 (443)
T ss_pred             EECcCCcC-------hHHHHHHHHh-cCCCeEEEEEe-ChHHhhccH
Confidence            87652111       2234555555 68888766664 655554444

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=4.2e-08  Score=86.96  Aligned_cols=73  Identities=23%  Similarity=0.137  Sum_probs=62.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      .+.+|+|+|||||.+....+..+..+|+|+|+++++++.|++.....  .-+++|+++|+..  +       ...||.|+
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~--~-------~~~~dtvi  113 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSD--F-------RGKFDTVI  113 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhh--c-------CCccceEE
Confidence            56789999999998888887789899999999999999999998763  4479999999976  2       47899998


Q ss_pred             Eccc
Q 018352          111 CFQH  114 (357)
Q Consensus       111 ~~~~  114 (357)
                      ++--
T Consensus       114 mNPP  117 (198)
T COG2263         114 MNPP  117 (198)
T ss_pred             ECCC
Confidence            8753

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.75  E-value=1.1e-07  Score=90.53  Aligned_cols=115  Identities=19%  Similarity=0.215  Sum_probs=83.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .+.+|||+-|=+|++....+..+..++++||.|..+|+.|++.+.-++.. .+++|++.|+..  +...+. ..++||+|
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~--~l~~~~-~~~~fD~I  199 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK--FLKRLK-KGGRFDLI  199 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH--HHHHHH-HTT-EEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH--HHHHHh-cCCCCCEE
Confidence            47899999999999999888888889999999999999999999877653 478999999865  222232 34699999


Q ss_pred             EEc---cchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCF---QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~---~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ++-   |+-. .|.-..+...+++.+.++|+|||.++.++.+.
T Consensus       200 IlDPPsF~k~-~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~  241 (286)
T PF10672_consen  200 ILDPPSFAKS-KFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH  241 (286)
T ss_dssp             EE--SSEESS-TCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred             EECCCCCCCC-HHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            983   2211 13224567789999999999999998776554

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.74  E-value=6.5e-08  Score=93.10  Aligned_cols=108  Identities=15%  Similarity=0.110  Sum_probs=82.0

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .+-.+..|||+|||+|-.....++++..+|+|+|.|.-+ +.|++..+.++...-++++++.+.+..+      +..+.|
T Consensus        57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L------P~eKVD  129 (346)
T KOG1499|consen   57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL------PVEKVD  129 (346)
T ss_pred             hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec------Ccccee
Confidence            344688999999999966666667788999999999766 9999999988777779999999877655      458999


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                      +|++-+.=++.+ .+.-...+|-.=-+.|+|||.++
T Consensus       130 iIvSEWMGy~Ll-~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  130 IIVSEWMGYFLL-YESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             EEeehhhhHHHH-HhhhhhhhhhhhhhccCCCceEc
Confidence            998865322222 23344555555568999999875

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=1.5e-07  Score=85.15  Aligned_cols=107  Identities=14%  Similarity=0.122  Sum_probs=79.3

Q ss_pred             HHHHHc-CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh
Q 018352           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (357)
Q Consensus        23 ~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~  101 (357)
                      .+++.. ..++.+|||||||+|..+.-+++.. .+|+.+|+.++..+.|+++++..+.. ++.+.++|...---      
T Consensus        63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~------  134 (209)
T COG2518          63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWP------  134 (209)
T ss_pred             HHHHHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCC------
Confidence            334433 3588999999999996665554443 39999999999999999999887653 59999999865321      


Q ss_pred             cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      ...+||.|++..+.-.    .  +    +.+.+.||+||++++-.-
T Consensus       135 ~~aPyD~I~Vtaaa~~----v--P----~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         135 EEAPYDRIIVTAAAPE----V--P----EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCcCEEEEeeccCC----C--C----HHHHHhcccCCEEEEEEc
Confidence            3478999998874333    1  2    334568999999997744

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.72  E-value=4.5e-08  Score=89.10  Aligned_cols=106  Identities=16%  Similarity=0.151  Sum_probs=80.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc--CCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--ANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~--~~~F  106 (357)
                      ...+||+|||++|..+..++..  ..++|+.+|++++..+.|++.++..+...+++++.+|+..  ....+...  .++|
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~--~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE--VLPELANDGEEGQF  122 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH--HHHHHHHTTTTTSE
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh--hHHHHHhccCCCce
Confidence            4579999999999777777765  3579999999999999999998876666689999999854  21222211  3689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|++-..       ..+...++..+.++|+|||.+++.
T Consensus       123 D~VFiDa~-------K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  123 DFVFIDAD-------KRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             EEEEEEST-------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEccc-------ccchhhHHHHHhhhccCCeEEEEc
Confidence            99987652       334566788888999999999988

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.72  E-value=2.3e-07  Score=83.36  Aligned_cols=113  Identities=8%  Similarity=-0.006  Sum_probs=78.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      .+.+|||++||+|.....++..+..+++++|+++.+++.+++..+..+...+++++.+|+... + ..+......||+|+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~-l-~~~~~~~~~~dvv~  126 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA-L-KFLAKKPTFDNVIY  126 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH-H-HHhhccCCCceEEE
Confidence            478999999999998888888887899999999999999999887765544688999998431 1 11111123488888


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      .--.+..  ...+..-..+.+ ..+|+++|.+++..+.
T Consensus       127 ~DPPy~~--~~~~~~l~~l~~-~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       127 LDPPFFN--GALQALLELCEN-NWILEDTVLIVVEEDR  161 (189)
T ss_pred             ECcCCCC--CcHHHHHHHHHH-CCCCCCCeEEEEEecC
Confidence            7553322  112222223322 4579999998887655

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.72  E-value=7.6e-08  Score=88.16  Aligned_cols=114  Identities=18%  Similarity=0.303  Sum_probs=74.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCC-Ccee--EEEEcC--------------CC-
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK-NFIA--EFFEAD--------------PC-   91 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~-~~~v--~f~~~D--------------~~-   91 (357)
                      .+..+|||||-.|..+..+++. +...++|+||++..|+.|++..+.... ...+  .|.+.+              .. 
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            3578999999999777777665 667899999999999999987643100 0000  000000              00 


Q ss_pred             CCch---------------hhhhhhcCCcccEEEEccc---hhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           92 AENF---------------ETQMQEKANQADLVCCFQH---LQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        92 ~~~~---------------~~~l~~~~~~FDlV~~~~~---lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +..+               .+-+......||+|+|...   +|-=+ +.+-++++++.++++|.|||+|++-
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNw-gD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNW-GDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEeccc-ccHHHHHHHHHHHHhhCcCcEEEEc
Confidence            0000               0011113468999999654   33212 4677999999999999999999876

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.71  E-value=5e-07  Score=85.20  Aligned_cols=112  Identities=19%  Similarity=0.221  Sum_probs=91.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-c--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ...+||||+||.|+.+.-.+.. +  ...+...|.|+..++..++.+++.+...-++|.++|+++..-   +....-..|
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~---l~~l~p~P~  211 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS---LAALDPAPT  211 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH---hhccCCCCC
Confidence            4579999999999887766554 2  368999999999999999999988777667999999987432   221234678


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ++++...+.+ |.+.+-.++.++.+++++.|||++|-|.
T Consensus       212 l~iVsGL~El-F~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  212 LAIVSGLYEL-FPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             EEEEecchhh-CCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            9888776666 8887888899999999999999999994

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.71  E-value=1.1e-08  Score=92.97  Aligned_cols=111  Identities=21%  Similarity=0.309  Sum_probs=91.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ....++|||||.|.....+...+..+++-+|.|-.|++.|+..-. .  ...+...++|-...++      +.+++|+|+
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p--~i~~~~~v~DEE~Ldf------~ens~DLii  142 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-P--SIETSYFVGDEEFLDF------KENSVDLII  142 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-C--ceEEEEEecchhcccc------cccchhhhh
Confidence            456899999999988888888889999999999999999876422 2  2356677888777666      679999999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~  154 (357)
                      +..++||    ..+....+..+...|||+|.||+.....+.+++
T Consensus       143 sSlslHW----~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyE  182 (325)
T KOG2940|consen  143 SSLSLHW----TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYE  182 (325)
T ss_pred             hhhhhhh----hccCchHHHHHHHhcCCCccchhHHhccccHHH
Confidence            9999999    345667788999999999999999888877754

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.70  E-value=4.2e-07  Score=84.76  Aligned_cols=149  Identities=16%  Similarity=0.100  Sum_probs=98.2

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCce
Q 018352            4 LPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFI   82 (357)
Q Consensus         4 ~~~~r~~~p~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~   82 (357)
                      +|.+-+|...    .||-..+-+.-...+..+||+|||+|..+..++.. +.+.++++|.|+.+|..|.++.........
T Consensus       125 IPRpETEE~V----~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~  200 (328)
T KOG2904|consen  125 IPRPETEEWV----EAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGR  200 (328)
T ss_pred             ecCccHHHHH----HHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCc
Confidence            4444444433    33333333333335568999999999877777665 677999999999999999998877666557


Q ss_pred             eEEEEcCCCCCchhhhhhhcCCcccEEEEccchhh----------------------ccCCHHHHHHHHHHHHhcccCCc
Q 018352           83 AEFFEADPCAENFETQMQEKANQADLVCCFQHLQM----------------------CFETEERARRLLQNVSSLLKPGG  140 (357)
Q Consensus        83 v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~----------------------~fes~~~~~~~L~~i~~~LkpGG  140 (357)
                      +..++.+.....++.. ....++.|+++|+--.-.                      -.+..+.+..++.-+.|.|+|||
T Consensus       201 i~v~~~~me~d~~~~~-~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg  279 (328)
T KOG2904|consen  201 IEVIHNIMESDASDEH-PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGG  279 (328)
T ss_pred             eEEEeccccccccccc-ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCC
Confidence            7777666555444321 114588999998642110                      01112234668888999999999


Q ss_pred             EEEEEe---CCchHHHHHHH
Q 018352          141 YFLGIT---PDSSTIWAKYQ  157 (357)
Q Consensus       141 ~fi~t~---pd~~~i~~~~~  157 (357)
                      .+.+..   +....+.+.+.
T Consensus       280 ~~~le~~~~~~~~~lv~~~m  299 (328)
T KOG2904|consen  280 FEQLELVERKEHSYLVRIWM  299 (328)
T ss_pred             eEEEEecccccCcHHHHHHH
Confidence            998874   45566665554

>PLN02476 O-methyltransferase

Probab=98.70  E-value=1.9e-07  Score=88.67  Aligned_cols=106  Identities=8%  Similarity=0.020  Sum_probs=83.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh--hcCCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~--~~~~~F  106 (357)
                      +..+|||||||+|..+..++..  ..++++.+|.+++.++.|++.++..+...+++++.+|+... + ..+.  ...++|
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~-L-~~l~~~~~~~~F  195 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES-L-KSMIQNGEGSSY  195 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-H-HHHHhcccCCCC
Confidence            4679999999999777766654  35689999999999999999998877766899999998542 1 1111  113689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|+.-.       ...+...+++.+.++|+|||.+++.
T Consensus       196 D~VFIDa-------~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        196 DFAFVDA-------DKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             CEEEECC-------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            9997654       3456778899999999999999876

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.68  E-value=1.2e-07  Score=87.60  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=91.0

Q ss_pred             CEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      ..+||||||.|..+..+++. +-..++|||+....+..|.+++...+.. |+.+++.|+..  +.+.+. ++++.|-|..
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~--~l~~~~-~~~sl~~I~i  125 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVE--VLDYLI-PDGSLDKIYI  125 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHH--HHHhcC-CCCCeeEEEE
Confidence            48999999999999998887 5568999999999999999999877544 88999999855  222222 3569999999


Q ss_pred             ccchhhccCCHHH-----HHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352          112 FQHLQMCFETEER-----ARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (357)
Q Consensus       112 ~~~lh~~fes~~~-----~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~  154 (357)
                      +|.=-| +.....     ...+++.+++.|+|||.|.+.|-+.+....
T Consensus       126 ~FPDPW-pKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~  172 (227)
T COG0220         126 NFPDPW-PKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW  172 (227)
T ss_pred             ECCCCC-CCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence            886554 322111     246999999999999999999888755444

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.67  E-value=3e-07  Score=81.50  Aligned_cols=112  Identities=19%  Similarity=0.049  Sum_probs=71.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcC--CCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      .++.+|||||||+|-.....+.. +..+|+.+|.++ .++.++...+.+.  ...++.+...|-........+  ...+|
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~  120 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSF  120 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSB
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccC
Confidence            36789999999999655555555 577999999999 9998888877654  334677777776542211112  24689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|++.-++..    .+....+++.+.++|+++|.+++..+.
T Consensus       121 D~IlasDv~Y~----~~~~~~L~~tl~~ll~~~~~vl~~~~~  158 (173)
T PF10294_consen  121 DVILASDVLYD----EELFEPLVRTLKRLLKPNGKVLLAYKR  158 (173)
T ss_dssp             SEEEEES--S-----GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred             CEEEEecccch----HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence            99999887665    456778899999999999987777543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.66  E-value=3.8e-07  Score=85.18  Aligned_cols=118  Identities=17%  Similarity=0.194  Sum_probs=89.2

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      -+.|+.+|||.|.|+|..+..++..  +.++|+..|+.++.++.|++.++..+...++.+.+.|+....+...   ....
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~---~~~~  113 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE---LESD  113 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT----TTS
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc---ccCc
Confidence            3569999999999999888887765  6679999999999999999999988776689999999976555211   1368


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcc-cCCcEEEEEeCCchHHHHHHH
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLL-KPGGYFLGITPDSSTIWAKYQ  157 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~L-kpGG~fi~t~pd~~~i~~~~~  157 (357)
                      +|.|+.-.         .++-.++..+.++| |+||++++-.|+-+.+.+-..
T Consensus       114 ~DavfLDl---------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~  157 (247)
T PF08704_consen  114 FDAVFLDL---------PDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVE  157 (247)
T ss_dssp             EEEEEEES---------SSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHH
T ss_pred             ccEEEEeC---------CCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHH
Confidence            99996543         23445688999999 899999999999987766554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.65  E-value=1.1e-07  Score=89.11  Aligned_cols=128  Identities=21%  Similarity=0.178  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHcCC---CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcC------------
Q 018352           16 LYEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQR------------   78 (357)
Q Consensus        16 ~~nwvks~Li~~~~~---~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~------------   78 (357)
                      +..|....+-+.+.+   .+.++||||||.-  +...+.+  .+.+++..|.++..++..++-.+...            
T Consensus        38 ~~~~~L~~l~~~f~~g~~~g~~llDiGsGPt--iy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~  115 (256)
T PF01234_consen   38 ILLFFLKNLHETFSSGGVKGETLLDIGSGPT--IYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVC  115 (256)
T ss_dssp             HHHHHHHHHHHHHHTSSS-EEEEEEES-TT----GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHH
T ss_pred             hHHHHHHHHHHHhCccCcCCCEEEEeCCCcH--HHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHH
Confidence            445555555555553   4679999999984  3222222  45689999999999987766443210            


Q ss_pred             ----C-----------Ccee-EEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEE
Q 018352           79 ----K-----------NFIA-EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF  142 (357)
Q Consensus        79 ----~-----------~~~v-~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~f  142 (357)
                          .           ...+ .++.+|++..+-.......+.+||+|++.+++..+-.+.+..+++++|+.++|||||.|
T Consensus       116 ~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~L  195 (256)
T PF01234_consen  116 ELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHL  195 (256)
T ss_dssp             HHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEE
Confidence                0           0012 46788887754321100012469999999999999999999999999999999999999


Q ss_pred             EEE
Q 018352          143 LGI  145 (357)
Q Consensus       143 i~t  145 (357)
                      ++.
T Consensus       196 il~  198 (256)
T PF01234_consen  196 ILA  198 (256)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            987

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.63  E-value=1.8e-07  Score=86.44  Aligned_cols=102  Identities=14%  Similarity=0.180  Sum_probs=74.7

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEE
Q 018352            8 RSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFE   87 (357)
Q Consensus         8 r~~~p~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~   87 (357)
                      |-++|..++..|++..      +....|.|+|||.+..+    ......|..+|+-+.                +-.++.
T Consensus       163 WP~nPld~ii~~ik~r------~~~~vIaD~GCGEakiA----~~~~~kV~SfDL~a~----------------~~~V~~  216 (325)
T KOG3045|consen  163 WPENPLDVIIRKIKRR------PKNIVIADFGCGEAKIA----SSERHKVHSFDLVAV----------------NERVIA  216 (325)
T ss_pred             CCCChHHHHHHHHHhC------cCceEEEecccchhhhh----hccccceeeeeeecC----------------CCceee
Confidence            4445555555554432      56789999999999443    344557899998632                345689


Q ss_pred             cCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352           88 ADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus        88 ~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +|+...++      .+++.|++++..+|.-     .+...+++++.|+|++||.+.+.-
T Consensus       217 cDm~~vPl------~d~svDvaV~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IAE  264 (325)
T KOG3045|consen  217 CDMRNVPL------EDESVDVAVFCLSLMG-----TNLADFIKEANRILKPGGLLYIAE  264 (325)
T ss_pred             ccccCCcC------ccCcccEEEeeHhhhc-----ccHHHHHHHHHHHhccCceEEEEe
Confidence            99999888      6799999887655432     357789999999999999999883

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.63  E-value=1.3e-07  Score=91.53  Aligned_cols=111  Identities=17%  Similarity=0.168  Sum_probs=74.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|..+..++..+ .+++|+|+|+.|++.|++..+.++. .+++|+++|+.....     ...++||+|+
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~-----~~~~~~D~Vv  245 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFAT-----AQGEVPDLVL  245 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHH-----hcCCCCeEEE
Confidence            45899999999998888777654 6999999999999999999877655 369999999854221     0235799999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                      +.-.-.- .  ....   ++.+ ..++|+++++ ..+|...+.+-+
T Consensus       246 ~dPPr~G-~--~~~~---~~~l-~~~~~~~ivy-vsc~p~t~~rd~  283 (315)
T PRK03522        246 VNPPRRG-I--GKEL---CDYL-SQMAPRFILY-SSCNAQTMAKDL  283 (315)
T ss_pred             ECCCCCC-c--cHHH---HHHH-HHcCCCeEEE-EECCcccchhHH
Confidence            8743110 1  1122   2222 2356765544 445555554433

>PLN02672 methionine S-methyltransferase

Probab=98.61  E-value=3e-07  Score=100.98  Aligned_cols=112  Identities=18%  Similarity=0.108  Sum_probs=80.4

Q ss_pred             CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCC---------------CceeEEEEcCCCCCch
Q 018352           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK---------------NFIAEFFEADPCAENF   95 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~---------------~~~v~f~~~D~~~~~~   95 (357)
                      +.+|||+|||+|.....++.. +..+++|+|+|+.+++.|+++.+.+..               ..+++|+++|+.....
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            468999999999888877765 446999999999999999998875421               1368999999865321


Q ss_pred             hhhhhhcCCcccEEEEccch------h---------------h------cc-------CCHHHHHHHHHHHHhcccCCcE
Q 018352           96 ETQMQEKANQADLVCCFQHL------Q---------------M------CF-------ETEERARRLLQNVSSLLKPGGY  141 (357)
Q Consensus        96 ~~~l~~~~~~FDlV~~~~~l------h---------------~------~f-------es~~~~~~~L~~i~~~LkpGG~  141 (357)
                           ....+||+|+++--.      .               |      ++       ....-.++++.++.++|+|||.
T Consensus       199 -----~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~  273 (1082)
T PLN02672        199 -----DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI  273 (1082)
T ss_pred             -----ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence                 012369999985421      0               0      00       0112347889999999999999


Q ss_pred             EEEEeCC
Q 018352          142 FLGITPD  148 (357)
Q Consensus       142 fi~t~pd  148 (357)
                      +++-+-.
T Consensus       274 l~lEiG~  280 (1082)
T PLN02672        274 MIFNMGG  280 (1082)
T ss_pred             EEEEECc
Confidence            9987543

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.61  E-value=5.3e-07  Score=87.31  Aligned_cols=98  Identities=15%  Similarity=0.088  Sum_probs=65.9

Q ss_pred             HHHHHHHHHH---cCC--CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc-CCCceeEEEE-cC
Q 018352           18 EFAKTALIKI---YSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFE-AD   89 (357)
Q Consensus        18 nwvks~Li~~---~~~--~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~-~~~~~v~f~~-~D   89 (357)
                      .|+...|...   .++  ...+|||||||+|.....+... ...+++|+||++.+++.|++..+.+ +...++.+.. .|
T Consensus        96 ~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~  175 (321)
T PRK11727         96 HHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKD  175 (321)
T ss_pred             HHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccc
Confidence            5665554332   222  4679999999999665555443 4568999999999999999999877 5655677754 33


Q ss_pred             CCCCchhhhhhhcCCcccEEEEccchhh
Q 018352           90 PCAENFETQMQEKANQADLVCCFQHLQM  117 (357)
Q Consensus        90 ~~~~~~~~~l~~~~~~FDlV~~~~~lh~  117 (357)
                      ...  +...+....+.||+|+|+--+|-
T Consensus       176 ~~~--i~~~i~~~~~~fDlivcNPPf~~  201 (321)
T PRK11727        176 SKA--IFKGIIHKNERFDATLCNPPFHA  201 (321)
T ss_pred             hhh--hhhcccccCCceEEEEeCCCCcC
Confidence            221  11111113468999999987765

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.60  E-value=1.4e-07  Score=87.67  Aligned_cols=93  Identities=18%  Similarity=0.300  Sum_probs=69.0

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      ..++||||.|.|+.+..+ ..-+.+|+++++|..|....+    .++    .+.+  |+.+  ..    ..+.+||+|+|
T Consensus        95 ~~~lLDlGAGdG~VT~~l-~~~f~~v~aTE~S~~Mr~rL~----~kg----~~vl--~~~~--w~----~~~~~fDvIsc  157 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERL-APLFKEVYATEASPPMRWRLS----KKG----FTVL--DIDD--WQ----QTDFKFDVISC  157 (265)
T ss_pred             CCceEEecCCCcHHHHHH-HhhcceEEeecCCHHHHHHHH----hCC----CeEE--ehhh--hh----ccCCceEEEee
Confidence            457999999999888887 446778999999999965433    331    2223  2222  11    13468999999


Q ss_pred             ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+.+.-+.    ++..+|+.+++.|+|+|++++.
T Consensus       158 LNvLDRc~----~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  158 LNVLDRCD----RPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             hhhhhccC----CHHHHHHHHHHHhCCCCEEEEE
Confidence            99776643    5788999999999999999876

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.56  E-value=3.3e-07  Score=82.77  Aligned_cols=107  Identities=13%  Similarity=0.134  Sum_probs=65.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEE
Q 018352            7 PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFF   86 (357)
Q Consensus         7 ~r~~~p~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~   86 (357)
                      .|-.+|...+.+|++      ..++...|.|+|||.+..+... . ....|...|+-..                +-.++
T Consensus        54 ~WP~nPvd~iI~~l~------~~~~~~viaD~GCGdA~la~~~-~-~~~~V~SfDLva~----------------n~~Vt  109 (219)
T PF05148_consen   54 KWPVNPVDVIIEWLK------KRPKSLVIADFGCGDAKLAKAV-P-NKHKVHSFDLVAP----------------NPRVT  109 (219)
T ss_dssp             TSSS-HHHHHHHHHC------TS-TTS-EEEES-TT-HHHHH----S---EEEEESS-S----------------STTEE
T ss_pred             cCCCCcHHHHHHHHH------hcCCCEEEEECCCchHHHHHhc-c-cCceEEEeeccCC----------------CCCEE
Confidence            455666666666655      1245679999999999555332 2 2236999998632                12368


Q ss_pred             EcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352           87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus        87 ~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      .+|+...++      ++++.|+|++..+|..     .+...+++++.|+|||||.+.+.-..
T Consensus       110 acdia~vPL------~~~svDv~VfcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV~  160 (219)
T PF05148_consen  110 ACDIANVPL------EDESVDVAVFCLSLMG-----TNWPDFIREANRVLKPGGILKIAEVK  160 (219)
T ss_dssp             ES-TTS-S--------TT-EEEEEEES---S-----S-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             EecCccCcC------CCCceeEEEEEhhhhC-----CCcHHHHHHHHheeccCcEEEEEEec
Confidence            899999888      6799999988776544     24678999999999999999988433

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.54  E-value=6.8e-07  Score=85.79  Aligned_cols=80  Identities=20%  Similarity=0.220  Sum_probs=62.8

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||||||+|..+..++.. ..+++|+|+++.+++.+++++...+...+++++++|+...++        ..||+
T Consensus        34 ~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--------~~~d~  104 (294)
T PTZ00338         34 IKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--------PYFDV  104 (294)
T ss_pred             CCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--------cccCE
Confidence            457889999999999887777665 458999999999999999988754333478999999976443        46899


Q ss_pred             EEEccchhh
Q 018352          109 VCCFQHLQM  117 (357)
Q Consensus       109 V~~~~~lh~  117 (357)
                      |+++...+.
T Consensus       105 VvaNlPY~I  113 (294)
T PTZ00338        105 CVANVPYQI  113 (294)
T ss_pred             EEecCCccc
Confidence            987654443

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.53  E-value=1.7e-06  Score=77.13  Aligned_cols=112  Identities=20%  Similarity=0.270  Sum_probs=76.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCC--------eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIA--------NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~--------~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l   99 (357)
                      .++..|||-.||+|..+...+..  ...        +++|+|+++.+++.|+++.+..+....+.+.+.|+...++    
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~----  102 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL----  102 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG----
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc----
Confidence            46789999999999888765443  222        3899999999999999999877666678999999987664    


Q ss_pred             hhcCCcccEEEEccchhhccCC----HHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          100 QEKANQADLVCCFQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes----~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                        .++++|+|+++--.-.-..+    .+-.+.+++++.++|++ ..+++++.+
T Consensus       103 --~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~  152 (179)
T PF01170_consen  103 --PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN  152 (179)
T ss_dssp             --TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC
T ss_pred             --ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence              46799999997543322222    23345778999999999 444444443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.53  E-value=1.1e-06  Score=83.41  Aligned_cols=74  Identities=12%  Similarity=0.042  Sum_probs=58.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++.... +++|+|+++.|++.++++...    .+++++++|+...++.      +..+|.|
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~------~~~~~~v  109 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS------ELQPLKV  109 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH------HcCcceE
Confidence            4678999999999988888877654 999999999999999887643    2789999999876552      1125888


Q ss_pred             EEccc
Q 018352          110 CCFQH  114 (357)
Q Consensus       110 ~~~~~  114 (357)
                      +++..
T Consensus       110 v~NlP  114 (272)
T PRK00274        110 VANLP  114 (272)
T ss_pred             EEeCC
Confidence            77654

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.53  E-value=7.4e-07  Score=81.63  Aligned_cols=104  Identities=15%  Similarity=0.097  Sum_probs=81.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEE-cCCCCCchhhhhhhcCCccc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFE-ADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~-~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ...+|||||.+.|..+..++.. + ..+++.+|+++++.+.|++.++..+...++..+. +|+... +..   ...++||
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~-l~~---~~~~~fD  134 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV-LSR---LLDGSFD  134 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-HHh---ccCCCcc
Confidence            5679999999999666655554 3 5689999999999999999999877766788888 465431 111   1368999


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|++..       ...+...++..+.++|+|||.+++.
T Consensus       135 liFIDa-------dK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         135 LVFIDA-------DKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             EEEEeC-------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            997655       4556678999999999999999987

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.53  E-value=8.9e-07  Score=83.36  Aligned_cols=77  Identities=16%  Similarity=0.056  Sum_probs=61.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||||||+|..+..+++. ..+++|+|+++.+++.++++....   .+++++++|+...++        ..||.
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~--------~~~d~   94 (258)
T PRK14896         27 DTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL--------PEFNK   94 (258)
T ss_pred             CCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc--------hhceE
Confidence            346789999999999888888776 458999999999999999887542   268999999977554        34899


Q ss_pred             EEEccchhh
Q 018352          109 VCCFQHLQM  117 (357)
Q Consensus       109 V~~~~~lh~  117 (357)
                      |+++...+.
T Consensus        95 Vv~NlPy~i  103 (258)
T PRK14896         95 VVSNLPYQI  103 (258)
T ss_pred             EEEcCCccc
Confidence            998776543

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.52  E-value=7.4e-07  Score=79.77  Aligned_cols=123  Identities=14%  Similarity=0.121  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch
Q 018352           16 LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (357)
Q Consensus        16 ~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~   95 (357)
                      +.||+....     -++.+||||.||+|......+.++..+++.||.+..+++..++.++..+...++..+..|+..  +
T Consensus        32 lFniL~~~~-----~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~--~  104 (183)
T PF03602_consen   32 LFNILQPRN-----LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK--F  104 (183)
T ss_dssp             HHHHHHCH------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH--H
T ss_pred             HHHHhcccc-----cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH--H
Confidence            456655431     257899999999999888888889999999999999999999998876655568888888643  2


Q ss_pred             hhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHH--hcccCCcEEEEEeCCc
Q 018352           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDS  149 (357)
Q Consensus        96 ~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~--~~LkpGG~fi~t~pd~  149 (357)
                      ...+.....+||+|.+---...   .. ....++..+.  .+|+++|.+++-....
T Consensus       105 l~~~~~~~~~fDiIflDPPY~~---~~-~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  105 LLKLAKKGEKFDIIFLDPPYAK---GL-YYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             HHHHHHCTS-EEEEEE--STTS---CH-HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             HHhhcccCCCceEEEECCCccc---ch-HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            1222224689999988764443   11 1355666666  8999999999886554

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.51  E-value=1.1e-06  Score=88.96  Aligned_cols=103  Identities=15%  Similarity=0.120  Sum_probs=73.8

Q ss_pred             CCEEEEECCCCChhHHHHHHhc-----CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           32 YVTVCDLYCGAGVDVDKWETAL-----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~-----~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +..|||+|||+|-.....++++     ..+|++|+-++.++...+++.+.++...+++++++|+.....       +.+.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv  259 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV  259 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence            4689999999996665555543     569999999999998888887766666689999999988766       4689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                      |+|++=. |-+ |-..+-..+.|....+.|||||++|
T Consensus       260 DIIVSEl-LGs-fg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  260 DIIVSEL-LGS-FGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEEEE----BT-TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             eEEEEec-cCC-ccccccCHHHHHHHHhhcCCCCEEe
Confidence            9998732 122 2122234456888899999999886

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.47  E-value=1.8e-06  Score=80.75  Aligned_cols=106  Identities=12%  Similarity=0.050  Sum_probs=81.3

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh---cCCc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ  105 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~---~~~~  105 (357)
                      +..+||+||+++|..+..++..  ..++++.+|++++..+.|++.++..+...+++++.+|+... + ..+..   ..++
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~-L-~~l~~~~~~~~~  156 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV-L-DQMIEDGKYHGT  156 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH-H-HHHHhccccCCc
Confidence            3569999999999766666554  35699999999999999999998877667899999997541 1 11111   1368


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ||+|++-.       +......++..+.++|+|||.+++.
T Consensus       157 fD~iFiDa-------dK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        157 FDFIFVDA-------DKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             ccEEEecC-------CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence            99997654       2445667888888999999998876

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.47  E-value=8.1e-07  Score=85.96  Aligned_cols=112  Identities=21%  Similarity=0.191  Sum_probs=85.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEc-CCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~-D~~~~~~~~~l~~~~~~FD  107 (357)
                      +.+|..|||==||||+.+......+. +++|+|++..|++-|+.+.+..+.. ...+... |++..++      ...+||
T Consensus       195 v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl------~~~~vd  266 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPL------RDNSVD  266 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCC------CCCccc
Confidence            45788999999999999988766665 9999999999999999988765422 3444544 9988887      456799


Q ss_pred             EEEEccchhhc----cC-CHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          108 LVCCFQHLQMC----FE-TEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       108 lV~~~~~lh~~----fe-s~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      .|.|---.--.    -+ -.+-..++|+.++++||+||++++..|.
T Consensus       267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~  312 (347)
T COG1041         267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR  312 (347)
T ss_pred             eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC
Confidence            99985422110    01 1345788999999999999999999883

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.46  E-value=1.7e-06  Score=82.66  Aligned_cols=105  Identities=13%  Similarity=0.072  Sum_probs=83.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      .+..|||+|||.|......++++.++|++++.| +|.+.|++..+.+....++.++.+.+.+..+       +++.|+|+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-------PEk~DviI  248 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL-------PEKVDVII  248 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC-------chhccEEE
Confidence            467899999999966666666789999999987 6889999999988777889999999877665       57899987


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +- .+.|++-++.-.+..+. +++.|+|.|..+=|
T Consensus       249 SE-PMG~mL~NERMLEsYl~-Ark~l~P~GkMfPT  281 (517)
T KOG1500|consen  249 SE-PMGYMLVNERMLESYLH-ARKWLKPNGKMFPT  281 (517)
T ss_pred             ec-cchhhhhhHHHHHHHHH-HHhhcCCCCcccCc
Confidence            64 45666656555555443 56999999998766

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.45  E-value=3.3e-06  Score=79.17  Aligned_cols=86  Identities=10%  Similarity=-0.008  Sum_probs=63.1

Q ss_pred             HHHHHHHHc-CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh
Q 018352           20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (357)
Q Consensus        20 vks~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~   98 (357)
                      +...+++.. ..++.+|||+|||+|..+..++... ..++++|+++.+++.+++++..   ..+++++++|+...++.  
T Consensus        17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~--   90 (253)
T TIGR00755        17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP--   90 (253)
T ss_pred             HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh--
Confidence            334444443 3467899999999998888877665 4799999999999999887643   22688999999876651  


Q ss_pred             hhhcCCccc---EEEEccchhh
Q 018352           99 MQEKANQAD---LVCCFQHLQM  117 (357)
Q Consensus        99 l~~~~~~FD---lV~~~~~lh~  117 (357)
                            .||   +|+++..+|.
T Consensus        91 ------~~d~~~~vvsNlPy~i  106 (253)
T TIGR00755        91 ------DFPKQLKVVSNLPYNI  106 (253)
T ss_pred             ------HcCCcceEEEcCChhh
Confidence                  355   7777665544

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.44  E-value=3.2e-06  Score=85.31  Aligned_cols=115  Identities=17%  Similarity=0.186  Sum_probs=77.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++.. ..+|+|+|+++.|++.|+++.+.++. .+++|+.+|+... + ..+.....+||+|
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~-l-~~~~~~~~~~D~v  366 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETV-L-PKQPWAGQIPDVL  366 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHH-H-HHHHhcCCCCCEE
Confidence            45689999999999888776654 45899999999999999998876654 3789999998541 1 1111124579999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                      ++.-.--- +     ...+++.+.+ ++|++.+++ ..|...+.+-+
T Consensus       367 i~dPPr~G-~-----~~~~l~~l~~-l~~~~ivyv-sc~p~tlard~  405 (431)
T TIGR00479       367 LLDPPRKG-C-----AAEVLRTIIE-LKPERIVYV-SCNPATLARDL  405 (431)
T ss_pred             EECcCCCC-C-----CHHHHHHHHh-cCCCEEEEE-cCCHHHHHHHH
Confidence            87542100 0     2344555443 789876555 45655554433

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.43  E-value=1.2e-06  Score=80.91  Aligned_cols=96  Identities=14%  Similarity=0.031  Sum_probs=61.3

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCcee-EEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIA-EFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v-~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ++.+|||+|||+|+++..+++.+..+|+|+|+++.|+...   .+...   ++ .+...|+......+ +...-..+|++
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~---l~~~~---~v~~~~~~ni~~~~~~~-~~~d~~~~Dvs  147 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK---LRQDE---RVKVLERTNIRYVTPAD-IFPDFATFDVS  147 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH---HhcCC---CeeEeecCCcccCCHhH-cCCCceeeeEE
Confidence            6779999999999999988888788999999999988762   11110   22 23333444222111 10011356655


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ++..            ..++.++.++|++ |.++..+
T Consensus       148 fiS~------------~~~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       148 FISL------------ISILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             Eeeh------------HhHHHHHHHHhCc-CeEEEEc
Confidence            4432            1248889999999 8777663

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=2.8e-07  Score=78.29  Aligned_cols=76  Identities=14%  Similarity=0.145  Sum_probs=61.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      .+.+++|||||+|........-+...++|+||++++|+.++++.....  .++.+.++|+....+      ..+.||.++
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE--vqidlLqcdildle~------~~g~fDtav  119 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFE--VQIDLLQCDILDLEL------KGGIFDTAV  119 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhh--hhhheeeeeccchhc------cCCeEeeEE
Confidence            678999999999955544444467789999999999999998887653  367899999987665      458899998


Q ss_pred             Eccc
Q 018352          111 CFQH  114 (357)
Q Consensus       111 ~~~~  114 (357)
                      ++.-
T Consensus       120 iNpp  123 (185)
T KOG3420|consen  120 INPP  123 (185)
T ss_pred             ecCC
Confidence            8763

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.37  E-value=4.5e-06  Score=84.94  Aligned_cols=113  Identities=13%  Similarity=0.122  Sum_probs=82.5

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|||.|+=+..++..  +.+.+++.|+++.-++..+++++..+.. ++.+...|.....-  .   ..+.||
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~--~---~~~~fD  185 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGA--A---LPETFD  185 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhh--h---chhhcC
Confidence            47899999999999988777664  3468999999999999999988876542 57788888764221  1   236799


Q ss_pred             EEE----Eccc--hhh------ccCCH-------HHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          108 LVC----CFQH--LQM------CFETE-------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       108 lV~----~~~~--lh~------~fes~-------~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .|+    |...  ++-      -+ +.       ...+++|.++.+.|||||+++-+|+.-
T Consensus       186 ~ILvDaPCSG~G~~rk~p~~~~~~-s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        186 AILLDAPCSGEGTVRKDPDALKNW-SPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             eEEEcCCCCCCcccccCHHHhhhC-CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            998    4321  111      01 11       123689999999999999999887663

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.36  E-value=7.2e-06  Score=66.58  Aligned_cols=102  Identities=24%  Similarity=0.247  Sum_probs=69.9

Q ss_pred             EEEECCCCChhHHHHHHhcC--CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC--CchhhhhhhcC-CcccEE
Q 018352           35 VCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQEKA-NQADLV  109 (357)
Q Consensus        35 VLDlGCG~G~~l~k~~~~~~--~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~--~~~~~~l~~~~-~~FDlV  109 (357)
                      ++|+|||+|... .+.....  ..++|+|+++.++..++..... .....+.+..+|...  .++      .. ..||++
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~  123 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF------EDSASFDLV  123 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC------CCCCceeEE
Confidence            999999999754 2222222  3899999999999985555432 111016778888765  344      23 489999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                       +....++...    ....+.++.+.|+|+|.+++.....
T Consensus       124 -~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         124 -ISLLVLHLLP----PAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             -eeeeehhcCC----HHHHHHHHHHhcCCCcEEEEEeccC
Confidence             5544433132    6788999999999999999886654

>PRK04148 hypothetical protein; Provisional

Probab=98.35  E-value=6.5e-06  Score=69.73  Aligned_cols=96  Identities=14%  Similarity=0.121  Sum_probs=67.7

Q ss_pred             CCCEEEEECCCCCh-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ++.+|||+|||.|. .+..+.+.+ ..|+|+|+++.+++.|+++        .+.++.+|+++.++.     .-+.+|+|
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~-----~y~~a~li   81 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLE-----IYKNAKLI   81 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHH-----HHhcCCEE
Confidence            45789999999996 444555444 5999999999999888665        357899999987763     13679998


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .+..       ...+....+.++++.+.  .-++++.-..
T Consensus        82 ysir-------pp~el~~~~~~la~~~~--~~~~i~~l~~  112 (134)
T PRK04148         82 YSIR-------PPRDLQPFILELAKKIN--VPLIIKPLSG  112 (134)
T ss_pred             EEeC-------CCHHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence            6543       44556666777776554  3455554433

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.34  E-value=3.5e-06  Score=83.61  Aligned_cols=112  Identities=16%  Similarity=0.169  Sum_probs=77.3

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|.++..++..+ .+++|+|+++.+++.|+++.+.++.. +++|+++|+.....  .   ...+||+|+
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~--~---~~~~~D~vi  305 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFAT--A---QMSAPELVL  305 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHH--h---cCCCCCEEE
Confidence            45799999999998877776544 68999999999999999998776543 78999999854211  0   124699998


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~  157 (357)
                      +.-.-.-      -...+++.+. .++|++++++. .|...+.+-+.
T Consensus       306 ~DPPr~G------~~~~~l~~l~-~~~p~~ivyvs-c~p~TlaRDl~  344 (374)
T TIGR02085       306 VNPPRRG------IGKELCDYLS-QMAPKFILYSS-CNAQTMAKDIA  344 (374)
T ss_pred             ECCCCCC------CcHHHHHHHH-hcCCCeEEEEE-eCHHHHHHHHH
Confidence            8653111      1223444444 37888766655 56666655443

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PLN02823 spermine synthase

Probab=98.34  E-value=3.5e-06  Score=82.32  Aligned_cols=110  Identities=16%  Similarity=0.135  Sum_probs=78.1

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcC---CCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ...+||.||+|.|+.+..+++. +..+++++|+++++++.|++.+....   ...+++++.+|+...     +....++|
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~-----L~~~~~~y  177 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE-----LEKRDEKF  177 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH-----HhhCCCCc
Confidence            4579999999999888877775 46789999999999999998775321   134788999998652     12235789


Q ss_pred             cEEEEccchhh--ccCCHHHHHHHHH-HHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQM--CFETEERARRLLQ-NVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~--~fes~~~~~~~L~-~i~~~LkpGG~fi~t  145 (357)
                      |+|++-..-..  .....--.+.+++ .+.+.|+|||+++..
T Consensus       178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            99998631110  0000001346787 899999999998866

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.34  E-value=5e-06  Score=83.34  Aligned_cols=130  Identities=19%  Similarity=0.230  Sum_probs=101.4

Q ss_pred             cchHHHHHHHHH-HHHHHHcCCCCC-EEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEE
Q 018352           10 ELTHHRLYEFAK-TALIKIYSHPYV-TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFE   87 (357)
Q Consensus        10 ~~p~~~~~nwvk-s~Li~~~~~~~~-~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~   87 (357)
                      ..+..++..|.- +..|-.++.+.. ++|-+|||+-.....+.+.++..++.+|+|+..++....+....  .....+..
T Consensus        25 ~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~  102 (482)
T KOG2352|consen   25 SDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVE  102 (482)
T ss_pred             CChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEE
Confidence            344444444433 345556666666 99999999998888888889999999999999999988887532  23678899


Q ss_pred             cCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHH------HHHHHHHHHhcccCCcEEEEEeC
Q 018352           88 ADPCAENFETQMQEKANQADLVCCFQHLQMCFETEER------ARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus        88 ~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~------~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      .|+....+      ++.+||+|+.-..++..|+.+..      ....+.+++++|++||+++..+.
T Consensus       103 ~d~~~l~f------edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  103 MDMDQLVF------EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             ecchhccC------CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            99998888      67999999999999987765443      34789999999999999886643

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.34  E-value=4.9e-07  Score=84.87  Aligned_cols=99  Identities=24%  Similarity=0.332  Sum_probs=80.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      +.+..++|+|||.|..+.   ..+...++|.|++...+..|++.-.       .....+|+...++      ...+||.+
T Consensus        44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~~-------~~~~~ad~l~~p~------~~~s~d~~  107 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSGG-------DNVCRADALKLPF------REESFDAA  107 (293)
T ss_pred             CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccCCC-------ceeehhhhhcCCC------CCCccccc
Confidence            357899999999993221   1255679999999998887755421       1567899988887      67899999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ++..++|+ |.+.....++++++.++|+|||..++.
T Consensus       108 lsiavihh-lsT~~RR~~~l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen  108 LSIAVIHH-LSTRERRERALEELLRVLRPGGNALVY  142 (293)
T ss_pred             hhhhhhhh-hhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence            99999999 779999999999999999999987766

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.32  E-value=1.1e-06  Score=79.63  Aligned_cols=102  Identities=17%  Similarity=0.132  Sum_probs=72.3

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHH-hcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~-~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      ....++.+|||+.||-|.++...++ .+.+.|+++|+++.+++..++..+.++....+..+++|+.....       .+.
T Consensus        97 ~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-------~~~  169 (200)
T PF02475_consen   97 NLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-------EGK  169 (200)
T ss_dssp             TC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----------TT-
T ss_pred             hcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-------ccc
Confidence            4467899999999999999998887 35678999999999999999999888777678999999865321       478


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                      ||.|++... +.       ...+|..+.+++++||.+-
T Consensus       170 ~drvim~lp-~~-------~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  170 FDRVIMNLP-ES-------SLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEEEEE--T-SS-------GGGGHHHHHHHEEEEEEEE
T ss_pred             cCEEEECCh-HH-------HHHHHHHHHHHhcCCcEEE
Confidence            999988652 11       2346788888999998763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.32  E-value=3.1e-06  Score=87.16  Aligned_cols=117  Identities=13%  Similarity=0.091  Sum_probs=86.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .+..+||||||+|..+.+++.. +...++|+|++...+..|.++....+. .|+.++..|+..  +...+  +++++|.|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~--~~~~~--~~~sv~~i  421 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDL--ILNDL--PNNSLDGI  421 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHH--HHHhc--CcccccEE
Confidence            4678999999999999988877 557899999999999998888766543 367777776532  21122  46889999


Q ss_pred             EEccchhhccCCHH-----HHHHHHHHHHhcccCCcEEEEEeCCchHHH
Q 018352          110 CCFQHLQMCFETEE-----RARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (357)
Q Consensus       110 ~~~~~lh~~fes~~-----~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~  153 (357)
                      .++|.--| +....     -...+++.++++|||||.+.+.|-+.+...
T Consensus       422 ~i~FPDPW-pKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~  469 (506)
T PRK01544        422 YILFPDPW-IKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFY  469 (506)
T ss_pred             EEECCCCC-CCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence            99886544 21111     124689999999999999998887765443

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.28  E-value=7.9e-06  Score=78.98  Aligned_cols=97  Identities=19%  Similarity=0.194  Sum_probs=82.2

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      -...+|+|.|.|..+..+.. .+.++-|+++....+..++..+. .    .++.+.+|.+.. .        -+-|+|++
T Consensus       178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~-~--------P~~daI~m  242 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQD-T--------PKGDAIWM  242 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-C----Ccceeccccccc-C--------CCcCeEEE
Confidence            36899999999988887777 77789999999999988877764 3    378888998775 4        24569999


Q ss_pred             ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ++++|+ + +.++..++|+|+.+.|+|||.+++.
T Consensus       243 kWiLhd-w-tDedcvkiLknC~~sL~~~GkIiv~  274 (342)
T KOG3178|consen  243 KWILHD-W-TDEDCVKILKNCKKSLPPGGKIIVV  274 (342)
T ss_pred             Eeeccc-C-ChHHHHHHHHHHHHhCCCCCEEEEE
Confidence            999999 6 6788999999999999999999987

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.27  E-value=1.3e-05  Score=69.93  Aligned_cols=107  Identities=17%  Similarity=0.122  Sum_probs=84.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .+.-|||+|.|+|-.+.+.+..+  ...++.++.|++...+..+++.+      +.++.+|+.......... +...||.
T Consensus        48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~------~~ii~gda~~l~~~l~e~-~gq~~D~  120 (194)
T COG3963          48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG------VNIINGDAFDLRTTLGEH-KGQFFDS  120 (194)
T ss_pred             cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC------ccccccchhhHHHHHhhc-CCCeeee
Confidence            46789999999999998888874  46899999999999999888864      458999987755211111 4578999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|.--+-. | ......+.|+.+...|.+||.++-.+
T Consensus       121 viS~lPll~-~-P~~~~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963         121 VISGLPLLN-F-PMHRRIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             EEecccccc-C-cHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence            999776655 4 55667789999999999999998664

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.23  E-value=5.2e-06  Score=82.54  Aligned_cols=108  Identities=15%  Similarity=0.190  Sum_probs=80.0

Q ss_pred             CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      +.+|||++||+|.....++.. +..+|+++|+++.+++.+++..+.++.. ++.+.++|+... +    . ...+||+|.
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~-l----~-~~~~fD~V~  130 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANAL-L----H-EERKFDVVD  130 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHH-H----h-hcCCCCEEE
Confidence            468999999999888877654 5568999999999999999988766543 456888887431 1    1 135799998


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~  154 (357)
                      +.-     +.+   ...++..+.+.+++||+++++.-|...+..
T Consensus       131 lDP-----~Gs---~~~~l~~al~~~~~~gilyvSAtD~~~L~g  166 (382)
T PRK04338        131 IDP-----FGS---PAPFLDSAIRSVKRGGLLCVTATDTAPLCG  166 (382)
T ss_pred             ECC-----CCC---cHHHHHHHHHHhcCCCEEEEEecCchhhcC
Confidence            754     222   235677767788999999999777665533

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.21  E-value=4.8e-06  Score=75.63  Aligned_cols=118  Identities=14%  Similarity=0.174  Sum_probs=85.9

Q ss_pred             chHHHHHHHHHHHHHHHcCC-CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcC
Q 018352           11 LTHHRLYEFAKTALIKIYSH-PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD   89 (357)
Q Consensus        11 ~p~~~~~nwvks~Li~~~~~-~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D   89 (357)
                      +..+-+-.|++......... ...++|||||=+......  ..+.-.|+.||+++.                .-.+.+.|
T Consensus        30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~----------------~~~I~qqD   91 (219)
T PF11968_consen   30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ----------------HPGILQQD   91 (219)
T ss_pred             chhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCC----------------CCCceeec
Confidence            35556778888766544322 347999999975533322  234457999999852                22346777


Q ss_pred             CCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcE-----EEEEeCCch
Q 018352           90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGY-----FLGITPDSS  150 (357)
Q Consensus        90 ~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~-----fi~t~pd~~  150 (357)
                      ....++..   ...+.||+|+|..++.| +.+..+.-+|++.+++.|+|+|.     +++..|.+-
T Consensus        92 Fm~rplp~---~~~e~FdvIs~SLVLNf-VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C  153 (219)
T PF11968_consen   92 FMERPLPK---NESEKFDVISLSLVLNF-VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC  153 (219)
T ss_pred             cccCCCCC---CcccceeEEEEEEEEee-CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence            76655521   13578999999999999 77889999999999999999999     999988863

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.17  E-value=8.5e-06  Score=78.45  Aligned_cols=115  Identities=19%  Similarity=0.182  Sum_probs=74.2

Q ss_pred             CCCEEEEECCCCChhHHHHHH--------hcCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhh
Q 018352           31 PYVTVCDLYCGAGVDVDKWET--------ALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQE  101 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~--------~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~  101 (357)
                      ++.+|||-+||+|+++.....        ....+++|+|+++.++..|+.++.-.+.. ....+..+|....+...    
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~----  121 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI----  121 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT----
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc----
Confidence            466899999999998877665        24568999999999999998765332211 12457888876644311    


Q ss_pred             cCCcccEEEEccchhhc------cC-----------CHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          102 KANQADLVCCFQHLQMC------FE-----------TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~------fe-----------s~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ....||+|+++--+-..      ..           ....--.++..+.+.|++||++.+.+|++
T Consensus       122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~  186 (311)
T PF02384_consen  122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG  186 (311)
T ss_dssp             ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred             cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence            24789999996532221      00           00112248899999999999999888875

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.16  E-value=2.7e-06  Score=75.45  Aligned_cols=116  Identities=18%  Similarity=0.121  Sum_probs=71.3

Q ss_pred             CCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh----hhcCC
Q 018352           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM----QEKAN  104 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l----~~~~~  104 (357)
                      .+.+||||||+.|+.+..+....  ..+++|+|+.+.         ..   ...+.++++|+........+    ....+
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~---~~~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DP---LQNVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS----TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------cc---ccceeeeecccchhhHHHhhhhhcccccc
Confidence            34899999999999998887776  579999999976         10   11466677777553222222    11236


Q ss_pred             cccEEEEccchhhc-------cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc---hHHHHHHHH
Q 018352          105 QADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK  158 (357)
Q Consensus       105 ~FDlV~~~~~lh~~-------fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~---~~i~~~~~~  158 (357)
                      .||+|+|-.+....       +.+.+-....+.-+.+.|+|||.|++-+...   ..+...++.
T Consensus        91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~  154 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKR  154 (181)
T ss_dssp             SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHH
T ss_pred             CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHh
Confidence            89999997633221       1122334455666668899999999875443   455555543

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.16  E-value=3.5e-06  Score=82.90  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHc---CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc
Q 018352           18 EFAKTALIKIY---SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (357)
Q Consensus        18 nwvks~Li~~~---~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~   94 (357)
                      .|++...+..+   +.++..++|+|||-|+.......-+...++|+|.++..+..+..............|+.+|+...+
T Consensus        94 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~  173 (364)
T KOG1269|consen   94 FWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP  173 (364)
T ss_pred             HHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC
Confidence            36665444333   457778999999999888887777878999999999999888776654433335566888988888


Q ss_pred             hhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        95 ~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +      .++.||.|.+..+..|    ..+...+++++.++++|||+++.-
T Consensus       174 f------edn~fd~v~~ld~~~~----~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  174 F------EDNTFDGVRFLEVVCH----APDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             C------CccccCcEEEEeeccc----CCcHHHHHHHHhcccCCCceEEeH
Confidence            8      6799999998887666    345778899999999999999865

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.09  E-value=2e-05  Score=75.53  Aligned_cols=80  Identities=16%  Similarity=0.060  Sum_probs=61.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++..+||++||.|+++..++...  .++|+|+|.+++|++.|+++...   ..++.++++|....  ...+.....++|
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l--~~~l~~~~~~vD   92 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNL--KEVLAEGLGKVD   92 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHH--HHHHHcCCCccC
Confidence            467899999999999999998873  47999999999999999998764   23789999987653  222221113799


Q ss_pred             EEEEccc
Q 018352          108 LVCCFQH  114 (357)
Q Consensus       108 lV~~~~~  114 (357)
                      .|++..+
T Consensus        93 gIl~DLG   99 (296)
T PRK00050         93 GILLDLG   99 (296)
T ss_pred             EEEECCC
Confidence            9988654

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.09  E-value=9.7e-05  Score=65.99  Aligned_cols=113  Identities=15%  Similarity=0.062  Sum_probs=83.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      .+.++||+-+|+|......+.++..+++.||.+..++...++..+..+...++.++..|+.  .+...+. ..++||+|.
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~--~~L~~~~-~~~~FDlVf  119 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL--RALKQLG-TREPFDLVF  119 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--HHHHhcC-CCCcccEEE
Confidence            5789999999999988888888999999999999999999999887765568889999986  2211121 123599999


Q ss_pred             EccchhhccCCHHHHHHHHHH--HHhcccCCcEEEEEeCCc
Q 018352          111 CFQHLQMCFETEERARRLLQN--VSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~--i~~~LkpGG~fi~t~pd~  149 (357)
                      .---++.-+   -+....+..  -...|+|+|.+++-....
T Consensus       120 lDPPy~~~l---~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         120 LDPPYAKGL---LDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             eCCCCccch---hhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            877665311   111222222  457899999999885543

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.08  E-value=9.3e-06  Score=71.17  Aligned_cols=75  Identities=20%  Similarity=0.239  Sum_probs=52.8

Q ss_pred             EEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEc
Q 018352           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (357)
Q Consensus        34 ~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~  112 (357)
                      .|+|+.||-||++..+++. +.+|+++|+++..++.|+...+-.+...+++|+++|..+..  ..+.. ...||+|.+.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~--~~~~~-~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL--KRLKS-NKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG--GGB-------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH--hhccc-cccccEEEEC
Confidence            6999999999999999776 56899999999999999999887666668999999986521  11111 1128999873

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.08  E-value=3.6e-06  Score=84.70  Aligned_cols=113  Identities=21%  Similarity=0.218  Sum_probs=71.1

Q ss_pred             CEEEEECCCCChhHHHHHHhcCCeEE--EEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           33 VTVCDLYCGAGVDVDKWETALIANYI--GIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~~~v~--GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ..+||+|||.|.+...++..++..+.  --|..+..++.|-+|-    .  .+.+-..-....++      +++.||+|-
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG----v--pa~~~~~~s~rLPf------p~~~fDmvH  186 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG----V--PAMIGVLGSQRLPF------PSNAFDMVH  186 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC----c--chhhhhhccccccC------Cccchhhhh
Confidence            47999999999988888776652221  2244555666665552    0  11111111123444      689999999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc--------hHHHHHHHHhH
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS--------STIWAKYQKNV  160 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~--------~~i~~~~~~~~  160 (357)
                      |..++.. +...  -..+|-++-|+|+|||+|+.+.|-.        ..+++.+.+..
T Consensus       187 csrc~i~-W~~~--~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~  241 (506)
T PF03141_consen  187 CSRCLIP-WHPN--DGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLA  241 (506)
T ss_pred             ccccccc-chhc--ccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHH
Confidence            9887554 2111  2358899999999999999996543        25555555433

; GO: 0008168 methyltransferase activity

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.07  E-value=3.6e-05  Score=75.81  Aligned_cols=111  Identities=13%  Similarity=0.129  Sum_probs=71.8

Q ss_pred             CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-------c---
Q 018352           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-------K---  102 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-------~---  102 (357)
                      .+|||+|||+|..+..++.. ..+|+|+|++++|++.|+++.+.++.. +++|+.+|+... + .....       .   
T Consensus       199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~-~-~~~~~~~~~~~~~~~~  274 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEF-T-QAMNGVREFRRLKGID  274 (353)
T ss_pred             CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHH-H-HHHhhccccccccccc
Confidence            47999999999888865544 469999999999999999998776543 689999998542 1 11000       0   


Q ss_pred             --CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352          103 --ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (357)
Q Consensus       103 --~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~  157 (357)
                        ...||+|+..-. ..-+     ...+++.+.+   |++ ++...+|...+.+-+.
T Consensus       275 ~~~~~~d~v~lDPP-R~G~-----~~~~l~~l~~---~~~-ivYvsC~p~tlaRDl~  321 (353)
T TIGR02143       275 LKSYNCSTIFVDPP-RAGL-----DPDTCKLVQA---YER-ILYISCNPETLKANLE  321 (353)
T ss_pred             cccCCCCEEEECCC-CCCC-----cHHHHHHHHc---CCc-EEEEEcCHHHHHHHHH
Confidence              124899977543 2111     2234454444   555 4445566666655543

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.05  E-value=6.5e-05  Score=80.40  Aligned_cols=117  Identities=16%  Similarity=0.104  Sum_probs=83.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-------------------------------------------cCCeEEEEeCChHH
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-------------------------------------------LIANYIGIDVATSG   66 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-------------------------------------------~~~~v~GiDiS~~~   66 (357)
                      .++..++|-+||+|..+...+..                                           ...+++|+|+++.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            45789999999999888655431                                           01269999999999


Q ss_pred             HHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhccc---CCcEEE
Q 018352           67 IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLK---PGGYFL  143 (357)
Q Consensus        67 l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~Lk---pGG~fi  143 (357)
                      ++.|+++....+....+.|.++|+.......    ..++||+|+++--..--.....+...+.+.+.+.|+   +|+...
T Consensus       269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~  344 (702)
T PRK11783        269 IQAARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA  344 (702)
T ss_pred             HHHHHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence            9999999988766556899999987754311    235799999986433323334445555455444444   899998


Q ss_pred             EEeCCch
Q 018352          144 GITPDSS  150 (357)
Q Consensus       144 ~t~pd~~  150 (357)
                      +.+++..
T Consensus       345 llt~~~~  351 (702)
T PRK11783        345 LFSSSPE  351 (702)
T ss_pred             EEeCCHH
Confidence            8888754

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.05  E-value=2.2e-05  Score=77.82  Aligned_cols=106  Identities=11%  Similarity=0.184  Sum_probs=80.6

Q ss_pred             CEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           33 VTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      .+|||+.||+|.....++..  +..+|+++|+++.+++.++++.+.++.. ++++++.|+...-     .....+||+|.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l-----~~~~~~fDvId  119 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVL-----RYRNRKFHVID  119 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHH-----HHhCCCCCEEE
Confidence            58999999999888888776  5689999999999999999998776432 5778888875421     11235799997


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      .--     |.+   ...++..+.+.+++||++.+|.-|...+
T Consensus       120 lDP-----fGs---~~~fld~al~~~~~~glL~vTaTD~~~L  153 (374)
T TIGR00308       120 IDP-----FGT---PAPFVDSAIQASAERGLLLVTATDTSAL  153 (374)
T ss_pred             eCC-----CCC---cHHHHHHHHHhcccCCEEEEEecccHHh
Confidence            654     222   2357888889999999999996665443

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK00536 speE spermidine synthase; Provisional

Probab=98.04  E-value=2.9e-05  Score=73.20  Aligned_cols=97  Identities=10%  Similarity=0.021  Sum_probs=72.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcC---CCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +...+||=||.|.|+.++..++.+. +++.+||++++++.|++-.....   ...+++++..      +   .....++|
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~------~---~~~~~~~f  140 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ------L---LDLDIKKY  140 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh------h---hhccCCcC
Confidence            3568999999999999999998874 99999999999999999554321   1224555431      1   01123689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|++-.    .+ +    ..+.+.++++|+|||+++..
T Consensus       141 DVIIvDs----~~-~----~~fy~~~~~~L~~~Gi~v~Q  170 (262)
T PRK00536        141 DLIICLQ----EP-D----IHKIDGLKRMLKEDGVFISV  170 (262)
T ss_pred             CEEEEcC----CC-C----hHHHHHHHHhcCCCcEEEEC
Confidence            9999764    23 2    46789999999999999986

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.03  E-value=3.6e-05  Score=79.63  Aligned_cols=117  Identities=14%  Similarity=0.102  Sum_probs=73.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHhc---------CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh
Q 018352           31 PYVTVCDLYCGAGVDVDKWETAL---------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~---------~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~  101 (357)
                      ...+|||.|||+|+++......-         ..+++|+|+++.++..|+.++.... ...+.....|.....+.. ...
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~~~~i~~~d~l~~~~~~-~~~  108 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LLEINVINFNSLSYVLLN-IES  108 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CCCceeeecccccccccc-ccc
Confidence            35699999999999887765531         1478999999999999998876543 123444555543322110 001


Q ss_pred             cCCcccEEEEccchhhc-cCCHH------------------------------H-----------HHHH-HHHHHhcccC
Q 018352          102 KANQADLVCCFQHLQMC-FETEE------------------------------R-----------ARRL-LQNVSSLLKP  138 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~-fes~~------------------------------~-----------~~~~-L~~i~~~Lkp  138 (357)
                      ..+.||+|+++--.--. ....+                              .           .-.+ ++.+.++|++
T Consensus       109 ~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~  188 (524)
T TIGR02987       109 YLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANK  188 (524)
T ss_pred             ccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCC
Confidence            23579999987532210 00000                              0           0113 3567899999


Q ss_pred             CcEEEEEeCCc
Q 018352          139 GGYFLGITPDS  149 (357)
Q Consensus       139 GG~fi~t~pd~  149 (357)
                      ||++.+.+|++
T Consensus       189 ~G~~~~I~P~s  199 (524)
T TIGR02987       189 NGYVSIISPAS  199 (524)
T ss_pred             CCEEEEEEChH
Confidence            99999998885

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.03  E-value=6.9e-05  Score=68.56  Aligned_cols=107  Identities=10%  Similarity=0.090  Sum_probs=82.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCccc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FD  107 (357)
                      ...++||||.=||..+..|+.+  ..++|+++|++++..+.+.+.++..+....++|+++++.. .+...++. ..++||
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e-sLd~l~~~~~~~tfD  151 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE-SLDELLADGESGTFD  151 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh-hHHHHHhcCCCCcee
Confidence            3579999999999888777766  5679999999999999998877766666689999998765 23222221 358999


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .|+.-.       ..........++.++||+||++++.
T Consensus       152 faFvDa-------dK~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  152 FAFVDA-------DKDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             EEEEcc-------chHHHHHHHHHHHhhcccccEEEEe
Confidence            996543       2344457889999999999999877

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.00  E-value=0.0001  Score=67.20  Aligned_cols=109  Identities=21%  Similarity=0.227  Sum_probs=64.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHH-hcCCeEEEEeCChHHHHHHHHHhHh-------cC-CCceeEEEEcCCCCCchhhhh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWEN-------QR-KNFIAEFFEADPCAENFETQM   99 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~-~~~~~v~GiDiS~~~l~~A~~r~~~-------~~-~~~~v~f~~~D~~~~~~~~~l   99 (357)
                      +.++...+|||||.|..+...+. .+..+.+||++.+...+.|+...+.       .+ ...++++..+|..+.++...+
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~  119 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI  119 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence            45789999999999976655443 4777799999999988877653322       11 134678889998775542211


Q ss_pred             hhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                         -...|+|+++..   +|  .++....|.+....||+|-++|-+
T Consensus       120 ---~s~AdvVf~Nn~---~F--~~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  120 ---WSDADVVFVNNT---CF--DPDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             ---GHC-SEEEE--T---TT---HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             ---hcCCCEEEEecc---cc--CHHHHHHHHHHHhcCCCCCEEEEC
Confidence               135899998763   46  334556678888889998877644

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=8.7e-05  Score=65.61  Aligned_cols=116  Identities=18%  Similarity=0.252  Sum_probs=79.7

Q ss_pred             CCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ..-+||||||+|..+..+.+.  +...+.++||++.+++...+..+.++.  ++..++.|+.+.     +  ..++.|++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~-----l--~~~~VDvL  114 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSG-----L--RNESVDVL  114 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhh-----h--ccCCccEE
Confidence            567999999999766666554  566899999999999988887776643  466778876542     2  23778887


Q ss_pred             EEccc---------------hhhc--cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc---hHHHHHH
Q 018352          110 CCFQH---------------LQMC--FETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKY  156 (357)
Q Consensus       110 ~~~~~---------------lh~~--fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~---~~i~~~~  156 (357)
                      +-+-.               .-|+  -...+-..+++..+-.+|.|.|.|+..+..+   .+|.+.+
T Consensus       115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l  181 (209)
T KOG3191|consen  115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKIL  181 (209)
T ss_pred             EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHH
Confidence            64321               1111  1123346778889999999999999886554   4455544

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.99  E-value=6.8e-05  Score=71.47  Aligned_cols=109  Identities=14%  Similarity=0.126  Sum_probs=79.4

Q ss_pred             CEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcC--C-CceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR--K-NFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~--~-~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .+||-||-|.|+.+...++.. ..+++.+||++..++.|++.+....  . ..+++.+..|...  +   +.....+||+
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~--~---v~~~~~~fDv  152 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE--F---LRDCEEKFDV  152 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH--H---HHhCCCcCCE
Confidence            599999999999999998874 7899999999999999999876532  1 2467888888644  1   2223358999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |++-..=.-.-...=--..+++.++++|+++|+++..+
T Consensus       153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            98754211000000013579999999999999999883

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.95  E-value=2.5e-05  Score=73.12  Aligned_cols=112  Identities=13%  Similarity=0.072  Sum_probs=76.4

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcC---CCceeEEEEcCCCCCchhhhhhhcCC-
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN-  104 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~l~~~~~-  104 (357)
                      +...+||=||-|.|+.+..+.+.. ..+++++||++..++.|++-+....   ...+++++..|+..  +   +..... 
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~--~---l~~~~~~  149 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK--F---LKETQEE  149 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH--H---HHTSSST
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH--H---HHhccCC
Confidence            457899999999998888887765 6799999999999999998765421   13478889998744  2   222234 


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +||+|++-..-.......--.+.+++.+.++|+|||+++...
T Consensus       150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            899998733211000000013578999999999999999874

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.93  E-value=8.4e-05  Score=70.70  Aligned_cols=119  Identities=16%  Similarity=0.133  Sum_probs=77.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ...+|||+|||.|..+..+...  ...+++++|.|+.|++.++...+.......... ..+......      .....|+
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~------~~~~~DL  105 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRVLYRDFL------PFPPDDL  105 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhhhhcccc------cCCCCcE
Confidence            3469999999999544332221  466899999999999999887654321101111 111111000      1234499


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE---eCCchHHHHHHHHhH
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV  160 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t---~pd~~~i~~~~~~~~  160 (357)
                      |++.++|.- +.+ +....+++++.+.+.+  +++++   +|.....+...++.+
T Consensus       106 vi~s~~L~E-L~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l  156 (274)
T PF09243_consen  106 VIASYVLNE-LPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQL  156 (274)
T ss_pred             EEEehhhhc-CCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHH
Confidence            999999887 445 7778899999888876  77777   556666666666543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.92  E-value=8.6e-05  Score=72.36  Aligned_cols=106  Identities=17%  Similarity=0.074  Sum_probs=85.7

Q ss_pred             HHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      .+...+|.+|||+=||-|-++...+..+...|+++|+++.+++..++.++-++....+..+++|+.....      ..+.
T Consensus       183 a~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~------~~~~  256 (341)
T COG2520         183 AELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP------ELGV  256 (341)
T ss_pred             HhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh------cccc
Confidence            3445569999999999999999988887766999999999999999999888776678999999877544      2378


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ||-|++...        ..+.+++..+.+++++||.+..-
T Consensus       257 aDrIim~~p--------~~a~~fl~~A~~~~k~~g~iHyy  288 (341)
T COG2520         257 ADRIIMGLP--------KSAHEFLPLALELLKDGGIIHYY  288 (341)
T ss_pred             CCEEEeCCC--------CcchhhHHHHHHHhhcCcEEEEE
Confidence            999987651        13456777888889999987765

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=5e-05  Score=68.57  Aligned_cols=103  Identities=18%  Similarity=0.115  Sum_probs=74.2

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHhcC---------CCceeEEEEcCCCCCc
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQR---------KNFIAEFFEADPCAEN   94 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~~~---------~~~~v~f~~~D~~~~~   94 (357)
                      ..+.|+.+.||+|.|+|-.+.-+...   .....+|||.-++.++.+++.+...-         ...+..++++|+....
T Consensus        78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~  157 (237)
T KOG1661|consen   78 DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY  157 (237)
T ss_pred             HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence            34578999999999999655544422   34455999999999999998775421         1225678899987643


Q ss_pred             hhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        95 ~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      -      ...+||.|.|..+          +.+..+++...|++||.+++-
T Consensus       158 ~------e~a~YDaIhvGAa----------a~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  158 A------EQAPYDAIHVGAA----------ASELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             C------ccCCcceEEEccC----------ccccHHHHHHhhccCCeEEEe
Confidence            3      4689999988752          233456677789999998876

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.90  E-value=1.5e-05  Score=73.05  Aligned_cols=113  Identities=12%  Similarity=0.068  Sum_probs=80.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcC-CCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-KNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~-~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .+.+|||.|.|-|-.+...+..+..+|+-++-++..|+.|.-+--+.+ ....++.+.+|+.+.  ...+  .+.+||+|
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~--V~~~--~D~sfDaI  209 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV--VKDF--DDESFDAI  209 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH--HhcC--CccccceE
Confidence            589999999999988888888888899999999999998865421111 122578899998652  1112  56899999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +---. ..+...+--..++.++++|+|||||.++--+-+
T Consensus       210 iHDPP-RfS~AgeLYseefY~El~RiLkrgGrlFHYvG~  247 (287)
T COG2521         210 IHDPP-RFSLAGELYSEEFYRELYRILKRGGRLFHYVGN  247 (287)
T ss_pred             eeCCC-ccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCC
Confidence            74221 112223334678999999999999999855433

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=0.00026  Score=69.81  Aligned_cols=123  Identities=17%  Similarity=0.145  Sum_probs=85.2

Q ss_pred             HHHHHHcCC--CCCEEEEECCCCChhHHHHHHhc---CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352           22 TALIKIYSH--PYVTVCDLYCGAGVDVDKWETAL---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (357)
Q Consensus        22 s~Li~~~~~--~~~~VLDlGCG~G~~l~k~~~~~---~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~   96 (357)
                      |++....+.  ++.+|||+|++.|+=+..++..-   ...|+++|+++.-++..+++.+..+.. ++..+..|.....-.
T Consensus       145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~  223 (355)
T COG0144         145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAEL  223 (355)
T ss_pred             HHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccccccc
Confidence            455555544  78999999999999777776652   345799999999999999988876554 367777776543211


Q ss_pred             hhhhhcCCcccEEEEc------cchh------hccCCH-------HHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           97 TQMQEKANQADLVCCF------QHLQ------MCFETE-------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        97 ~~l~~~~~~FDlV~~~------~~lh------~~fes~-------~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                        .. ..++||.|++-      .+++      |.+ +.       ....++|.++.+.|||||+++-+|++-
T Consensus       224 --~~-~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~-~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         224 --LP-GGEKFDRILLDAPCSGTGVIRRDPDVKWRR-TPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             --cc-ccCcCcEEEECCCCCCCcccccCccccccC-CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence              00 12369999752      1221      211 11       224679999999999999999887664

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=0.00022  Score=64.62  Aligned_cols=119  Identities=17%  Similarity=0.127  Sum_probs=81.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+|+||||-.|+.+....+.  ....|+|+|+.+--            ...++.++++|++..+....+..  ...
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~  110 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGA  110 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCCC
Confidence            457899999999999888776665  23459999998632            12258999999998776544432  234


Q ss_pred             cccEEEEccch--------hhccCCHHHHHHHHHHHHhcccCCcEEEEEe---CCchHHHHHHHHhH
Q 018352          105 QADLVCCFQHL--------QMCFETEERARRLLQNVSSLLKPGGYFLGIT---PDSSTIWAKYQKNV  160 (357)
Q Consensus       105 ~FDlV~~~~~l--------h~~fes~~~~~~~L~~i~~~LkpGG~fi~t~---pd~~~i~~~~~~~~  160 (357)
                      .+|+|+|-.+-        ++ ..+..-...++.-+..+|+|||.|++-.   -+.+.+++.+++..
T Consensus       111 ~~DvV~sD~ap~~~g~~~~Dh-~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F  176 (205)
T COG0293         111 PVDVVLSDMAPNTSGNRSVDH-ARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLF  176 (205)
T ss_pred             CcceEEecCCCCcCCCccccH-HHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhh
Confidence            57999975432        22 1133445567777888999999999774   44466666666543

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.82  E-value=0.00012  Score=68.91  Aligned_cols=110  Identities=16%  Similarity=0.173  Sum_probs=71.3

Q ss_pred             CEEEEECCC--CChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh--hcCCcc
Q 018352           33 VTVCDLYCG--AGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA  106 (357)
Q Consensus        33 ~~VLDlGCG--~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~--~~~~~F  106 (357)
                      ...||||||  +-+.+...++.  +.++|+-+|+.+..+..++..+..... -...++++|+....-  .+.  ...+-+
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~--iL~~p~~~~~l  146 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEA--ILAHPEVRGLL  146 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHH--HHCSHHHHCC-
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHH--HhcCHHHHhcC
Confidence            479999999  34477777664  678999999999999999998876531 148899999987431  111  011223


Q ss_pred             c-----EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          107 D-----LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       107 D-----lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |     .|++...+|+ +.+.++...+++.+...|.||.++.++.
T Consensus       147 D~~rPVavll~~vLh~-v~D~~dp~~iv~~l~d~lapGS~L~ish  190 (267)
T PF04672_consen  147 DFDRPVAVLLVAVLHF-VPDDDDPAGIVARLRDALAPGSYLAISH  190 (267)
T ss_dssp             -TTS--EEEECT-GGG-S-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred             CCCCCeeeeeeeeecc-CCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence            3     4566778998 6677789999999999999999999993

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.81  E-value=0.00012  Score=68.48  Aligned_cols=76  Identities=13%  Similarity=0.054  Sum_probs=64.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      +++...||++|-|||..+.+++..+. +|+++++++.|+.+..+|.++........++++|....++        ..||+
T Consensus        56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--------P~fd~  126 (315)
T KOG0820|consen   56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--------PRFDG  126 (315)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--------cccce
Confidence            45889999999999988888887765 9999999999999999999876655578899999987655        46898


Q ss_pred             EEEcc
Q 018352          109 VCCFQ  113 (357)
Q Consensus       109 V~~~~  113 (357)
                      ++++.
T Consensus       127 cVsNl  131 (315)
T KOG0820|consen  127 CVSNL  131 (315)
T ss_pred             eeccC
Confidence            88744

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.80  E-value=0.00028  Score=63.23  Aligned_cols=116  Identities=17%  Similarity=0.171  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHcCCCCC-EEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch
Q 018352           18 EFAKTALIKIYSHPYV-TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (357)
Q Consensus        18 nwvks~Li~~~~~~~~-~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~   95 (357)
                      ..+.|..+..+++... +++|||+|.|--..-++-. +..+++.+|....-+.-.+.-....+.. ++++++..+.. ..
T Consensus        34 Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~  111 (184)
T PF02527_consen   34 HILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PE  111 (184)
T ss_dssp             HHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TT
T ss_pred             HHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cc
Confidence            3445555666666544 8999999999555444443 5568999999998777766666555443 68889888755 11


Q ss_pred             hhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE-eCCc
Q 018352           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDS  149 (357)
Q Consensus        96 ~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t-~pd~  149 (357)
                            ...+||+|++-.     +.+   ...+++-+...|++||+++.. .++.
T Consensus       112 ------~~~~fd~v~aRA-----v~~---l~~l~~~~~~~l~~~G~~l~~KG~~~  152 (184)
T PF02527_consen  112 ------YRESFDVVTARA-----VAP---LDKLLELARPLLKPGGRLLAYKGPDA  152 (184)
T ss_dssp             ------TTT-EEEEEEES-----SSS---HHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred             ------cCCCccEEEeeh-----hcC---HHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence                  358999999876     333   446788889999999999877 4444

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.80  E-value=0.00011  Score=72.75  Aligned_cols=110  Identities=11%  Similarity=0.084  Sum_probs=71.7

Q ss_pred             CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc----------
Q 018352           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK----------  102 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~----------  102 (357)
                      .+|||++||+|..+..+++ +..+|+|+|+|+.|++.|+++.+.++.. +++|+.+|+... + ..+...          
T Consensus       208 ~~vLDl~~G~G~~sl~la~-~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~-l-~~~~~~~~~~~~~~~~  283 (362)
T PRK05031        208 GDLLELYCGNGNFTLALAR-NFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEF-T-QAMNGVREFNRLKGID  283 (362)
T ss_pred             CeEEEEeccccHHHHHHHh-hCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHH-H-HHHhhccccccccccc
Confidence            5799999999988886654 4569999999999999999988776543 789999998542 1 111100          


Q ss_pred             --CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352          103 --ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus       103 --~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                        ..+||+|+..--- .     .-...+++.+.+   |+++ +...+|...+.+-+
T Consensus       284 ~~~~~~D~v~lDPPR-~-----G~~~~~l~~l~~---~~~i-vyvSC~p~tlarDl  329 (362)
T PRK05031        284 LKSYNFSTIFVDPPR-A-----GLDDETLKLVQA---YERI-LYISCNPETLCENL  329 (362)
T ss_pred             ccCCCCCEEEECCCC-C-----CCcHHHHHHHHc---cCCE-EEEEeCHHHHHHHH
Confidence              1258999875431 1     012334444444   5554 44455556655444

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.74  E-value=0.00047  Score=65.22  Aligned_cols=120  Identities=16%  Similarity=0.152  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHcCC-----CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc--CCCc-------
Q 018352           16 LYEFAKTALIKIYSH-----PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--RKNF-------   81 (357)
Q Consensus        16 ~~nwvks~Li~~~~~-----~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~--~~~~-------   81 (357)
                      ...+|.+.|-..+..     ...+||-=|||.|+.+..++..++ .+.|.|.|--|+-..+-.+...  ...+       
T Consensus        36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~  114 (270)
T PF07942_consen   36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVH  114 (270)
T ss_pred             HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEeccee
Confidence            456677776665542     357899999999999999988887 8999999999976554432210  0001       


Q ss_pred             ------------------------------eeEEEEcCCCCCchhhhhhhc--CCcccEEEEccchhhccCCHHHHHHHH
Q 018352           82 ------------------------------IAEFFEADPCAENFETQMQEK--ANQADLVCCFQHLQMCFETEERARRLL  129 (357)
Q Consensus        82 ------------------------------~v~f~~~D~~~~~~~~~l~~~--~~~FDlV~~~~~lh~~fes~~~~~~~L  129 (357)
                                                    +.....+|..+.     ....  .++||+|++.|    ...+....-..|
T Consensus       115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~-----y~~~~~~~~~d~VvT~F----FIDTA~Ni~~Yi  185 (270)
T PF07942_consen  115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEV-----YGPDENKGSFDVVVTCF----FIDTAENIIEYI  185 (270)
T ss_pred             cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEe-----cCCcccCCcccEEEEEE----EeechHHHHHHH
Confidence                                          112222222211     1111  37899998777    345567788999


Q ss_pred             HHHHhcccCCcEEEEE
Q 018352          130 QNVSSLLKPGGYFLGI  145 (357)
Q Consensus       130 ~~i~~~LkpGG~fi~t  145 (357)
                      +.|.++|||||+.|=.
T Consensus       186 ~tI~~lLkpgG~WIN~  201 (270)
T PF07942_consen  186 ETIEHLLKPGGYWINF  201 (270)
T ss_pred             HHHHHHhccCCEEEec
Confidence            9999999999987744

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.73  E-value=0.00062  Score=58.07  Aligned_cols=106  Identities=21%  Similarity=0.241  Sum_probs=68.7

Q ss_pred             CCCCEEEEECCCCChhHHHHHH-----hcCCeEEEEeCChHHHHHHHHHhHhcC--CCceeEEEEcCCCCCchhhhhhhc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWET-----ALIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~-----~~~~~v~GiDiS~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      .+..+|+|+|||.|.....++.     ....+|+|+|.++..++.|.++.+...  ...+..+..++.....       .
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~   96 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-------S   96 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-------c
Confidence            4578999999999976666665     456699999999999999999887654  2234555555543321       1


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~  151 (357)
                      ....++++   ++|- ..+  -...+|+...+   ++-.++...|....
T Consensus        97 ~~~~~~~v---gLHa-CG~--Ls~~~l~~~~~---~~~~~l~~vpCCyh  136 (141)
T PF13679_consen   97 SDPPDILV---GLHA-CGD--LSDRALRLFIR---PNARFLVLVPCCYH  136 (141)
T ss_pred             cCCCeEEE---Eeec-ccc--hHHHHHHHHHH---cCCCEEEEcCCccc
Confidence            34566665   5665 222  22344554444   66677777777643

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.66  E-value=0.00085  Score=61.44  Aligned_cols=106  Identities=14%  Similarity=0.069  Sum_probs=75.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +.++.+||-||..+|........-  ..+.|++++.|+.+.+..-...+..   .|+--+..|+....-...   --+..
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~---lv~~V  144 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRM---LVEMV  144 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTT---TS--E
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhc---ccccc
Confidence            458899999999999888888775  3679999999997766554443332   167778899886443222   23589


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|.+--+      ..++++-++.|+...||+||.|++.+
T Consensus       145 DvI~~DVa------Qp~Qa~I~~~Na~~fLk~gG~~~i~i  178 (229)
T PF01269_consen  145 DVIFQDVA------QPDQARIAALNARHFLKPGGHLIISI  178 (229)
T ss_dssp             EEEEEE-S------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEecCC------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence            99987653      34578999999999999999999873

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.64  E-value=0.0013  Score=64.88  Aligned_cols=119  Identities=17%  Similarity=0.121  Sum_probs=86.5

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcC---------------------------------C-------eEEEEeCChHHHHH
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALI---------------------------------A-------NYIGIDVATSGIGE   69 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~---------------------------------~-------~v~GiDiS~~~l~~   69 (357)
                      .++..++|--||+|..+...+....                                 .       .++|+|+++.+|+.
T Consensus       190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~  269 (381)
T COG0116         190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG  269 (381)
T ss_pred             CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence            3567999999999988766544321                                 1       37899999999999


Q ss_pred             HHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHH----HHHHHHHHHHhcccCCcEEEEE
Q 018352           70 ARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEE----RARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        70 A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~----~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+.+.+..+....++|.++|+....-      +...+|+|+|+--.---+.+.+    -.+.+.+.+++.++--+.++++
T Consensus       270 Ak~NA~~AGv~d~I~f~~~d~~~l~~------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t  343 (381)
T COG0116         270 AKANARAAGVGDLIEFKQADATDLKE------PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHHHhcCCCceEEEEEcchhhCCC------CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            99999988877789999999976443      2268999999864222223332    2356667777888888899988


Q ss_pred             eCCchHHHH
Q 018352          146 TPDSSTIWA  154 (357)
Q Consensus       146 ~pd~~~i~~  154 (357)
                      +...-....
T Consensus       344 t~e~~~~~~  352 (381)
T COG0116         344 TSEDLLFCL  352 (381)
T ss_pred             ccHHHHHHH
Confidence            766544433

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.00031  Score=70.94  Aligned_cols=127  Identities=20%  Similarity=0.227  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc
Q 018352           15 RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (357)
Q Consensus        15 ~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~   94 (357)
                      +|..|+...+-.   .++.+|||+-||.|.+...++ .+..+|+|+|+++++++.|++.++.++.. +++|..+|+....
T Consensus       280 kl~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~  354 (432)
T COG2265         280 KLYETALEWLEL---AGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFT  354 (432)
T ss_pred             HHHHHHHHHHhh---cCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHh
Confidence            344555544321   356799999999998887775 46669999999999999999999888765 4999999986533


Q ss_pred             hhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (357)
Q Consensus        95 ~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~  157 (357)
                      .  ... ....+|+|+..--=-- .     .+.+++.+.+ ++|-. ++-..+|..++.+-+.
T Consensus       355 ~--~~~-~~~~~d~VvvDPPR~G-~-----~~~~lk~l~~-~~p~~-IvYVSCNP~TlaRDl~  406 (432)
T COG2265         355 P--AWW-EGYKPDVVVVDPPRAG-A-----DREVLKQLAK-LKPKR-IVYVSCNPATLARDLA  406 (432)
T ss_pred             h--hcc-ccCCCCEEEECCCCCC-C-----CHHHHHHHHh-cCCCc-EEEEeCCHHHHHHHHH
Confidence            2  111 2357899976431110 0     1234555544 44444 4445678777766554

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.55  E-value=0.00086  Score=62.90  Aligned_cols=112  Identities=15%  Similarity=0.147  Sum_probs=88.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +.|+.+||+-|.|.|+....++++  +.++++-+|+-+.--+.|.+.++..+...++++.+-|++...+..    +...+
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~----ks~~a  178 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI----KSLKA  178 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc----ccccc
Confidence            569999999999999888887775  678999999999999999999998888889999999999877632    46789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCc-EEEEEeCCchHHH
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDSSTIW  153 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG-~fi~t~pd~~~i~  153 (357)
                      |.|..-.-         .+-.++-.++..||-+| +|+..+|+-+.+-
T Consensus       179 DaVFLDlP---------aPw~AiPha~~~lk~~g~r~csFSPCIEQvq  217 (314)
T KOG2915|consen  179 DAVFLDLP---------APWEAIPHAAKILKDEGGRLCSFSPCIEQVQ  217 (314)
T ss_pred             ceEEEcCC---------ChhhhhhhhHHHhhhcCceEEeccHHHHHHH
Confidence            99965432         23334555666888766 7777788876654

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=0.0011  Score=62.31  Aligned_cols=78  Identities=12%  Similarity=0.031  Sum_probs=60.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||||+|.|..+..+++... +|+++++++.++...+++...   ..+++.+++|+...++...     .+++.
T Consensus        28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~---~~n~~vi~~DaLk~d~~~l-----~~~~~   98 (259)
T COG0030          28 ISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP---YDNLTVINGDALKFDFPSL-----AQPYK   98 (259)
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc---ccceEEEeCchhcCcchhh-----cCCCE
Confidence            34678999999999988888877665 799999999999999888752   2378999999998777210     16777


Q ss_pred             EEEccch
Q 018352          109 VCCFQHL  115 (357)
Q Consensus       109 V~~~~~l  115 (357)
                      |+++--.
T Consensus        99 vVaNlPY  105 (259)
T COG0030          99 VVANLPY  105 (259)
T ss_pred             EEEcCCC
Confidence            7775533

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.48  E-value=0.0015  Score=59.60  Aligned_cols=110  Identities=11%  Similarity=0.024  Sum_probs=74.1

Q ss_pred             EEEECCCCChhHHHHHHhcC-CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEcc
Q 018352           35 VCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (357)
Q Consensus        35 VLDlGCG~G~~l~k~~~~~~-~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~  113 (357)
                      |.||||-.|.....+.+.+. .+++++|+++..++.|++..+..+...++++..+|... .+.     +....|+|++..
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~-----~~e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLK-----PGEDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G-------GGG---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccC-----CCCCCCEEEEec
Confidence            68999999987777777754 57999999999999999999887767789999999755 221     123378887765


Q ss_pred             chhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352          114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus       114 ~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                          |  .-.....+|.+....++..-.||..-.+....++++
T Consensus        75 ----M--GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~  111 (205)
T PF04816_consen   75 ----M--GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRW  111 (205)
T ss_dssp             ----E---HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHH
T ss_pred             ----C--CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHH
Confidence                1  234577788888888877777877755554444443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.47  E-value=0.0005  Score=65.69  Aligned_cols=115  Identities=18%  Similarity=0.200  Sum_probs=79.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|+|.|+=+..++..  ..+.+++.|++..-+...+.+.+..+. .++.....|.......  .  ....||
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~--~--~~~~fd  158 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPK--K--PESKFD  158 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHH--H--HTTTEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeecccccccc--c--cccccc
Confidence            36889999999999987777665  357999999999999999888876543 2556666665442110  1  234699


Q ss_pred             EEEEc----c--chh------hccC--C----HHHHHHHHHHHHhcc----cCCcEEEEEeCCc
Q 018352          108 LVCCF----Q--HLQ------MCFE--T----EERARRLLQNVSSLL----KPGGYFLGITPDS  149 (357)
Q Consensus       108 lV~~~----~--~lh------~~fe--s----~~~~~~~L~~i~~~L----kpGG~fi~t~pd~  149 (357)
                      .|++-    .  .+.      |...  .    ....+++|+++.+.+    ||||+++-+|+.-
T Consensus       159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~  222 (283)
T PF01189_consen  159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL  222 (283)
T ss_dssp             EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred             hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence            99851    1  111      1110  0    122467999999999    9999999887664

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.35  E-value=0.0025  Score=60.49  Aligned_cols=108  Identities=16%  Similarity=0.096  Sum_probs=63.7

Q ss_pred             CCEEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhH-hcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           32 YVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~-~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ..+|+=||||.=-.+.-++..   ....++++|+++++++.|++..+ ..+...++.|+.+|......      .-..||
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~------dl~~~D  194 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY------DLKEYD  194 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G------G----S
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc------ccccCC
Confidence            359999999976555444432   24579999999999999998776 22334478999999865433      236899


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +|+.......   +.+...+++.++.+.++||..++.-.-+
T Consensus       195 vV~lAalVg~---~~e~K~~Il~~l~~~m~~ga~l~~Rsa~  232 (276)
T PF03059_consen  195 VVFLAALVGM---DAEPKEEILEHLAKHMAPGARLVVRSAH  232 (276)
T ss_dssp             EEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred             EEEEhhhccc---ccchHHHHHHHHHhhCCCCcEEEEecch
Confidence            9976552221   4456778999999999999988877444

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.32  E-value=0.0015  Score=63.66  Aligned_cols=94  Identities=16%  Similarity=0.073  Sum_probs=64.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.++|||||++||.+..+.+.+. +|+|||.++-    + .....   ..++.....|.....-      ..+.+|.
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l----~-~~L~~---~~~V~h~~~d~fr~~p------~~~~vDw  273 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPM----A-QSLMD---TGQVEHLRADGFKFRP------PRKNVDW  273 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhc----C-HhhhC---CCCEEEEeccCcccCC------CCCCCCE
Confidence            35789999999999999999988877 9999996642    1 11222   2268888888765321      1478999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCC--cEEEEE
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI  145 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpG--G~fi~t  145 (357)
                      |+|-.+        +++.++.+-+.+.|..|  ..+|++
T Consensus       274 vVcDmv--------e~P~rva~lm~~Wl~~g~cr~aIfn  304 (357)
T PRK11760        274 LVCDMV--------EKPARVAELMAQWLVNGWCREAIFN  304 (357)
T ss_pred             EEEecc--------cCHHHHHHHHHHHHhcCcccEEEEE
Confidence            998762        23445566666777655  355555

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.31  E-value=0.00099  Score=65.64  Aligned_cols=113  Identities=17%  Similarity=0.228  Sum_probs=67.2

Q ss_pred             CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc--------hhh--hhhhc
Q 018352           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--------FET--QMQEK  102 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~--------~~~--~l~~~  102 (357)
                      .+|||+.||.|.++..+ .....+|+|+|+++++++.|++.++.++.. +++|+.+++....        +..  .+...
T Consensus       198 ~~vlDlycG~G~fsl~l-a~~~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~  275 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPL-AKKAKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAKALAKAREFNRLKGIDLK  275 (352)
T ss_dssp             TEEEEES-TTTCCHHHH-HCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred             CcEEEEeecCCHHHHHH-HhhCCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence            48999999999777776 455679999999999999999999877653 7999988764311        100  00012


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~  157 (357)
                      ...+|+|+.--.=-- . +    ..+++.+.+   + .+++-..+|...+.+-+.
T Consensus       276 ~~~~d~vilDPPR~G-~-~----~~~~~~~~~---~-~~ivYvSCnP~tlaRDl~  320 (352)
T PF05958_consen  276 SFKFDAVILDPPRAG-L-D----EKVIELIKK---L-KRIVYVSCNPATLARDLK  320 (352)
T ss_dssp             CTTESEEEE---TT--S-C----HHHHHHHHH---S-SEEEEEES-HHHHHHHHH
T ss_pred             hcCCCEEEEcCCCCC-c-h----HHHHHHHhc---C-CeEEEEECCHHHHHHHHH
Confidence            346899875321100 1 1    122333332   2 378888899888876664

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.30  E-value=0.0021  Score=61.63  Aligned_cols=99  Identities=12%  Similarity=0.088  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHcC--CCCCEEEEECCCCChhHHHHH-HhcCCeEEEEeCChHHHHHHHHHhHhc-CCCceeEEEEcCCCCC
Q 018352           18 EFAKTALIKIYS--HPYVTVCDLYCGAGVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAE   93 (357)
Q Consensus        18 nwvks~Li~~~~--~~~~~VLDlGCG~G~~l~k~~-~~~~~~v~GiDiS~~~l~~A~~r~~~~-~~~~~v~f~~~D~~~~   93 (357)
                      .|+...|-....  +...++||||||....--.+. +...-+++|+||++.+++.|++..+.+ .+..+++++...-...
T Consensus        87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~  166 (299)
T PF05971_consen   87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDN  166 (299)
T ss_dssp             HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-S
T ss_pred             HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccc
Confidence            677765543221  125689999999874322222 223459999999999999999999887 6666788776543222


Q ss_pred             chhhhhhhcCCcccEEEEccchhh
Q 018352           94 NFETQMQEKANQADLVCCFQHLQM  117 (357)
Q Consensus        94 ~~~~~l~~~~~~FDlV~~~~~lh~  117 (357)
                       +...+......||+.+|+--+|-
T Consensus       167 -i~~~i~~~~e~~dftmCNPPFy~  189 (299)
T PF05971_consen  167 -IFDGIIQPNERFDFTMCNPPFYS  189 (299)
T ss_dssp             -STTTSTT--S-EEEEEE-----S
T ss_pred             -cchhhhcccceeeEEecCCcccc
Confidence             22222223568999999987776

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.27  E-value=0.0016  Score=58.45  Aligned_cols=119  Identities=20%  Similarity=0.121  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHcCC------CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCC
Q 018352           18 EFAKTALIKIYSH------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC   91 (357)
Q Consensus        18 nwvks~Li~~~~~------~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~   91 (357)
                      -|.-...+.+++-      .+.+|||+|.|.|-.....++++...++..|+.+..++..+-+.+.++  ..+.|...|+.
T Consensus        60 ~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang--v~i~~~~~d~~  137 (218)
T COG3897          60 AWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG--VSILFTHADLI  137 (218)
T ss_pred             HHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc--ceeEEeecccc
Confidence            4544444455432      578999999999977777777888899999999888777666666654  47888888876


Q ss_pred             CCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352           92 AENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (357)
Q Consensus        92 ~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~  151 (357)
                      .         .+..||+|+..-.    |-+...+.+++.-..++...|-.+++-.|....
T Consensus       138 g---------~~~~~Dl~LagDl----fy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~  184 (218)
T COG3897         138 G---------SPPAFDLLLAGDL----FYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAY  184 (218)
T ss_pred             C---------CCcceeEEEeece----ecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence            5         2478999998763    324455677777444444444455555565533

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.25  E-value=0.00035  Score=56.21  Aligned_cols=100  Identities=18%  Similarity=0.117  Sum_probs=43.5

Q ss_pred             EEECCCCChhHHHHHHh----cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           36 CDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        36 LDlGCG~G~~l~k~~~~----~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      ||+||..|..+..+++.    ...+++++|..+. .+.+++.+++.....+++++.+|...  ....+.  .++||+|..
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~--~l~~~~--~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPD--FLPSLP--DGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THH--HHHHHH--H--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHH--HHHHcC--CCCEEEEEE
Confidence            68999999777666553    2237999999995 22333333332333468999998743  222222  478999987


Q ss_pred             ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      -. -|.    .+.....++.+...|+|||++++.
T Consensus        76 Dg-~H~----~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   76 DG-DHS----YEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             ES--------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CC-CCC----HHHHHHHHHHHHHHcCCCeEEEEe
Confidence            65 222    356778899999999999998864

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.22  E-value=0.00043  Score=69.97  Aligned_cols=60  Identities=17%  Similarity=0.277  Sum_probs=49.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCC
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC   91 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~   91 (357)
                      +.+..+||++||+| .......++..+|+|++++++++..|+.....++.. +++|+++-+.
T Consensus       382 ~~~k~llDv~CGTG-~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE  441 (534)
T KOG2187|consen  382 PADKTLLDVCCGTG-TIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAE  441 (534)
T ss_pred             CCCcEEEEEeecCC-ceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchh
Confidence            46789999999999 444445668889999999999999999988776653 8999999443

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.21  E-value=0.0083  Score=56.56  Aligned_cols=113  Identities=12%  Similarity=0.044  Sum_probs=72.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++..|||+|+|.|..+..++... .+++++|+++.+++..++++...   .+++++.+|+...+....+   ......|
T Consensus        29 ~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~---~~~~vi~~D~l~~~~~~~~---~~~~~~v  101 (262)
T PF00398_consen   29 SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN---PNVEVINGDFLKWDLYDLL---KNQPLLV  101 (262)
T ss_dssp             GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC---SSEEEEES-TTTSCGGGHC---SSSEEEE
T ss_pred             CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc---ccceeeecchhccccHHhh---cCCceEE
Confidence            378999999999999999988777 79999999999999999887632   3789999999886663221   1344455


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~  157 (357)
                      +++-  -|.. +.    .++..+.. +..-|..-+...=..++.+|+-
T Consensus       102 v~Nl--Py~i-s~----~il~~ll~-~~~~g~~~~~l~vq~e~a~rl~  141 (262)
T PF00398_consen  102 VGNL--PYNI-SS----PILRKLLE-LYRFGRVRMVLMVQKEVAERLL  141 (262)
T ss_dssp             EEEE--TGTG-HH----HHHHHHHH-HGGGCEEEEEEEEEHHHHHHHH
T ss_pred             EEEe--cccc-hH----HHHHHHhh-cccccccceEEEEehhhhhhcc
Confidence            5543  3312 22    34444444 2222433333333345556553

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.18  E-value=0.0066  Score=58.16  Aligned_cols=179  Identities=15%  Similarity=0.141  Sum_probs=103.3

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhH--hcCCCceeE-EEEcCCCCCchhh-----------
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE--NQRKNFIAE-FFEADPCAENFET-----------   97 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~--~~~~~~~v~-f~~~D~~~~~~~~-----------   97 (357)
                      ..+||-=|||.|+.+..++..++ .+-|=++|--|+-...-.+.  ....++.+. |++.........+           
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~  229 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH  229 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence            56899999999999999888776 67777888877743332221  110011111 1222111111100           


Q ss_pred             --------------------hhh--hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHH
Q 018352           98 --------------------QMQ--EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (357)
Q Consensus        98 --------------------~l~--~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~  155 (357)
                                          ...  ...+.||+|+..|.    ..+....-..+..|..+|||||+.+-..|=       
T Consensus       230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF----IDTa~NileYi~tI~~iLk~GGvWiNlGPL-------  298 (369)
T KOG2798|consen  230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF----IDTAHNILEYIDTIYKILKPGGVWINLGPL-------  298 (369)
T ss_pred             ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE----eechHHHHHHHHHHHHhccCCcEEEeccce-------
Confidence                                000  12357999876662    445667888999999999999998743221       


Q ss_pred             HHHhHHhhhcCCCCCCCCCCCCccCCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEE
Q 018352          156 YQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYV  235 (357)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv  235 (357)
                                                                   .|+|.-...+.+.+--=.+.+.+..+++..||+++
T Consensus       299 ---------------------------------------------lYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~  333 (369)
T KOG2798|consen  299 ---------------------------------------------LYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVE  333 (369)
T ss_pred             ---------------------------------------------eeeccCCCCCcccccccccHHHHHHHHHhcCcEEE
Confidence                                                         12221111111111112367889999999999999


Q ss_pred             EecCchHHHHhhHHHHHHHHHhcCCCCCCCCCCCChhHHHHHhhheeEEEEe
Q 018352          236 EIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQK  287 (357)
Q Consensus       236 ~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~g~l~~~e~e~~~lY~~f~F~K  287 (357)
                      .......=|..|                    ..|.-++...+.|++.-+.+
T Consensus       334 ke~~Idt~Y~~n--------------------prsm~~~~Y~~~yw~~rk~~  365 (369)
T KOG2798|consen  334 KERGIDTTYGTN--------------------PRSMMENRYQCHYWVLRKPC  365 (369)
T ss_pred             EeeeeecccCCC--------------------HHHHhhhcccceeEEEeccc
Confidence            876443222222                    23445777788887765544

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.09  E-value=0.00014  Score=65.66  Aligned_cols=93  Identities=20%  Similarity=0.317  Sum_probs=65.3

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      ..++||+|.|.|. +.+.....+.+|++.+.|..|..+.+++      .+++- -..+..+         .+-+||+|+|
T Consensus       113 ~~~lLDlGAGdGe-it~~m~p~feevyATElS~tMr~rL~kk------~ynVl-~~~ew~~---------t~~k~dli~c  175 (288)
T KOG3987|consen  113 PVTLLDLGAGDGE-ITLRMAPTFEEVYATELSWTMRDRLKKK------NYNVL-TEIEWLQ---------TDVKLDLILC  175 (288)
T ss_pred             CeeEEeccCCCcc-hhhhhcchHHHHHHHHhhHHHHHHHhhc------CCcee-eehhhhh---------cCceeehHHH
Confidence            3689999999994 4444455667899999999998765443      11221 1111111         2457999999


Q ss_pred             ccchhhccCCHHHHHHHHHHHHhcccC-CcEEEEE
Q 018352          112 FQHLQMCFETEERARRLLQNVSSLLKP-GGYFLGI  145 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~~Lkp-GG~fi~t  145 (357)
                      ...+.-++    +.-++|+.|+.+|+| .|+.|..
T Consensus       176 lNlLDRc~----~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  176 LNLLDRCF----DPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             HHHHHhhc----ChHHHHHHHHHHhccCCCcEEEE
Confidence            98777666    456789999999999 8887765

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.08  E-value=0.002  Score=54.32  Aligned_cols=58  Identities=9%  Similarity=-0.024  Sum_probs=45.4

Q ss_pred             EEEEECCCCChhHHHHHHhcC-CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC
Q 018352           34 TVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA   92 (357)
Q Consensus        34 ~VLDlGCG~G~~l~k~~~~~~-~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~   92 (357)
                      +|||+|||.|..+..++.... .+++++|+++.+.+.+++.++.++.. ++.++...+..
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence            489999999977776666543 48999999999999999988765432 47777777654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.07  E-value=0.0006  Score=62.09  Aligned_cols=79  Identities=19%  Similarity=0.177  Sum_probs=59.4

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      ...|+|.-||.||.+..++.... .|++|||++.-|.-|+..++-.+...+++|+++|...  +...++-....+|+|..
T Consensus        95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld--~~~~lq~~K~~~~~vf~  171 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD--LASKLKADKIKYDCVFL  171 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH--HHHHHhhhhheeeeeec
Confidence            45899999999999988766554 8999999999999999988877776799999999865  22233222234566655


Q ss_pred             cc
Q 018352          112 FQ  113 (357)
Q Consensus       112 ~~  113 (357)
                      ..
T Consensus       172 sp  173 (263)
T KOG2730|consen  172 SP  173 (263)
T ss_pred             CC
Confidence            44

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.03  E-value=0.008  Score=55.09  Aligned_cols=105  Identities=19%  Similarity=0.089  Sum_probs=69.2

Q ss_pred             HHHcCCC-CCEEEEECCCCChhHHHHH-HhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352           25 IKIYSHP-YVTVCDLYCGAGVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        25 i~~~~~~-~~~VLDlGCG~G~~l~k~~-~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      +..+... +.+++|||+|.|--..-++ ..+..+++-+|....-+.--+......+. .+++++++.+....-       
T Consensus        60 ~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~-------  131 (215)
T COG0357          60 LLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQ-------  131 (215)
T ss_pred             hhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhccc-------
Confidence            3334444 5899999999995444433 23445699999988766665555544433 268888887755221       


Q ss_pred             CCc-ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          103 ANQ-ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       103 ~~~-FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ... ||+|+|-.     +.+   ...++.-+..++|+||.++..
T Consensus       132 ~~~~~D~vtsRA-----va~---L~~l~e~~~pllk~~g~~~~~  167 (215)
T COG0357         132 EKKQYDVVTSRA-----VAS---LNVLLELCLPLLKVGGGFLAY  167 (215)
T ss_pred             ccccCcEEEeeh-----ccc---hHHHHHHHHHhcccCCcchhh
Confidence            123 99998875     333   445677778899999987644

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.99  E-value=0.0045  Score=57.18  Aligned_cols=100  Identities=17%  Similarity=0.080  Sum_probs=70.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCcee-EEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIA-EFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v-~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++..+||+|.-|||++.-+++.+.++|+|+|..-..+..-   .+.   ..++ .+-..|+....-..    -.+..|+
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---LR~---d~rV~~~E~tN~r~l~~~~----~~~~~d~  147 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---LRN---DPRVIVLERTNVRYLTPED----FTEKPDL  147 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---Hhc---CCcEEEEecCChhhCCHHH----cccCCCe
Confidence            37899999999999999999999999999999997655421   221   1122 23334443322111    1347899


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ++|--    +|.+   ...+|-.+..+++++|.++..+
T Consensus       148 ~v~Dv----SFIS---L~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         148 IVIDV----SFIS---LKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             EEEEe----ehhh---HHHHHHHHHHhcCCCceEEEEe
Confidence            99877    4533   5678999999999999888663

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=96.97  E-value=0.0013  Score=58.58  Aligned_cols=100  Identities=20%  Similarity=0.217  Sum_probs=73.8

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      ...+.|+|.|+| .+...+.....+|++++.++.--+.|.+..+-.+ ..+++++.+|+...++        ...|+|+|
T Consensus        33 ~d~~~DLGaGsG-iLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g-~~n~evv~gDA~~y~f--------e~ADvvic  102 (252)
T COG4076          33 EDTFADLGAGSG-ILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG-DVNWEVVVGDARDYDF--------ENADVVIC  102 (252)
T ss_pred             hhceeeccCCcc-hHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC-CcceEEEecccccccc--------cccceeHH
Confidence            478999999999 5555555567899999999999888888764333 2378999999988766        56899988


Q ss_pred             ccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                      -. +.-++- .+....+++.+-.-||-.|.+|
T Consensus       103 Em-lDTaLi-~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         103 EM-LDTALI-EEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             HH-hhHHhh-cccccHHHHHHHHHhhcCCccc
Confidence            54 222221 2334457777888888888775

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.95  E-value=0.025  Score=51.15  Aligned_cols=116  Identities=16%  Similarity=0.120  Sum_probs=85.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ++++.+||=||..+|....+...- +.+.++|+++|+.+....-...+...   |+--+..|+....-...   --+..|
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~---Ni~PIL~DA~~P~~Y~~---~Ve~VD  147 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP---NIIPILEDARKPEKYRH---LVEKVD  147 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC---CceeeecccCCcHHhhh---hccccc
Confidence            357899999999999888888775 55789999999998876655554432   56668888876432222   235689


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE--------eCCchHHHHHH
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI--------TPDSSTIWAKY  156 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t--------~pd~~~i~~~~  156 (357)
                      +|.+--      ....+++-+..|+..-||+||++++.        |-++..+++.-
T Consensus       148 viy~DV------AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~e  198 (231)
T COG1889         148 VIYQDV------AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDE  198 (231)
T ss_pred             EEEEec------CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHH
Confidence            987643      24668899999999999999987765        45556666543

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.87  E-value=0.0042  Score=56.46  Aligned_cols=118  Identities=19%  Similarity=0.209  Sum_probs=61.8

Q ss_pred             HHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh-----cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC
Q 018352           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (357)
Q Consensus        19 wvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~-----~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~   93 (357)
                      |.-..||-+.-  ...|+++|.-.||.+..|+..     +.++|+|+||.-...+  +.+.+......+++|+++|....
T Consensus        22 ~~~qeli~~~k--Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~   97 (206)
T PF04989_consen   22 VAYQELIWELK--PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDP   97 (206)
T ss_dssp             HHHHHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSST
T ss_pred             HHHHHHHHHhC--CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCH
Confidence            33445555543  479999999999998877652     4579999999643322  12223222234799999999876


Q ss_pred             chhhhhhhc--CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           94 NFETQMQEK--ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        94 ~~~~~l~~~--~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .....+...  ...-.+|+- -+-|. .   +...+.|+....++.+|+|+|+.
T Consensus        98 ~~~~~v~~~~~~~~~vlVil-Ds~H~-~---~hvl~eL~~y~plv~~G~Y~IVe  146 (206)
T PF04989_consen   98 EIVDQVRELASPPHPVLVIL-DSSHT-H---EHVLAELEAYAPLVSPGSYLIVE  146 (206)
T ss_dssp             HHHHTSGSS----SSEEEEE-SS--------SSHHHHHHHHHHT--TT-EEEET
T ss_pred             HHHHHHHHhhccCCceEEEE-CCCcc-H---HHHHHHHHHhCccCCCCCEEEEE
Confidence            654433222  123334443 33332 2   23556678899999999999876

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=0.0019  Score=56.31  Aligned_cols=120  Identities=15%  Similarity=0.095  Sum_probs=78.2

Q ss_pred             CCCEEEEECCCCChhHHHHHH--hcCCeEEEEeCChHHHHHHHHHhHhcC--CCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~--~~~~~v~GiDiS~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      .+.+||++|.|--+.+..+..  +....|..+|=++++++..++....+.  ...++.....+...    ...+.....|
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~----aqsq~eq~tF  104 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG----AQSQQEQHTF  104 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh----hHHHHhhCcc
Confidence            357899999986545544433  366789999999999998877554331  00111111111111    1112234689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHH
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~  158 (357)
                      |+|.|..++-+    .+....+++.|.++|+|.|.-++..|....-.+++.+
T Consensus       105 DiIlaADClFf----dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~d  152 (201)
T KOG3201|consen  105 DIILAADCLFF----DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLD  152 (201)
T ss_pred             cEEEeccchhH----HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHH
Confidence            99999887654    4556788999999999999988888887554455544

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.82  E-value=0.011  Score=52.77  Aligned_cols=109  Identities=17%  Similarity=0.033  Sum_probs=66.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEc-CCCCCchhhhhh--hcC
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQ--EKA  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~-D~~~~~~~~~l~--~~~  103 (357)
                      +.|+.+|||+||..|.-+.-..+.  +.+.+.|||+-.-        ..-    .-+.++++ |+++......+-  .++
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~----~Ga~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPP----EGATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCC----CCcccccccccCCHHHHHHHHHhCCC
Confidence            458999999999999554433332  5678999998531        111    13455655 776654322221  146


Q ss_pred             CcccEEEEccchhhc----c---CCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          104 NQADLVCCFQHLQMC----F---ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~----f---es~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .+.|+|++-.+-.-.    .   ...+-...++.-....++|+|.|++-+-+.
T Consensus       135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g  187 (232)
T KOG4589|consen  135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG  187 (232)
T ss_pred             CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence            789999875421100    0   112233445555667789999999987665

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.71  E-value=0.018  Score=56.32  Aligned_cols=111  Identities=13%  Similarity=0.018  Sum_probs=77.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHH--hHhcC----CCceeEEEEcCCCCCchhhhhhhcC
Q 018352           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDT--WENQR----KNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r--~~~~~----~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      ...+||-+|.|.|-.+..+.+-+ ..+++-+|+++.||+.+++.  .+..+    ...+++++..|+.+.     ++...
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w-----lr~a~  363 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW-----LRTAA  363 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH-----HHhhc
Confidence            44689999999998888888775 88999999999999999842  22211    134788888887652     22245


Q ss_pred             CcccEEEEccchhhccC-CHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          104 NQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fe-s~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ..||+|+.-+-=-.-+. ..---..+..-+++.|+++|.++...
T Consensus       364 ~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         364 DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence            68999987542111000 00112457888999999999999873

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.66  E-value=0.014  Score=53.15  Aligned_cols=105  Identities=19%  Similarity=0.075  Sum_probs=72.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+||.+|-|-|-...+...++...=+-|+..++.++..+...-..  ..++-...+--.+  ....+  +++.||-|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeD--vl~~L--~d~~FDGI  173 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWED--VLNTL--PDKHFDGI  173 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHh--hhccc--cccCccee
Confidence            478999999999997777777777777788999999988776643221  2245444442211  11112  45779998


Q ss_pred             EEccchhhcc-CCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          110 CCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       110 ~~~~~lh~~f-es~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .---     | +..++.+.+.+.+.++|||+|+|-..
T Consensus       174 ~yDT-----y~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  174 YYDT-----YSELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             Eeec-----hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence            6422     2 44578999999999999999998655

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.61  E-value=0.011  Score=50.47  Aligned_cols=85  Identities=16%  Similarity=0.199  Sum_probs=57.0

Q ss_pred             eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhc-------cCCHHHHHHH
Q 018352           56 NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC-------FETEERARRL  128 (357)
Q Consensus        56 ~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~-------fes~~~~~~~  128 (357)
                      +|+|+||-+++|+.+++|.++.....+++++..+=..  +...++  .+++|+|+-+  +-|+       ....+.-..+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~--l~~~i~--~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~A   74 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN--LDEYIP--EGPVDAAIFN--LGYLPGGDKSITTKPETTLKA   74 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG--GGGT----S--EEEEEEE--ESB-CTS-TTSB--HHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH--HHhhCc--cCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHH
Confidence            5899999999999999999887655578888775322  322222  2579998644  3442       2234556678


Q ss_pred             HHHHHhcccCCcEEEEEe
Q 018352          129 LQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       129 L~~i~~~LkpGG~fi~t~  146 (357)
                      ++.+.++|+|||+++++.
T Consensus        75 l~~al~lL~~gG~i~iv~   92 (140)
T PF06962_consen   75 LEAALELLKPGGIITIVV   92 (140)
T ss_dssp             HHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhhccCCEEEEEE
Confidence            999999999999998884

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.59  E-value=0.017  Score=55.65  Aligned_cols=81  Identities=15%  Similarity=0.042  Sum_probs=60.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FD  107 (357)
                      .++..++|.=||.||++..++.. +.++|+|+|.++.+++.|+++.+..  ..++.+++++....  ...+.. ...++|
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l--~~~l~~~~~~~vD   94 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANF--FEHLDELLVTKID   94 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHH--HHHHHhcCCCccc
Confidence            46789999999999999998876 3479999999999999999987653  23678888876542  222221 235689


Q ss_pred             EEEEccc
Q 018352          108 LVCCFQH  114 (357)
Q Consensus       108 lV~~~~~  114 (357)
                      .|+...+
T Consensus        95 gIl~DLG  101 (305)
T TIGR00006        95 GILVDLG  101 (305)
T ss_pred             EEEEecc
Confidence            8887553

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.57  E-value=0.029  Score=54.94  Aligned_cols=122  Identities=16%  Similarity=0.053  Sum_probs=74.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh---c--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh---hhhhh
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA---L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE---TQMQE  101 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~---~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~---~~l~~  101 (357)
                      +++.+|||+|...|+=+..++.+   .  .+.+++=|++..-+.......+.. ...+..+...|+...+-.   +.-+.
T Consensus       154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l-~~~~~~v~~~~~~~~p~~~~~~~~~~  232 (375)
T KOG2198|consen  154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL-PSPNLLVTNHDASLFPNIYLKDGNDK  232 (375)
T ss_pred             CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc-CCcceeeecccceeccccccccCchh
Confidence            48999999999999877766665   2  238999999988777666655321 122344444444332211   00011


Q ss_pred             cCCcccEEEEcc-----c-hh---hccCC----------HHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          102 KANQADLVCCFQ-----H-LQ---MCFET----------EERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       102 ~~~~FDlV~~~~-----~-lh---~~fes----------~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      ....||-|.|--     + +.   ..|..          ..-.-++|++..++||+||.++-+|++-+.|
T Consensus       233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi  302 (375)
T KOG2198|consen  233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI  302 (375)
T ss_pred             hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence            235789888722     1 00   00100          0113468999999999999999998776544

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.53  E-value=0.021  Score=55.92  Aligned_cols=45  Identities=16%  Similarity=0.149  Sum_probs=30.9

Q ss_pred             cCCcccEEEEccchhhccC------C-----------------------------HHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          102 KANQADLVCCFQHLQMCFE------T-----------------------------EERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fe------s-----------------------------~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ++++.|++.+.+++||+=.      +                             .++...+|+.=++-|+|||+++++.
T Consensus       104 P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~  183 (334)
T PF03492_consen  104 PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGGRMVLTF  183 (334)
T ss_dssp             -TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCcEEEEEE
Confidence            5789999999999999510      0                             1234457777778899999999884

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.49  E-value=0.021  Score=58.71  Aligned_cols=118  Identities=19%  Similarity=0.189  Sum_probs=77.1

Q ss_pred             CCCEEEEECCCCChhHHHHHHh---c--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA---L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~---~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +..+|+|-+||+|+.+......   .  ...++|.++++.....|+...--++...++....+|....+.... ....+.
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~-~~~~~~  264 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDD-KDDKGK  264 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccc-cCCccc
Confidence            5679999999999988765543   2  257999999999999998876544333234556666555443211 112467


Q ss_pred             ccEEEEccchh---hc-----------------cCCHHHH-HHHHHHHHhcccCCcEEEEEeCCc
Q 018352          106 ADLVCCFQHLQ---MC-----------------FETEERA-RRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       106 FDlV~~~~~lh---~~-----------------fes~~~~-~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ||.|+++--+-   |.                 +...... ..+++.+...|+|||+.-+..|+.
T Consensus       265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g  329 (489)
T COG0286         265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG  329 (489)
T ss_pred             eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence            99888754321   10                 1112223 689999999999999655565554

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.29  E-value=0.085  Score=48.31  Aligned_cols=112  Identities=11%  Similarity=0.015  Sum_probs=81.1

Q ss_pred             HHHcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 018352           25 IKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      +..+++.+.++.|+||-.|.....+.+. ....+++.|+++..++.|.+..+..+...+++...+|... .+.     .+
T Consensus        10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~-----~~   83 (226)
T COG2384          10 VANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLE-----LE   83 (226)
T ss_pred             HHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccC-----cc
Confidence            4456667777999999999777777665 5678999999999999999999888776678888888744 231     34


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ..+|+|+...    |  .-.....+|.+-.+.|+.=-+|+. -||.
T Consensus        84 d~~d~ivIAG----M--GG~lI~~ILee~~~~l~~~~rlIL-QPn~  122 (226)
T COG2384          84 DEIDVIVIAG----M--GGTLIREILEEGKEKLKGVERLIL-QPNI  122 (226)
T ss_pred             CCcCEEEEeC----C--cHHHHHHHHHHhhhhhcCcceEEE-CCCC
Confidence            5799988765    1  123466677777777764434444 4555

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.11  E-value=0.046  Score=54.38  Aligned_cols=114  Identities=14%  Similarity=0.037  Sum_probs=77.3

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++.+|||+|+..||=+...+..  ..+.|++.|.+..-++..+..+...+.. +......|....+-  ..  -.++||-
T Consensus       241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~--~~--~~~~fDR  315 (460)
T KOG1122|consen  241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPE--KE--FPGSFDR  315 (460)
T ss_pred             CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccc--cc--cCcccce
Confidence            6889999999999877766554  5668999999999999888887776532 45556677653221  11  1247998


Q ss_pred             EEE----cc--chh--hc---cCCH-------HHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCC----FQ--HLQ--MC---FETE-------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~----~~--~lh--~~---fes~-------~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |..    ..  .+.  -+   ..+.       .-.+++|-.+.+++++||+++-+|+.-
T Consensus       316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI  374 (460)
T KOG1122|consen  316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI  374 (460)
T ss_pred             eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence            873    22  100  00   1111       124678999999999999999876543

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.08  E-value=0.02  Score=53.51  Aligned_cols=107  Identities=18%  Similarity=0.141  Sum_probs=65.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++..+|+|||||.=-.+..|... ....|+|+||+..+++....-....+.  +.++...|+....       +....|+
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~-------~~~~~Dl  174 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP-------PKEPADL  174 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-------TTSEESE
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC-------CCCCcch
Confidence            35789999999988777777654 345999999999999988776655432  5566777887653       3578999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ....=.+|. +  +.+.+..--++-+.+.. =.++++.|-.
T Consensus       175 aLllK~lp~-l--e~q~~g~g~~ll~~~~~-~~~vVSfPtr  211 (251)
T PF07091_consen  175 ALLLKTLPC-L--ERQRRGAGLELLDALRS-PHVVVSFPTR  211 (251)
T ss_dssp             EEEET-HHH-H--HHHSTTHHHHHHHHSCE-SEEEEEEES-
T ss_pred             hhHHHHHHH-H--HHHhcchHHHHHHHhCC-CeEEEecccc
Confidence            988777776 3  22222222223333332 2566666653

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.01  E-value=0.09  Score=48.06  Aligned_cols=113  Identities=13%  Similarity=0.125  Sum_probs=63.8

Q ss_pred             CCCEEEEECCCCChhHHHHHH---hcCCeEEEEeCChHHHHHHHHHhHh-------------------------------
Q 018352           31 PYVTVCDLYCGAGVDVDKWET---ALIANYIGIDVATSGIGEARDTWEN-------------------------------   76 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~---~~~~~v~GiDiS~~~l~~A~~r~~~-------------------------------   76 (357)
                      ...++-|-|||.|..+.-+.-   .....|+|.||++++|+.|+++..-                               
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            456899999999976654332   2567899999999999999874310                               


Q ss_pred             ----------cCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhc--cC---CHHHHHHHHHHHHhcccCCcE
Q 018352           77 ----------QRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC--FE---TEERARRLLQNVSSLLKPGGY  141 (357)
Q Consensus        77 ----------~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~--fe---s~~~~~~~L~~i~~~LkpGG~  141 (357)
                                .+-.......++|++......... .....|+|+.-.-.-.+  ++   +.+-..+||.+++.+|-.+++
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV  209 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV  209 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence                      011334678889998755433332 23456999874321111  22   244567899999999944444


Q ss_pred             EEE
Q 018352          142 FLG  144 (357)
Q Consensus       142 fi~  144 (357)
                      +.+
T Consensus       210 V~v  212 (246)
T PF11599_consen  210 VAV  212 (246)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=95.94  E-value=0.41  Score=44.54  Aligned_cols=119  Identities=14%  Similarity=-0.033  Sum_probs=68.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      .+.+||=||=+.-..+...+.....+|+.+||++..|+.-++..+..+.  +++.+..|+.. ++...   -.++||+++
T Consensus        44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~~~~~DlR~-~LP~~---~~~~fD~f~  117 (243)
T PF01861_consen   44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIEAVHYDLRD-PLPEE---LRGKFDVFF  117 (243)
T ss_dssp             TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TT---TSS-BSEEE
T ss_pred             cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceEEEEecccc-cCCHH---HhcCCCEEE
Confidence            6789999986544222222233567999999999999998888877654  58889999876 33211   248999998


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCc-EEEEE--eCC-chHHHHHHHHhH
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGI--TPD-SSTIWAKYQKNV  160 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG-~fi~t--~pd-~~~i~~~~~~~~  160 (357)
                      +.-     -++.+-..-++......||.-| ..++.  .-. +...|..+++..
T Consensus       118 TDP-----PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l  166 (243)
T PF01861_consen  118 TDP-----PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFL  166 (243)
T ss_dssp             E--------SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHH
T ss_pred             eCC-----CCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHH
Confidence            865     3477889999999999999766 32322  222 244555666543

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=95.90  E-value=0.25  Score=47.45  Aligned_cols=47  Identities=26%  Similarity=0.273  Sum_probs=41.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHh
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWEN   76 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~   76 (357)
                      .++...+|.--|.||.+..++...  .++++|+|-++.+|+.|+++...
T Consensus        22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~   70 (314)
T COG0275          22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE   70 (314)
T ss_pred             CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence            477899999999999999998874  46899999999999999998865

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.86  E-value=0.025  Score=51.21  Aligned_cols=110  Identities=16%  Similarity=0.231  Sum_probs=65.6

Q ss_pred             CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCC------CceeEEEEcCCCCCchhhhhhhcCC
Q 018352           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK------NFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~------~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      ...+.|||||-|+.+.++... +..-+.|.+|-...-+..++|+...+.      ..++.+...++..  +-..+- ..+
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk--~lpn~f-~kg  137 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK--FLPNFF-EKG  137 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh--hccchh-hhc
Confidence            357999999999999988766 556789999999988888888876431      1133444444322  100000 011


Q ss_pred             ccc-EEEEccchhhccCCHH-----HHHHHHHHHHhcccCCcEEEEEe
Q 018352          105 QAD-LVCCFQHLQMCFETEE-----RARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       105 ~FD-lV~~~~~lh~~fes~~-----~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +-+ ..+|.---|. - ...     -...++.+..-+|++||.++.++
T Consensus       138 qLskmff~fpdpHf-k-~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  138 QLSKMFFLFPDPHF-K-ARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             ccccceeecCChhH-h-hhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            111 1222222222 0 000     02358899999999999988664

>PRK11524 putative methyltransferase; Provisional

Probab=95.85  E-value=0.029  Score=53.51  Aligned_cols=55  Identities=18%  Similarity=0.162  Sum_probs=44.6

Q ss_pred             HHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHh
Q 018352           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN   76 (357)
Q Consensus        21 ks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~   76 (357)
                      -..+|..+..++..|||--||+|..+....+. ..+++|+|++++.++.|++|+..
T Consensus       198 ~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        198 LKRIILASSNPGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence            34566777789999999999999666555444 45999999999999999999853

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=95.82  E-value=0.24  Score=49.41  Aligned_cols=46  Identities=15%  Similarity=0.156  Sum_probs=33.6

Q ss_pred             cCCcccEEEEccchhhccCC----------------------------------HHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          102 KANQADLVCCFQHLQMCFET----------------------------------EERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes----------------------------------~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +.++.+++.+.+++||+=.-                                  ..+...+|+.=++-|+|||++++++.
T Consensus       159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~  238 (386)
T PLN02668        159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL  238 (386)
T ss_pred             CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence            56889999999999994210                                  01234567777788999999998853

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.75  E-value=0.03  Score=50.43  Aligned_cols=52  Identities=27%  Similarity=0.305  Sum_probs=38.4

Q ss_pred             HHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHH
Q 018352           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD   72 (357)
Q Consensus        20 vks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~   72 (357)
                      +-..+|..+..++..|||.-||+|..+......+ .+++|+|++++..+.|++
T Consensus       180 l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  180 LIERLIKASTNPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHhhhccceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHHHHhcC
Confidence            3445667778899999999999996666655544 489999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=95.66  E-value=0.035  Score=55.28  Aligned_cols=108  Identities=14%  Similarity=0.161  Sum_probs=73.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCc-eeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~-~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ...+|||.=+|+|-=...|+..  +..+|+.-|+|+++++..++..+.++... .++..+.|+...     +......||
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~l-----l~~~~~~fD  123 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVL-----LYSRQERFD  123 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHH-----HCHSTT-EE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHH-----hhhccccCC
Confidence            3569999999999655555544  56799999999999999999988776655 577888886431     111357899


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~  151 (357)
                      +|=.--     |.+   +..+|..+.+.++.||++.+|.-|...
T Consensus       124 ~IDlDP-----fGS---p~pfldsA~~~v~~gGll~vTaTD~a~  159 (377)
T PF02005_consen  124 VIDLDP-----FGS---PAPFLDSALQAVKDGGLLCVTATDTAV  159 (377)
T ss_dssp             EEEE-------SS-----HHHHHHHHHHEEEEEEEEEEE--HHH
T ss_pred             EEEeCC-----CCC---ccHhHHHHHHHhhcCCEEEEecccccc
Confidence            995432     433   556899999999999999999666543

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK10742 putative methyltransferase; Provisional

Probab=95.66  E-value=0.038  Score=51.71  Aligned_cols=95  Identities=11%  Similarity=0.008  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHcC--CCCC--EEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc------CC--C
Q 018352           13 HHRLYEFAKTALIKIYS--HPYV--TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ------RK--N   80 (357)
Q Consensus        13 ~~~~~nwvks~Li~~~~--~~~~--~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~------~~--~   80 (357)
                      ++|....-+...|.+-+  +++.  +|||+-+|.|.+...++..+. .|+++|-++......++..+..      ..  .
T Consensus        66 ~rR~~~~g~~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~  144 (250)
T PRK10742         66 HRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQ  144 (250)
T ss_pred             HHHHhcCCCccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhh
Confidence            33433333334444433  3555  899999999999999888877 5999999999887776655431      11  1


Q ss_pred             ceeEEEEcCCCCCchhhhhhhcCCcccEEEEcc
Q 018352           81 FIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (357)
Q Consensus        81 ~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~  113 (357)
                      .+++++.+|...  +   +.....+||+|.+--
T Consensus       145 ~ri~l~~~da~~--~---L~~~~~~fDVVYlDP  172 (250)
T PRK10742        145 ERLQLIHASSLT--A---LTDITPRPQVVYLDP  172 (250)
T ss_pred             ceEEEEeCcHHH--H---HhhCCCCCcEEEECC
Confidence            357778887643  1   111234799999876

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=95.56  E-value=0.11  Score=50.19  Aligned_cols=117  Identities=18%  Similarity=0.259  Sum_probs=79.5

Q ss_pred             CEEEEECCCCChhHHHHHHhc------------C---------CeEEEEeCChHH--HHHHHHHhHhc------------
Q 018352           33 VTVCDLYCGAGVDVDKWETAL------------I---------ANYIGIDVATSG--IGEARDTWENQ------------   77 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~------------~---------~~v~GiDiS~~~--l~~A~~r~~~~------------   77 (357)
                      .+||-||.|.|..+..++..-            .         -+++.|||++-.  ++.....+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            699999999987665443210            1         279999998743  22222222211            


Q ss_pred             ----CCCceeEEEEcCCCCCchhhhhhh-cCCcccEEEEccchhhcc-CCHHHHHHHHHHHHhcccCCcEEEEE-eCCc
Q 018352           78 ----RKNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGI-TPDS  149 (357)
Q Consensus        78 ----~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FDlV~~~~~lh~~f-es~~~~~~~L~~i~~~LkpGG~fi~t-~pd~  149 (357)
                          ...+++.|.+.|+......+...- .....|+|+..|.++-.| ++..+..++|.++...++||-.+++. .|.+
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS  246 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS  246 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence                235689999999988655321100 113689999999988766 45777889999999999999998876 4444

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.55  E-value=0.035  Score=52.76  Aligned_cols=73  Identities=19%  Similarity=0.094  Sum_probs=54.7

Q ss_pred             EEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEcc
Q 018352           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (357)
Q Consensus        34 ~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~  113 (357)
                      +|+|+.||.|+...-+..+++..+.++|+++.+++..+.++..       ..+.+|+.......    ....+|+++..+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~----~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKD----FIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhh----cCCCCCEEEeCC
Confidence            6999999999998888888888899999999998877766532       14667776644311    035699999877


Q ss_pred             chhh
Q 018352          114 HLQM  117 (357)
Q Consensus       114 ~lh~  117 (357)
                      ..+.
T Consensus        71 PCq~   74 (275)
T cd00315          71 PCQP   74 (275)
T ss_pred             CChh
Confidence            5543

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.53  E-value=0.0075  Score=52.21  Aligned_cols=56  Identities=23%  Similarity=0.336  Sum_probs=48.3

Q ss_pred             cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHh
Q 018352          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN  159 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~  159 (357)
                      .+++.|+|.|-.++.+ + +.+.-..+++.+++.|||||++-+..||...+...|+..
T Consensus        44 ~dns~d~iyaeHvlEH-l-t~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~   99 (185)
T COG4627          44 EDNSVDAIYAEHVLEH-L-TYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHD   99 (185)
T ss_pred             CCcchHHHHHHHHHHH-H-hHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhh
Confidence            4689999998887776 4 467788999999999999999999999999988888754

>PRK13699 putative methylase; Provisional

Probab=95.42  E-value=0.06  Score=49.79  Aligned_cols=55  Identities=22%  Similarity=0.333  Sum_probs=45.0

Q ss_pred             HHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc
Q 018352           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (357)
Q Consensus        22 s~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~   77 (357)
                      ..+|..+..++..|||--||+|..+......+ .+++|+|++++..+.|.+|++..
T Consensus       154 ~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~-r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        154 QPLIESFTHPNAIVLDPFAGSGSTCVAALQSG-RRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcC-CCEEEEecCHHHHHHHHHHHHHH
Confidence            45666777899999999999997666655544 48999999999999999998653

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.16  E-value=0.015  Score=47.38  Aligned_cols=41  Identities=27%  Similarity=0.481  Sum_probs=31.0

Q ss_pred             cccEEEEccchhhc--cCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMC--FETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~--fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +||+|+|..+.-|.  --..+-...+++.+++.|+|||+||+-
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            49999998763321  113566889999999999999999987

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.64  E-value=0.11  Score=50.91  Aligned_cols=125  Identities=13%  Similarity=0.119  Sum_probs=82.3

Q ss_pred             chHHHHHHHHHHHHHHHcCCC-CCEEEEECCCCChhHHHHHH-hcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEc
Q 018352           11 LTHHRLYEFAKTALIKIYSHP-YVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA   88 (357)
Q Consensus        11 ~p~~~~~nwvks~Li~~~~~~-~~~VLDlGCG~G~~l~k~~~-~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~   88 (357)
                      +|..++|.=+--.+++.+.+. ..+|||-=||+|-=...++. .+..+++.-|+|+.+++.+++..+.+. ..+...+..
T Consensus        31 NP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~~~~~v~n~  109 (380)
T COG1867          31 NPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-GEDAEVINK  109 (380)
T ss_pred             CchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-cccceeecc
Confidence            455566655555566666543 57999999999954444433 355589999999999999999887652 224555556


Q ss_pred             CCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        89 D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |+...-.     .....||+|=.--     |.+   +--++..+.+.++.||++.+|.-|.
T Consensus       110 DAN~lm~-----~~~~~fd~IDiDP-----FGS---PaPFlDaA~~s~~~~G~l~vTATD~  157 (380)
T COG1867         110 DANALLH-----ELHRAFDVIDIDP-----FGS---PAPFLDAALRSVRRGGLLCVTATDT  157 (380)
T ss_pred             hHHHHHH-----hcCCCccEEecCC-----CCC---CchHHHHHHHHhhcCCEEEEEeccc
Confidence            6533111     1237899984432     333   3346777777888899999995554

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.39  E-value=0.37  Score=41.64  Aligned_cols=104  Identities=15%  Similarity=0.071  Sum_probs=71.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      +..+.+|||.|.|+.....++.+...-+|+++++-.+..++-+.-..+......|..-|+...++        ..|..|+
T Consensus        72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl--------~dy~~vv  143 (199)
T KOG4058|consen   72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL--------RDYRNVV  143 (199)
T ss_pred             CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc--------cccceEE
Confidence            45789999999999888887777668899999999998887765444444467788888877666        3355554


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE-eCCc
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDS  149 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t-~pd~  149 (357)
                      ++.       .++-+..+-..+..-|..+-.++.+ +|=.
T Consensus       144 iFg-------aes~m~dLe~KL~~E~p~nt~vvacRFPLP  176 (199)
T KOG4058|consen  144 IFG-------AESVMPDLEDKLRTELPANTRVVACRFPLP  176 (199)
T ss_pred             Eee-------hHHHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence            433       2222333444455566777777766 4433

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.29  E-value=0.41  Score=46.90  Aligned_cols=94  Identities=16%  Similarity=0.132  Sum_probs=64.3

Q ss_pred             cCCCCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           28 YSHPYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      .++|+.+|+=+|+| |  ..+.+++++-..+|+++|.|++-++.|++.-..       .++...  ..+....+   .+.
T Consensus       163 ~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~--~~~~~~~~---~~~  229 (339)
T COG1064         163 NVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSS--DSDALEAV---KEI  229 (339)
T ss_pred             CCCCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcC--CchhhHHh---Hhh
Confidence            35689999999999 5  455677776448999999999999988876432       223322  11221111   234


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ||+|+..-. .+          .+....+.|++||.++..
T Consensus       230 ~d~ii~tv~-~~----------~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         230 ADAIIDTVG-PA----------TLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             CcEEEECCC-hh----------hHHHHHHHHhcCCEEEEE
Confidence            999987664 33          356677799999999877

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.27  E-value=0.12  Score=47.76  Aligned_cols=94  Identities=11%  Similarity=0.103  Sum_probs=58.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhc-CCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~-~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ++.++||||.|.- =+..+.-.  ..-+.+|.||++.+++.|+.....+ +....++.....-.. .+...+....+.||
T Consensus        78 ~~i~~LDIGvGAn-CIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~-~if~giig~nE~yd  155 (292)
T COG3129          78 KNIRILDIGVGAN-CIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD-AIFNGIIGKNERYD  155 (292)
T ss_pred             CceEEEeeccCcc-cccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc-ccccccccccceee
Confidence            5679999998864 22222211  2338999999999999999988765 333334443221111 11122222468999


Q ss_pred             EEEEccchhhccCCHHHHHHHH
Q 018352          108 LVCCFQHLQMCFETEERARRLL  129 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L  129 (357)
                      ++.|+--+|-   +.+++++.-
T Consensus       156 ~tlCNPPFh~---s~~da~~gs  174 (292)
T COG3129         156 ATLCNPPFHD---SAADARAGS  174 (292)
T ss_pred             eEecCCCcch---hHHHHHhcc
Confidence            9999998887   566665543

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=94.10  E-value=0.35  Score=46.26  Aligned_cols=122  Identities=13%  Similarity=0.038  Sum_probs=81.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCC---CceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK---NFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~---~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ...+||=||-|.|+.+..-.++ ...++.-+||....++..++-.+....   ..++...-+|...  +-..+  +.++|
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~--fl~~~--~~~~~  196 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL--FLEDL--KENPF  196 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH--HHHHh--ccCCc
Confidence            4578999999999998876666 567899999999999888876654321   2367778887643  22222  35899


Q ss_pred             cEEEEccchhhccCC-HHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHH
Q 018352          107 DLVCCFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (357)
Q Consensus       107 DlV~~~~~lh~~fes-~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~  158 (357)
                      |+|+.--.=-- -.. .--.+.+++.+.+.||+||+.+... ++-.+..++-+
T Consensus       197 dVii~dssdpv-gpa~~lf~~~~~~~v~~aLk~dgv~~~q~-ec~wl~~~~i~  247 (337)
T KOG1562|consen  197 DVIITDSSDPV-GPACALFQKPYFGLVLDALKGDGVVCTQG-ECMWLHLDYIK  247 (337)
T ss_pred             eEEEEecCCcc-chHHHHHHHHHHHHHHHhhCCCcEEEEec-ceehHHHHHHH
Confidence            99975321000 000 1124678899999999999998775 44444444433

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=94.09  E-value=0.86  Score=42.71  Aligned_cols=107  Identities=19%  Similarity=0.175  Sum_probs=69.7

Q ss_pred             CCEEEEECCCCChhHHHHHHh-----cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           32 YVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~-----~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..+.+|+|.|+..-+..++.+     ...+|+.+|+|...++...+.+........+.-+++|... .+..    .++.-
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~-~La~----~~~~~  153 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYEL-ALAE----LPRGG  153 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHH-HHhc----ccCCC
Confidence            679999999998766655554     2358999999999997654444333223345555666432 1111    11222


Q ss_pred             cE--EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DL--VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 Dl--V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      --  +....++.+ | +.+....+|..+...|+||-+|++-
T Consensus       154 ~Rl~~flGStlGN-~-tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         154 RRLFVFLGSTLGN-L-TPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             eEEEEEecccccC-C-ChHHHHHHHHHHHhcCCCcceEEEe
Confidence            22  223334666 5 6778999999999999999998865

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=94.08  E-value=1.3  Score=41.84  Aligned_cols=112  Identities=13%  Similarity=0.047  Sum_probs=71.3

Q ss_pred             CEEEEECCCCChhHHHHHHhcCCeEEEEeCChH-HHHHHHHHhHhcC--CCceeEEEEcCCCCCchhhhhhhc---CCcc
Q 018352           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATS-GIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK---ANQA  106 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~-~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~l~~~---~~~F  106 (357)
                      ..|+.||||-  |+..+.......+.-+|++-. .++.-++.++..+  ...+..++.+|+. ......+...   ...-
T Consensus        83 ~qvV~LGaGl--DTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~p  159 (260)
T TIGR00027        83 RQVVILGAGL--DTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTAP  159 (260)
T ss_pred             cEEEEeCCcc--ccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCCC
Confidence            4799999996  454443322113444555444 3444444454321  1346788999987 4443433321   2334


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      -++++-.++.| + +.+...++++.+.+...||+.+++...+.
T Consensus       160 tl~i~EGvl~Y-L-~~~~v~~ll~~i~~~~~~gs~l~~d~~~~  200 (260)
T TIGR00027       160 TAWLWEGLLMY-L-TEEAVDALLAFIAELSAPGSRLAFDYVRP  200 (260)
T ss_pred             eeeeecchhhc-C-CHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence            57778888888 6 67889999999999999999999886553

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.01  E-value=0.23  Score=48.62  Aligned_cols=121  Identities=14%  Similarity=0.130  Sum_probs=63.8

Q ss_pred             CCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ..+|||+|.|.|.-+......  ....++.++.|+..-+......+ +-.......-..|++...+      .-..-|.+
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~-nv~t~~td~r~s~vt~dRl------~lp~ad~y  186 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAE-NVSTEKTDWRASDVTEDRL------SLPAADLY  186 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHh-hcccccCCCCCCccchhcc------CCCcccee
Confidence            467999999998443322111  22355666666544333322222 1111112223333333222      12345555


Q ss_pred             EEccchhhcc--CCHHHHHHHHHHHHhcccCCcEEEEE---eCCchHHHHHHHHh
Q 018352          110 CCFQHLQMCF--ETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKN  159 (357)
Q Consensus       110 ~~~~~lh~~f--es~~~~~~~L~~i~~~LkpGG~fi~t---~pd~~~i~~~~~~~  159 (357)
                      .+..++|-..  .++......++.+..++.|||.|+++   +|-.-.++.+.++.
T Consensus       187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~  241 (484)
T COG5459         187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQI  241 (484)
T ss_pred             ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHH
Confidence            5555555433  33444566899999999999999999   44444455555543

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=93.67  E-value=1.4  Score=43.87  Aligned_cols=128  Identities=16%  Similarity=0.195  Sum_probs=73.4

Q ss_pred             CCCEEEEECCCCChhH----HHHHHh----cCCeEEEEeC----ChHHHHHHHHHhHhc--CCCceeEEEE--cC-CCCC
Q 018352           31 PYVTVCDLYCGAGVDV----DKWETA----LIANYIGIDV----ATSGIGEARDTWENQ--RKNFIAEFFE--AD-PCAE   93 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l----~k~~~~----~~~~v~GiDi----S~~~l~~A~~r~~~~--~~~~~v~f~~--~D-~~~~   93 (357)
                      ...+|+|+|.|.|.--    ..++..    +.-++|||+.    +...++.+.++...-  ......+|..  .+ ....
T Consensus       110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l  189 (374)
T PF03514_consen  110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL  189 (374)
T ss_pred             cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence            4568999999999422    222222    2237999999    889999988876542  1122334443  22 2111


Q ss_pred             chhhhhhhcCCcccEEEEccchhhccCCH---H-HHHHHHHHHHhcccCCcEEEEE---eCCchHHHHHHHHhH
Q 018352           94 NFETQMQEKANQADLVCCFQHLQMCFETE---E-RARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV  160 (357)
Q Consensus        94 ~~~~~l~~~~~~FDlV~~~~~lh~~fes~---~-~~~~~L~~i~~~LkpGG~fi~t---~pd~~~i~~~~~~~~  160 (357)
                      .. ..+....+..=+|.|.+.+|++....   + ....+|+.| +.|+|.-..++.   ..|+..+..|+.+.+
T Consensus       190 ~~-~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~~E~ea~~n~~~F~~RF~eal  261 (374)
T PF03514_consen  190 DP-SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVVLVEQEADHNSPSFLERFREAL  261 (374)
T ss_pred             CH-HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEEEEeecCCCCCCchHHHHHHHH
Confidence            11 12222345566777888899965221   1 234466555 578998555444   234456666666554

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=93.58  E-value=0.34  Score=43.79  Aligned_cols=109  Identities=22%  Similarity=0.100  Sum_probs=59.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHH----HHHH--hHhcCCCceeEEEEcCCCCCchhhhhh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGE----ARDT--WENQRKNFIAEFFEADPCAENFETQMQ  100 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~----A~~r--~~~~~~~~~v~f~~~D~~~~~~~~~l~  100 (357)
                      ++++.+|+|+--|.|..+.-+...  ..+.|+++=..+...=.    .+.+  .++. ..-+.+.+-.+.....      
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-~~aN~e~~~~~~~A~~------  118 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-VYANVEVIGKPLVALG------  118 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-hhhhhhhhCCcccccC------
Confidence            357899999999999776665543  33467766554431110    0000  0000 0012222323322221      


Q ss_pred             hcCCcccEEEEcc---chhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          101 EKANQADLVCCFQ---HLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       101 ~~~~~FDlV~~~~---~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                       ..+..|++....   .+|.-+-+...+.++...+++.|||||.+++.
T Consensus       119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~  165 (238)
T COG4798         119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE  165 (238)
T ss_pred             -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence             234455554422   23333334566888999999999999999876

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=93.20  E-value=0.27  Score=47.59  Aligned_cols=79  Identities=16%  Similarity=0.170  Sum_probs=51.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCCc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~~  105 (357)
                      ..++..++|.--|.||.+..++.. +.++++|+|.++++++.|+++....  ..++.+++++..+  +...+..  ....
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~--l~~~l~~~~~~~~   93 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSN--LDEYLKELNGINK   93 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGG--HHHHHHHTTTTS-
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHH--HHHHHHHccCCCc
Confidence            347789999999999999999876 5589999999999999998887643  2367777776543  2222221  1246


Q ss_pred             ccEEEE
Q 018352          106 ADLVCC  111 (357)
Q Consensus       106 FDlV~~  111 (357)
                      +|.|+.
T Consensus        94 ~dgiL~   99 (310)
T PF01795_consen   94 VDGILF   99 (310)
T ss_dssp             EEEEEE
T ss_pred             cCEEEE
Confidence            776665

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=93.08  E-value=0.28  Score=48.59  Aligned_cols=108  Identities=19%  Similarity=0.174  Sum_probs=65.6

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHHhcC-CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC-chhhhhhh--cCC
Q 018352           30 HPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQE--KAN  104 (357)
Q Consensus        30 ~~~~~VLDlGCG~-G~~l~k~~~~~~-~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~-~~~~~l~~--~~~  104 (357)
                      .++.+||.+|||. |..+..+++... .+++++|.+++.++.+++...       +.++.  .... .+...+..  ...
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~-------~~vi~--~~~~~~~~~~l~~~~~~~  253 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG-------AETIN--FEEVDDVVEALRELTGGR  253 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------cEEEc--CCcchHHHHHHHHHcCCC
Confidence            4678999999987 666667766643 469999999999988877531       12221  1111 12222211  224


Q ss_pred             cccEEEEccchh-------h----ccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          105 QADLVCCFQHLQ-------M----CFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       105 ~FDlV~~~~~lh-------~----~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      .+|+|+..-.-+       .    .+....+....+..+.++|+++|.++...
T Consensus       254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            699987643211       1    01111122456788889999999998763

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.06  E-value=0.058  Score=54.69  Aligned_cols=110  Identities=13%  Similarity=0.146  Sum_probs=78.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++.+|||.=|++|-.+..|+..  +..++++-|.++.+++..++..+.+.....++-.+.|+...-..  .+.....||+
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~--~~~~~~~FDv  186 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE--HPMVAKFFDV  186 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh--ccccccccce
Confidence            3568999999999888888775  67899999999999998888877664444455556665432221  1112478999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      |=.--     |.   ....+|..+.+.++.||.+.+|.-|..
T Consensus       187 IDLDP-----yG---s~s~FLDsAvqav~~gGLL~vT~TD~a  220 (525)
T KOG1253|consen  187 IDLDP-----YG---SPSPFLDSAVQAVRDGGLLCVTCTDMA  220 (525)
T ss_pred             EecCC-----CC---CccHHHHHHHHHhhcCCEEEEEecchH
Confidence            84322     22   345678888999999999999966643

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.82  E-value=0.82  Score=42.36  Aligned_cols=114  Identities=18%  Similarity=0.229  Sum_probs=72.0

Q ss_pred             CCEEEEECCCCChhHHHHHHh-----c-----CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh-hh
Q 018352           32 YVTVCDLYCGAGVDVDKWETA-----L-----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-MQ  100 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~-----~-----~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~-l~  100 (357)
                      -.+|.|||...|....-+.+.     .     ...+++||+.+-+            ....+.-+++|+++...... +.
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma------------PI~GV~qlq~DIT~~stae~Ii~  109 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA------------PIEGVIQLQGDITSASTAEAIIE  109 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC------------ccCceEEeecccCCHhHHHHHHH
Confidence            358999999999655444332     1     1239999997532            11246678999988654322 11


Q ss_pred             h-cCCcccEEEEcc-----chhhccCC---HHHHHHHHHHHHhcccCCcEEEEEeCCc---hHHHHHHHH
Q 018352          101 E-KANQADLVCCFQ-----HLQMCFET---EERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK  158 (357)
Q Consensus       101 ~-~~~~FDlV~~~~-----~lh~~fes---~~~~~~~L~~i~~~LkpGG~fi~t~pd~---~~i~~~~~~  158 (357)
                      . ..++.|+|+|-.     ++|- +..   .+-...+|.-...+|||||.|+.-+...   ..|+..++.
T Consensus       110 hfggekAdlVvcDGAPDvTGlHd-~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~  178 (294)
T KOG1099|consen  110 HFGGEKADLVVCDGAPDVTGLHD-LDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRK  178 (294)
T ss_pred             HhCCCCccEEEeCCCCCcccccc-HHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHH
Confidence            1 246899999965     4675 211   2234456777789999999999875443   455555543

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=92.65  E-value=0.52  Score=43.90  Aligned_cols=107  Identities=15%  Similarity=0.061  Sum_probs=72.7

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      .+++++.+||=||++.|.......+.  +-.-|++++.|.-+=.....-.+..   .|+--+.-|+....-..-   .-.
T Consensus       152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRm---lVg  225 (317)
T KOG1596|consen  152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRM---LVG  225 (317)
T ss_pred             eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheee---eee
Confidence            34568999999999999877777664  4567999999975533322222211   256667778766332110   124


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ..|+|++--      ...++++.+.-|++--||+||.|++.
T Consensus       226 mVDvIFaDv------aqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  226 MVDVIFADV------AQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             eEEEEeccC------CCchhhhhhhhhhhhhhccCCeEEEE
Confidence            677775533      34677888899999999999999988

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.47  E-value=0.74  Score=44.68  Aligned_cols=103  Identities=11%  Similarity=0.096  Sum_probs=63.2

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC-Cchhhhhhh--cCC
Q 018352           30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE--KAN  104 (357)
Q Consensus        30 ~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~-~~~~~~l~~--~~~  104 (357)
                      +++.+||=+|+|. |-.+..++++ +.++|+.+|+++.-|+.|++ +-.     .+......... ..+.+.+..  ...
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga-----~~~~~~~~~~~~~~~~~~v~~~~g~~  241 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA-----TVTDPSSHKSSPQELAELVEKALGKK  241 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC-----eEEeeccccccHHHHHHHHHhhcccc
Confidence            4689999999996 5455566665 88899999999999999988 422     11111111111 111111111  124


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      .+|+++-...++-          .++..-..+|+||.++.....
T Consensus       242 ~~d~~~dCsG~~~----------~~~aai~a~r~gGt~vlvg~g  275 (354)
T KOG0024|consen  242 QPDVTFDCSGAEV----------TIRAAIKATRSGGTVVLVGMG  275 (354)
T ss_pred             CCCeEEEccCchH----------HHHHHHHHhccCCEEEEeccC
Confidence            5888775554443          345556789999997666433

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=92.39  E-value=0.88  Score=42.66  Aligned_cols=109  Identities=17%  Similarity=0.016  Sum_probs=62.5

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHh----cCCCceeEEEEcCCCCCchhhhhhhcCCc-c
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN----QRKNFIAEFFEADPCAENFETQMQEKANQ-A  106 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~----~~~~~~v~f~~~D~~~~~~~~~l~~~~~~-F  106 (357)
                      ..+||++|.|+|-....++.....+|+..|+..........+-..    .+....+.....+-....-.+.   .... |
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~---~~~~~~  163 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSF---RLPNPF  163 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhh---ccCCcc
Confidence            457999999999666666665677999999987665443332211    1111133333333222111111   1223 9


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |+|++.-++-.    ++...-++..++..|-.+|..++.++
T Consensus       164 DlilasDvvy~----~~~~e~Lv~tla~ll~~~~~i~l~~~  200 (248)
T KOG2793|consen  164 DLILASDVVYE----EESFEGLVKTLAFLLAKDGTIFLAYP  200 (248)
T ss_pred             cEEEEeeeeec----CCcchhHHHHHHHHHhcCCeEEEEEe
Confidence            99998775432    33445567777788888885555443

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=92.39  E-value=0.27  Score=46.83  Aligned_cols=71  Identities=17%  Similarity=0.141  Sum_probs=51.4

Q ss_pred             EEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEcc
Q 018352           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (357)
Q Consensus        34 ~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~  113 (357)
                      +|+||.||.|+...-+..+++..+.++|+++.+.+.-+..+.        ....+|+...... .++  . .+|+++..+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~-~l~--~-~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPS-DLP--K-DVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHH-HHH--H-T-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccc-ccc--c-cceEEEecc
Confidence            799999999999999999998889999999997776655553        5688898776543 222  2 599998755


Q ss_pred             chh
Q 018352          114 HLQ  116 (357)
Q Consensus       114 ~lh  116 (357)
                      -.+
T Consensus        70 PCQ   72 (335)
T PF00145_consen   70 PCQ   72 (335)
T ss_dssp             --T
T ss_pred             CCc
Confidence            433

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=92.03  E-value=0.45  Score=44.20  Aligned_cols=75  Identities=13%  Similarity=0.055  Sum_probs=44.9

Q ss_pred             CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHH---HHhHhcCCC-----ceeEEEEcCCCCCchhhhhhhcCC
Q 018352           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR---DTWENQRKN-----FIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~---~r~~~~~~~-----~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      .+|||.-||-|.|+.-++..+. +|++++-|+.+-...+   +++......     .+++++++|....-     ...+.
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L-----~~~~~  150 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL-----RQPDN  150 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC-----CCHSS
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH-----hhcCC
Confidence            4899999999999998876665 8999999987655443   444432211     37899999986521     11468


Q ss_pred             cccEEEEcc
Q 018352          105 QADLVCCFQ  113 (357)
Q Consensus       105 ~FDlV~~~~  113 (357)
                      +||+|.+--
T Consensus       151 s~DVVY~DP  159 (234)
T PF04445_consen  151 SFDVVYFDP  159 (234)
T ss_dssp             --SEEEE--
T ss_pred             CCCEEEECC
Confidence            999998876

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=91.92  E-value=0.29  Score=42.81  Aligned_cols=104  Identities=16%  Similarity=0.119  Sum_probs=59.0

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHH-HHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGE-ARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~-A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      +.+++=+|...-..=...++.+.++++-++.++--+++ .+.|..             .+...++........++||.++
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s-------------si~p~df~~~~~~y~~~fD~~a   68 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS-------------SILPVDFAKNWQKYAGSFDFAA   68 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc-------------cccHHHHHHHHHHhhccchhhh
Confidence            45677777765422222334577788888877533221 111111             1111122222223467899999


Q ss_pred             Eccchhhc--------cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          111 CFQHLQMC--------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       111 ~~~~lh~~--------fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |..++.+.        .....+ .+.+.++.++|||||.+++.+|=.
T Consensus        69 s~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~vPvG  114 (177)
T PF03269_consen   69 SFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGVPVG  114 (177)
T ss_pred             eechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEeecC
Confidence            98876442        111222 356788999999999999987654

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=91.77  E-value=0.14  Score=41.69  Aligned_cols=32  Identities=25%  Similarity=0.205  Sum_probs=22.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCC
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVA   63 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS   63 (357)
                      +.....|||||+| .+...+....-.=.|+|.-
T Consensus        58 ~~~~FVDlGCGNG-LLV~IL~~EGy~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNG-LLVYILNSEGYPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCch-HHHHHHHhCCCCccccccc
Confidence            3567999999999 5555555533366788874

; GO: 0008168 methyltransferase activity

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=91.63  E-value=0.45  Score=46.49  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=75.6

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHH-------HHHhHhcCC-CceeEEEEcCCCCCchhhhhh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEA-------RDTWENQRK-NFIAEFFEADPCAENFETQMQ  100 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A-------~~r~~~~~~-~~~v~f~~~D~~~~~~~~~l~  100 (357)
                      +.+|.-|+|==.|||+.+...+.-+. .|+|.||+-.++...       +..+++.+. ..-+.+..+|....+++.   
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs---  281 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS---  281 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh---
Confidence            35789999999999988876655454 899999998888732       122332221 223567888888877753   


Q ss_pred             hcCCcccEEEEccc-------------------------hhhccCC----HHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          101 EKANQADLVCCFQH-------------------------LQMCFET----EERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       101 ~~~~~FDlV~~~~~-------------------------lh~~fes----~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                        ...||.|+|--.                         -||--..    ..-....|.-.++.|.-||++++..|-.
T Consensus       282 --n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~  357 (421)
T KOG2671|consen  282 --NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI  357 (421)
T ss_pred             --cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence              467999998321                         1110000    1112346777789999999999987744

>PHA01634 hypothetical protein

Probab=91.56  E-value=0.51  Score=39.76  Aligned_cols=47  Identities=4%  Similarity=-0.193  Sum_probs=40.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~   77 (357)
                      .+.+|+|||.+-|..+..++..+.+.|++++.++...+..++..+.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence            57899999999997777887889999999999999999888876544

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=91.40  E-value=0.15  Score=48.70  Aligned_cols=96  Identities=20%  Similarity=0.042  Sum_probs=67.4

Q ss_pred             CCCEEEEECCCCChhHH-HHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~-k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .+..|.|+-.|-|.++. .+..++.+.|+++|.++.+++..++..+.++..++...+.+|.....+       ....|-|
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~-------~~~AdrV  266 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP-------RLRADRV  266 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc-------cccchhe
Confidence            56899999999998887 667778999999999999999998888776544455566677655433       5677777


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGY  141 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~  141 (357)
                      ....    .-.+++..    -.+.++|||.|-
T Consensus       267 nLGL----lPSse~~W----~~A~k~Lk~egg  290 (351)
T KOG1227|consen  267 NLGL----LPSSEQGW----PTAIKALKPEGG  290 (351)
T ss_pred             eecc----ccccccch----HHHHHHhhhcCC
Confidence            5433    22233333    334567887443

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=91.29  E-value=0.24  Score=51.62  Aligned_cols=106  Identities=18%  Similarity=0.182  Sum_probs=61.2

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cC
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~  103 (357)
                      |+.+...||||||..|+.+.-..+. + .+-|+|+|+-+--         -   ..++.-.+.|++.......+..  ..
T Consensus        41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik---------p---~~~c~t~v~dIttd~cr~~l~k~l~t  108 (780)
T KOG1098|consen   41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK---------P---IPNCDTLVEDITTDECRSKLRKILKT  108 (780)
T ss_pred             cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc---------c---CCccchhhhhhhHHHHHHHHHHHHHh
Confidence            4568889999999999776655443 3 4579999997531         0   1133334455544332221111  12


Q ss_pred             CcccEEEEccc-------hhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          104 NQADLVCCFQH-------LQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~-------lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      -+.|+|+.-.+       .|-+|....-.-..|+-+...|..||.|+--
T Consensus       109 ~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtk  157 (780)
T KOG1098|consen  109 WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTK  157 (780)
T ss_pred             CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence            34577765332       2223322233345677788899999997643

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=91.18  E-value=0.41  Score=48.87  Aligned_cols=111  Identities=18%  Similarity=0.246  Sum_probs=65.7

Q ss_pred             CEEEEECCCCChhHHHHHHhcCC--eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           33 VTVCDLYCGAGVDVDKWETALIA--NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~~--~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ..|+|+..|.||++..+...+.-  +|+-+ ..+..|...-+|    ++   +- +-.|.++ .|..    -+.+||+|-
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----GL---IG-~yhDWCE-~fsT----YPRTYDLlH  432 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----GL---IG-VYHDWCE-AFST----YPRTYDLLH  432 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----cc---ch-hccchhh-ccCC----CCcchhhee
Confidence            57999999999999888665531  22222 222222222111    10   00 1223222 2211    368999998


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhH
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNV  160 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~  160 (357)
                      +...+-. ..+.-....+|-++-|+|+|||.+|+-  |...++.++++..
T Consensus       433 A~~lfs~-~~~rC~~~~illEmDRILRP~G~~iiR--D~~~vl~~v~~i~  479 (506)
T PF03141_consen  433 ADGLFSL-YKDRCEMEDILLEMDRILRPGGWVIIR--DTVDVLEKVKKIA  479 (506)
T ss_pred             hhhhhhh-hcccccHHHHHHHhHhhcCCCceEEEe--ccHHHHHHHHHHH
Confidence            7764433 334556778899999999999998864  5555666666543

; GO: 0008168 methyltransferase activity

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=91.09  E-value=2  Score=42.13  Aligned_cols=98  Identities=15%  Similarity=0.062  Sum_probs=61.7

Q ss_pred             CCCEEEEECCCCChhH-HHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc-CCccc
Q 018352           31 PYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l-~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~-~~~FD  107 (357)
                      ++.+|+=+|||.=|.+ ..+++. +.++|+.+|.+++-++.|++.....       .+.-.............. ...+|
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-------~~~~~~~~~~~~~~~~~t~g~g~D  240 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-------VVVNPSEDDAGAEILELTGGRGAD  240 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-------EeecCccccHHHHHHHHhCCCCCC
Confidence            4459999999974444 455554 6789999999999999998865332       111111101110011111 23699


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+-.-+          ....+..+.+++++||.+...
T Consensus       241 ~vie~~G----------~~~~~~~ai~~~r~gG~v~~v  268 (350)
T COG1063         241 VVIEAVG----------SPPALDQALEALRPGGTVVVV  268 (350)
T ss_pred             EEEECCC----------CHHHHHHHHHHhcCCCEEEEE
Confidence            9875443          122678888899999998866

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=91.04  E-value=2.4  Score=40.34  Aligned_cols=99  Identities=17%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh-hhcCCcc
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l-~~~~~~F  106 (357)
                      +.++.+||..|||. |..+..+++....++++++.+++..+.+++.-        +..+..+ ........+ ....+.+
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g--------~~~~~~~-~~~~~~~~~~~~~~~~~  233 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG--------ADEVLNS-LDDSPKDKKAAGLGGGF  233 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC--------CCEEEcC-CCcCHHHHHHHhcCCCc
Confidence            35678999988763 66666777765567999999999887774421        1111111 111111111 1124679


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|+.....          ...++.+.+.|+++|.++...
T Consensus       234 D~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         234 DVIFDFVGT----------QPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             eEEEECCCC----------HHHHHHHHHHhhcCCEEEEEC
Confidence            998754311          135677889999999998763

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=91.01  E-value=0.43  Score=48.30  Aligned_cols=109  Identities=13%  Similarity=0.069  Sum_probs=66.0

Q ss_pred             CCEEEEECCCCChhHHHHH---HhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCccc
Q 018352           32 YVTVCDLYCGAGVDVDKWE---TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~---~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FD  107 (357)
                      ...++|+|.|.|.......   ......|+.||-|..|+.++....++. ......++...+....+   ++. ....||
T Consensus       201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~-~~~g~~~v~~~~~~r~~---~pi~~~~~yD  276 (491)
T KOG2539|consen  201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDG-SHIGEPIVRKLVFHRQR---LPIDIKNGYD  276 (491)
T ss_pred             hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcCh-hhcCchhccccchhccc---CCCCccccee
Confidence            4578889888763322111   123557999999999999988876651 01111111111111111   111 246699


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHH-hcccCCcEEEEE
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVS-SLLKPGGYFLGI  145 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~-~~LkpGG~fi~t  145 (357)
                      +|+|.+.+|. +.+........++.. +..++||+++++
T Consensus       277 lvi~ah~l~~-~~s~~~R~~v~~s~~r~~~r~g~~lViI  314 (491)
T KOG2539|consen  277 LVICAHKLHE-LGSKFSRLDVPESLWRKTDRSGYFLVII  314 (491)
T ss_pred             eEEeeeeeec-cCCchhhhhhhHHHHHhccCCCceEEEE
Confidence            9999999998 656555555566555 566788888877

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=90.65  E-value=1.6  Score=45.15  Aligned_cols=105  Identities=18%  Similarity=0.190  Sum_probs=63.3

Q ss_pred             CCCEEEEECCCCCh-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC-------------chh
Q 018352           31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-------------NFE   96 (357)
Q Consensus        31 ~~~~VLDlGCG~G~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~-------------~~~   96 (357)
                      ++.+|+=+|||.=| .+...++.-...|+++|.+++-++++++.        .++|...|....             .+.
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl--------GA~~v~i~~~e~~~~~~gya~~~s~~~~  235 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM--------GAEFLELDFEEEGGSGDGYAKVMSEEFI  235 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--------CCeEEEeccccccccccchhhhcchhHH
Confidence            57899999999754 44455555344899999999999888763        223332222111             110


Q ss_pred             h----hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352           97 T----QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus        97 ~----~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      .    .+......+|+|+..-....    ......+.++..+.+||||.++....
T Consensus       236 ~~~~~~~~~~~~gaDVVIetag~pg----~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        236 KAEMALFAEQAKEVDIIITTALIPG----KPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHHHhccCCCCEEEECCCCCc----ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            0    01111246999987653211    11122335888899999999886643

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.34  E-value=2.7  Score=33.75  Aligned_cols=95  Identities=16%  Similarity=0.146  Sum_probs=58.5

Q ss_pred             CCCChhHHHHHH---hcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchh
Q 018352           40 CGAGVDVDKWET---ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQ  116 (357)
Q Consensus        40 CG~G~~l~k~~~---~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh  116 (357)
                      ||.|......++   .....|+.+|.+++.++.+++..        ..++.+|..+........  -...|.|++..   
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--------~~~i~gd~~~~~~l~~a~--i~~a~~vv~~~---   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--------VEVIYGDATDPEVLERAG--IEKADAVVILT---   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--------SEEEES-TTSHHHHHHTT--GGCESEEEEES---
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--------cccccccchhhhHHhhcC--ccccCEEEEcc---
Confidence            344444443333   34448999999999988776552        568999998866544332  25688777643   


Q ss_pred             hccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352          117 MCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (357)
Q Consensus       117 ~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~  151 (357)
                         .+ +.....+-...+.+.|...++....+.+.
T Consensus        71 ---~~-d~~n~~~~~~~r~~~~~~~ii~~~~~~~~  101 (116)
T PF02254_consen   71 ---DD-DEENLLIALLARELNPDIRIIARVNDPEN  101 (116)
T ss_dssp             ---SS-HHHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred             ---CC-HHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence               12 23334445555777788888888777644

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=89.84  E-value=1.3  Score=45.63  Aligned_cols=119  Identities=18%  Similarity=0.136  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHcCCC----CCEEEEECCCCChhHHHHHHh-----cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEc
Q 018352           18 EFAKTALIKIYSHP----YVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA   88 (357)
Q Consensus        18 nwvks~Li~~~~~~----~~~VLDlGCG~G~~l~k~~~~-----~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~   88 (357)
                      .-|...|+.+....    ...|+=+|.|.|-...+-+++     ..-++++++-++.++...+.+-- .....+++.+..
T Consensus       350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~-~~W~~~Vtii~~  428 (649)
T KOG0822|consen  350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF-ECWDNRVTIISS  428 (649)
T ss_pred             HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch-hhhcCeeEEEec
Confidence            33445555553221    346788899999666555443     33479999999999887766321 122347999999


Q ss_pred             CCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        89 D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+....-      +..+.|++++-. +. +|.+-+--.+.|.-+.+.|||.|+.|=.
T Consensus       429 DMR~w~a------p~eq~DI~VSEL-LG-SFGDNELSPECLDG~q~fLkpdgIsIP~  477 (649)
T KOG0822|consen  429 DMRKWNA------PREQADIIVSEL-LG-SFGDNELSPECLDGAQKFLKPDGISIPS  477 (649)
T ss_pred             cccccCC------chhhccchHHHh-hc-cccCccCCHHHHHHHHhhcCCCceEccc
Confidence            9987542      347899986521 22 3545455556789999999999988743

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=89.62  E-value=0.71  Score=46.46  Aligned_cols=55  Identities=16%  Similarity=0.034  Sum_probs=42.3

Q ss_pred             CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEE
Q 018352           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFE   87 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~   87 (357)
                      ..|||||.|||-.......++...+++++.=..|.+.|++....++...++.++.
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn  122 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVIN  122 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence            4699999999944444445577889999999999999999887766555555543

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=89.49  E-value=2.6  Score=38.07  Aligned_cols=105  Identities=13%  Similarity=0.122  Sum_probs=73.1

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-----cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc-CC
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-AN  104 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-----~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~-~~  104 (357)
                      +...|+++|.-.||.+...+..     ...+|+++||+-..++-+..+      ..++.|++++.....+..+.... .+
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~~~~  142 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRLKNE  142 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence            3578999999999888766553     235899999997665544333      12789999998887765544322 23


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .--+-.|-.+.|.    .+...+-|+-...+|..|-|++..
T Consensus       143 y~kIfvilDsdHs----~~hvLAel~~~~pllsaG~Y~vVe  179 (237)
T COG3510         143 YPKIFVILDSDHS----MEHVLAELKLLAPLLSAGDYLVVE  179 (237)
T ss_pred             CCcEEEEecCCch----HHHHHHHHHHhhhHhhcCceEEEe
Confidence            3344456666665    355667788888999999988866

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=89.19  E-value=3.7  Score=42.44  Aligned_cols=114  Identities=12%  Similarity=0.083  Sum_probs=66.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-----cCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhhcCC
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-----~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      +...|.|.+||+|+.+......     ....++|.+....+...|+....-+... .......+|....+..  .  ...
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~--~--~~~  292 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEW--E--NEN  292 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccc--c--ccc
Confidence            5579999999999988764331     2246999999999999988764222111 0122223443332110  0  124


Q ss_pred             cccEEEEccch--hh------------------ccCC-HHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          105 QADLVCCFQHL--QM------------------CFET-EERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       105 ~FDlV~~~~~l--h~------------------~fes-~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +||+|+++-.+  .+                  ++.+ ...-..++..+...|++||......|+
T Consensus       293 ~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~  357 (501)
T TIGR00497       293 GFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFP  357 (501)
T ss_pred             cCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecC
Confidence            57777654311  10                  0111 122356888899999999987666554

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=89.18  E-value=2.5  Score=37.44  Aligned_cols=98  Identities=15%  Similarity=0.201  Sum_probs=55.9

Q ss_pred             CCC-EEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHhcCC--CceeEEEEcCCCCCchhhhhhhc--
Q 018352           31 PYV-TVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQMQEK--  102 (357)
Q Consensus        31 ~~~-~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~~~~--~~~v~f~~~D~~~~~~~~~l~~~--  102 (357)
                      ++. .|+-||||-  ++..|...   +..+++-+|..+ +++.-+++++....  ..+.+++.+|+.+..+...+...  
T Consensus        77 ~~~~qvV~LGaGl--DTr~~Rl~~~~~~~~~~evD~p~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~  153 (183)
T PF04072_consen   77 PGARQVVNLGAGL--DTRAYRLDNPAGGVRWFEVDLPE-VIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGF  153 (183)
T ss_dssp             TTESEEEEET-TT----HHHHHHHTTTTEEEEEEE-HH-HHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT
T ss_pred             CCCcEEEEcCCCC--CchHHHhhccccceEEEEeCCHH-HHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCC
Confidence            444 899999996  44443322   234566666644 34444444433211  11356799999886665555432  


Q ss_pred             -CCcccEEEEccchhhccCCHHHHHHHHHHHH
Q 018352          103 -ANQADLVCCFQHLQMCFETEERARRLLQNVS  133 (357)
Q Consensus       103 -~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~  133 (357)
                       ...--++++-.++.| + +.++...+|+.++
T Consensus       154 ~~~~ptl~i~Egvl~Y-l-~~~~~~~ll~~ia  183 (183)
T PF04072_consen  154 DPDRPTLFIAEGVLMY-L-SPEQVDALLRAIA  183 (183)
T ss_dssp             -TTSEEEEEEESSGGG-S--HHHHHHHHHHH-
T ss_pred             CCCCCeEEEEcchhhc-C-CHHHHHHHHHHhC
Confidence             345667888888999 6 6777888888763

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=89.08  E-value=0.67  Score=44.93  Aligned_cols=70  Identities=14%  Similarity=0.027  Sum_probs=50.0

Q ss_pred             EEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccc
Q 018352           35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQH  114 (357)
Q Consensus        35 VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~  114 (357)
                      |+||-||.|+...-+..+++.-+.++|+++.+++.-+.++..       .++.+|+.+.....     -..+|+++..+-
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~-----~~~~dvl~gg~P   68 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSD-----IPDFDILLGGFP   68 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhh-----CCCcCEEEecCC
Confidence            689999999999998888887778999999888766655432       34567776643311     235899986554


Q ss_pred             hh
Q 018352          115 LQ  116 (357)
Q Consensus       115 lh  116 (357)
                      .+
T Consensus        69 Cq   70 (315)
T TIGR00675        69 CQ   70 (315)
T ss_pred             Cc
Confidence            33

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=88.56  E-value=2.6  Score=40.77  Aligned_cols=95  Identities=12%  Similarity=0.114  Sum_probs=56.9

Q ss_pred             CCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++.+||=.|||. |..+..+++. +..+++++|.+++-++.|++.-. .      .+  .|..+.++..... ..+.+|+
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa-~------~v--i~~~~~~~~~~~~-~~g~~D~  238 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGA-D------KL--VNPQNDDLDHYKA-EKGYFDV  238 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCC-c------EE--ecCCcccHHHHhc-cCCCCCE
Confidence            678999999863 3344555555 45579999999998888765311 1      11  1211112211111 1245999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+...+      +    ...+..+.++|++||+++..
T Consensus       239 vid~~G------~----~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        239 SFEVSG------H----PSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             EEECCC------C----HHHHHHHHHHhhcCCEEEEE
Confidence            875432      1    12456677789999999876

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=88.32  E-value=8  Score=37.26  Aligned_cols=124  Identities=16%  Similarity=0.150  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcC--CeEEEEeCChHHHHHHHHHhHhcCC--CceeEEEEcCCCC
Q 018352           17 YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCA   92 (357)
Q Consensus        17 ~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~--~~v~GiDiS~~~l~~A~~r~~~~~~--~~~v~f~~~D~~~   92 (357)
                      .++++..+...    -..|+-||||-  |+..+--...  .+|+-+|.= +.++.=++.+++...  .-...++.+|+..
T Consensus        82 D~~~~~~~~~g----~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~P-evi~~K~~~l~e~~~~~~~~~~~Va~Dl~~  154 (297)
T COG3315          82 DDFVRAALDAG----IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDLP-EVIEFKKKLLAERGATPPAHRRLVAVDLRE  154 (297)
T ss_pred             HHHHHHHHHhc----ccEEEEecccc--ccceeecCCCCCCeEEECCCc-HHHHHHHHHhhhcCCCCCceEEEEeccccc
Confidence            34555444332    36899999985  4544432222  355555553 333333334444321  2257899999987


Q ss_pred             Cchhhhhhh---cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           93 ENFETQMQE---KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        93 ~~~~~~l~~---~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .+....+..   ....--++++-..+.| | +++...++|++|...+.||-.++...+..
T Consensus       155 ~dw~~~L~~~G~d~~~pt~~iaEGLl~Y-L-~~~~v~~ll~~I~~~~~~gS~~~~~~~~~  212 (297)
T COG3315         155 DDWPQALAAAGFDRSRPTLWIAEGLLMY-L-PEEAVDRLLSRIAALSAPGSRVAFDYSLP  212 (297)
T ss_pred             cchHHHHHhcCCCcCCCeEEEecccccc-C-CHHHHHHHHHHHHHhCCCCceEEEecccc
Confidence            766555542   1244556788888989 6 68889999999999999999988886633

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=87.74  E-value=1.6  Score=42.44  Aligned_cols=77  Identities=14%  Similarity=0.156  Sum_probs=55.0

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      ..+++||.||.|+.-.-+..+++.-+.++|+++.+++.-+.++..      ..++..|+....... +  ....+|+++.
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~-~--~~~~~Dvlig   73 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEA-L--RKSDVDVLIG   73 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhh-c--cccCCCEEEe
Confidence            468999999999999888888988899999999988766555542      345667765533211 0  1117999997


Q ss_pred             ccchhh
Q 018352          112 FQHLQM  117 (357)
Q Consensus       112 ~~~lh~  117 (357)
                      .+-.+.
T Consensus        74 GpPCQ~   79 (328)
T COG0270          74 GPPCQD   79 (328)
T ss_pred             CCCCcc
Confidence            765554

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=87.00  E-value=1.3  Score=41.37  Aligned_cols=59  Identities=5%  Similarity=0.035  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHcCCC-CCEEEEECCCCChhHHHHHHh---------cCCeEEEEeCChHHHHHHHHHhHh
Q 018352           18 EFAKTALIKIYSHP-YVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWEN   76 (357)
Q Consensus        18 nwvks~Li~~~~~~-~~~VLDlGCG~G~~l~k~~~~---------~~~~v~GiDiS~~~l~~A~~r~~~   76 (357)
                      +|+-..+.....+. ..+|+|+|.|+|..+.-++..         ...+|+-||+|+.+.+.-++++..
T Consensus         4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen    4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            55555554443333 379999999999877666553         235899999999998888887755

; PDB: 4F3N_A 1ZKD_B.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=86.55  E-value=1  Score=42.84  Aligned_cols=55  Identities=16%  Similarity=-0.008  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHH
Q 018352           14 HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG   68 (357)
Q Consensus        14 ~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~   68 (357)
                      ..+-+.++..+-.+..-.+.+|||+|||.|-.-......+...+...|+|.+.++
T Consensus        99 ~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen   99 VDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             HHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            3444555544334444578899999999996555555556578899999988774

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=84.39  E-value=12  Score=33.96  Aligned_cols=98  Identities=23%  Similarity=0.206  Sum_probs=60.0

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh-hhcCCccc
Q 018352           30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l-~~~~~~FD  107 (357)
                      .++.+||..|+|. |..+..+++....++++++.+++..+.+++...      . .+  .|.........+ ....+.+|
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~------~-~~--~~~~~~~~~~~~~~~~~~~~d  203 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA------D-HV--IDYKEEDLEEELRLTGGGGAD  203 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC------c-ee--ccCCcCCHHHHHHHhcCCCCC
Confidence            5688999999985 656666666655799999999887777644311      0 11  121111121111 11246799


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +|+....      ..    ..+..+.+.|+++|.++...
T Consensus       204 ~vi~~~~------~~----~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         204 VVIDAVG------GP----ETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             EEEECCC------CH----HHHHHHHHhcccCCEEEEEc
Confidence            9976431      11    24566778899999998663

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=84.05  E-value=2.4  Score=36.64  Aligned_cols=109  Identities=15%  Similarity=0.039  Sum_probs=49.8

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +......-|||+|=|+|+.-..+-.. +..+++.+|-.-.+       ..+.. ...-.++.+|+... +.. +.....+
T Consensus        24 ~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~-------hp~~~-P~~~~~ilGdi~~t-l~~-~~~~g~~   93 (160)
T PF12692_consen   24 QVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALAC-------HPSST-PPEEDLILGDIRET-LPA-LARFGAG   93 (160)
T ss_dssp             HTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S--------GGG----GGGEEES-HHHH-HHH-HHHH-S-
T ss_pred             HhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeeccc-------CCCCC-CchHheeeccHHHH-hHH-HHhcCCc
Confidence            33445578999999999888777665 66789999965221       11100 01224677776431 111 1112334


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .-++-+-++.|+--.+...+..+---|..+|.|||+++-.
T Consensus        94 a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~  133 (160)
T PF12692_consen   94 AALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG  133 (160)
T ss_dssp             EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             eEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence            4455555555551111122333444567899999988744

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=83.34  E-value=20  Score=32.24  Aligned_cols=32  Identities=16%  Similarity=0.077  Sum_probs=23.9

Q ss_pred             CCEEEEECCCC-ChhHH-HHHHhcCCeEEEEeCC
Q 018352           32 YVTVCDLYCGA-GVDVD-KWETALIANYIGIDVA   63 (357)
Q Consensus        32 ~~~VLDlGCG~-G~~l~-k~~~~~~~~v~GiDiS   63 (357)
                      +.+||=+|||. |..+. .+...+.++++.+|.+
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            57899999994 54444 4445588899999976

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=81.60  E-value=4.8  Score=41.15  Aligned_cols=116  Identities=16%  Similarity=0.047  Sum_probs=69.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh---hhcCCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM---QEKANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l---~~~~~~F  106 (357)
                      ....+|-+|-|.|+....+..+ +...++++.+.++|++.|+..+.-.... +..+.-.|...  +....   ...+..|
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~--~~~~~~k~~~~~~~~  371 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLD--FLQRTAKSQQEDICP  371 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchH--HHHHHhhccccccCC
Confidence            3457888888888666555443 5579999999999999998865321110 22333333321  11111   1135678


Q ss_pred             cEEEEccc---hhhc--cCCHHHHHHHHHHHHhcccCCcEEEEE--eCCc
Q 018352          107 DLVCCFQH---LQMC--FETEERARRLLQNVSSLLKPGGYFLGI--TPDS  149 (357)
Q Consensus       107 DlV~~~~~---lh~~--fes~~~~~~~L~~i~~~LkpGG~fi~t--~pd~  149 (357)
                      |++...-.   .|-+  -...=-++.+|..+...|.|-|.|++-  ++|+
T Consensus       372 dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~  421 (482)
T KOG2352|consen  372 DVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS  421 (482)
T ss_pred             cEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence            88764210   2211  111223678999999999999999876  4444

>PRK10458 DNA cytosine methylase; Provisional

Probab=81.03  E-value=5.1  Score=41.14  Aligned_cols=60  Identities=13%  Similarity=0.102  Sum_probs=42.5

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~   94 (357)
                      ..+++|+-||.||...-+..+++..+.++|+++.+.+.-+.++...   .....+..|+....
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~  147 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDIT  147 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCc
Confidence            4599999999999999988888877889999988766554443211   12334556665543

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=80.88  E-value=9.8  Score=36.12  Aligned_cols=101  Identities=11%  Similarity=0.079  Sum_probs=56.5

Q ss_pred             CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcC------------C-CCCchhhh
Q 018352           33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD------------P-CAENFETQ   98 (357)
Q Consensus        33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D------------~-~~~~~~~~   98 (357)
                      .+|.=||||. |..+...+.....+|+++|.+++.++.++++++............+.            + ...+. . 
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~-   81 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E-   81 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H-
Confidence            3688889995 43333333333348999999999999877654431000000000000            0 00011 0 


Q ss_pred             hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus        99 l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                         .-...|+|+..-     .+..+..+.+++++...++++..++
T Consensus        82 ---~~~~aDlVieav-----~e~~~~k~~~~~~l~~~~~~~~il~  118 (291)
T PRK06035         82 ---SLSDADFIVEAV-----PEKLDLKRKVFAELERNVSPETIIA  118 (291)
T ss_pred             ---HhCCCCEEEEcC-----cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence               124578887643     4455556788999999998877654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=80.86  E-value=14  Score=38.68  Aligned_cols=100  Identities=10%  Similarity=0.000  Sum_probs=61.4

Q ss_pred             CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      .+|+=+|||. |..+.+.+......|+.+|.+++.++.+++.        ....+.+|+++.......  .-+..|.|++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a--~i~~a~~viv  487 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLA--HLDCARWLLL  487 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhc--CccccCEEEE
Confidence            5778888886 4455555444445899999999988877642        356799999886543221  2357887654


Q ss_pred             ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .-      .+.++.......+ +.+.|.-..+...-+.
T Consensus       488 ~~------~~~~~~~~iv~~~-~~~~~~~~iiar~~~~  518 (558)
T PRK10669        488 TI------PNGYEAGEIVASA-REKRPDIEIIARAHYD  518 (558)
T ss_pred             Ec------CChHHHHHHHHHH-HHHCCCCeEEEEECCH
Confidence            32      1222222333333 4456777777665554

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=80.75  E-value=16  Score=38.79  Aligned_cols=103  Identities=12%  Similarity=0.035  Sum_probs=67.0

Q ss_pred             CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      .+|+=+|+|. |..+.+.+......|+.+|.+++.++.+++.        ....+.+|+++.......  .-...|+|++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~a--gi~~A~~vv~  470 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAA--GAEKAEAIVI  470 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhc--CCccCCEEEE
Confidence            5788888886 4444555555555899999999998877542        346799999886543221  2356888776


Q ss_pred             ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      ..      .+.+........ .+.+.|...++...-|.+..
T Consensus       471 ~~------~d~~~n~~i~~~-~r~~~p~~~IiaRa~~~~~~  504 (601)
T PRK03659        471 TC------NEPEDTMKIVEL-CQQHFPHLHILARARGRVEA  504 (601)
T ss_pred             Ee------CCHHHHHHHHHH-HHHHCCCCeEEEEeCCHHHH
Confidence            33      233434344443 45577888888887776544

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=80.66  E-value=4.5  Score=32.92  Aligned_cols=84  Identities=23%  Similarity=0.296  Sum_probs=53.8

Q ss_pred             ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc--CCcccEEEEccchhhccC
Q 018352           43 GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--ANQADLVCCFQHLQMCFE  120 (357)
Q Consensus        43 G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~--~~~FDlV~~~~~lh~~fe  120 (357)
                      |..+..+++....+++++|.++.-++.+++.-..       .+  .|....++.+.+...  ...+|+|+-..+      
T Consensus         3 G~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~-------~~--~~~~~~~~~~~i~~~~~~~~~d~vid~~g------   67 (130)
T PF00107_consen    3 GLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD-------HV--IDYSDDDFVEQIRELTGGRGVDVVIDCVG------   67 (130)
T ss_dssp             HHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES-------EE--EETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred             HHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc-------cc--ccccccccccccccccccccceEEEEecC------
Confidence            5556666666448999999999998888664311       12  222333343333222  247999975442      


Q ss_pred             CHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          121 TEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       121 s~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +    ...++...++|++||.++..
T Consensus        68 ~----~~~~~~~~~~l~~~G~~v~v   88 (130)
T PF00107_consen   68 S----GDTLQEAIKLLRPGGRIVVV   88 (130)
T ss_dssp             S----HHHHHHHHHHEEEEEEEEEE
T ss_pred             c----HHHHHHHHHHhccCCEEEEE
Confidence            1    23577788899999999877

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=80.13  E-value=9.1  Score=37.85  Aligned_cols=61  Identities=10%  Similarity=0.028  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh---------cCCeEEEEeCChHHHHHHHHHhHhc
Q 018352           17 YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWENQ   77 (357)
Q Consensus        17 ~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~---------~~~~v~GiDiS~~~l~~A~~r~~~~   77 (357)
                      -.|+...+-+.-.+....+++||.|+|..+.-+++.         ...+|.-|++|++..+.-+++.+..
T Consensus        63 a~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          63 AEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            366555443333445678999999999776655543         3568999999999988777776543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=80.06  E-value=17  Score=38.66  Aligned_cols=103  Identities=14%  Similarity=0.054  Sum_probs=65.7

Q ss_pred             CCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        32 ~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ..+|+=+|||. |..+...+......++.+|.+++.++.+++.        ....+.+|+++.+.....  .-...|+|+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~a--gi~~A~~vv  469 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESA--GAAKAEVLI  469 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhc--CCCcCCEEE
Confidence            46899999996 4445455555445899999999998887542        346799999886553211  235788877


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~  151 (357)
                      +..      .+.+.-..... ..+.+.|.-..+...-|.+.
T Consensus       470 v~~------~d~~~n~~i~~-~ar~~~p~~~iiaRa~d~~~  503 (621)
T PRK03562        470 NAI------DDPQTSLQLVE-LVKEHFPHLQIIARARDVDH  503 (621)
T ss_pred             EEe------CCHHHHHHHHH-HHHHhCCCCeEEEEECCHHH
Confidence            643      23333333333 44456677777777766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	357
3bgv_A	313	Crystal Structure Of Mrna Cap Guanine-N7 Methyltran		3e-17
1ri1_A	298	Structure And Mechanism Of Mrna Cap (Guanine N-7) M		4e-16

>pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sah Length = 313

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 23/220 (10%)
Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN------FIAEFF 86
           +TV DL CG G D+ KW+   I   +  D+A   + + +  +E+ +        F AEF 
Sbjct: 36  ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFI 95
Query: 87  EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
            AD   E    + ++     D+  C       FE+ E+A  +L+N    L PGGYF+G T
Sbjct: 96  TADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT 155
Query: 147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKF 206
           P+S  +     + +EA    S             +E Y + F+ ++  +PLFG KY    
Sbjct: 156 PNSFELI----RRLEASETES-----------FGNEIYTVKFQ-KKGDYPLFGCKYDFNL 199
Query: 207 ANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
              +    + LV+FP L  +A++  ++ V  +   EFY++
Sbjct: 200 EGVVDV-PEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEE 238

>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7) Methyltransferase Length = 298

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 35/276 (12%)
Query: 19  FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR 78
           F K  LI++Y+    +V DL CG G D+ K+E A I  Y G+D+A   I +AR    N +
Sbjct: 52  FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 111
Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138
           + F   F   D    + +        + D++         F T E      +N++  L+P
Sbjct: 112 RRFKVFFRAQDSYGRHMDL-----GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRP 166
Query: 139 GGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLF 198
           GGYF+   P    I  +Y++                    + ++ Y I  E + E  P+ 
Sbjct: 167 GGYFIMTVPSRDVILERYKQGR------------------MSNDFYKIELE-KMEDVPME 207
Query: 199 G-KKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMS 257
             ++Y+    + ++   +  V F  ++   +  GL  VE +   +FY+D           
Sbjct: 208 SVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDE--------GR 259
Query: 258 AGPNLIDPRGR--LLPRSYDVLGLYSTFIFQKPDPD 291
             P L    G   L     +V+G+Y   +F+K  P+
Sbjct: 260 RNPELSKKMGLGCLTREESEVVGIYEVVVFRKLVPE 295

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	357
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	1e-63
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	2e-51
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	2e-47
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	1e-09
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	2e-09
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	1e-08
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	1e-08
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	1e-07
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-07
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	4e-06
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	6e-06
3ocj_A	305	Putative exported protein; structural genomics, PS	8e-06
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	1e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-05
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	2e-05
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	7e-05
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	8e-05
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	1e-04
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	1e-04
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	1e-04
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	1e-04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	2e-04
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-04
3lcc_A	235	Putative methyl chloride transferase; halide methy	3e-04
2p7i_A	250	Hypothetical protein; putative methyltransferase,	7e-04
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	8e-04
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	9e-04

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score =  203 bits (518), Expect = 1e-63
 Identities = 67/285 (23%), Positives = 117/285 (41%), Gaps = 30/285 (10%)

Query: 8   RSELTHHR-LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSG 66
           RS+  + R    F K  LI++Y+    +V DL CG G D+ K+E A I  Y G+D+A   
Sbjct: 40  RSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVS 99

Query: 67  IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERAR 126
           I +AR    N ++ F   F   D    +      +   + D++         F T E   
Sbjct: 100 INDARVRARNMKRRFKVFFRAQDSYGRHM-----DLGKEFDVISSQFSFHYAFSTSESLD 154

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI 186
              +N++  L+PGGYF+   P    I  +Y++                    + ++ Y I
Sbjct: 155 IAQRNIARHLRPGGYFIMTVPSRDVILERYKQ------------------GRMSNDFYKI 196

Query: 187 TFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
             E  E+      ++Y+    + ++   +  V F  ++   +  GL  VE +   +FY+D
Sbjct: 197 ELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYED 256

Query: 247 NRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPD 291
                  +    G       G L     +V+G+Y   +F+K  P+
Sbjct: 257 EGRRNPELSKKMG------LGCLTREESEVVGIYEVVVFRKLVPE 295

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score =  172 bits (436), Expect = 2e-51
 Identities = 49/302 (16%), Positives = 99/302 (32%), Gaps = 40/302 (13%)

Query: 8   RSELTHHRLYEFAKTALIKIYSHPYV-------TVCDLYCGAGVDVDKWETALIANYIGI 60
           R+      L  + KT LI +Y             V  +  G G D++K+    IA  +  
Sbjct: 18  RTRGPLGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVAT 77

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEA-----DPCAENFETQMQEK--ANQADLVCCFQ 113
           D     I    + +         ++++         ++ F + ++E     + +++    
Sbjct: 78  DPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQF 137

Query: 114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPN 173
            +   F     A  ++ N+S L   GG  L  T D   +     K     H         
Sbjct: 138 AIHYSFHPRHYA-TVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHK-------- 188

Query: 174 LVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLE 233
              N   SE+Y+   ++ +++       Y     +    E   ++    ++R+  E G  
Sbjct: 189 ---NLPSSENYMSVEKIADDRI----VVYNPSTMSTPMTE--YIIKKNDIVRVFNEYGFV 239

Query: 234 YVEIQNLNEFYDDNRALFAGM-----LMSAGPNLIDPRGRLLPRSYD---VLGLYSTFIF 285
            V+  +     + ++    G        S        RG +     D   +L  Y  ++F
Sbjct: 240 LVDNVDFATIIERSKKFINGASTMEDRPSTRNFFELNRGAIKCEGLDVEDLLSYYVVYVF 299

Query: 286 QK 287
            K
Sbjct: 300 SK 301

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score =  162 bits (410), Expect = 2e-47
 Identities = 70/314 (22%), Positives = 120/314 (38%), Gaps = 62/314 (19%)

Query: 19  FAKTALIKIYSHPYV-------TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR 71
           + K+ LI  +            TV DL CG G D+ KW+   I   +  D+A   + + +
Sbjct: 15  WMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQ 74

Query: 72  DTWENQRKNFI------AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERA 125
             +E+ +          AEF  AD   E    + ++     D+  C       FE+ E+A
Sbjct: 75  QRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQA 134

Query: 126 RRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV 185
             +L+N    L PGGYF+G TP+S  +  + + +                     +E Y 
Sbjct: 135 DMMLRNACERLSPGGYFIGTTPNSFELIRRLEASET---------------ESFGNEIYT 179

Query: 186 ITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD 245
           + F+ ++  +PLFG KY       +    + LV+FP L  +A++  ++ V  +   EFY+
Sbjct: 180 VKFQ-KKGDYPLFGCKYDFNLEGVVDVP-EFLVYFPLLNEMAKKYNMKLVYKKTFLEFYE 237

Query: 246 D------NRALFAGM--------------------------LMSAGPNLIDPRGRLLPRS 273
           +      N+ L   M                                 +  P G L    
Sbjct: 238 EKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSE 297

Query: 274 YDVLGLYSTFIFQK 287
           ++   +Y  F F+K
Sbjct: 298 WEATSIYLVFAFEK 311

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 44/244 (18%), Positives = 78/244 (31%), Gaps = 55/244 (22%)

Query: 18  EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDT 73
           +F +    +        V DL CG G+      T  +A      +G+D+    +  AR  
Sbjct: 28  DFVEEIFKEDAKREVRRVLDLACGTGIP-----TLELAERGYEVVGLDLHEEMLRVARR- 81

Query: 74  WENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC----FQHLQMCFETEERARRLL 129
            + + +N   EF + D        +     N+ D V        +       EE  R+L 
Sbjct: 82  -KAKERNLKIEFLQGD--VLEIAFK-----NEFDAVTMFFSTIMYF-----DEEDLRKLF 128

Query: 130 QNVSSLLKPGGYFL-------GITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSE 182
             V+  LKPGG F+           D   +W + +   +        ++P +        
Sbjct: 129 SKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQ---KLRF 185

Query: 183 SYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNE 242
             ++       +   F    +L              + P  +RL  E   E V+I     
Sbjct: 186 KRLVQILRPNGEVKAFLVDDELNI------------YTPREVRLLAEKYFEKVKI----- 228

Query: 243 FYDD 246
            Y +
Sbjct: 229 -YGN 231

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 33/243 (13%), Positives = 72/243 (29%), Gaps = 48/243 (19%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDTWENQR 78
            L++  +    ++ D+ CG G                +  G++++   +  AR      +
Sbjct: 32  DLVRSRTPEASSLLDVACGTGTH-----LEHFTKEFGDTAGLELSEDMLTHAR------K 80

Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138
           +   A   + D    +F         +   V          +T E     + + +  L+P
Sbjct: 81  RLPDATLHQGD--MRDFRLG-----RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEP 133

Query: 139 GGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV---ITFEVEEEKF 195
           GG  +         +A    + +       ++    V + +R  +     + F V +   
Sbjct: 134 GGVVVVEPWWFPETFADGWVSADVVRRDGRTVA--RVSHSVREGNATRMEVHFTVADP-- 189

Query: 196 PLFGKKYQLKFANDISAETQCLVHFPS--LIRLAREAGLEYVEIQNLNEFYDD--NRALF 251
              GK  +        ++   +  F           AGL    +            R LF
Sbjct: 190 ---GKGVR------HFSDVHLITLFHQAEYEAAFTAAGLRVEYL------EGGPSGRGLF 234

Query: 252 AGM 254
            G+
Sbjct: 235 VGV 237

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 32/231 (13%), Positives = 66/231 (28%), Gaps = 43/231 (18%)

Query: 24  LIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDTWENQRK 79
                +  +    DL CG G       T  +     N   +D++   + EA +  + + +
Sbjct: 30  KCVENNLVFDDYLDLACGTGNL-----TENLCPKFKNTWAVDLSQEMLSEAEN--KFRSQ 82

Query: 80  NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG 139
                    D    N          + DL+ C           +  ++  + VS+ LK G
Sbjct: 83  GLKPRLACQD--ISNLNIN-----RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135

Query: 140 GYFLGITPDSSTIWAKYQKNVEAYHNRSSSM--KPNLVPNCIRSESYVITFEVEEEKFPL 197
           G F+        +      N   Y +       +     + +      I+F V +     
Sbjct: 136 GVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMY---ISFFVRD----- 187

Query: 198 FGKKYQLKFANDISAETQCLVHFPS--LIRLAREAGLEYVEIQNLNEFYDD 246
            G+ Y+         E      +    + +  +   L  ++        D 
Sbjct: 188 -GEFYK------RFDEEHEERAYKEEDIEKYLKHGQLNILDK------VDC 225

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 36/247 (14%), Positives = 66/247 (26%), Gaps = 56/247 (22%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA---NYIGIDVATSGIGEARDTWENQRK 79
           AL++ +S    ++ D+ CG G+ +      L        G++++   +  AR      R+
Sbjct: 42  ALVRRHSPKAASLLDVACGTGMHL----RHLADSFGTVEGLELSADMLAIAR------RR 91

Query: 80  NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG 139
           N  A     D    +F         +   V C          +      L+  ++ + P 
Sbjct: 92  NPDAVLHHGD--MRDFSLG-----RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPD 144

Query: 140 GYFL--------GITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191
           G  +          TP                    SS +              + + V 
Sbjct: 145 GVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEAT-------RIEVHYLVA 197

Query: 192 EEKFPLFGKKYQLKFANDISAETQCLVHFPS--LIRLAREAGLEYVEIQNLNEFYDD--N 247
                   +            E+  +  F      R    AGL    +            
Sbjct: 198 GP-----DRGIT------HHEESHRITLFTREQYERAFTAAGLSVEFM------PGGPSG 240

Query: 248 RALFAGM 254
           R LF G+
Sbjct: 241 RGLFTGL 247

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 38/234 (16%), Positives = 69/234 (29%), Gaps = 32/234 (13%)

Query: 10  ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY--IGIDVATSGI 67
           EL     Y      +++    P   + D+ CG G         L  +Y   G+D++   +
Sbjct: 13  ELMQDVPYPEWVAWVLEQV-EPGKRIADIGCGTGTAT----LLLADHYEVTGVDLSEEML 67

Query: 68  GEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARR 127
             A++  +    N   +F+  D      E          D +          +TE   ++
Sbjct: 68  EIAQE--KAMETNRHVDFWVQD--MRELELP-----EPVDAITILCDSLNYLQTEADVKQ 118

Query: 128 LLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSM----KPNLVPNCIRSES 183
              + + LL  GG  L        +   +     A H   SS      P   P  +  E 
Sbjct: 119 TFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHEL 178

Query: 184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
                  E+ ++    + +  +                  I   REAG     +
Sbjct: 179 TFFIEG-EDGRYDRVDETHHQR-----------TYPPEQYITWLREAGFRVCAV 220

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 6e-08
 Identities = 43/350 (12%), Positives = 94/350 (26%), Gaps = 102/350 (29%)

Query: 4   LPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVA 63
             + R +  + +L    + AL+++     V +  +  G+G    K  T +       DV 
Sbjct: 129 YNVSRLQP-YLKL----RQALLELRPAKNVLIDGVL-GSG----K--TWVAL-----DV- 170

Query: 64  TSGIGEARDTWENQRKNF------IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQM 117
                         + +F      +      +   E     +Q+   Q D     +    
Sbjct: 171 ------CLSYKVQCKMDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDPNWTSRSDHS 220

Query: 118 C------FETEERARRLLQN---VSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHN--- 165
                     +   RRLL++    + LL        +  +   +     K   A++    
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLL--------VLLN---VQNA--KAWNAFNLSCK 267

Query: 166 -----RSSSMKPNLVPNC---IRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCL 217
                R   +   L       I  + + +T    +E   L  K    +   D+  E    
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCR-PQDLPREV-LT 324

Query: 218 VHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVL 277
            + P  + +         +     + +                   D    ++  S +VL
Sbjct: 325 TN-PRRLSI---IAESIRDGLATWDNWKHVN--------------CDKLTTIIESSLNVL 366

Query: 278 ------GLYSTF-IFQKPDPDVAPPLAT-PLLQDNEEPGWRDDGQNVLAE 319
                  ++    +F         P     L+  +       D   V+ +
Sbjct: 367 EPAEYRKMFDRLSVFPP---SAHIPTILLSLIWFDVIK---SDVMVVVNK 410

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 26/229 (11%)

Query: 30  HPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEF 85
           H    V D+ CG GVD     + ++         +D +   +  A     N+RK    + 
Sbjct: 56  HGCHRVLDVACGTGVD-----SIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDK 110

Query: 86  FEADPCAENFETQMQEKANQADLVCC----FQHLQMCFETEERARRLLQNVSSLLKPGGY 141
           +  +        +     +  D V C    F HL      +   R  L+N++S+++PGG 
Sbjct: 111 WVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL 170

Query: 142 FL--GITPDS--STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPL 197
            +      D   ST  A   KN+    + +  +  +++    ++    + + V+      
Sbjct: 171 LVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGR 230

Query: 198 FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
            G     KF       +       S   L +EA     +         D
Sbjct: 231 DGAPGFSKF-----RLSYYPHCLASFTELVQEAFGGRCQH----SVLGD 270

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 25/146 (17%)

Query: 4   LPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA------NY 57
               +        Y    +  I         + DL  G G       +A +        +
Sbjct: 19  EQRRKFIPCFDDFYG--VSVSIASVDTENPDILDLGAGTG-----LLSAFLMEKYPEATF 71

Query: 58  IGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQM 117
             +D++   +  A++ +    K    ++ EAD    +FE        + D+V     +  
Sbjct: 72  TLVDMSEKMLEIAKNRFRGNLK---VKYIEADYSKYDFE-------EKYDMVVSALSIH- 120

Query: 118 CFETEERARRLLQNVSSLLKPGGYFL 143
               +E  + L +   S+LK  G F+
Sbjct: 121 -HLEDEDKKELYKRSYSILKESGIFI 145

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 29/246 (11%), Positives = 57/246 (23%), Gaps = 53/246 (21%)

Query: 10  ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCG----------AGVDVDKWETALIANYIG 59
           +L                       V +L  G           G +V             
Sbjct: 61  DLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEV-----------TA 109

Query: 60  IDVATSGIGEARD--TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC----FQ 113
           ++++TS +   R                 + D     F         +   V        
Sbjct: 110 LELSTSVLAAFRKRLAEAPADVRDRCTLVQGD--MSAFALD-----KRFGTVVISSGSIN 162

Query: 114 HLQMCFETEERARRLLQNVSSLLKPGGYFL--GITPDSSTIWAKYQKNVEAYHNRSSSMK 171
            L      E   R L  +V   L+PGG FL      +++      +K      +    + 
Sbjct: 163 EL-----DEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVL 217

Query: 172 PNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAG 231
                     +   I    E     +            +    + L+    ++R    +G
Sbjct: 218 HVRHLPAEEIQEITIHPADETTDPFV------------VCTHRRRLLAPDQVVRELVRSG 265

Query: 232 LEYVEI 237
            + +  
Sbjct: 266 FDVIAQ 271

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 46.2 bits (109), Expect = 6e-06
 Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 18/166 (10%)

Query: 13  HHRLYEFAKTALIKI-----YSHPYVTVCDLYCGAGVDVDKWETALIA-------NYIGI 60
           H  + EF    L  I      +   + +  +  GAG    +  + + A       N   +
Sbjct: 29  HQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVV 88

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQADLVCCFQHLQMC 118
           + +   I + ++           +F      +  ++++M E  +  + D +   Q     
Sbjct: 89  EPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQ----M 144

Query: 119 FETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYH 164
               +     L+   SLL      L I    S+ W K  K   +  
Sbjct: 145 LYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRF 190

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 46.2 bits (109), Expect = 8e-06
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 12/141 (8%)

Query: 5   PIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY--IGIDV 62
            +P    T  R   F +     +   P   V  + CG   ++   + +       +GID 
Sbjct: 94  RLPAVLATRERHGHFRRALQRHL--RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDY 151

Query: 63  ATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETE 122
               +  A                  D  A   +T         DL+          + +
Sbjct: 152 DPEALDGATRLAAGHALAGQITLHRQD--AWKLDT-----REGYDLLTSNGLNIYEPD-D 203

Query: 123 ERARRLLQNVSSLLKPGGYFL 143
            R   L +     LKPGG  +
Sbjct: 204 ARVTELYRRFWQALKPGGALV 224

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 20/149 (13%)

Query: 7   PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDK-WETALIANYIGIDVATS 65
            +  L   R        L          V DL CG G  +    +        G+DV+ S
Sbjct: 9   KKLNLNQQR-LGTVVAVLKS---VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYS 64

Query: 66  GIGEAR-----DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
            +  A+     D     ++  I   F++            ++ +  D     + ++    
Sbjct: 65  VLERAKDRLKIDRLPEMQRKRI-SLFQSS------LVYRDKRFSGYDAATVIEVIEHL-- 115

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDS 149
            E R +   + +    +P    +  TP+ 
Sbjct: 116 DENRLQAFEKVLFEFTRPQTVIV-STPNK 143

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 22/114 (19%)

Query: 34  TVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEFFEAD 89
            + D  CG G          ++      +G D+    I  A+  +        A +   D
Sbjct: 49  KILDAGCGQGRI-----GGYLSKQGHDVLGTDLDPILIDYAKQDFPE------ARWVVGD 97

Query: 90  PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
              +             DL+    ++      + R    L N+   L   G  +
Sbjct: 98  LSVDQIS------ETDFDLIVSAGNVMGFLAEDGR-EPALANIHRALGADGRAV 144

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 23/184 (12%)

Query: 24  LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRK 79
           L+  Y      V DL CG G       + L+ +Y    +G+D++   I +AR+  +++  
Sbjct: 31  LLMKYMKKRGKVLDLACGVGGF-----SFLLEDYGFEVVGVDISEDMIRKAREYAKSRES 85

Query: 80  NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG 139
           N   EF   D  A         +    D V     + + FE  E   ++ + V  +LKP 
Sbjct: 86  N--VEFIVGD--ARKLS----FEDKTFDYVIFIDSI-VHFEPLEL-NQVFKEVRRVLKPS 135

Query: 140 GYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFG 199
           G F+    D   +  + ++++        S     V       + VI F+ E++ F +  
Sbjct: 136 GKFIMYFTDLRELLPRLKESLVVGQKYWIS----KVIPDQEERTVVIEFKSEQDSFRVRF 191

Query: 200 KKYQ 203
             + 
Sbjct: 192 NVWG 195

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Length = 289

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 14/69 (20%), Positives = 25/69 (36%)

Query: 75  ENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS 134
           E Q +  +      D                AD +     L+         +R L ++++
Sbjct: 144 ERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITT 203

Query: 135 LLKPGGYFL 143
           LL+PGG+ L
Sbjct: 204 LLRPGGHLL 212

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 42.7 bits (100), Expect = 8e-05
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQR 78
              ++  +P + + D  CG G       T  ++ +    IG+DV+ S +  A        
Sbjct: 48  PRFELLFNPELPLIDFACGNGTQ-----TKFLSQFFPRVIGLDVSKSALEIAAKENTAAN 102

Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCC--FQHLQMCFETEERARRLLQNVSSLL 136
                 +   D        Q+  +   A++     F H+       E+   L Q++  LL
Sbjct: 103 ----ISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHI-----PVEKRELLGQSLRILL 153

Query: 137 KPGGYFL 143
              G   
Sbjct: 154 GKQGAMY 160

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 9/134 (6%)

Query: 17  YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKW-ETALIANYIGIDVATSGIGEARDTWE 75
                 AL +        V DL CG G  +    + +      G+DV+   +  A++  +
Sbjct: 18  MNGVVAALKQ---SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLD 74

Query: 76  NQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL 135
             R       +E     +   T   ++ +  D     + ++       R     + +   
Sbjct: 75  --RLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHL--DLSRLGAFERVLFEF 130

Query: 136 LKPGGYFLGITPDS 149
            +P    +  TP+ 
Sbjct: 131 AQPKIVIVT-TPNI 143

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 22/118 (18%)

Query: 31  PYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDTWENQRK-NFIAEF 85
                 ++ C AG       T  +A        IDV    IG A    +     ++ A  
Sbjct: 51  AVSNGLEIGCAAGAF-----TEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATD 105

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
                 AE F           DL+   + L    E   + R  + N+  +L PGG+ +
Sbjct: 106 ILQFSTAELF-----------DLIVVAEVLY-YLEDMTQMRTAIDNMVKMLAPGGHLV 151

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 17  YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKW--ETALIANYIGIDVATSGIGEARDTW 74
            E+A   + +       T+ D  CG+G  +D        +   IG+D++  G+  A    
Sbjct: 710 VEYALKHIRE---SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKML 766

Query: 75  ENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS 134
             +          A     +   +   + +  D+  C + ++     E++A    + V S
Sbjct: 767 HVKLNKEACNVKSATLYDGSIL-EFDSRLHDVDIGTCLEVIEHM--EEDQACEFGEKVLS 823

Query: 135 LLKPGGYFLGITP 147
           L  P    +  TP
Sbjct: 824 LFHPKLLIVS-TP 835

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 25/157 (15%), Positives = 41/157 (26%), Gaps = 13/157 (8%)

Query: 14  HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY-------IGIDVATSG 66
                 +    IK++     TV D  CG G D     TA +A+         G D+    
Sbjct: 6   KNSLGQSHD-YIKMFVKEGDTVVDATCGNGND-----TAFLASLVGENGRVFGFDIQDKA 59

Query: 67  IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERAR 126
           I        +          +      +       KA   +L              E   
Sbjct: 60  IANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTI 119

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAY 163
           + L     LL  GG    +         + ++ V  +
Sbjct: 120 QALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEF 156

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 17/134 (12%)

Query: 14  HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGE 69
            R    +    +         V D   G G D     TA +A         DV    +G+
Sbjct: 6   KRPIHMSHD-FLAEVLDDESIVVDATMGNGND-----TAFLAGLSKKVYAFDVQEQALGK 59

Query: 70  ARD-TWENQRKNFIAEFFEADPCAENFETQMQEKANQA--DLVCCFQHLQMCFETEERAR 126
                 +   +N   E        EN +  ++E    A  +L       +          
Sbjct: 60  TSQRLSDLGIENT--ELILD--GHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTL 115

Query: 127 RLLQNVSSLLKPGG 140
             ++ +   L+ GG
Sbjct: 116 EAIEKILDRLEVGG 129

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 30/166 (18%)

Query: 8   RSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVA 63
             ++ +  ++   +  L  + +  +  V +   G G       T  +        GI+ +
Sbjct: 22  GEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGN-----LTNKLLLAGRTVYGIEPS 76

Query: 64  TSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC---FQHLQMCFE 120
                 A+   E   K F     E D    +FE          D +     F HL     
Sbjct: 77  REMRMIAK---EKLPKEF--SITEGD--FLSFEV-----PTSIDTIVSTYAFHHL----- 119

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNR 166
           T++     +   S LL  GG  +      +     Y K VEA   R
Sbjct: 120 TDDEKNVAIAKYSQLLNKGGKIVFADTIFAD-QDAYDKTVEAAKQR 164

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI 82
            L+   S P        CG G DV     +     +G+D++ S + +A +T+ +  K   
Sbjct: 58  HLVDTSSLPLGRALVPGCGGGHDVV-AMASPERFVVGLDISESALAKANETYGSSPKAEY 116

Query: 83  AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142
             F + D                 DL+    ++  C    E      +++  LLKP G  
Sbjct: 117 FSFVKEDVFTW-------RPTELFDLIFD--YVFFCAIEPEMRPAWAKSMYELLKPDGEL 167

Query: 143 LGIT 146
           + + 
Sbjct: 168 ITLM 171

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 14/149 (9%), Positives = 45/149 (30%), Gaps = 24/149 (16%)

Query: 13  HHRLYEFAKTALIKIYSHPYV--TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEA 70
           ++  ++     +++ ++  +    + +L    G    +       +   ++ +   I  A
Sbjct: 22  YNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRL-QEHFNDITCVEASEEAISHA 80

Query: 71  RDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ---HLQMCFETEERARR 127
           +   ++    +I   FE       +           D +       H+            
Sbjct: 81  QGRLKD-GITYIHSRFEDAQLPRRY-----------DNIVLTHVLEHIDDPVAL------ 122

Query: 128 LLQNVSSLLKPGGYFLGITPDSSTIWAKY 156
           L +     L  GG    + P+++ +  + 
Sbjct: 123 LKRINDDWLAEGGRLFLVCPNANAVSRQI 151

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 29/154 (18%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
            HR    ++   +K    P     ++  G G          +   IG++ +      AR 
Sbjct: 30  VHRFAYLSELQAVKCLL-PEGRGVEIGVGTGRF-----AVPLKIKIGVEPSERMAEIAR- 82

Query: 73  TWENQRKNFIAEFFEADPCAEN--FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQ 130
                ++       +    AEN   +          D               +   R L+
Sbjct: 83  -----KRG--VFVLKGT--AENLPLK------DESFDFALMV----TTICFVDDPERALK 123

Query: 131 NVSSLLKPGGYFLGITPDSSTIWAK-YQKNVEAY 163
               +LK GGY +    D  +   + Y+KN E  
Sbjct: 124 EAYRILKKGGYLIVGIVDRESFLGREYEKNKEKS 157

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 30/129 (23%), Positives = 41/129 (31%), Gaps = 26/129 (20%)

Query: 30  HPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEF 85
            P   + DL CG G       T  IA      +G D A + I +AR  + +        F
Sbjct: 56  QPGEFILDLGCGTG-----QLTEKIAQSGAEVLGTDNAATMIEKARQNYPH------LHF 104

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
             AD  A NF           D V     L       +     + ++   LK GG F+  
Sbjct: 105 DVAD--ARNFRV-----DKPLDAVFSNAMLHWV----KEPEAAIASIHQALKSGGRFVAE 153

Query: 146 TPDSSTIWA 154
                 I  
Sbjct: 154 FGGKGNIKY 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	357
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	100.0
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	100.0
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.8
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.75
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.74
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.74
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.74
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.74
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.73
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.73
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.72
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.72
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.72
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.71
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.71
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.7
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.7
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.7
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.7
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.69
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.69
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.69
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.68
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.68
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.68
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.68
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.68
3ocj_A	305	Putative exported protein; structural genomics, PS	99.67
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.67
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.67
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.67
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.67
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.67
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.66
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.66
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.66
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.66
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.65
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.65
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.65
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.64
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.64
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.64
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.64
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.64
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.64
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.64
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.63
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.63
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.62
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.62
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.62
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.62
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.62
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.62
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.61
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.61
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.61
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.61
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.61
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.6
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.59
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.59
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.59
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.59
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.58
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.58
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.58
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.58
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.57
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.57
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.57
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.57
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.57
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.57
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.56
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.56
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.55
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.55
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.55
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.55
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.54
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.54
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.54
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.53
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.53
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.53
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.53
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.53
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.53
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.53
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.53
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.52
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.51
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.51
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.51
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.51
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.5
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.5
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.5
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.5
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.5
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.5
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.49
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.49
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.49
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.48
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.48
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.48
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.47
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.47
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.47
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.47
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.46
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.46
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.46
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.45
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.45
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.45
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.45
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.44
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.44
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.44
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.44
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.44
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.44
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.43
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.42
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.42
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.42
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.42
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.41
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.41
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.41
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.41
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.41
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.4
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.4
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.39
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.39
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.39
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.39
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.39
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.39
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.39
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.38
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.38
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.38
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.37
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.37
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.37
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.37
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.36
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.36
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.36
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.36
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.36
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.35
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.35
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.35
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.35
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.35
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.35
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.35
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.35
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.35
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.34
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.34
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.33
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.33
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.33
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.33
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.32
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.32
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.31
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.31
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.31
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.3
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.3
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.3
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.3
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.3
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.3
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.29
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.29
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.28
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.28
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.28
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.28
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.28
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.27
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.27
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.27
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.27
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.26
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.26
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.26
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.26
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.26
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.26
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.25
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.24
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.24
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.24
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.24
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.24
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.23
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.23
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.23
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.22
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.22
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.21
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.21
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.2
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.2
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.2
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.2
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.2
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.19
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.19
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.19
2o07_A	304	Spermidine synthase; structural genomics, structur	99.18
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.18
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.18
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.17
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.17
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.17
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.16
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.15
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.15
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.15
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.14
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.13
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.13
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.13
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.12
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.12
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.11
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.11
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.08
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.08
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.07
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.07
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.02
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.02
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.0
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.98
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.96
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.96
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.95
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.93
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.92
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.89
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.89
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.87
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.86
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.86
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.85
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.81
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.81
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.77
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.73
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.69
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.65
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.61
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.59
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.58
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.58
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.57
3khk_A	544	Type I restriction-modification system methylation	98.55
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.53
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.49
3lkd_A	542	Type I restriction-modification system methyltrans	98.48
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.48
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.42
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.39
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.34
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.32
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.31
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.31
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.24
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.22
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.2
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.15
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.11
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.99
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.96
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.9
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.89
3ufb_A	530	Type I restriction-modification system methyltran	97.78
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.74
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.71
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.67
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.67
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.49
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.45
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.38
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.16
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.13
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.03
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.01
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.58
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.43
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.03
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.63
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	95.43
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.42
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.18
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.15
2oo3_A	283	Protein involved in catabolism of external DNA; st	95.01
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	94.81
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	94.61
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	94.36
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.34
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.22
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	94.06
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	93.91
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	93.74
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.64
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	92.73
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	92.58
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	92.55
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	92.37
3gms_A	340	Putative NADPH:quinone reductase; structural genom	92.14
3me5_A	482	Cytosine-specific methyltransferase; structural ge	91.97
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	91.93
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	91.78
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	91.75
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	91.74
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	91.69
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	91.39
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	91.32
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.32
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	91.31
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	91.2
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	90.98
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	90.75
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	90.74
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	90.48
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	90.45
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.34
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	90.31
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	90.27
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.16
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	90.11
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	90.06
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	89.84
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	89.72
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	89.4
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	89.37
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	89.25
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	89.2
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	88.96
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	88.1
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	88.1
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	88.07
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	88.05
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	87.88
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	87.82
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	87.68
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	87.45
4eye_A	342	Probable oxidoreductase; structural genomics, niai	87.26
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	87.24
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	87.02
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	86.96
2zig_A	297	TTHA0409, putative modification methylase; methylt	86.82
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	86.64
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	86.32
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	86.17
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	85.93
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	85.73
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	85.55
1id1_A	153	Putative potassium channel protein; RCK domain, E.	85.47
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	85.36
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	85.21
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	85.03
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	85.02
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	85.01
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	84.29
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	83.88
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	82.89
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	82.87
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	82.65
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	82.42
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	81.48
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	81.29
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	81.21
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	81.0
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	80.85
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	80.83
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	80.12

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=100.00  E-value=5.2e-40  Score=314.03  Aligned_cols=260  Identities=17%  Similarity=0.245  Sum_probs=193.3

Q ss_pred             CCCCCCCCcchHHHHHHHHHHHHHHHcCCC-------CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHh
Q 018352            2 SVLPIPRSELTHHRLYEFAKTALIKIYSHP-------YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW   74 (357)
Q Consensus         2 ~~~~~~r~~~p~~~~~nwvks~Li~~~~~~-------~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~   74 (357)
                      ++|...|+++|+++++||+|+.+|+++++.       +.+|||||||+|+++.+|+..+..+|+|+|+|+.||+.|++++
T Consensus        12 ~~f~~~r~~~~~~~~nn~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~   91 (302)
T 2vdw_A           12 SYFTNKRTRGPLGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERY   91 (302)
T ss_dssp             CCBCSSCCCHHHHHHHHHHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHH
T ss_pred             chhccccccchHHHHHHHHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHH
Confidence            688999999999999999999999998763       6899999999999999998877779999999999999999998


Q ss_pred             HhcCCC-----ceeEEEEcCCCCCchhhhhh--hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352           75 ENQRKN-----FIAEFFEADPCAENFETQMQ--EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus        75 ~~~~~~-----~~v~f~~~D~~~~~~~~~l~--~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      ......     ++++|.+.|+....+...+.  .++++||+|+|++++||+|+++ +..+++++++++|||||+|++++|
T Consensus        92 ~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~-~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A           92 NKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPR-HYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             HHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTT-THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HhccccccccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHH-HHHHHHHHHHHHcCCCCEEEEEeC
Confidence            765321     24678899986654432222  1357999999999999987655 357999999999999999999999


Q ss_pred             CchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEE-EEeecccCCCCccceee--EeEEcCCcccCcccccchHHHH
Q 018352          148 DSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV-ITFEVEEEKFPLFGKKY--QLKFANDISAETQCLVHFPSLI  224 (357)
Q Consensus       148 d~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~-i~f~~~~~~~p~fG~~Y--~f~L~~~~~~~~eylv~~~~l~  224 (357)
                      +.+.+...+.+       .+.    ..+++.+..+.|. +..         ++.+|  .|...+...+++||+|+++.|+
T Consensus       171 ~~~~~~~~~~~-------~~~----~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~e~~v~~~el~  230 (302)
T 2vdw_A          171 DGDKLSKLTDK-------KTF----IIHKNLPSSENYMSVEK---------IADDRIVVYNPSTMSTPMTEYIIKKNDIV  230 (302)
T ss_dssp             CHHHHTTCCSC-------EEE----ECCSSSCTTTSEEEECE---------EETTEEEEBCTTTBSSCEEEECCCHHHHH
T ss_pred             CHHHHHHHHhc-------CCc----ccccccccccceeeecc---------ccccccceeeccccCCCceeeeeEHHHHH
Confidence            98776532211       000    0122221111121 110         00111  1111222456789999999999


Q ss_pred             HHHHHcCCEEEEecCchHHHHhhHHHHHHH--------------HHhcCCCCCCCCCCCChhHHHHHhhheeEEEEec
Q 018352          225 RLAREAGLEYVEIQNLNEFYDDNRALFAGM--------------LMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKP  288 (357)
Q Consensus       225 ~la~e~Glelv~~~~f~~f~~~~~~~~~~~--------------~~~~~~~~~~~~g~l~~~e~e~~~lY~~f~F~K~  288 (357)
                      ++++++||++++..+|++||++++..+..|              +.+++      .+.++++||||++||++|||+|.
T Consensus       231 ~l~~~~Gl~lv~~~~f~~~~~~~~~~~~~~~~le~~~~~~~~~~l~~~~------~~~~~~~~~e~~~lY~~f~F~K~  302 (302)
T 2vdw_A          231 RVFNEYGFVLVDNVDFATIIERSKKFINGASTMEDRPSTRNFFELNRGA------IKCEGLDVEDLLSYYVVYVFSKR  302 (302)
T ss_dssp             HHHHHTTEEEEEEEEHHHHHHHHHHHHHTGGGGCCCHHHHHHHHHHHHH------HHCCSCSHHHHHTTEEEEEEEEC
T ss_pred             HHHHHCCCEEEEecChHHHHHHHHHHHHHhhhhhccCcccccccccccc------cccCCHhHHHHHhheEEEEEEEC
Confidence            999999999999999999999987644332              12221      13689999999999999999995

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=100.00  E-value=7.7e-37  Score=291.74  Aligned_cols=259  Identities=27%  Similarity=0.484  Sum_probs=201.0

Q ss_pred             HHHHHHHHHHHHHHHcCC-------CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcC------C
Q 018352           13 HHRLYEFAKTALIKIYSH-------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR------K   79 (357)
Q Consensus        13 ~~~~~nwvks~Li~~~~~-------~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~------~   79 (357)
                      .+.++||+|+.++..++.       ++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++....      .
T Consensus         9 lr~~~~~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~   88 (313)
T 3bgv_A            9 LRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEY   88 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-C
T ss_pred             hhhccHHHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccc
Confidence            456889999999887654       678999999999999999988777799999999999999999886531      2


Q ss_pred             CceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHh
Q 018352           80 NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN  159 (357)
Q Consensus        80 ~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~  159 (357)
                      ..++.|+++|+...++...+....++||+|+|.+++||+|++.++...++++++++|||||+|++++++.+.+.+.+.+.
T Consensus        89 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~  168 (313)
T 3bgv_A           89 IFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEAS  168 (313)
T ss_dssp             CCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTS
T ss_pred             cceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhh
Confidence            34789999999876532222212458999999999999778888999999999999999999999999998887765421


Q ss_pred             HHhhhcCCCCCCCCCCCCccCCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecC
Q 018352          160 VEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN  239 (357)
Q Consensus       160 ~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~  239 (357)
                            .     ...+||    .+|.+.|... ..++.+|.+|.|.+.. +.++++|+++++.+.++++++||++++..+
T Consensus       169 ------~-----~~~~~~----~~~~~~f~~~-~~~~~~~~~~~f~l~~-~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~  231 (313)
T 3bgv_A          169 ------E-----TESFGN----EIYTVKFQKK-GDYPLFGCKYDFNLEG-VVDVPEFLVYFPLLNEMAKKYNMKLVYKKT  231 (313)
T ss_dssp             ------S-----SSEEEC----SSEEEEESCS-SCCCSSCCEEEEEEC----CCEEECCCHHHHHHHGGGGTEEEEEEEE
T ss_pred             ------c-----cCccCC----eeEEEEeCCC-CCCCCccceEEEEECC-cccCcceEEcHHHHHHHHHHcCcEEEEecC
Confidence                  0     013444    4688888643 3468899999999855 357889999999999999999999999999


Q ss_pred             chHHHHhhHHHH--HHHHHhcCC------------------------------CCCCCCCCCChhHHHHHhhheeEEEEe
Q 018352          240 LNEFYDDNRALF--AGMLMSAGP------------------------------NLIDPRGRLLPRSYDVLGLYSTFIFQK  287 (357)
Q Consensus       240 f~~f~~~~~~~~--~~~~~~~~~------------------------------~~~~~~g~l~~~e~e~~~lY~~f~F~K  287 (357)
                      |.++++.+....  ..++.++..                              ...+..|+||++||||++||++|||+|
T Consensus       232 f~~~g~~~~~~~r~~~l~~~~~~~~~y~~~~~~~~~~~~~~ty~~~~~~~~~~~~~~~~~~~~~~e~e~~~~y~~~~f~k  311 (313)
T 3bgv_A          232 FLEFYEEKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEK  311 (313)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHHC----------------------------------CCSSSSCHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHhccchhhhHHHHhhhcccccCccccccccccchhhhHHHHHHHhhccccCcCCCCCHHHHHHHHhheEEEEEe
Confidence            999998864211  111111100                              001135799999999999999999999


Q ss_pred             c
Q 018352          288 P  288 (357)
Q Consensus       288 ~  288 (357)
                      .
T Consensus       312 ~  312 (313)
T 3bgv_A          312 Q  312 (313)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=100.00  E-value=5.5e-34  Score=267.85  Aligned_cols=250  Identities=26%  Similarity=0.480  Sum_probs=211.1

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC
Q 018352           13 HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA   92 (357)
Q Consensus        13 ~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~   92 (357)
                      ...+++|++..++..++.++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|++++...+...++.|+++|+..
T Consensus        46 ~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  125 (298)
T 1ri5_A           46 IRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG  125 (298)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT
T ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccc
Confidence            34578999999999999999999999999999988887777679999999999999999998876544578999999987


Q ss_pred             CchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCC
Q 018352           93 ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKP  172 (357)
Q Consensus        93 ~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~  172 (357)
                      .++.     .+++||+|+|.+++||.+++.++...++++++++|||||++++++|+...+..++..              
T Consensus       126 ~~~~-----~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~--------------  186 (298)
T 1ri5_A          126 RHMD-----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQ--------------  186 (298)
T ss_dssp             SCCC-----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHH--------------
T ss_pred             cccC-----CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHcc--------------
Confidence            6541     257899999999999977889999999999999999999999999999888776652              


Q ss_pred             CCCCCccCCccEEEEeecccCCCCc-cceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHH
Q 018352          173 NLVPNCIRSESYVITFEVEEEKFPL-FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALF  251 (357)
Q Consensus       173 ~~fgn~i~~~~y~i~f~~~~~~~p~-fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~  251 (357)
                      ..+++    ..|.+.++.. ..+|. +|..|.|++.+.+..+++++++++.+.++++++||+++....|.+||..+...+
T Consensus       187 ~~~~~----~~~~~~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~~~~~~~~~~~  261 (298)
T 1ri5_A          187 GRMSN----DFYKIELEKM-EDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGRRN  261 (298)
T ss_dssp             TCCBC----SSEEEECCCC-SSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHHHHHHHHHHTC
T ss_pred             CccCC----eeEEEEeCcc-ccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCHHHHHHHHHHHh
Confidence            12343    3688887643 23454 899999999887767778999999999999999999999999999999988777


Q ss_pred             HHHHHhcCCCCCCCCCCCChhHHHHHhhheeEEEEecCCCC
Q 018352          252 AGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDV  292 (357)
Q Consensus       252 ~~~~~~~~~~~~~~~g~l~~~e~e~~~lY~~f~F~K~~~~~  292 (357)
                      .+++++++      .|.++.++|+++++|++|+|+|.+++.
T Consensus       262 ~~~~~~~~------~~~~s~~~~~~~~~y~~~~~~k~~~~~  296 (298)
T 1ri5_A          262 PELSKKMG------LGCLTREESEVVGIYEVVVFRKLVPES  296 (298)
T ss_dssp             HHHHHSSS------CCCCCHHHHHHHTTEEEEEEEEC----
T ss_pred             hhHHHhcC------cCccCHHHHHHHhceEEEEEEEcCCcc
Confidence            77777776      388999999999999999999997643

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.80  E-value=5.3e-19  Score=165.12  Aligned_cols=114  Identities=21%  Similarity=0.240  Sum_probs=98.4

Q ss_pred             HHHHHHcCCCCCEEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh
Q 018352           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (357)
Q Consensus        22 s~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~   98 (357)
                      ..++.++++++.+|||||||+|..+..+++.   +..+|+|+|+|+.||+.|+++.+..+...+++|+++|+...++   
T Consensus        61 ~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~---  137 (261)
T 4gek_A           61 GMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---  137 (261)
T ss_dssp             HHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC---
T ss_pred             HHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc---
Confidence            3566778899999999999999888888765   3458999999999999999998876666689999999987554   


Q ss_pred             hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        99 l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                           +.||+|+|.+++|+ + +.++...+|++++++|||||+|+++
T Consensus       138 -----~~~d~v~~~~~l~~-~-~~~~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          138 -----ENASMVVLNFTLQF-L-EPSERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             -----CSEEEEEEESCGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----cccccceeeeeeee-c-CchhHhHHHHHHHHHcCCCcEEEEE
Confidence                 56999999999998 4 5666788999999999999999987

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.75  E-value=1.7e-17  Score=149.56  Aligned_cols=117  Identities=21%  Similarity=0.262  Sum_probs=98.5

Q ss_pred             HHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCC----CceeEEEEcCCCCCchhhhhh
Q 018352           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQMQ  100 (357)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~----~~~v~f~~~D~~~~~~~~~l~  100 (357)
                      +..+++++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++....+.    ..++.+.++|+...++     
T Consensus        24 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----   97 (235)
T 3sm3_A           24 IHNYLQEDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-----   97 (235)
T ss_dssp             HHHHCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS-----
T ss_pred             HHHhCCCCCeEEEECCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC-----
Confidence            44556788999999999998888887774 4999999999999999998876532    2368999999987665     


Q ss_pred             hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                       ..++||+|+|..++|+ +.+.+....+++++.++|||||+++++.++.
T Consensus        98 -~~~~~D~v~~~~~l~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (235)
T 3sm3_A           98 -HDSSFDFAVMQAFLTS-VPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ  144 (235)
T ss_dssp             -CTTCEEEEEEESCGGG-CCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             -CCCceeEEEEcchhhc-CCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence             4689999999999999 6677778899999999999999999986544

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.74  E-value=5.6e-16  Score=143.52  Aligned_cols=177  Identities=18%  Similarity=0.156  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHc-CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC
Q 018352           15 RLYEFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (357)
Q Consensus        15 ~~~nwvks~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~   93 (357)
                      .....+...++... ..++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....+...++.++.+|+...
T Consensus        44 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  123 (273)
T 3bus_A           44 DATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL  123 (273)
T ss_dssp             HHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC
Confidence            33333344455554 35788999999999998888877656799999999999999999987765545799999999876


Q ss_pred             chhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH-HHHHHHHhHHhhhcCCCCCCC
Q 018352           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST-IWAKYQKNVEAYHNRSSSMKP  172 (357)
Q Consensus        94 ~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~-i~~~~~~~~~~~~~~~~~~~~  172 (357)
                      ++      ++++||+|++..++|+ +.+   ...+++++.++|||||+++++.+.... ...........+         
T Consensus       124 ~~------~~~~fD~v~~~~~l~~-~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~---------  184 (273)
T 3bus_A          124 PF------EDASFDAVWALESLHH-MPD---RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAF---------  184 (273)
T ss_dssp             CS------CTTCEEEEEEESCTTT-SSC---HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHH---------
T ss_pred             CC------CCCCccEEEEechhhh-CCC---HHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHH---------
Confidence            65      4689999999999998 433   468899999999999999988654310 000000000000         


Q ss_pred             CCCCCccCCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHh
Q 018352          173 NLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD  246 (357)
Q Consensus       173 ~~fgn~i~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~  246 (357)
                                 +           ..++              ..++.+.+.+.++++++||+++....+...|..
T Consensus       185 -----------~-----------~~~~--------------~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~  222 (273)
T 3bus_A          185 -----------R-----------AGGG--------------VLSLGGIDEYESDVRQAELVVTSTVDISAQARP  222 (273)
T ss_dssp             -----------H-----------HHHT--------------CCCCCCHHHHHHHHHHTTCEEEEEEECHHHHTT
T ss_pred             -----------H-----------hhcC--------------ccCCCCHHHHHHHHHHcCCeEEEEEECcHhHHH
Confidence                       0           0000              013457788999999999999998888765544

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.74  E-value=1e-17  Score=152.20  Aligned_cols=187  Identities=20%  Similarity=0.272  Sum_probs=134.6

Q ss_pred             HHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      +..+++++.+|||||||+|..+..++..+ .+|+|+|+|+.+++.|+++...    .++.++++|+...++      .++
T Consensus        47 l~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~------~~~  115 (242)
T 3l8d_A           47 FEQYVKKEAEVLDVGCGDGYGTYKLSRTG-YKAVGVDISEVMIQKGKERGEG----PDLSFIKGDLSSLPF------ENE  115 (242)
T ss_dssp             HHHHSCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHTTTCB----TTEEEEECBTTBCSS------CTT
T ss_pred             HHHHcCCCCeEEEEcCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhccc----CCceEEEcchhcCCC------CCC
Confidence            34456788999999999998888887774 4999999999999999887533    378999999987665      468


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESY  184 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y  184 (357)
                      +||+|+|..++|+ +.   +...++++++++|+|||++++++++......                     ...     +
T Consensus       116 ~fD~v~~~~~l~~-~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~---------------------~~~-----~  165 (242)
T 3l8d_A          116 QFEAIMAINSLEW-TE---EPLRALNEIKRVLKSDGYACIAILGPTAKPR---------------------ENS-----Y  165 (242)
T ss_dssp             CEEEEEEESCTTS-SS---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGG---------------------GGG-----G
T ss_pred             CccEEEEcChHhh-cc---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhh---------------------hhh-----h
Confidence            9999999999998 43   4567899999999999999999765421100                     000     0


Q ss_pred             EEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHHHHHHHhcCCCCCC
Q 018352          185 VITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLID  264 (357)
Q Consensus       185 ~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~~~~~~~~~~~~~~  264 (357)
                      .          ..++..           ......+.+.+.++++++||+++....+   |......  .+          
T Consensus       166 ~----------~~~~~~-----------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~---~~~~~~~--~~----------  209 (242)
T 3l8d_A          166 P----------RLYGKD-----------VVCNTMMPWEFEQLVKEQGFKVVDGIGV---YKRGVNE--KM----------  209 (242)
T ss_dssp             G----------GGGTCC-----------CSSCCCCHHHHHHHHHHTTEEEEEEEEE---ECTTCCH--HH----------
T ss_pred             h----------hhcccc-----------ccccCCCHHHHHHHHHHcCCEEEEeecc---cccCccH--HH----------
Confidence            0          001110           0113456778999999999999988765   1111000  00          


Q ss_pred             CCCCCChhHHHHHhhheeEEEEecC
Q 018352          265 PRGRLLPRSYDVLGLYSTFIFQKPD  289 (357)
Q Consensus       265 ~~g~l~~~e~e~~~lY~~f~F~K~~  289 (357)
                       .+.+..+..++.+.+..|+++|..
T Consensus       210 -~~~~~~~l~~~~~~~~~~~~~~~~  233 (242)
T 3l8d_A          210 -LGQLSTDLQQSLTFLWVFMLKRHK  233 (242)
T ss_dssp             -HTTSCHHHHHHTEEEEEEEEEECC
T ss_pred             -HHHHHHhHHHHHhHhhhhhhHHHH
Confidence             135566778899999999999875

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.74  E-value=1.6e-17  Score=157.02  Aligned_cols=184  Identities=14%  Similarity=0.112  Sum_probs=127.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....+...+++++++|+...         +++||+
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~fD~  140 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---------DEPVDR  140 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---------CCCCSE
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---------CCCccE
Confidence            45788999999999999888887733799999999999999999998766555799999998542         478999


Q ss_pred             EEEccchhhccC-----CHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCcc
Q 018352          109 VCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES  183 (357)
Q Consensus       109 V~~~~~lh~~fe-----s~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~  183 (357)
                      |+|..++|++..     ..+....+++++.++|||||++++..+...........        +.     .+.       
T Consensus       141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--------~~-----~~~-------  200 (302)
T 3hem_A          141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQEL--------GL-----TSP-------  200 (302)
T ss_dssp             EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHH--------TC-----CCC-------
T ss_pred             EEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhc--------cc-----ccc-------
Confidence            999999998322     22567899999999999999999885543221110000        00     000       


Q ss_pred             EEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHHHHHH
Q 018352          184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGML  255 (357)
Q Consensus       184 y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~~~~~  255 (357)
                          +..  ..+..|-.+|.|        ...++.+.+.+.++++++||+++....+...|......|...+
T Consensus       201 ----~~~--~~~~~~~~~~~~--------p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~~tl~~w~~~~  258 (302)
T 3hem_A          201 ----MSL--LRFIKFILTEIF--------PGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWADAL  258 (302)
T ss_dssp             ----HHH--HHHHHHHHHHTC--------TTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHHHHHHHHH
T ss_pred             ----ccc--cchHHHHHHhcC--------CCCCCCCHHHHHHHHHhCCcEEEEEEeCchhHHHHHHHHHHHH
Confidence                000  000011112222        0114567888999999999999999999888876554444433

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.74  E-value=1.2e-16  Score=149.72  Aligned_cols=119  Identities=21%  Similarity=0.242  Sum_probs=95.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCC---CceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK---NFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~---~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ++.+|||||||+|..+..++..+. +|+|+|+|+.|++.|+++......   ..++.+..+|+...+  ..+ ..+++||
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~-~~~~~fD  132 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD--KDV-PAGDGFD  132 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH--HHS-CCTTCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc--ccc-ccCCCeE
Confidence            578999999999998888877765 999999999999999987643221   125778888876533  000 1458999


Q ss_pred             EEEEc-cchhhccCC----HHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352          108 LVCCF-QHLQMCFET----EERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (357)
Q Consensus       108 lV~~~-~~lh~~fes----~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~  154 (357)
                      +|+|. .++|+ +.+    .++..+++++++++|||||+|++++++.+.+..
T Consensus       133 ~V~~~g~~l~~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  183 (293)
T 3thr_A          133 AVICLGNSFAH-LPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILS  183 (293)
T ss_dssp             EEEECTTCGGG-SCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred             EEEEcChHHhh-cCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHHhh
Confidence            99998 89998 444    567889999999999999999999999877754

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.73  E-value=1e-15  Score=143.86  Aligned_cols=111  Identities=12%  Similarity=0.008  Sum_probs=94.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++.+..+...++.|+++|+...++      ++++||+
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~fD~  153 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC------EDNSYDF  153 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS------CTTCEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC------CCCCEeE
Confidence            3578899999999999888887763459999999999999999998766554579999999988766      5689999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |+|..++|+ +.+   ...+++++.++|||||+++++.+..
T Consensus       154 v~~~~~l~~-~~~---~~~~l~~~~~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          154 IWSQDAFLH-SPD---KLKVFQECARVLKPRGVMAITDPMK  190 (297)
T ss_dssp             EEEESCGGG-CSC---HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEecchhhh-cCC---HHHHHHHHHHHcCCCeEEEEEEecc
Confidence            999999998 443   6789999999999999999986653

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.73  E-value=1.7e-17  Score=148.61  Aligned_cols=109  Identities=15%  Similarity=0.103  Sum_probs=88.6

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcC-----------CCceeEEEEcCCCCCchhh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----------KNFIAEFFEADPCAENFET   97 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~-----------~~~~v~f~~~D~~~~~~~~   97 (357)
                      ++++.+|||+|||+|.++..+++.+. +|+|+|+|+.||+.|+++.....           ...+++|+++|+...++  
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~--   96 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA--   96 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH--
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCc--
Confidence            45788999999999999888877765 99999999999999998864210           02368999999988665  


Q ss_pred             hhhhcC-CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352           98 QMQEKA-NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus        98 ~l~~~~-~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                          .+ ++||+|++..++|+ + +.++..+++++++++|||||++++.+
T Consensus        97 ----~~~~~fD~v~~~~~l~~-l-~~~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A           97 ----RDIGHCAAFYDRAAMIA-L-PADMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             ----HHHHSEEEEEEESCGGG-S-CHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ----ccCCCEEEEEECcchhh-C-CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                22 68999999999988 4 46667889999999999999855554

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.72  E-value=1.8e-16  Score=148.25  Aligned_cols=215  Identities=17%  Similarity=0.188  Sum_probs=140.5

Q ss_pred             HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc-hhhhhhh
Q 018352           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQMQE  101 (357)
Q Consensus        23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~-~~~~l~~  101 (357)
                      .++..+..++.+|||||||+|..+..++.. ..+|+|+|+|+.+++.|+++....+...++.|+++|+...+ +      
T Consensus        60 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------  132 (285)
T 4htf_A           60 RVLAEMGPQKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH------  132 (285)
T ss_dssp             HHHHHTCSSCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG------
T ss_pred             HHHHhcCCCCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh------
Confidence            345555556789999999999888888777 45999999999999999999887655457999999987654 3      


Q ss_pred             cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCC
Q 018352          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRS  181 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~  181 (357)
                      .+++||+|+|..++|+ +.+   ...+++++.++|||||++++.+++.........-                .++.   
T Consensus       133 ~~~~fD~v~~~~~l~~-~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~----------------~~~~---  189 (285)
T 4htf_A          133 LETPVDLILFHAVLEW-VAD---PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMV----------------AGNF---  189 (285)
T ss_dssp             CSSCEEEEEEESCGGG-CSC---HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHH----------------TTCH---
T ss_pred             cCCCceEEEECchhhc-ccC---HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHH----------------hcCH---
Confidence            4689999999999998 433   4679999999999999999999887654322110                0000   


Q ss_pred             ccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCc---hHHHHhh---HHHHHHHH
Q 018352          182 ESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL---NEFYDDN---RALFAGML  255 (357)
Q Consensus       182 ~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f---~~f~~~~---~~~~~~~~  255 (357)
                       -+   + .  ...+. +  ...    .  ....+..+.+.+.++++++||+++....+   .+|....   ...+..++
T Consensus       190 -~~---~-~--~~~~~-~--~~~----~--~~~~~~~~~~~l~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (285)
T 4htf_A          190 -DY---V-Q--AGMPK-K--KKR----T--LSPDYPRDPTQVYLWLEEAGWQIMGKTGVRVFHDYLREKHQQRDCYEALL  253 (285)
T ss_dssp             -HH---H-H--TTCCC-C------------CCCSCCBCHHHHHHHHHHTTCEEEEEEEESSSGGGCSSTTHHHHTHHHHH
T ss_pred             -HH---H-h--hhccc-c--ccc----c--CCCCCCCCHHHHHHHHHHCCCceeeeeeEEEeeecccccccCcccHHHHH
Confidence             00   0 0  00000 0  000    0  01124568899999999999999977654   4443321   11133333


Q ss_pred             HhcCCCCCCCCCCCChhHHHHHhhheeEEEEecCC
Q 018352          256 MSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDP  290 (357)
Q Consensus       256 ~~~~~~~~~~~g~l~~~e~e~~~lY~~f~F~K~~~  290 (357)
                      +-.-. +    +  ....+...+-|..++.+|.+.
T Consensus       254 ~~e~~-~----~--~~~~~~~~~~~~~~varK~~~  281 (285)
T 4htf_A          254 ELETR-Y----C--RQEPYITLGRYIHVTARKPQS  281 (285)
T ss_dssp             HHHHH-H----T--TSTTGGGGCSEEEEEEECCCC
T ss_pred             HHHHH-h----c--CCChHHHHHhheEEEEEcCCc
Confidence            21100 0    0  012345566788889999765

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.72  E-value=5.3e-16  Score=145.03  Aligned_cols=180  Identities=18%  Similarity=0.219  Sum_probs=124.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....+...++.+..+|+..  +      + ++||+
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~------~-~~fD~  132 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ--F------D-EPVDR  132 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG--C------C-CCCSE
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh--C------C-CCeeE
Confidence            3578899999999999888887553459999999999999999998866554578999999743  3      2 78999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF  188 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f  188 (357)
                      |+|..++|+ + ..++...+++++.++|||||++++..++.........        .+.       ...         +
T Consensus       133 v~~~~~l~~-~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~--------~~~-------~~~---------~  186 (287)
T 1kpg_A          133 IVSIGAFEH-F-GHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHE--------RGL-------PMS---------F  186 (287)
T ss_dssp             EEEESCGGG-T-CTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTT--------TTC-------SCH---------H
T ss_pred             EEEeCchhh-c-ChHHHHHHHHHHHHhcCCCCEEEEEEecCCCcccccc--------ccc-------ccc---------c
Confidence            999999998 4 2245778999999999999999998766533221000        000       000         0


Q ss_pred             ecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHHHH
Q 018352          189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAG  253 (357)
Q Consensus       189 ~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~~~  253 (357)
                      ..  .....|-.+|.|        ....+.+.+.+.++++++||+++....+...|......|..
T Consensus       187 ~~--~~~~~~~~~~~~--------~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~~~~~~w~~  241 (287)
T 1kpg_A          187 TF--ARFLKFIVTEIF--------PGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSA  241 (287)
T ss_dssp             HH--HHHHHHHHHHTS--------TTCCCCCHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHH
T ss_pred             cc--cchhhhHHheeC--------CCCCCCCHHHHHHHHHhCCcEEEEEEeCcHhHHHHHHHHHH
Confidence            00  000000011111        01134578899999999999999999987777665444433

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.72  E-value=2.7e-18  Score=160.04  Aligned_cols=102  Identities=16%  Similarity=0.193  Sum_probs=85.2

Q ss_pred             HHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      ..+.+.+.+|||||||+|..+..++.. ..+|+|+|+|+.||+.|+++       .++.|+++|+...++      ++++
T Consensus        34 ~~~~~~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~------~~~s   99 (257)
T 4hg2_A           34 GEVAPARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGL------PPAS   99 (257)
T ss_dssp             HHHSSCSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCC------CSSC
T ss_pred             HHhcCCCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcc------cCCc
Confidence            345566789999999999888777654 46999999999999887532       268999999988777      6789


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ||+|+|..++|| + +   ..+++++++|+|||||+|++..
T Consensus       100 fD~v~~~~~~h~-~-~---~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          100 VDVAIAAQAMHW-F-D---LDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             EEEEEECSCCTT-C-C---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccEEEEeeehhH-h-h---HHHHHHHHHHHcCCCCEEEEEE
Confidence            999999999999 5 2   4568999999999999998774

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.71  E-value=2.3e-16  Score=144.84  Aligned_cols=161  Identities=17%  Similarity=0.195  Sum_probs=121.4

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++....   .+++++++|+...++      ++++||+|
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~------~~~~fD~v  124 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEF------PENNFDLI  124 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCC------CTTCEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCC------CCCcEEEE
Confidence            367899999999999888887764569999999999999999887653   378999999988665      56899999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEee
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFE  189 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~  189 (357)
                      +|..++|+ + +..+...+++++.++|||||+++++.+......                    .+...     +    .
T Consensus       125 ~~~~~l~~-~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--------------------~~~~~-----~----~  173 (266)
T 3ujc_A          125 YSRDAILA-L-SLENKNKLFQKCYKWLKPTGTLLITDYCATEKE--------------------NWDDE-----F----K  173 (266)
T ss_dssp             EEESCGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG--------------------GCCHH-----H----H
T ss_pred             eHHHHHHh-c-ChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc--------------------cchHH-----H----H
Confidence            99999998 4 457889999999999999999999865432100                    00000     0    0


Q ss_pred             cccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhH
Q 018352          190 VEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR  248 (357)
Q Consensus       190 ~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~  248 (357)
                                 .|   +....    ..+.+.+.+.++++++||+.+....+...|....
T Consensus       174 -----------~~---~~~~~----~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~  214 (266)
T 3ujc_A          174 -----------EY---VKQRK----YTLITVEEYADILTACNFKNVVSKDLSDYWNQLL  214 (266)
T ss_dssp             -----------HH---HHHHT----CCCCCHHHHHHHHHHTTCEEEEEEECHHHHHHHH
T ss_pred             -----------HH---HhcCC----CCCCCHHHHHHHHHHcCCeEEEEEeCCHHHHHHH
Confidence                       00   00000    0244778899999999999999998887776543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.71  E-value=1.5e-16  Score=145.98  Aligned_cols=106  Identities=18%  Similarity=0.141  Sum_probs=91.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||||||+|..+..++..+..+|+|+|+|+.+++.|+++...    .++.|+++|+...++      .+++||+|+
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~------~~~~fD~v~  113 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS----PVVCYEQKAIEDIAI------EPDAYNVVL  113 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCC----TTEEEEECCGGGCCC------CTTCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhcc----CCeEEEEcchhhCCC------CCCCeEEEE
Confidence            6789999999999888888877766999999999999999998762    278999999876554      468999999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      |..++|+ +.   +...++++++++|||||++++++++..
T Consensus       114 ~~~~l~~-~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~  149 (253)
T 3g5l_A          114 SSLALHY-IA---SFDDICKKVYINLKSSGSFIFSVEHPV  149 (253)
T ss_dssp             EESCGGG-CS---CHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             Echhhhh-hh---hHHHHHHHHHHHcCCCcEEEEEeCCCc
Confidence            9999999 43   467899999999999999999988753

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.70  E-value=2e-16  Score=144.64  Aligned_cols=107  Identities=18%  Similarity=0.169  Sum_probs=92.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....   .++.|+++|+...++      .+++||+|
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~------~~~~fD~v  162 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATL------PPNTYDLI  162 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCC------CSSCEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCC------CCCCeEEE
Confidence            367899999999998888887776778999999999999999987653   378999999877555      45799999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +|..++|+ + +.++...+++++.++|||||+++++.+
T Consensus       163 ~~~~~l~~-~-~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          163 VIQWTAIY-L-TDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEESCGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEcchhhh-C-CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            99999998 4 446788999999999999999999865

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.70  E-value=3.7e-16  Score=144.31  Aligned_cols=108  Identities=14%  Similarity=0.223  Sum_probs=91.5

Q ss_pred             HHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      +....+++.+|||||||+|..+..++..+ .+|+|+|+|+.+++.|+++..      ++.|+++|+...++       ++
T Consensus        44 l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-------~~  109 (263)
T 3pfg_A           44 VRRHSPKAASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-------GR  109 (263)
T ss_dssp             HHHHCTTCCEEEEETCTTSHHHHHHTTTS-SEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-------SC
T ss_pred             HHhhCCCCCcEEEeCCcCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-------cC
Confidence            34455677899999999998888776664 489999999999999998864      57899999987554       47


Q ss_pred             cccEEEEcc-chhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          105 QADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       105 ~FDlV~~~~-~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +||+|+|.+ ++|| +.+.++...+++++.++|||||+|++...
T Consensus       110 ~fD~v~~~~~~l~~-~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A          110 RFSAVTCMFSSIGH-LAGQAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             CEEEEEECTTGGGG-SCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CcCEEEEcCchhhh-cCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            899999998 9999 65667889999999999999999998743

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.70  E-value=1.1e-16  Score=151.12  Aligned_cols=120  Identities=18%  Similarity=0.133  Sum_probs=96.5

Q ss_pred             HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC--ceeEEEEcCCCCCchhhhhh
Q 018352           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQ  100 (357)
Q Consensus        23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~--~~v~f~~~D~~~~~~~~~l~  100 (357)
                      .++..+..++.+|||||||+|..+..++..+ .+|+|+|+|+.|++.|+++....+..  .+++|+++|+...++     
T Consensus        74 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-----  147 (299)
T 3g2m_A           74 EFATRTGPVSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-----  147 (299)
T ss_dssp             HHHHHHCCCCSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-----
T ss_pred             HHHHhhCCCCCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-----
Confidence            3444444555699999999999888887765 58999999999999999998764211  368999999987554     


Q ss_pred             hcCCcccEEEEcc-chhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          101 EKANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       101 ~~~~~FDlV~~~~-~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                        +++||+|+|.+ .+|+ + +.++...+|+++.++|||||+|++.+++....
T Consensus       148 --~~~fD~v~~~~~~~~~-~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  196 (299)
T 3g2m_A          148 --DKRFGTVVISSGSINE-L-DEADRRGLYASVREHLEPGGKFLLSLAMSEAA  196 (299)
T ss_dssp             --SCCEEEEEECHHHHTT-S-CHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred             --CCCcCEEEECCccccc-C-CHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence              47899998765 4665 4 66778999999999999999999999998655

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.70  E-value=7.4e-17  Score=149.92  Aligned_cols=129  Identities=17%  Similarity=0.147  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHc---CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC-----------
Q 018352           15 RLYEFAKTALIKIY---SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-----------   80 (357)
Q Consensus        15 ~~~nwvks~Li~~~---~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-----------   80 (357)
                      .+.+|+...+-..+   ..++.+|||||||+|..+...+..+..+|+|+|+|+.||+.|+++.+.....           
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~  115 (263)
T 2a14_A           36 EMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFAC  115 (263)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHH
Confidence            36778766654443   2367899999999996655554556668999999999999999876543110           


Q ss_pred             -----------------ceeE-EEEcCCCCC-chhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcE
Q 018352           81 -----------------FIAE-FFEADPCAE-NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGY  141 (357)
Q Consensus        81 -----------------~~v~-f~~~D~~~~-~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~  141 (357)
                                       .++. ++++|+... ++.. .  ..++||+|+|.+++|++..+.++..+++++++++|||||+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~-~--~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~  192 (263)
T 2a14_A          116 ELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAP-A--VLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGH  192 (263)
T ss_dssp             HHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTT-C--CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred             hcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCc-c--ccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcE
Confidence                             1233 899999873 2210 0  2468999999999999666778888999999999999999


Q ss_pred             EEEEe
Q 018352          142 FLGIT  146 (357)
Q Consensus       142 fi~t~  146 (357)
                      |+++.
T Consensus       193 li~~~  197 (263)
T 2a14_A          193 LVTTV  197 (263)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99984

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.69  E-value=1.9e-16  Score=140.76  Aligned_cols=124  Identities=18%  Similarity=0.209  Sum_probs=102.6

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      ++..++.++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....   .++.++++|+...++      .+
T Consensus        35 ~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~~i~~~~~d~~~~~~------~~  105 (215)
T 2pxx_A           35 LLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV---PQLRWETMDVRKLDF------PS  105 (215)
T ss_dssp             HHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC---TTCEEEECCTTSCCS------CS
T ss_pred             HHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC---CCcEEEEcchhcCCC------CC
Confidence            344556788999999999998888888776669999999999999999987642   268999999987655      45


Q ss_pred             CcccEEEEccchhhcc-----------CCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352          104 NQADLVCCFQHLQMCF-----------ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~f-----------es~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                      ++||+|++..++|++.           ++..+...+++++.++|||||++++.+++.......+
T Consensus       106 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~  169 (215)
T 2pxx_A          106 ASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRH  169 (215)
T ss_dssp             SCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHHHHH
T ss_pred             CcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHHHHH
Confidence            7899999999888743           2356778999999999999999999999987665544

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.69  E-value=8e-17  Score=146.02  Aligned_cols=108  Identities=11%  Similarity=0.155  Sum_probs=90.3

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||||||+|..+..++..+. +|+|+|+|+.+++.|+++...     ++.|+++|+... .      .+++||+|+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~------~~~~fD~v~  108 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-Q------LPRRYDNIV  108 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-C------CSSCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-C------cCCcccEEE
Confidence            567999999999988877766544 899999999999999988753     689999998664 2      357899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHH-hcccCCcEEEEEeCCchHHHHH
Q 018352          111 CFQHLQMCFETEERARRLLQNVS-SLLKPGGYFLGITPDSSTIWAK  155 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~-~~LkpGG~fi~t~pd~~~i~~~  155 (357)
                      |..++|+ +.+   ...++++++ ++|||||++++++|+.......
T Consensus       109 ~~~~l~~-~~~---~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~  150 (250)
T 2p7i_A          109 LTHVLEH-IDD---PVALLKRINDDWLAEGGRLFLVCPNANAVSRQ  150 (250)
T ss_dssp             EESCGGG-CSS---HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHH
T ss_pred             EhhHHHh-hcC---HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHH
Confidence            9999998 433   468999999 9999999999999998665443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.69  E-value=1.9e-16  Score=140.41  Aligned_cols=142  Identities=14%  Similarity=0.062  Sum_probs=111.2

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      +.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++..      ++.|+++|+...++      .+++||+|+|
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~------~~~~fD~v~~  108 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHP------SVTFHHGTITDLSD------SPKRWAGLLA  108 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCT------TSEEECCCGGGGGG------SCCCEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCC------CCeEEeCccccccc------CCCCeEEEEe
Confidence            78999999999988888877754 99999999999999998843      57899999876554      5689999999


Q ss_pred             ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEeecc
Q 018352          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE  191 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~~  191 (357)
                      ..++|+ + +.++...+++++.++|||||++++++++....                               .  .+.. 
T Consensus       109 ~~~l~~-~-~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-------------------------------~--~~~~-  152 (203)
T 3h2b_A          109 WYSLIH-M-GPGELPDALVALRMAVEDGGGLLMSFFSGPSL-------------------------------E--PMYH-  152 (203)
T ss_dssp             ESSSTT-C-CTTTHHHHHHHHHHTEEEEEEEEEEEECCSSC-------------------------------E--EECC-
T ss_pred             hhhHhc-C-CHHHHHHHHHHHHHHcCCCcEEEEEEccCCch-------------------------------h--hhhc-
Confidence            999998 4 34567889999999999999999987664210                               0  0100 


Q ss_pred             cCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCch
Q 018352          192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (357)
Q Consensus       192 ~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~  241 (357)
                                       ..  ...+..+.+.+.++++++||+++....+.
T Consensus       153 -----------------~~--~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  183 (203)
T 3h2b_A          153 -----------------PV--ATAYRWPLPELAQALETAGFQVTSSHWDP  183 (203)
T ss_dssp             -----------------SS--SCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred             -----------------hh--hhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence                             00  01245578889999999999999987664

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.68  E-value=9.8e-16  Score=138.71  Aligned_cols=107  Identities=19%  Similarity=0.279  Sum_probs=91.4

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++.....   ++.++++|+...++      . ++||+
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~------~-~~fD~  112 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF------E-EKYDM  112 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC------C-SCEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC------C-CCceE
Confidence            367899999999998888887763 5699999999999999999986543   78999999987665      3 78999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|..++|+ + +......++++++++|||||+++++.+.
T Consensus       113 v~~~~~l~~-~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~  150 (234)
T 3dtn_A          113 VVSALSIHH-L-EDEDKKELYKRSYSILKESGIFINADLV  150 (234)
T ss_dssp             EEEESCGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEeCcccc-C-CHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            999999999 5 5556678999999999999999988543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.68  E-value=7.4e-16  Score=138.22  Aligned_cols=111  Identities=14%  Similarity=0.169  Sum_probs=90.4

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCc----eeEEEEcCCCCCchhhhhhhcCC
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNF----IAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~----~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      .++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++++..+...    ++.|+++|+...+.      ..+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~  101 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK------RFH  101 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG------GGC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc------cCC
Confidence            356899999999998888887753 4699999999999999999987554332    68999999866554      357


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +||+|+|..++|+ + +.++...+++++.++|||||+++ ++++.
T Consensus       102 ~fD~v~~~~~l~~-~-~~~~~~~~l~~~~~~LkpgG~li-~~~~~  143 (217)
T 3jwh_A          102 GYDAATVIEVIEH-L-DLSRLGAFERVLFEFAQPKIVIV-TTPNI  143 (217)
T ss_dssp             SCSEEEEESCGGG-C-CHHHHHHHHHHHHTTTCCSEEEE-EEEBH
T ss_pred             CcCEEeeHHHHHc-C-CHHHHHHHHHHHHHHcCCCEEEE-EccCc
Confidence            8999999999999 4 56667899999999999999555 45553

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.68  E-value=1.4e-15  Score=140.24  Aligned_cols=105  Identities=18%  Similarity=0.284  Sum_probs=88.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..++... .+|+|+|+|+.|++.|+++.+..+.. ++.|+++|+...++      ++++||+|
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~------~~~~fD~V  107 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPF------TDERFHIV  107 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCS------CTTCEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCC------CCCCEEEE
Confidence            477899999999998777766554 49999999999999999998765432 68999999988766      56899999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +|.+++|+ +.+   ...+++++.++|||||+|+++.
T Consensus       108 ~~~~~l~~-~~d---~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          108 TCRIAAHH-FPN---PASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             EEESCGGG-CSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEhhhhHh-cCC---HHHHHHHHHHHcCCCCEEEEEE
Confidence            99999999 543   5688999999999999999873

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.68  E-value=2.2e-15  Score=143.08  Aligned_cols=177  Identities=15%  Similarity=0.204  Sum_probs=122.9

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....+...++.++++|+..  +       +++||+|
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~-------~~~fD~v  159 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED--F-------AEPVDRI  159 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG--C-------CCCCSEE
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH--C-------CCCcCEE
Confidence            478899999999998888887763449999999999999999998876554568999999744  2       2689999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEee
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFE  189 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~  189 (357)
                      +|..++|+ + ..++...+++++.++|||||++++.+++...... ....                +       +.+.+.
T Consensus       160 ~~~~~l~~-~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~----------------~-------~~~~~~  213 (318)
T 2fk8_A          160 VSIEAFEH-F-GHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYE-MAAR----------------G-------KKLSFE  213 (318)
T ss_dssp             EEESCGGG-T-CGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHH-HHTT----------------C-------HHHHHH
T ss_pred             EEeChHHh-c-CHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchh-hhhc----------------c-------cccccc
Confidence            99999998 4 2356788999999999999999998766533211 0000                0       000000


Q ss_pred             cccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHH
Q 018352          190 VEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALF  251 (357)
Q Consensus       190 ~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~  251 (357)
                      .  .....|-.+|.|        ...++.+.+.+.++++++||+++....+...|......|
T Consensus       214 ~--~~~~~~~~~~~~--------~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~~~~~~w  265 (318)
T 2fk8_A          214 T--ARFIKFIVTEIF--------PGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIW  265 (318)
T ss_dssp             H--HHHHHHHHHHTS--------TTCCCCCHHHHHHHHHHTTCBCCCCEECHHHHHHHHHHH
T ss_pred             c--cchhhHHHHhcC--------CCCcCCCHHHHHHHHHhCCCEEEEEEecchhHHHHHHHH
Confidence            0  000000011111        011455888999999999999999988887776544333

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.68  E-value=4.2e-16  Score=139.57  Aligned_cols=109  Identities=17%  Similarity=0.171  Sum_probs=92.3

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..++.+|||+|||+|..+..++...  ..+|+|+|+|+.+++.|+++....+.. ++.++++|+...++      .+++|
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~------~~~~f  107 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPL------PDNTV  107 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSS------CSSCE
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCC------CCCCe
Confidence            4577899999999999888887764  469999999999999999998766443 68999999987665      46889


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|+|..++|+ +.   +...+++++.++|||||+++++.++
T Consensus       108 D~v~~~~~l~~-~~---~~~~~l~~~~~~LkpgG~l~i~~~~  145 (219)
T 3dh0_A          108 DFIFMAFTFHE-LS---EPLKFLEELKRVAKPFAYLAIIDWK  145 (219)
T ss_dssp             EEEEEESCGGG-CS---SHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEeehhhhh-cC---CHHHHHHHHHHHhCCCeEEEEEEec
Confidence            99999999998 43   4578999999999999999988544

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.67  E-value=3e-16  Score=148.70  Aligned_cols=115  Identities=16%  Similarity=0.136  Sum_probs=97.5

Q ss_pred             HHcCCCCCEEEEECCCCChhHHHHH--HhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 018352           26 KIYSHPYVTVCDLYCGAGVDVDKWE--TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~k~~--~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      ...+.++.+|||||||+|..+..++  ..+..+|+|+|+|+.+++.|+++....+...+++|+++|+...++      . 
T Consensus       113 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~-  185 (305)
T 3ocj_A          113 QRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT------R-  185 (305)
T ss_dssp             HHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC------C-
T ss_pred             HhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc------c-
Confidence            4556788999999999998887763  335669999999999999999998776555569999999987655      3 


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ++||+|+|..++|+ +.+.+....+++++.++|||||++++....
T Consensus       186 ~~fD~v~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          186 EGYDLLTSNGLNIY-EPDDARVTELYRRFWQALKPGGALVTSFLT  229 (305)
T ss_dssp             SCEEEEECCSSGGG-CCCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCeEEEEECChhhh-cCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            88999999999998 667787888999999999999999998644

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.67  E-value=4.3e-16  Score=138.59  Aligned_cols=119  Identities=15%  Similarity=0.077  Sum_probs=97.4

Q ss_pred             HHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh
Q 018352           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (357)
Q Consensus        21 ks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~  100 (357)
                      ...++..+..+..+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++.+..+...++.++++|+...++     
T Consensus        33 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----  107 (219)
T 3dlc_A           33 AENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI-----  107 (219)
T ss_dssp             HHHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS-----
T ss_pred             HHHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC-----
Confidence            344455544444499999999998888887775569999999999999999998876555579999999987665     


Q ss_pred             hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                       .+++||+|+|..++|+ +.   +...+++++.++|||||++++..+..
T Consensus       108 -~~~~~D~v~~~~~l~~-~~---~~~~~l~~~~~~L~pgG~l~~~~~~~  151 (219)
T 3dlc_A          108 -EDNYADLIVSRGSVFF-WE---DVATAFREIYRILKSGGKTYIGGGFG  151 (219)
T ss_dssp             -CTTCEEEEEEESCGGG-CS---CHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             -CcccccEEEECchHhh-cc---CHHHHHHHHHHhCCCCCEEEEEeccC
Confidence             5689999999999999 43   45679999999999999999886554

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.67  E-value=7.3e-16  Score=138.30  Aligned_cols=111  Identities=18%  Similarity=0.217  Sum_probs=89.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCc----eeEEEEcCCCCCchhhhhhhcCC
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNF----IAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~----~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      .++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|++++...+...    +++|+++|+...+.      ..+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~  101 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK------RFS  101 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG------GGT
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc------ccC
Confidence            357899999999998888776653 3699999999999999999986543322    68999999866554      457


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +||+|+|..++|+ + +.++...+++++.++|||||++ +++++.
T Consensus       102 ~fD~V~~~~~l~~-~-~~~~~~~~l~~~~~~LkpgG~~-i~~~~~  143 (219)
T 3jwg_A          102 GYDAATVIEVIEH-L-DENRLQAFEKVLFEFTRPQTVI-VSTPNK  143 (219)
T ss_dssp             TCSEEEEESCGGG-C-CHHHHHHHHHHHHTTTCCSEEE-EEEEBG
T ss_pred             CCCEEEEHHHHHh-C-CHHHHHHHHHHHHHhhCCCEEE-EEccch
Confidence            8999999999999 4 5566789999999999999954 455553

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.67  E-value=8.3e-16  Score=137.73  Aligned_cols=200  Identities=15%  Similarity=0.153  Sum_probs=129.6

Q ss_pred             HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC--Cchhhhhh
Q 018352           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQ  100 (357)
Q Consensus        23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~--~~~~~~l~  100 (357)
                      .++..+..++.+|||+|||+|..+..+...+ .+++|+|+|+.+++.|+++.        ..++++|+..  .++     
T Consensus        24 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~-----   89 (230)
T 3cc8_A           24 NLLKHIKKEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPY-----   89 (230)
T ss_dssp             HHHTTCCTTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCS-----
T ss_pred             HHHHHhccCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCC-----
Confidence            3444433578899999999998888877764 79999999999999887654        2678899875  233     


Q ss_pred             hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccC
Q 018352          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR  180 (357)
Q Consensus       101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~  180 (357)
                       .+++||+|+|..++|+ +.+   ...+++++.++|+|||++++++|+......... ..   .  +      .+.    
T Consensus        90 -~~~~fD~v~~~~~l~~-~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~-~~---~--~------~~~----  148 (230)
T 3cc8_A           90 -EEEQFDCVIFGDVLEH-LFD---PWAVIEKVKPYIKQNGVILASIPNVSHISVLAP-LL---A--G------NWT----  148 (230)
T ss_dssp             -CTTCEEEEEEESCGGG-SSC---HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHH-HH---T--T------CCC----
T ss_pred             -CCCccCEEEECChhhh-cCC---HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHH-Hh---c--C------Cce----
Confidence             4578999999999998 433   458899999999999999999988754322111 00   0  0      000    


Q ss_pred             CccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHH---HhhHHHHHHHHHh
Q 018352          181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFY---DDNRALFAGMLMS  257 (357)
Q Consensus       181 ~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~---~~~~~~~~~~~~~  257 (357)
                         +    .  .     .|.     +.    .......+.+.+.++++++||+.+....+...+   ......+..++.+
T Consensus       149 ---~----~--~-----~~~-----~~----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~l~~~~~~  205 (230)
T 3cc8_A          149 ---Y----T--E-----YGL-----LD----KTHIRFFTFNEMLRMFLKAGYSISKVDRVYVDHKMYEPLIEELYGICKK  205 (230)
T ss_dssp             ---C----B--S-----SST-----TB----TTCCCCCCHHHHHHHHHHTTEEEEEEEEEECCCGGGHHHHHHHHHHHHH
T ss_pred             ---e----c--c-----CCC-----CC----cceEEEecHHHHHHHHHHcCCeEEEEEecccChhhccchHHHHHHHHHh
Confidence               0    0  0     000     00    001134578889999999999998776543332   2223334445555


Q ss_pred             cCCCCCCCCCCCChhHHHHHhhheeEEEEec
Q 018352          258 AGPNLIDPRGRLLPRSYDVLGLYSTFIFQKP  288 (357)
Q Consensus       258 ~~~~~~~~~g~l~~~e~e~~~lY~~f~F~K~  288 (357)
                      ++..        ...-.+..+...+..-+|+
T Consensus       206 ~~~~--------~~~~~~~~~~~~~v~a~k~  228 (230)
T 3cc8_A          206 YRLG--------SGFMAETVVFQYIIEAEKS  228 (230)
T ss_dssp             TTCC--------SCHHHHHTEEEEEEEEEEC
T ss_pred             hccc--------cccCCCcceEEEEEEeecc
Confidence            4421        2344555555555555554

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.67  E-value=2.8e-16  Score=143.28  Aligned_cols=145  Identities=20%  Similarity=0.228  Sum_probs=109.2

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC--chhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~--~~~~~l~~~~~~F  106 (357)
                      ++++.+|||||||+|..+..+...+. +|+|+|+|+.+++.|+++         +.++.+|+...  ++      .+++|
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~------~~~~f  102 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL------PDKYL  102 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS------CTTCB
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc------CCCCe
Confidence            35778999999999988877776654 899999999999998766         56778876442  22      45899


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI  186 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i  186 (357)
                      |+|+|..++|+ + ..++...+++++.++|||||++++.+++...+......                         |  
T Consensus       103 D~i~~~~~l~~-~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-------------------------~--  153 (240)
T 3dli_A          103 DGVMISHFVEH-L-DPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINF-------------------------Y--  153 (240)
T ss_dssp             SEEEEESCGGG-S-CGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHH-------------------------T--
T ss_pred             eEEEECCchhh-C-CcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHH-------------------------h--
Confidence            99999999998 4 34456889999999999999999999887554332110                         0  


Q ss_pred             EeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCch
Q 018352          187 TFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (357)
Q Consensus       187 ~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~  241 (357)
                             ..+            .    ..+..+.+.+.++++++||+.+....+.
T Consensus       154 -------~~~------------~----~~~~~~~~~l~~~l~~aGf~~~~~~~~~  185 (240)
T 3dli_A          154 -------IDP------------T----HKKPVHPETLKFILEYLGFRDVKIEFFE  185 (240)
T ss_dssp             -------TST------------T----CCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             -------cCc------------c----ccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence                   000            0    0134466889999999999999877654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.67  E-value=3.9e-16  Score=141.73  Aligned_cols=108  Identities=20%  Similarity=0.263  Sum_probs=88.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      +..+|||+|||+|..+..++. ...+|+|+|+|+.+++.|+++........+++|+++|+.....       ..+||+|+
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~fD~v~  137 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP-------TELFDLIF  137 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC-------SSCEEEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC-------CCCeeEEE
Confidence            456999999999988776644 4458999999999999999998764333479999999987542       46899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |..++|+ + +.++...+++++.++|||||++++...+
T Consensus       138 ~~~~l~~-~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~  173 (235)
T 3lcc_A          138 DYVFFCA-I-EPEMRPAWAKSMYELLKPDGELITLMYP  173 (235)
T ss_dssp             EESSTTT-S-CGGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EChhhhc-C-CHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence            9999998 4 3556789999999999999999986443

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.66  E-value=6.7e-16  Score=138.13  Aligned_cols=108  Identities=20%  Similarity=0.234  Sum_probs=93.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|..+..++... .+|+|+|+|+.+++.|+++.....   +++|+++|+....       .+++||+|+
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-------~~~~fD~v~  119 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS-------TAELFDLIV  119 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC-------CSCCEEEEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC-------CCCCccEEE
Confidence            56799999999998888776665 499999999999999999986542   7899999997754       257899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      |..++|| +.+.+....+++++.++|||||+++++++...
T Consensus       120 ~~~~l~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  158 (216)
T 3ofk_A          120 VAEVLYY-LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDA  158 (216)
T ss_dssp             EESCGGG-SSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             EccHHHh-CCCHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence            9999999 66777788999999999999999999877654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.66  E-value=9.3e-16  Score=139.00  Aligned_cols=126  Identities=18%  Similarity=0.256  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc
Q 018352           15 RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (357)
Q Consensus        15 ~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~   94 (357)
                      .+..++...+ .....++.+|||+|||+|..+..++..+ .+++|+|+|+.|++.|+++....+.  ++.++++|+...+
T Consensus        22 ~~~~~~~~~l-~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~   97 (246)
T 1y8c_A           22 KWSDFIIEKC-VENNLVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN   97 (246)
T ss_dssp             HHHHHHHHHH-HTTTCCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC
T ss_pred             HHHHHHHHHH-HHhCCCCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCC
Confidence            3444544443 3333467899999999998888776664 4899999999999999999876533  6889999987655


Q ss_pred             hhhhhhhcCCcccEEEEcc-chhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352           95 FETQMQEKANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus        95 ~~~~l~~~~~~FDlV~~~~-~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      +      . ++||+|+|.. ++|| +.+.++...++++++++|+|||++++.+++...+
T Consensus        98 ~------~-~~fD~v~~~~~~l~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  148 (246)
T 1y8c_A           98 I------N-RKFDLITCCLDSTNY-IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKL  148 (246)
T ss_dssp             C------S-CCEEEEEECTTGGGG-CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHH
T ss_pred             c------c-CCceEEEEcCccccc-cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHH
Confidence            4      3 7899999998 9999 5566788999999999999999999999987654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.66  E-value=5.2e-16  Score=142.32  Aligned_cols=108  Identities=16%  Similarity=0.119  Sum_probs=93.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....+...+++++++|+...++      .+++||+|
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~fD~v  118 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF------QNEELDLI  118 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS------CTTCEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC------CCCCEEEE
Confidence            467899999999999888888776569999999999999999998876655569999999977665      46899999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +|..++|+ +    +...+++++.++|||||+++++.++
T Consensus       119 ~~~~~l~~-~----~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          119 WSEGAIYN-I----GFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             EEESCSCC-C----CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             EecChHhh-c----CHHHHHHHHHHHcCCCcEEEEEEee
Confidence            99999998 3    2567999999999999999998754

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.66  E-value=3.5e-16  Score=145.24  Aligned_cols=109  Identities=13%  Similarity=0.094  Sum_probs=87.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHh----------c------CCCceeEEEEcCCCCC
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN----------Q------RKNFIAEFFEADPCAE   93 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~----------~------~~~~~v~f~~~D~~~~   93 (357)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.||+.|+++...          .      ....+++|+++|+...
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            4678999999999999888877765 999999999999999887641          0      0123789999999875


Q ss_pred             chhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus        94 ~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +..     ..++||+|++..++++ + +.+....++++++++|||||+|++.+
T Consensus       146 ~~~-----~~~~FD~V~~~~~l~~-l-~~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          146 PRA-----NIGKFDRIWDRGALVA-I-NPGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             GGG-----CCCCEEEEEESSSTTT-S-CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Ccc-----cCCCEEEEEEhhhhhh-C-CHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            541     1278999999998888 4 45567789999999999999997553

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.65  E-value=5.8e-16  Score=143.46  Aligned_cols=108  Identities=16%  Similarity=0.124  Sum_probs=93.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..++..+..+|+|+|+|+.+++.|+++.+..+...+++|+++|+...++      ..++||+|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~i  118 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF------RNEELDLI  118 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC------CTTCEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC------CCCCEEEE
Confidence            478899999999999888887776669999999999999999998876655579999999987665      46899999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +|..++|+ +    +...+++++.++|||||+++++.++
T Consensus       119 ~~~~~~~~-~----~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          119 WSEGAIYN-I----GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             EESSCGGG-T----CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             EEcCCcee-c----CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            99999998 3    3577899999999999999998654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.65  E-value=1.9e-15  Score=138.36  Aligned_cols=120  Identities=27%  Similarity=0.389  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (357)
Q Consensus        18 nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~   97 (357)
                      +|+...+-.....++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|+++....+.  ++.++++|+...++  
T Consensus        28 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~--  102 (252)
T 1wzn_A           28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF--  102 (252)
T ss_dssp             HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC--
T ss_pred             HHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhccc--
Confidence            444443332223467899999999998888887765 4999999999999999999876533  68999999876543  


Q ss_pred             hhhhcCCcccEEEEccc-hhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           98 QMQEKANQADLVCCFQH-LQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        98 ~l~~~~~~FDlV~~~~~-lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                           .++||+|+|.++ +++ + +.++...+++++.++|+|||++++.+|+.
T Consensus       103 -----~~~fD~v~~~~~~~~~-~-~~~~~~~~l~~~~~~L~pgG~li~~~~~~  148 (252)
T 1wzn_A          103 -----KNEFDAVTMFFSTIMY-F-DEEDLRKLFSKVAEALKPGGVFITDFPCW  148 (252)
T ss_dssp             -----CSCEEEEEECSSGGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred             -----CCCccEEEEcCCchhc-C-CHHHHHHHHHHHHHHcCCCeEEEEeccch
Confidence                 368999999765 444 4 67788999999999999999999988873

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.65  E-value=9.6e-16  Score=140.45  Aligned_cols=109  Identities=20%  Similarity=0.218  Sum_probs=92.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||||||+|..+..++.....+++|+|+|+.|++.|+++.+..+...++.|+++|+...++       +++||+
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~fD~  106 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-------NEKCDV  106 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-------SSCEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-------CCCCCE
Confidence            4578899999999998888887765559999999999999999998776554479999999977543       478999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|..++|+ +.   +...+|++++++|||||+++++.+.
T Consensus       107 V~~~~~~~~-~~---~~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A          107 AACVGATWI-AG---GFAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             EEEESCGGG-TS---SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             EEECCChHh-cC---CHHHHHHHHHHHcCCCeEEEEecCc
Confidence            999999988 43   3678899999999999999998654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.6e-15  Score=142.96  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=90.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHH--hcCCeEEEEeCChHHHHHHHHHhHhc-CCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~--~~~~~v~GiDiS~~~l~~A~~r~~~~-~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      ..++.+|||||||+|..+..++.  .+..+|+|+|+|+.+++.|+++.+.. ....+++|+++|+...++........++
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  113 (299)
T 3g5t_A           34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK  113 (299)
T ss_dssp             CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence            45789999999999998888876  46779999999999999999998764 2234799999999886652100001279


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ||+|+|..++|+ +    +...+++++.++|||||++++.
T Consensus       114 fD~V~~~~~l~~-~----~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          114 IDMITAVECAHW-F----DFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             EEEEEEESCGGG-S----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeEEeHhhHHHH-h----CHHHHHHHHHHhcCCCcEEEEE
Confidence            999999999999 4    4678999999999999999873

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.64  E-value=3.6e-15  Score=132.85  Aligned_cols=105  Identities=20%  Similarity=0.142  Sum_probs=88.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|++  ..   ..++.++++|+... +      ..++||+|
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~--~~---~~~~~~~~~d~~~~-~------~~~~~D~v  111 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGR--HG---LDNVEFRQQDLFDW-T------PDRQWDAV  111 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGG--GC---CTTEEEEECCTTSC-C------CSSCEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHh--cC---CCCeEEEecccccC-C------CCCceeEE
Confidence            467899999999998888887774 499999999999999987  11   13689999999775 3      46899999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +|..++|+ + ..+....++++++++|||||+++++.++.
T Consensus       112 ~~~~~l~~-~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          112 FFAHWLAH-V-PDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             EEESCGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EEechhhc-C-CHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            99999999 4 34557899999999999999999997665

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.64  E-value=1.3e-15  Score=135.79  Aligned_cols=115  Identities=20%  Similarity=0.277  Sum_probs=95.0

Q ss_pred             HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      .++..+..++.+|||+|||+|..+..+   +..+++|+|+|+.|++.|+++.  .    ++.++++|+...++      .
T Consensus        28 ~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~--~----~~~~~~~d~~~~~~------~   92 (211)
T 2gs9_A           28 RALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA--P----EATWVRAWGEALPF------P   92 (211)
T ss_dssp             HHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC--T----TSEEECCCTTSCCS------C
T ss_pred             HHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC--C----CcEEEEcccccCCC------C
Confidence            456666678899999999999777665   4448999999999999999887  2    57889999887665      4


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                      +++||+|+|..++|+ +.   +..++++++.++|||||++++++++....+...
T Consensus        93 ~~~fD~v~~~~~l~~-~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~  142 (211)
T 2gs9_A           93 GESFDVVLLFTTLEF-VE---DVERVLLEARRVLRPGGALVVGVLEALSPWAAL  142 (211)
T ss_dssp             SSCEEEEEEESCTTT-CS---CHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHH
T ss_pred             CCcEEEEEEcChhhh-cC---CHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHH
Confidence            678999999999998 43   466899999999999999999998886665544

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.64  E-value=2.2e-15  Score=135.19  Aligned_cols=115  Identities=23%  Similarity=0.304  Sum_probs=95.5

Q ss_pred             HHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      ..+++++.+|||+|||+|..+..++.... +++|+|+|+.+++.|+++.+...  .+++++++|+...++      ..++
T Consensus        33 ~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~------~~~~  103 (227)
T 1ve3_A           33 MKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSF------EDKT  103 (227)
T ss_dssp             HHSCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCS------CTTC
T ss_pred             HHhcCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCC------CCCc
Confidence            34556688999999999988877766655 99999999999999999887653  378999999987554      4578


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~  151 (357)
                      ||+|+|..++|+ + +..+...++++++++|+|||++++..++...
T Consensus       104 ~D~v~~~~~~~~-~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  147 (227)
T 1ve3_A          104 FDYVIFIDSIVH-F-EPLELNQVFKEVRRVLKPSGKFIMYFTDLRE  147 (227)
T ss_dssp             EEEEEEESCGGG-C-CHHHHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             EEEEEEcCchHh-C-CHHHHHHHHHHHHHHcCCCcEEEEEecChHH
Confidence            999999988665 2 5677889999999999999999999888643

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.64  E-value=2.3e-15  Score=143.07  Aligned_cols=109  Identities=16%  Similarity=0.109  Sum_probs=94.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++.+..+...+++|+++|+...++      .+++||+|
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~V  189 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF------DKGAVTAS  189 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC------CTTCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC------CCCCEeEE
Confidence            467899999999998888887763469999999999999999998877655579999999987665      46899999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +|..++|+ + +   ...+++++.++|||||++++++++.
T Consensus       190 ~~~~~l~~-~-~---~~~~l~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          190 WNNESTMY-V-D---LHDLFSEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             EEESCGGG-S-C---HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EECCchhh-C-C---HHHHHHHHHHHcCCCcEEEEEEccc
Confidence            99999998 4 3   7889999999999999999887654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.64  E-value=5.4e-15  Score=134.91  Aligned_cols=108  Identities=19%  Similarity=0.284  Sum_probs=89.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++... .+|+|+|+|+.|++.|+++....+.. ++.|+++|+...++      .+++||+
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~fD~   90 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPF------PDDSFDI   90 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCS------CTTCEEE
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCC------CCCcEEE
Confidence            4578899999999998777776554 49999999999999999988765432 68999999977665      4689999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|..++|+ +.   +...+++++.++|||||+++++.+.
T Consensus        91 v~~~~~l~~-~~---~~~~~l~~~~~~LkpgG~l~~~~~~  126 (239)
T 1xxl_A           91 ITCRYAAHH-FS---DVRKAVREVARVLKQDGRFLLVDHY  126 (239)
T ss_dssp             EEEESCGGG-CS---CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEECCchhh-cc---CHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            999999998 53   3568899999999999999987443

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.64  E-value=1.5e-15  Score=137.77  Aligned_cols=114  Identities=17%  Similarity=0.245  Sum_probs=96.1

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..++++.+|||+|||+|..+..++..  .+++|+|+|+.+++.|+++....+  .++.++++|+...++       .++|
T Consensus        29 ~~~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~-------~~~f   97 (243)
T 3d2l_A           29 EQVEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELEL-------PEPV   97 (243)
T ss_dssp             HHSCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCC-------SSCE
T ss_pred             HHcCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCC-------CCCc
Confidence            44667899999999999887777655  699999999999999999987543  368999999876544       3789


Q ss_pred             cEEEEcc-chhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          107 DLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       107 DlV~~~~-~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      |+|+|.. ++|| +.+.++...+++++.++|+|||++++.+++...+
T Consensus        98 D~v~~~~~~~~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  143 (243)
T 3d2l_A           98 DAITILCDSLNY-LQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKM  143 (243)
T ss_dssp             EEEEECTTGGGG-CCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred             CEEEEeCCchhh-cCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHH
Confidence            9999987 8898 5577889999999999999999999999887554

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.63  E-value=3.3e-15  Score=131.39  Aligned_cols=126  Identities=13%  Similarity=0.011  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch
Q 018352           16 LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (357)
Q Consensus        16 ~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~   95 (357)
                      +..++...+......++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++.+..+. .+++++++|+.....
T Consensus        29 ~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~  107 (189)
T 3p9n_A           29 VRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVA  107 (189)
T ss_dssp             HHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHh
Confidence            3344444443333346789999999999888877777777999999999999999999877654 478999999754221


Q ss_pred             hhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHh--cccCCcEEEEEeCCc
Q 018352           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPDS  149 (357)
Q Consensus        96 ~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~--~LkpGG~fi~t~pd~  149 (357)
                        .+  ..++||+|++...+|+   ..+....+++.+.+  +|+|||++++.++..
T Consensus       108 --~~--~~~~fD~i~~~~p~~~---~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          108 --AG--TTSPVDLVLADPPYNV---DSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             --HC--CSSCCSEEEECCCTTS---CHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             --hc--cCCCccEEEECCCCCc---chhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence              11  2578999999887666   34678889999999  999999999987654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.63  E-value=1.3e-15  Score=135.18  Aligned_cols=111  Identities=16%  Similarity=0.157  Sum_probs=92.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++.....+|+|+|+|+.|++.|+++.....  .++.++++|+...++      ++++||+
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~------~~~~fD~   92 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPF------KDESMSF   92 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCS------CTTCEEE
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCC------CCCceeE
Confidence            45678999999999977455545555699999999999999999887543  268899999987665      4678999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |+|..++|+ + +.++...++++++++|||||++++..++.
T Consensus        93 v~~~~~l~~-~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           93 VYSYGTIFH-M-RKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             EEECSCGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             EEEcChHHh-C-CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            999999988 4 46788999999999999999999987653

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.62  E-value=1.4e-15  Score=142.68  Aligned_cols=114  Identities=17%  Similarity=0.124  Sum_probs=84.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC-----------------------------c
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-----------------------------F   81 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-----------------------------~   81 (357)
                      ++.+|||||||+|............+|+|+|+|+.|++.|+++.+.....                             .
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            67899999999997332222234569999999999999998865431100                             0


Q ss_pred             eeEEEEcCCCC-CchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           82 IAEFFEADPCA-ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        82 ~v~f~~~D~~~-~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+.++++|+.. .++... ..++++||+|+|.+++|++..+.++..++|++++++|||||+|+++
T Consensus       151 ~~~~~~~D~~~~~~~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~  214 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAG-SPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  214 (289)
T ss_dssp             EEEEECCCTTSSSTTCSS-CSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hceEEecccCCCCCcccc-ccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            25677889876 433110 0034679999999999985555678899999999999999999987

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.62  E-value=2.7e-15  Score=131.08  Aligned_cols=118  Identities=10%  Similarity=0.034  Sum_probs=88.2

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      ++...+.++.+|||+|||+|..+..++.. ..+|+|+|+|+.|++.|+++.+..+. .+++|++.|......   .  .+
T Consensus        15 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~---~--~~   87 (185)
T 3mti_A           15 FLAEVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDH---Y--VR   87 (185)
T ss_dssp             HHHTTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGG---T--CC
T ss_pred             HHHHhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHh---h--cc
Confidence            34556778899999999999888887766 67999999999999999999887654 478899866543211   1  35


Q ss_pred             CcccEEEEccch-hh----ccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          104 NQADLVCCFQHL-QM----CFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       104 ~~FDlV~~~~~l-h~----~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ++||+|++.... +.    .....+....+++++.++|||||++++....
T Consensus        88 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           88 EPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             SCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             CCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            789999876422 11    1113466778999999999999999988543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.62  E-value=7e-16  Score=140.59  Aligned_cols=112  Identities=16%  Similarity=0.008  Sum_probs=88.1

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC--chhhhhhhcCC
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKAN  104 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~--~~~~~l~~~~~  104 (357)
                      ....++.+|||||||+|..+..++..+..+|+|+|+|+.|++.|+++.+..+  .++.++++|+...  ++      .++
T Consensus        56 ~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~------~~~  127 (236)
T 1zx0_A           56 AASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL------PDG  127 (236)
T ss_dssp             HHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS------CTT
T ss_pred             hcCCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhccc------CCC
Confidence            3346788999999999988887755555689999999999999999887653  4789999998653  33      458


Q ss_pred             cccEEEE-ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          105 QADLVCC-FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       105 ~FDlV~~-~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +||+|++ .++++....+......++++++++|||||+|++..
T Consensus       128 ~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          128 HFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            9999999 66543222245566788999999999999998764

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.62  E-value=4.4e-15  Score=131.04  Aligned_cols=120  Identities=16%  Similarity=0.116  Sum_probs=94.5

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~  101 (357)
                      ++...+.++.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.|+++++..+...+++++++|+.....     .
T Consensus        15 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~   89 (197)
T 3eey_A           15 YIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-----Y   89 (197)
T ss_dssp             HHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-----T
T ss_pred             HHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-----h
Confidence            44456678899999999999888888776  4569999999999999999998876544579999999855331     0


Q ss_pred             cCCcccEEEEccch-----hhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          102 KANQADLVCCFQHL-----QMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       102 ~~~~FDlV~~~~~l-----h~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      .+++||+|++...+     +......+....+++++.++|||||++++....
T Consensus        90 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           90 IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            34789999988754     222345666778999999999999999988543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.62  E-value=3.3e-15  Score=133.79  Aligned_cols=105  Identities=16%  Similarity=0.111  Sum_probs=88.9

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.|+++..     .++.++++|+...++      . ++||+|
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~------~-~~fD~v  110 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEV------P-TSIDTI  110 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCC------C-SCCSEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCC------C-CCeEEE
Confidence            367899999999998888887764 599999999999999999876     267899999987655      4 789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +|..++|+ + .......+++++.++|||||+++++.++.
T Consensus       111 ~~~~~l~~-~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          111 VSTYAFHH-L-TDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             EEESCGGG-S-CHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             EECcchhc-C-ChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            99999999 4 34445669999999999999999997654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.62  E-value=3.3e-15  Score=139.30  Aligned_cols=102  Identities=25%  Similarity=0.287  Sum_probs=86.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..++. ...+|+|+|+|+.|++.|+++..      ++.|.++|+...++       +++||+|
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-------~~~fD~v  121 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNYP------HLHFDVADARNFRV-------DKPLDAV  121 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCT------TSCEEECCTTTCCC-------SSCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhCC------CCEEEECChhhCCc-------CCCcCEE
Confidence            4678999999999988888777 55699999999999999988762      57889999977554       4789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +|..++|+ +.   +...++++++++|||||++++.+++.
T Consensus       122 ~~~~~l~~-~~---d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          122 FSNAMLHW-VK---EPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             EEESCGGG-CS---CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEcchhhh-Cc---CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            99999998 43   35688999999999999999988765

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.61  E-value=1.2e-15  Score=138.49  Aligned_cols=105  Identities=23%  Similarity=0.256  Sum_probs=90.3

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||||||+|..+..++..+..+|+|+|+|+.+++.|+++....    ++.++++|+...++      ..++||+|+
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~~------~~~~fD~v~  112 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT----GITYERADLDKLHL------PQDSFDLAY  112 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS----SEEEEECCGGGCCC------CTTCEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC----CceEEEcChhhccC------CCCCceEEE
Confidence            67899999999998888887776559999999999999999887543    68999999876554      467899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |..++|+ +.   +...++++++++|+|||++++++++.
T Consensus       113 ~~~~l~~-~~---~~~~~l~~~~~~L~pgG~l~~~~~~~  147 (243)
T 3bkw_A          113 SSLALHY-VE---DVARLFRTVHQALSPGGHFVFSTEHP  147 (243)
T ss_dssp             EESCGGG-CS---CHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             Eeccccc-cc---hHHHHHHHHHHhcCcCcEEEEEeCCc
Confidence            9999998 43   46689999999999999999998875

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.61  E-value=5e-14  Score=130.46  Aligned_cols=118  Identities=14%  Similarity=0.075  Sum_probs=89.4

Q ss_pred             HHHHHc-CCCCCEEEEECCCCChhHHHHHHhc-C-CeEEEEeCChH------HHHHHHHHhHhcCCCceeEEEEcC-CCC
Q 018352           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETAL-I-ANYIGIDVATS------GIGEARDTWENQRKNFIAEFFEAD-PCA   92 (357)
Q Consensus        23 ~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~~-~-~~v~GiDiS~~------~l~~A~~r~~~~~~~~~v~f~~~D-~~~   92 (357)
                      .++..+ +.++.+|||||||+|..+..++... . .+|+|+|+|+.      +++.|+++++..+...+++++++| ...
T Consensus        34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  113 (275)
T 3bkx_A           34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD  113 (275)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT
T ss_pred             HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh
Confidence            344443 4678999999999999888887763 2 69999999997      999999998765544579999998 322


Q ss_pred             CchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352           93 ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus        93 ~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ..+    +..+++||+|+|..++|+ +.+..   .+++.+.++++|||++++....
T Consensus       114 ~~~----~~~~~~fD~v~~~~~l~~-~~~~~---~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          114 DLG----PIADQHFDRVVLAHSLWY-FASAN---ALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             CCG----GGTTCCCSEEEEESCGGG-SSCHH---HHHHHHHHHTTTCSEEEEEEEC
T ss_pred             ccC----CCCCCCEEEEEEccchhh-CCCHH---HHHHHHHHHhCCCCEEEEEEec
Confidence            222    114588999999999998 55543   4677777888889999988543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.61  E-value=6.9e-15  Score=133.02  Aligned_cols=110  Identities=15%  Similarity=0.229  Sum_probs=91.8

Q ss_pred             HHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      +..+..++.+|||+|||+|..+..++.... +++|+|+|+.|++.|+++..      ++.++++|+...++       .+
T Consensus        34 l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-------~~   99 (239)
T 3bxo_A           34 VRSRTPEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP------DATLHQGDMRDFRL-------GR   99 (239)
T ss_dssp             HHHHCTTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT------TCEEEECCTTTCCC-------SS
T ss_pred             HHHhcCCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC------CCEEEECCHHHccc-------CC
Confidence            344456788999999999988888877655 99999999999999998753      47899999877543       46


Q ss_pred             cccEEEEcc-chhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          105 QADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       105 ~FDlV~~~~-~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +||+|+|.+ ++|| +.+.++...++++++++|+|||+++++.++.
T Consensus       100 ~~D~v~~~~~~~~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A          100 KFSAVVSMFSSVGY-LKTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             CEEEEEECTTGGGG-CCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             CCcEEEEcCchHhh-cCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            899999765 7888 5577888999999999999999999986654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.61  E-value=1.7e-15  Score=143.07  Aligned_cols=117  Identities=17%  Similarity=0.229  Sum_probs=90.3

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCC------------------------------
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK------------------------------   79 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~------------------------------   79 (357)
                      ++.+|||||||+|..+..++.. +..+|+|+|+|+.||+.|+++.+....                              
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            4789999999999888888776 567999999999999999987654221                              


Q ss_pred             ---------------------------CceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccC---CHHHHHHHH
Q 018352           80 ---------------------------NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE---TEERARRLL  129 (357)
Q Consensus        80 ---------------------------~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fe---s~~~~~~~L  129 (357)
                                                 ..+++|.++|+...... .+....++||+|+|..+++| +.   +.+...+++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~-~~~~~~~~fD~I~~~~vl~~-ihl~~~~~~~~~~l  203 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDD-LVEAQTPEYDVVLCLSLTKW-VHLNWGDEGLKRMF  203 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHH-HHTTCCCCEEEEEEESCHHH-HHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccc-cccccCCCcCEEEEChHHHH-hhhcCCHHHHHHHH
Confidence                                       13799999998765411 11113589999999999877 31   455788999


Q ss_pred             HHHHhcccCCcEEEEEeCCc
Q 018352          130 QNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       130 ~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ++++++|+|||+|++...+.
T Consensus       204 ~~~~~~LkpGG~lil~~~~~  223 (292)
T 3g07_A          204 RRIYRHLRPGGILVLEPQPW  223 (292)
T ss_dssp             HHHHHHEEEEEEEEEECCCH
T ss_pred             HHHHHHhCCCcEEEEecCCc
Confidence            99999999999999986553

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.61  E-value=2e-15  Score=137.74  Aligned_cols=109  Identities=12%  Similarity=0.109  Sum_probs=90.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....+ ..++.++++|+...++      ..++||+|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~------~~~~fD~v~  151 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTP------EPDSYDVIW  151 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCC------CSSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCC------CCCCEEEEE
Confidence            578999999999988877766666699999999999999999986542 2368899999876554      456899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |..++|+ + ..+....+++++.++|||||+++++.+.
T Consensus       152 ~~~~l~~-~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          152 IQWVIGH-L-TDQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             EESCGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             Ecchhhh-C-CHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            9999998 4 3455678999999999999999998654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.60  E-value=1e-14  Score=127.04  Aligned_cols=112  Identities=17%  Similarity=0.184  Sum_probs=94.2

Q ss_pred             HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      .++..+++++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.|+++..      ++.++++|+...++      +
T Consensus        38 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~~------~  104 (195)
T 3cgg_A           38 RLIDAMAPRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQI------S  104 (195)
T ss_dssp             HHHHHHSCTTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSCC------C
T ss_pred             HHHHHhccCCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCCC------C
Confidence            5777778889999999999998888887764 599999999999999998863      47889999987554      4


Q ss_pred             CCcccEEEEc-cchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          103 ANQADLVCCF-QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       103 ~~~FDlV~~~-~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .++||+|+|. ..+|+ + +.+....+++++.++|+|||++++..++.
T Consensus       105 ~~~~D~i~~~~~~~~~-~-~~~~~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          105 ETDFDLIVSAGNVMGF-L-AEDGREPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             CCCEEEEEECCCCGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             CCceeEEEECCcHHhh-c-ChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            5789999998 56776 3 56778899999999999999999986653

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.59  E-value=2.9e-15  Score=136.65  Aligned_cols=113  Identities=18%  Similarity=0.180  Sum_probs=90.8

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++.... +|+|+|+|+.|++.|+++....    ++.|+++|+........+.. ...||+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~~~~~~~~-~~~~d~  127 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAA----NISYRLLDGLVPEQAAQIHS-EIGDAN  127 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCCT----TEEEEECCTTCHHHHHHHHH-HHCSCE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCccc----CceEEECccccccccccccc-ccCccE
Confidence            45778999999999998888877766 9999999999999999987433    78999999987554322211 235999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |+|..++|+ + +.++...+++++.++|||||++++..+..
T Consensus       128 v~~~~~~~~-~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          128 IYMRTGFHH-I-PVEKRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             EEEESSSTT-S-CGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             EEEcchhhc-C-CHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            999999998 4 44567899999999999999988775443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.59  E-value=1e-14  Score=128.98  Aligned_cols=108  Identities=14%  Similarity=0.118  Sum_probs=89.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++++ +|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++....+.  ++.++++|+...++      .+++||+
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~------~~~~fD~   97 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDI------VADAWEG   97 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSC------CTTTCSE
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCC------CcCCccE
Confidence            4566 99999999998887776654 4999999999999999999876533  78999999987654      4578999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      |+|.+ .|+   +.++...+++++.++|+|||++++.+++..
T Consensus        98 v~~~~-~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A           98 IVSIF-CHL---PSSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             EEEEC-CCC---CHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             EEEEh-hcC---CHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            99854 233   677889999999999999999999987753

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.59  E-value=4.4e-15  Score=132.41  Aligned_cols=103  Identities=18%  Similarity=0.133  Sum_probs=87.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++.       ++.+..+|+...+       .+++||+
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-------~~~~fD~  105 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-------AIDAYDA  105 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-------CCSCEEE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcC-CeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-------CCCcEEE
Confidence            4578899999999998888887764 49999999999999999887       3456788876543       2589999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|..++|+ + ..++...+++++.++|||||+++++++.
T Consensus       106 v~~~~~l~~-~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A          106 VWAHACLLH-V-PRDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             EEECSCGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEecCchhh-c-CHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            999999999 4 4677889999999999999999998655

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.59  E-value=1.9e-14  Score=132.89  Aligned_cols=114  Identities=16%  Similarity=0.160  Sum_probs=90.9

Q ss_pred             HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      .++..+++++.+|||||||+|..+..++..+ .+++|+|+|+.|++.|+++...       .++++|+...++      .
T Consensus        46 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~-------~~~~~d~~~~~~------~  111 (260)
T 2avn_A           46 SFLEEYLKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGVK-------NVVEAKAEDLPF------P  111 (260)
T ss_dssp             HHHHHHCCSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTCS-------CEEECCTTSCCS------C
T ss_pred             HHHHHhcCCCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHHHHHHhhcCC-------CEEECcHHHCCC------C
Confidence            3445555678899999999998888776664 5899999999999999988641       278999877665      4


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHH
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~  153 (357)
                      +++||+|+|...+++...+   ...+++++.++|||||++++++++....+
T Consensus       112 ~~~fD~v~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  159 (260)
T 2avn_A          112 SGAFEAVLALGDVLSYVEN---KDKAFSEIRRVLVPDGLLIATVDNFYTFL  159 (260)
T ss_dssp             TTCEEEEEECSSHHHHCSC---HHHHHHHHHHHEEEEEEEEEEEEBHHHHH
T ss_pred             CCCEEEEEEcchhhhcccc---HHHHHHHHHHHcCCCeEEEEEeCChHHHH
Confidence            6889999998765542333   77899999999999999999999875443

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.58  E-value=6.1e-15  Score=135.42  Aligned_cols=115  Identities=17%  Similarity=0.117  Sum_probs=90.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC----------------------------c
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN----------------------------F   81 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~----------------------------~   81 (357)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++.+.....                            .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            356799999999998777665555458999999999999999987653210                            0


Q ss_pred             ee-EEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352           82 IA-EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus        82 ~v-~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ++ .++++|+........  ...++||+|+|.+++|++..+.++...++++++++|||||+|++..
T Consensus       135 ~v~~~~~~d~~~~~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGG--VSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HEEEEEECCTTSSSTTTT--CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hheeEEEeeeccCCCCCc--cccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence            27 899999977533110  0127899999999999766567789999999999999999999886

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.58  E-value=1.3e-14  Score=133.14  Aligned_cols=107  Identities=17%  Similarity=0.133  Sum_probs=88.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++.. ..+|+|+|+|+.|++.|+++...  ...++.|+++|+...++      .+++||+
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~------~~~~fD~  107 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKIAG--VDRKVQVVQADARAIPL------PDESVHG  107 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHTTT--SCTTEEEEESCTTSCCS------CTTCEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhc--cCCceEEEEcccccCCC------CCCCeeE
Confidence            457789999999999888887766 45999999999999999998722  12378999999977665      4678999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|..++|+ +.   +...+++++.++|||||++++..++
T Consensus       108 v~~~~~l~~-~~---~~~~~l~~~~~~L~pgG~l~~~~~~  143 (263)
T 2yqz_A          108 VIVVHLWHL-VP---DWPKVLAEAIRVLKPGGALLEGWDQ  143 (263)
T ss_dssp             EEEESCGGG-CT---THHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEECCchhh-cC---CHHHHHHHHHHHCCCCcEEEEEecC
Confidence            999999999 53   4668899999999999999987433

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.58  E-value=9.7e-15  Score=131.35  Aligned_cols=148  Identities=16%  Similarity=0.190  Sum_probs=109.1

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      ++..+.+ +.+|||+|||+|..+..+...     +|+|+|+.+++.|+++        ++.++++|+...++      ..
T Consensus        41 ~l~~~~~-~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~------~~  100 (219)
T 1vlm_A           41 AVKCLLP-EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPL------KD  100 (219)
T ss_dssp             HHHHHCC-SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCS------CT
T ss_pred             HHHHhCC-CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCC------CC
Confidence            3445554 889999999999887766432     9999999999999876        46789999877554      45


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCcc
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES  183 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~  183 (357)
                      ++||+|+|..++|+ +.   +...+++++.++|+|||+++++.++....+.......     .        .+.      
T Consensus       101 ~~fD~v~~~~~l~~-~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~-----~--------~~~------  157 (219)
T 1vlm_A          101 ESFDFALMVTTICF-VD---DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKN-----K--------EKS------  157 (219)
T ss_dssp             TCEEEEEEESCGGG-SS---CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHT-----T--------TC-------
T ss_pred             CCeeEEEEcchHhh-cc---CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHH-----h--------cCc------
Confidence            78999999999998 43   3568999999999999999999887755544332110     0        000      


Q ss_pred             EEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCc
Q 018352          184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (357)
Q Consensus       184 y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f  240 (357)
                                  +.++              .....+.+.+.++++++||+.+.....
T Consensus       158 ------------~~~~--------------~~~~~~~~~l~~~l~~~Gf~~~~~~~~  188 (219)
T 1vlm_A          158 ------------VFYK--------------NARFFSTEELMDLMRKAGFEEFKVVQT  188 (219)
T ss_dssp             ------------CCST--------------TCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ------------chhc--------------ccccCCHHHHHHHHHHCCCeEEEEecc
Confidence                        0000              013457888999999999999886644

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.58  E-value=9.3e-15  Score=136.64  Aligned_cols=104  Identities=20%  Similarity=0.202  Sum_probs=89.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.|+++....+.  ++.++++|+....+       .++||+|+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-------~~~fD~i~  189 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-------QENYDFIV  189 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-------CSCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-------cCCccEEE
Confidence            678999999999998888877755 999999999999999999887654  78999999876443       47899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |..++|+ + +.+....+++++.++|+|||++++..
T Consensus       190 ~~~~~~~-~-~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          190 STVVFMF-L-NRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             ECSSGGG-S-CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Eccchhh-C-CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999998 4 45667889999999999999977663

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.57  E-value=1.1e-14  Score=127.82  Aligned_cols=105  Identities=19%  Similarity=0.159  Sum_probs=87.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.|+++.+..+.. ++.++++|+...++       .++||+|+
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~-------~~~~D~v~  102 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTF-------DRQYDFIL  102 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCC-------CCCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCC-------CCCceEEE
Confidence            56799999999998888887764 49999999999999999988765432 58999999876443       47899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |..++|+ + +.++...+++++.++|||||++++..
T Consensus       103 ~~~~l~~-~-~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          103 STVVLMF-L-EAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EESCGGG-S-CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Ecchhhh-C-CHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            9999998 4 34567889999999999999987763

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.57  E-value=4.4e-15  Score=136.00  Aligned_cols=116  Identities=16%  Similarity=-0.017  Sum_probs=87.3

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      +......++.+|||||||+|..+..+++....+++|||+|+.+++.|+++.+...  .++.++.+|+.....  .  .++
T Consensus        53 ~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~--~--~~~  126 (236)
T 3orh_A           53 LAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAP--T--LPD  126 (236)
T ss_dssp             HHHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGG--G--SCT
T ss_pred             HHHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcc--c--ccc
Confidence            3344456889999999999988877766666789999999999999999987653  367888888643211  1  146


Q ss_pred             CcccEEEEccc-hhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          104 NQADLVCCFQH-LQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~-lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ++||.|++.-. ..+...+..+...++++++|+|||||+|++.
T Consensus       127 ~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          127 GHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             TCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            88999975321 2222345667889999999999999999875

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.57  E-value=1.4e-14  Score=134.34  Aligned_cols=109  Identities=22%  Similarity=0.327  Sum_probs=92.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||||||+|..+..++... ..+++|+|+|+.+++.|+++....+.. ++.|+.+|+...++      .+++||+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~------~~~~fD~  108 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPF------EDSSFDH  108 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCS------CTTCEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCC------CCCCeeE
Confidence            578899999999998888887763 569999999999999999998765432 68999999987665      4689999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |+|..++|+ +.+   ...+++++.++|||||+++++.++.
T Consensus       109 v~~~~~l~~-~~~---~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          109 IFVCFVLEH-LQS---PEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             EEEESCGGG-CSC---HHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             EEEechhhh-cCC---HHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            999999998 434   4578999999999999999987653

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.57  E-value=4.4e-14  Score=122.95  Aligned_cols=111  Identities=15%  Similarity=0.151  Sum_probs=92.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCc-eeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~-~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|..+..++.. ..+++|+|+|+.+++.|+++....+... ++.++++|+... +      ..++||+
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~~D~  122 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-V------KDRKYNK  122 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-C------TTSCEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-c------ccCCceE
Confidence            36789999999999888877766 6699999999999999999987654332 389999998762 2      2478999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~  151 (357)
                      |++...+|+   ..+....+++++.++|+|||++++.+++...
T Consensus       123 v~~~~~~~~---~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  162 (194)
T 1dus_A          123 IITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTKQG  162 (194)
T ss_dssp             EEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred             EEECCCccc---chhHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence            999887776   4567889999999999999999999888643

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.57  E-value=4.2e-14  Score=122.04  Aligned_cols=116  Identities=12%  Similarity=0.106  Sum_probs=89.2

Q ss_pred             HHHHHHc-CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh
Q 018352           22 TALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (357)
Q Consensus        22 s~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l   99 (357)
                      ..++... ..++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++.+..+...++ ++++|... .+    
T Consensus        15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~-~~----   88 (178)
T 3hm2_A           15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR-AF----   88 (178)
T ss_dssp             HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG-GG----
T ss_pred             HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh-hh----
Confidence            3344443 346789999999999888877666 3579999999999999999998776554467 88888754 33    


Q ss_pred             hhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~  151 (357)
                      +...++||+|++..++|+        ..+++++.++|+|||++++..+..+.
T Consensus        89 ~~~~~~~D~i~~~~~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~~  132 (178)
T 3hm2_A           89 DDVPDNPDVIFIGGGLTA--------PGVFAAAWKRLPVGGRLVANAVTVES  132 (178)
T ss_dssp             GGCCSCCSEEEECC-TTC--------TTHHHHHHHTCCTTCEEEEEECSHHH
T ss_pred             hccCCCCCEEEECCcccH--------HHHHHHHHHhcCCCCEEEEEeecccc
Confidence            112378999999987765        46899999999999999998776543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.57  E-value=4.5e-14  Score=127.51  Aligned_cols=118  Identities=15%  Similarity=0.094  Sum_probs=92.3

Q ss_pred             HHHcCCCCCEEEEECCC-CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC-chhhhhhhc
Q 018352           25 IKIYSHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEK  102 (357)
Q Consensus        25 i~~~~~~~~~VLDlGCG-~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~-~~~~~l~~~  102 (357)
                      +...+.++.+|||+||| +|..+..++.....+|+|+|+|+.+++.|+++.+..+.  +++++++|+... .+      .
T Consensus        49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~------~  120 (230)
T 3evz_A           49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGV------V  120 (230)
T ss_dssp             HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTT------C
T ss_pred             hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhc------c
Confidence            55666788999999999 99888877776456999999999999999999887654  789999997432 22      3


Q ss_pred             CCcccEEEEccchhhccC---------------CHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          103 ANQADLVCCFQHLQMCFE---------------TEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fe---------------s~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      +++||+|+|+..++..-.               ..+....+++++.++|||||++++.++...
T Consensus       121 ~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  183 (230)
T 3evz_A          121 EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE  183 (230)
T ss_dssp             CSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH
T ss_pred             cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH
Confidence            478999999876554110               112247899999999999999999888764

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.56  E-value=5.9e-15  Score=131.88  Aligned_cols=104  Identities=23%  Similarity=0.234  Sum_probs=81.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++   .    ++.+..+|+.....  .......+||+|+
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~---~----~~~~~~~~~~~~~~--~~~~~~~~fD~v~  121 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRG-IEAVGVDGDRTLVDAARAA---G----AGEVHLASYAQLAE--AKVPVGKDYDLIC  121 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHT---C----SSCEEECCHHHHHT--TCSCCCCCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCC-CEEEEEcCCHHHHHHHHHh---c----ccccchhhHHhhcc--cccccCCCccEEE
Confidence            56899999999998887776664 4999999999999999887   1    45677777644210  0001245699999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |..++|.     .+...++++++++|||||++++++++.
T Consensus       122 ~~~~l~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~  155 (227)
T 3e8s_A          122 ANFALLH-----QDIIELLSAMRTLLVPGGALVIQTLHP  155 (227)
T ss_dssp             EESCCCS-----SCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             ECchhhh-----hhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence            9998882     235678999999999999999998876

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.56  E-value=1.7e-14  Score=135.18  Aligned_cols=106  Identities=24%  Similarity=0.340  Sum_probs=90.4

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||||||+|..+..++.. + ..+|+|+|+|+.+++.|+++......  ++.|+++|+...++       +++||
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~fD   91 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL-------NDKYD   91 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC-------SSCEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc-------CCCee
Confidence            46789999999999888777665 2 46999999999999999999876533  79999999987554       36899


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +|+|..++|+ +.   +...+++++.++|||||++++..|+
T Consensus        92 ~v~~~~~l~~-~~---~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           92 IAICHAFLLH-MT---TPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EEEEESCGGG-CS---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECChhhc-CC---CHHHHHHHHHHHcCCCCEEEEEecc
Confidence            9999999998 43   3468999999999999999999988

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.55  E-value=3.9e-14  Score=132.19  Aligned_cols=109  Identities=17%  Similarity=0.092  Sum_probs=82.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||||||+|..+..++..+ .+|+|+|+|+.|++.|+++....  .....+...+......      ..++||+
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~g-~~V~gvD~S~~ml~~Ar~~~~~~--~v~~~~~~~~~~~~~~------~~~~fD~  113 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALERG-ASVTVFDFSQRMCDDLAEALADR--CVTIDLLDITAEIPKE------LAGHFDF  113 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTSSS--CCEEEECCTTSCCCGG------GTTCCSE
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhc--cceeeeeecccccccc------cCCCccE
Confidence            4578899999999998888777665 59999999999999999987654  1122232222200011      2478999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |+|..++|+ + ..++.+.+++++.++| |||+++++.+..
T Consensus       114 Vv~~~~l~~-~-~~~~~~~~l~~l~~lL-PGG~l~lS~~~g  151 (261)
T 3iv6_A          114 VLNDRLINR-F-TTEEARRACLGMLSLV-GSGTVRASVKLG  151 (261)
T ss_dssp             EEEESCGGG-S-CHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred             EEEhhhhHh-C-CHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence            999999998 5 4667889999999999 999999886543

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.55  E-value=2.3e-14  Score=127.27  Aligned_cols=106  Identities=14%  Similarity=0.077  Sum_probs=88.2

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      .+..++.+|||+|||+|..+..+++.+..+|+|+|+|+.+++.|+++.+..+.. ++++.++|+...        ..++|
T Consensus        56 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~--------~~~~f  126 (205)
T 3grz_A           56 RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY-DIALQKTSLLAD--------VDGKF  126 (205)
T ss_dssp             HHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-CCEEEESSTTTT--------CCSCE
T ss_pred             HhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEecccccc--------CCCCc
Confidence            445678999999999998888877766779999999999999999998766443 389999998652        24789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|++...+|+       ...+++++.++|+|||++++..+.
T Consensus       127 D~i~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~  161 (205)
T 3grz_A          127 DLIVANILAEI-------LLDLIPQLDSHLNEDGQVIFSGID  161 (205)
T ss_dssp             EEEEEESCHHH-------HHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred             eEEEECCcHHH-------HHHHHHHHHHhcCCCCEEEEEecC
Confidence            99999887665       468899999999999999987433

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.55  E-value=4.5e-14  Score=130.66  Aligned_cols=125  Identities=19%  Similarity=0.159  Sum_probs=94.3

Q ss_pred             HHHHHHHcCC---CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352           21 KTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (357)
Q Consensus        21 ks~Li~~~~~---~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~   97 (357)
                      .+.++..++.   ++.+|||+|||+|..+..++.....+|+|+|+++.+++.|+++.+.++...++.++++|+.....  
T Consensus        36 d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~--  113 (259)
T 3lpm_A           36 DAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD--  113 (259)
T ss_dssp             HHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGG--
T ss_pred             HHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhh--
Confidence            3566666654   67899999999998888877766569999999999999999999877665579999999866331  


Q ss_pred             hhhhcCCcccEEEEccchhhc----------------cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           98 QMQEKANQADLVCCFQHLQMC----------------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        98 ~l~~~~~~FDlV~~~~~lh~~----------------fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .+  ..++||+|+|+..++..                ++.......+++.+.++|||||+|++..+..
T Consensus       114 ~~--~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  179 (259)
T 3lpm_A          114 LI--PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE  179 (259)
T ss_dssp             TS--CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             hh--ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH
Confidence            11  25789999997543321                1112446789999999999999999986543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.55  E-value=1.4e-14  Score=141.95  Aligned_cols=110  Identities=20%  Similarity=0.176  Sum_probs=90.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhc-----C--CCceeEEEEcCCCCC------c
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-----R--KNFIAEFFEADPCAE------N   94 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~-----~--~~~~v~f~~~D~~~~------~   94 (357)
                      .++.+|||||||+|..+..++..  +..+|+|+|+|+.+++.|+++.+..     +  ...++.|+++|+...      +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            46789999999999888888775  4569999999999999999987543     1  113799999999875      3


Q ss_pred             hhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        95 ~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +      ++++||+|++..++|+ +.   +...+++++.++|||||+|++..+..
T Consensus       162 ~------~~~~fD~V~~~~~l~~-~~---d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          162 V------PDSSVDIVISNCVCNL-ST---NKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             C------CTTCEEEEEEESCGGG-CS---CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             C------CCCCEEEEEEccchhc-CC---CHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            3      4689999999999998 43   35789999999999999999885443

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.54  E-value=2e-14  Score=135.23  Aligned_cols=114  Identities=15%  Similarity=0.130  Sum_probs=78.4

Q ss_pred             CCCEEEEECCCCChhHH----HHHHh-cCCe--EEEEeCChHHHHHHHHHhHhcCCCceeEE--EEcCCCCCchhhhh--
Q 018352           31 PYVTVCDLYCGAGVDVD----KWETA-LIAN--YIGIDVATSGIGEARDTWENQRKNFIAEF--FEADPCAENFETQM--   99 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~----k~~~~-~~~~--v~GiDiS~~~l~~A~~r~~~~~~~~~v~f--~~~D~~~~~~~~~l--   99 (357)
                      ++.+|||||||+|..+.    .+... +...  ++|+|+|++|++.|+++........++.|  ..+++.  ++...+  
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSS--EYQSRMLE  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHH--HHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchh--hhhhhhcc
Confidence            56799999999996443    22222 2343  49999999999999999864311123444  444432  221100  


Q ss_pred             hhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      ...+++||+|+|.+++|| +.+   ..++|++++++|||||+|++..++.+
T Consensus       130 ~~~~~~fD~V~~~~~l~~-~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~  176 (292)
T 2aot_A          130 KKELQKWDFIHMIQMLYY-VKD---IPATLKFFHSLLGTNAKMLIIVVSGS  176 (292)
T ss_dssp             TTCCCCEEEEEEESCGGG-CSC---HHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             ccCCCceeEEEEeeeeee-cCC---HHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            013578999999999999 543   56789999999999999998865543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.54  E-value=2.3e-13  Score=120.84  Aligned_cols=115  Identities=11%  Similarity=0.002  Sum_probs=91.4

Q ss_pred             HHHHHHc-CCCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh
Q 018352           22 TALIKIY-SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (357)
Q Consensus        22 s~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l   99 (357)
                      ..++... ..++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++.+..+. .+++++++|+.....    
T Consensus        30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~----  104 (204)
T 3e05_A           30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLD----  104 (204)
T ss_dssp             HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCT----
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhh----
Confidence            3344443 3478899999999999888887774 57999999999999999999876544 368999999865322    


Q ss_pred             hhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                        ...+||+|++..+++       ....+++++.++|||||++++..+..+
T Consensus       105 --~~~~~D~i~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~  146 (204)
T 3e05_A          105 --DLPDPDRVFIGGSGG-------MLEEIIDAVDRRLKSEGVIVLNAVTLD  146 (204)
T ss_dssp             --TSCCCSEEEESCCTT-------CHHHHHHHHHHHCCTTCEEEEEECBHH
T ss_pred             --cCCCCCEEEECCCCc-------CHHHHHHHHHHhcCCCeEEEEEecccc
Confidence              236799999988654       366889999999999999999977653

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.54  E-value=2e-14  Score=139.35  Aligned_cols=106  Identities=15%  Similarity=0.113  Sum_probs=88.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..+++.+..+|+|+|+| +|++.|+++.+.++...+++|+++|+...++      +.++||+|
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~I  137 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVEL------PVEKVDII  137 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCC------SSSCEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccC------CCCceEEE
Confidence            3678999999999998888888877799999999 5999999999877665569999999988765      46899999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                      +|....++ +........+++.+.++|||||+++
T Consensus       138 is~~~~~~-l~~~~~~~~~l~~~~r~LkpgG~li  170 (349)
T 3q7e_A          138 ISEWMGYC-LFYESMLNTVLHARDKWLAPDGLIF  170 (349)
T ss_dssp             EECCCBBT-BTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEcccccc-ccCchhHHHHHHHHHHhCCCCCEEc
Confidence            99765443 3345567789999999999999986

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.53  E-value=3.1e-14  Score=123.43  Aligned_cols=111  Identities=12%  Similarity=0.039  Sum_probs=86.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++.+..+...+++++++|+...     +....++||+|
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~fD~i  104 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA-----IDCLTGRFDLV  104 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH-----HHHBCSCEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh-----HHhhcCCCCEE
Confidence            4678999999999998888877766799999999999999999987765444689999987541     11134679999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHH--hcccCCcEEEEEeCCch
Q 018352          110 CCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDSS  150 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~--~~LkpGG~fi~t~pd~~  150 (357)
                      ++...++.     .....+++.+.  ++|+|||++++.++...
T Consensus       105 ~~~~~~~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A          105 FLDPPYAK-----ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             EECCSSHH-----HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             EECCCCCc-----chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            99876543     23455666666  99999999999876653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.53  E-value=1.6e-13  Score=122.75  Aligned_cols=108  Identities=13%  Similarity=0.031  Sum_probs=87.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|+++.+..+...+++++++|+.....      ....||+
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~------~~~~~D~  125 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA------DLPLPEA  125 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT------TSCCCSE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc------cCCCCCE
Confidence            357889999999999888888777 669999999999999999998776554469999999865211      2357999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      |++..++        ... +++++.++|||||++++.+++.+.+
T Consensus       126 v~~~~~~--------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~  160 (204)
T 3njr_A          126 VFIGGGG--------SQA-LYDRLWEWLAPGTRIVANAVTLESE  160 (204)
T ss_dssp             EEECSCC--------CHH-HHHHHHHHSCTTCEEEEEECSHHHH
T ss_pred             EEECCcc--------cHH-HHHHHHHhcCCCcEEEEEecCcccH
Confidence            9987633        134 8999999999999999998876544

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.53  E-value=2.5e-14  Score=131.08  Aligned_cols=109  Identities=23%  Similarity=0.266  Sum_probs=89.2

Q ss_pred             HHHHc-CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh
Q 018352           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (357)
Q Consensus        24 Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~  101 (357)
                      ++..+ ..++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++..      ++.|+++|+...+       
T Consensus        25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~------~~~~~~~d~~~~~-------   91 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP------NTNFGKADLATWK-------   91 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHST------TSEEEECCTTTCC-------
T ss_pred             HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCC------CcEEEECChhhcC-------
Confidence            44443 246789999999999888877766 35699999999999999988831      5789999987643       


Q ss_pred             cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .+++||+|+|..++|+ +.   +...+++++.++|||||++++++++.
T Consensus        92 ~~~~fD~v~~~~~l~~-~~---~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A           92 PAQKADLLYANAVFQW-VP---DHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             CSSCEEEEEEESCGGG-ST---THHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             ccCCcCEEEEeCchhh-CC---CHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            2478999999999999 43   46789999999999999999998764

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.53  E-value=1e-13  Score=124.26  Aligned_cols=116  Identities=16%  Similarity=0.082  Sum_probs=89.2

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ..++.+|||||||+|..+..++.. +..+++|+|+|+.+++.|+++....+. .++.++++|+....  ..+  ..++||
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~~--~~~~~D  113 (214)
T 1yzh_A           39 GNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLT--DYF--EDGEID  113 (214)
T ss_dssp             TSCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGG--GTS--CTTCCS
T ss_pred             CCCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHH--hhc--CCCCCC
Confidence            345789999999999888888776 356999999999999999999876644 37999999997633  111  357899


Q ss_pred             EEEEccchhhccCCHH-----HHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          108 LVCCFQHLQMCFETEE-----RARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       108 lV~~~~~lh~~fes~~-----~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      +|++.+..++ .....     ....+++++.++|+|||++++.+.+..
T Consensus       114 ~i~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  160 (214)
T 1yzh_A          114 RLYLNFSDPW-PKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG  160 (214)
T ss_dssp             EEEEESCCCC-CSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred             EEEEECCCCc-cccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence            9999886544 11000     125789999999999999999887643

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=1.7e-14  Score=133.45  Aligned_cols=101  Identities=13%  Similarity=0.080  Sum_probs=84.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..++. ...+|+|+|+|+.|++.|+++.       ++.|+++|+...++      ++++||+|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~------~~~~fD~v   98 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLAL------PDKSVDGV   98 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCS------CTTCBSEE
T ss_pred             CCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCC------CCCCEeEE
Confidence            5788999999999988877766 4569999999999998776543       68999999987665      56899999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +|..++|+ +   .+...+++++.++|| ||++++..++.
T Consensus        99 ~~~~~l~~-~---~~~~~~l~~~~~~Lk-gG~~~~~~~~~  133 (261)
T 3ege_A           99 ISILAIHH-F---SHLEKSFQEMQRIIR-DGTIVLLTFDI  133 (261)
T ss_dssp             EEESCGGG-C---SSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred             EEcchHhh-c---cCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence            99999998 4   346788999999999 99888887664

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.53  E-value=6.6e-14  Score=121.78  Aligned_cols=114  Identities=17%  Similarity=0.063  Sum_probs=86.5

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++....+...+++++++|+....  ..+....++||+|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~fD~i  120 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRAL--EQFYEEKLQFDLV  120 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH--HHHHHTTCCEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHH--HHHHhcCCCCCEE
Confidence            36789999999999888877776667999999999999999999877654447899999975421  1111125789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHH--HhcccCCcEEEEEeCCch
Q 018352          110 CCFQHLQMCFETEERARRLLQNV--SSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i--~~~LkpGG~fi~t~pd~~  150 (357)
                      ++...++.  ...   ..+++.+  .++|+|||++++.++...
T Consensus       121 ~~~~~~~~--~~~---~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          121 LLDPPYAK--QEI---VSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             EECCCGGG--CCH---HHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             EECCCCCc--hhH---HHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            99877553  222   3445555  899999999999877753

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.53  E-value=6e-14  Score=135.54  Aligned_cols=107  Identities=15%  Similarity=0.098  Sum_probs=87.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||||||+|..+..+++.+..+|+|+|+|+ |++.|+++.+.++...+++++++|+...++      +.++||+
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~~D~  134 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL------PVEKVDV  134 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SCSCEEE
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC------CCCcEEE
Confidence            356789999999999888877777767999999996 999999998876655579999999987655      4578999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                      |++....+. +.+......+++++.++|||||+++
T Consensus       135 Ivs~~~~~~-l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          135 IISEWMGYF-LLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EEECCCBTT-BTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEcCchhh-ccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            998763222 3345567889999999999999997

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.53  E-value=2.5e-14  Score=129.70  Aligned_cols=118  Identities=15%  Similarity=0.169  Sum_probs=88.8

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ..++.+|||||||+|..+..++.. +...|+|+|+|+.|++.|+++.+..+.. ++.|+++|+... +...+  ++++||
T Consensus        32 ~~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~-l~~~~--~~~~~d  107 (218)
T 3dxy_A           32 GREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEV-LHKMI--PDNSLR  107 (218)
T ss_dssp             SSCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHH-HHHHS--CTTCEE
T ss_pred             CCCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHH-HHHHc--CCCChh
Confidence            346789999999999988888776 4568999999999999999998765433 699999997542 10001  468999


Q ss_pred             EEEEccchhhccCCHHHH-----HHHHHHHHhcccCCcEEEEEeCCchH
Q 018352          108 LVCCFQHLQMCFETEERA-----RRLLQNVSSLLKPGGYFLGITPDSST  151 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~-----~~~L~~i~~~LkpGG~fi~t~pd~~~  151 (357)
                      .|++.+...| .......     ..+++.++++|||||+|++.+.+...
T Consensus       108 ~v~~~~~~p~-~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~  155 (218)
T 3dxy_A          108 MVQLFFPDPW-HKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPY  155 (218)
T ss_dssp             EEEEESCCCC-CSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHH
T ss_pred             eEEEeCCCCc-cchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHH
Confidence            9999876554 2111111     25899999999999999999877643

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.52  E-value=1.3e-14  Score=143.27  Aligned_cols=117  Identities=15%  Similarity=0.238  Sum_probs=85.2

Q ss_pred             HHHHHc-CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh
Q 018352           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (357)
Q Consensus        23 ~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~  101 (357)
                      .++..+ ..++.+|||||||+|..+..+...+. +|+|+|+|+.|++.|+++..        ..... .........++.
T Consensus        98 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~--------~~~~~-~~~~~~~~~l~~  167 (416)
T 4e2x_A           98 DFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGI--------RVRTD-FFEKATADDVRR  167 (416)
T ss_dssp             HHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTC--------CEECS-CCSHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCC--------Cccee-eechhhHhhccc
Confidence            334443 24678999999999998888877655 99999999999999987611        11111 111111111222


Q ss_pred             cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHH
Q 018352          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~  153 (357)
                      .+++||+|+|..++|| +.   +...++++++++|||||++++.+|+...+.
T Consensus       168 ~~~~fD~I~~~~vl~h-~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~  215 (416)
T 4e2x_A          168 TEGPANVIYAANTLCH-IP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIV  215 (416)
T ss_dssp             HHCCEEEEEEESCGGG-CT---THHHHHHHHHHHEEEEEEEEEEEECHHHHH
T ss_pred             CCCCEEEEEECChHHh-cC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhh
Confidence            3589999999999999 43   578899999999999999999999976553

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.51  E-value=2.9e-14  Score=127.20  Aligned_cols=110  Identities=12%  Similarity=0.045  Sum_probs=85.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCc-ccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQ-ADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~~~~~-FDl  108 (357)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++.+..+.. .+++|+++|+.....  .+  ..++ ||+
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~--~~--~~~~~fD~  128 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK--QP--QNQPHFDV  128 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT--SC--CSSCCEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHH--hh--ccCCCCCE
Confidence            56899999999998888777777679999999999999999998776532 378999999754211  00  2467 999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHH--HhcccCCcEEEEEeCCc
Q 018352          109 VCCFQHLQMCFETEERARRLLQNV--SSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i--~~~LkpGG~fi~t~pd~  149 (357)
                      |++...+|.     .....+++.+  .++|+|||++++.+...
T Consensus       129 I~~~~~~~~-----~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          129 VFLDPPFHF-----NLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             EEECCCSSS-----CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             EEECCCCCC-----ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            999876442     2456678888  77899999999886654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.51  E-value=1.8e-14  Score=123.92  Aligned_cols=100  Identities=14%  Similarity=0.202  Sum_probs=83.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++.... +++|+|+|+.+++.|+++.      .++.+..+|   .++      .+++||+
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------~~v~~~~~d---~~~------~~~~~D~   78 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKF------DSVITLSDP---KEI------PDNSVDF   78 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHC------TTSEEESSG---GGS------CTTCEEE
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhC------CCcEEEeCC---CCC------CCCceEE
Confidence            35678999999999988888877664 9999999999999999882      167889888   333      4689999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|..++|+ +.   +...+++++.++|||||++++..++
T Consensus        79 v~~~~~l~~-~~---~~~~~l~~~~~~L~pgG~l~~~~~~  114 (170)
T 3i9f_A           79 ILFANSFHD-MD---DKQHVISEVKRILKDDGRVIIIDWR  114 (170)
T ss_dssp             EEEESCSTT-CS---CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEccchhc-cc---CHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            999999998 43   4568999999999999999998554

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.51  E-value=5.1e-14  Score=137.81  Aligned_cols=107  Identities=16%  Similarity=0.099  Sum_probs=89.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..+++.+..+|+|+|+| .|++.|+++.+.++...+++++++|+....+      + ++||+|
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~-~~~D~I  133 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL------P-EKVDVI  133 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC------S-SCEEEE
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc------C-CcceEE
Confidence            4788999999999988888888777799999999 9999999999877665569999999977554      3 789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|....|+ +..+.....+++.+.++|||||+++..
T Consensus       134 v~~~~~~~-l~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          134 ISEWMGYF-LLRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             EECCCBTT-BTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             EEcChhhc-ccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            99664454 445556788999999999999999754

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.51  E-value=1.2e-13  Score=124.41  Aligned_cols=106  Identities=11%  Similarity=-0.018  Sum_probs=79.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      +.++.+|||+|||+|..+..++.. +.++|+|+|+|+.|++.+.++.+..   .++.++.+|+.......  . ..++||
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~--~-~~~~fD  128 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYS--G-IVEKVD  128 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTT--T-TCCCEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhc--c-ccccee
Confidence            357889999999999887777665 3468999999999988777665543   26888889986631100  0 137899


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +|+|...      ...+...++++++++|||||+|++.+
T Consensus       129 ~V~~~~~------~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          129 LIYQDIA------QKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEEECCC------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecc------ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            9998742      12345667999999999999999885

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.50  E-value=1.5e-13  Score=122.25  Aligned_cols=102  Identities=12%  Similarity=0.040  Sum_probs=85.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|+++.+..+.. +++++.+|+.....      ..++||+
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~~D~  146 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQ------ARAPFDA  146 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG------GGCCEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCc------cCCCccE
Confidence            357889999999999888887777 569999999999999999998765443 68999999876443      3478999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |++..++|+..          .++.++|||||++++.+++
T Consensus       147 i~~~~~~~~~~----------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          147 IIVTAAPPEIP----------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EEESSBCSSCC----------THHHHTEEEEEEEEEEECS
T ss_pred             EEEccchhhhh----------HHHHHhcccCcEEEEEEcC
Confidence            99999998833          2578999999999999877

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.50  E-value=1.1e-13  Score=124.73  Aligned_cols=116  Identities=14%  Similarity=0.107  Sum_probs=88.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ..++.+|||||||+|..+..++.. +..+|+|+|+|+.+++.|+++....+. .++.|+++|+..  +...+  .+++||
T Consensus        36 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~--l~~~~--~~~~~d  110 (213)
T 2fca_A           36 GNDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADT--LTDVF--EPGEVK  110 (213)
T ss_dssp             TSCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGG--HHHHC--CTTSCC
T ss_pred             CCCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHH--HHhhc--CcCCcC
Confidence            346789999999999988888776 456999999999999999999876543 369999999865  21111  357899


Q ss_pred             EEEEccchhhccCCHH-----HHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          108 LVCCFQHLQMCFETEE-----RARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       108 lV~~~~~lh~~fes~~-----~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      .|++.+...+ .....     ....+++++.++|||||.|++.+.+..
T Consensus       111 ~v~~~~~~p~-~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~  157 (213)
T 2fca_A          111 RVYLNFSDPW-PKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG  157 (213)
T ss_dssp             EEEEESCCCC-CSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH
T ss_pred             EEEEECCCCC-cCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence            9998775544 11100     035789999999999999999987753

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.50  E-value=1.2e-13  Score=129.82  Aligned_cols=117  Identities=16%  Similarity=0.176  Sum_probs=85.4

Q ss_pred             HHHHHHHHcCCCCCEEEEECCCCChhH----HHHHHh-c----CCeEEEEeCChHHHHHHHHHhHh--------------
Q 018352           20 AKTALIKIYSHPYVTVCDLYCGAGVDV----DKWETA-L----IANYIGIDVATSGIGEARDTWEN--------------   76 (357)
Q Consensus        20 vks~Li~~~~~~~~~VLDlGCG~G~~l----~k~~~~-~----~~~v~GiDiS~~~l~~A~~r~~~--------------   76 (357)
                      .+..++..  .+..+|||+|||+|...    ..+... +    ..+|+|+|+|+.||+.|++..-.              
T Consensus        96 l~~~llp~--~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~  173 (274)
T 1af7_A           96 LAEHARRR--HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQR  173 (274)
T ss_dssp             HHHHHHHS--CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHH
T ss_pred             HHHHccCC--CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHH
Confidence            34444443  24579999999999732    233333 2    23899999999999999986310              


Q ss_pred             -----c---C--C------CceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCc
Q 018352           77 -----Q---R--K------NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG  140 (357)
Q Consensus        77 -----~---~--~------~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG  140 (357)
                           .   .  .      ..++.|.++|+...++.     ..++||+|+|.++++| | +.+..++++++++++|+|||
T Consensus       174 ~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~-----~~~~fDlI~crnvliy-f-~~~~~~~vl~~~~~~L~pgG  246 (274)
T 1af7_A          174 YFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYN-----VPGPFDAIFCRNVMIY-F-DKTTQEDILRRFVPLLKPDG  246 (274)
T ss_dssp             HEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCC-----CCCCEEEEEECSSGGG-S-CHHHHHHHHHHHGGGEEEEE
T ss_pred             HhhccccCCCCceeechhhcccCeEEecccCCCCCC-----cCCCeeEEEECCchHh-C-CHHHHHHHHHHHHHHhCCCc
Confidence                 0   0  0      02589999999875441     1468999999999999 7 45667899999999999999


Q ss_pred             EEEEE
Q 018352          141 YFLGI  145 (357)
Q Consensus       141 ~fi~t  145 (357)
                      +|++.
T Consensus       247 ~L~lg  251 (274)
T 1af7_A          247 LLFAG  251 (274)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99864

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.50  E-value=9.2e-14  Score=127.46  Aligned_cols=119  Identities=13%  Similarity=0.118  Sum_probs=84.1

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc-----CCCceeEEEEcCCCCCchhhhhhh
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-----RKNFIAEFFEADPCAENFETQMQE  101 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~-----~~~~~v~f~~~D~~~~~~~~~l~~  101 (357)
                      +..++.+|||||||+|..+..++.. +...|+|+|+|+.|++.|+++++..     ....++.|+++|+... +...+  
T Consensus        43 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~-l~~~~--  119 (235)
T 3ckk_A           43 RAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH-LPNFF--  119 (235)
T ss_dssp             ---CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC-HHHHC--
T ss_pred             ccCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh-hhhhC--
Confidence            3446779999999999988887765 4568999999999999999876531     1123799999998651 11111  


Q ss_pred             cCCcccEEEEccchhhccCCHH-HH----HHHHHHHHhcccCCcEEEEEeCCch
Q 018352          102 KANQADLVCCFQHLQMCFETEE-RA----RRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes~~-~~----~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      ..++||.|++.+...+ +.... +.    ..++++++++|||||.|++.+.+..
T Consensus       120 ~~~~~D~v~~~~~dp~-~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~  172 (235)
T 3ckk_A          120 YKGQLTKMFFLFPDPH-FKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLE  172 (235)
T ss_dssp             CTTCEEEEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred             CCcCeeEEEEeCCCch-hhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHH
Confidence            3578999998775544 21111 11    3699999999999999999988754

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.50  E-value=4.2e-13  Score=141.08  Aligned_cols=111  Identities=20%  Similarity=0.351  Sum_probs=92.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcC-----CCceeEEEEcCCCCCchhhhhhhcC
Q 018352           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQR-----KNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~-----~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      ++.+|||||||+|..+..++...  ..+|+|+|+|+.|++.|++++....     ...+++|+++|+...++      ..
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~------~d  794 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDS------RL  794 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCT------TS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCc------cc
Confidence            67899999999998887776654  2699999999999999999765321     12379999999988666      46


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      ++||+|+|..++|| + .......+++++.++|||| .+++++|+.+
T Consensus       795 ~sFDlVV~~eVLeH-L-~dp~l~~~L~eI~RvLKPG-~LIISTPN~e  838 (950)
T 3htx_A          795 HDVDIGTCLEVIEH-M-EEDQACEFGEKVLSLFHPK-LLIVSTPNYE  838 (950)
T ss_dssp             CSCCEEEEESCGGG-S-CHHHHHHHHHHHHHTTCCS-EEEEEECBGG
T ss_pred             CCeeEEEEeCchhh-C-ChHHHHHHHHHHHHHcCCC-EEEEEecCch
Confidence            89999999999999 5 4455678999999999999 9999999974

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.50  E-value=2.4e-13  Score=117.99  Aligned_cols=110  Identities=16%  Similarity=0.135  Sum_probs=88.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++... .+|+|+|+|+.+++.|++++...+...++.+.++|+.. .+    . ..++||+
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~----~-~~~~~D~  103 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-AL----C-KIPDIDI  103 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HH----T-TSCCEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hc----c-cCCCCCE
Confidence            4578899999999998887776666 79999999999999999988766543478899998644 22    1 1258999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      |++...+++       ...+++++.++|+|||++++..++....
T Consensus       104 v~~~~~~~~-------~~~~l~~~~~~l~~gG~l~~~~~~~~~~  140 (192)
T 1l3i_A          104 AVVGGSGGE-------LQEILRIIKDKLKPGGRIIVTAILLETK  140 (192)
T ss_dssp             EEESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECBHHHH
T ss_pred             EEECCchHH-------HHHHHHHHHHhcCCCcEEEEEecCcchH
Confidence            999886654       4678999999999999999998876543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.49  E-value=3.4e-13  Score=126.46  Aligned_cols=112  Identities=13%  Similarity=0.150  Sum_probs=86.3

Q ss_pred             CCCEEEEECCCC---ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh-------hhh
Q 018352           31 PYVTVCDLYCGA---GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-------TQM   99 (357)
Q Consensus        31 ~~~~VLDlGCG~---G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-------~~l   99 (357)
                      ...+|||||||+   |..+..+... +..+|+|+|+|+.||+.|+++....   .+++|+++|+......       ..+
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~~~~  153 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTADVRDPEYILNHPDVRRMI  153 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEeeCCCchhhhccchhhccC
Confidence            347999999999   9655444333 4569999999999999999988532   2689999999763211       111


Q ss_pred             hhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                        ...+||+|++..++|| +... +...++++++++|+|||+|+++....
T Consensus       154 --d~~~~d~v~~~~vlh~-~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          154 --DFSRPAAIMLVGMLHY-LSPD-VVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             --CTTSCCEEEETTTGGG-SCTT-THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             --CCCCCEEEEEechhhh-CCcH-HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence              2258999999999999 5443 57889999999999999999885543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.49  E-value=1.2e-13  Score=132.72  Aligned_cols=106  Identities=17%  Similarity=0.111  Sum_probs=86.9

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..+++.+..+|+|+|+| .|++.|+++.+.++...+++++++|+...++      +.++||+|
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~~D~I  109 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL------PFPKVDII  109 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SSSCEEEE
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC------CCCcccEE
Confidence            4678999999999988877777777799999999 6999999998877655579999999987655      45789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                      +|....+. +.++.....++.++.++|||||+++
T Consensus       110 vs~~~~~~-l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          110 ISEWMGYF-LLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EECCCBTT-BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEeCchhh-cccHHHHHHHHHHHHhhcCCCeEEE
Confidence            99754443 3344556788999999999999997

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.49  E-value=9.3e-14  Score=118.93  Aligned_cols=111  Identities=10%  Similarity=0.063  Sum_probs=82.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .+++.+|||+|||+|..+..++..+. .++|+|+|+.+++.|+++.+..+.  +++++++|+...  ........++||+
T Consensus        39 ~~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~--~~~~~~~~~~~D~  113 (171)
T 1ws6_A           39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVF--LPEAKAQGERFTV  113 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHH--HHHHHHTTCCEEE
T ss_pred             ccCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHH--HHhhhccCCceEE
Confidence            34678999999999988888877655 599999999999999999877644  788999987541  1111112358999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHH--HhcccCCcEEEEEeCCch
Q 018352          109 VCCFQHLQMCFETEERARRLLQNV--SSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i--~~~LkpGG~fi~t~pd~~  150 (357)
                      |++...+|.   ..+   .+++.+  .++|+|||++++.++...
T Consensus       114 i~~~~~~~~---~~~---~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          114 AFMAPPYAM---DLA---ALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             EEECCCTTS---CTT---HHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             EEECCCCch---hHH---HHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            999876651   222   334444  499999999999877654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.48  E-value=2.8e-13  Score=124.26  Aligned_cols=106  Identities=13%  Similarity=0.061  Sum_probs=85.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ++|+.+|||+|||+|.++..+++.  +.++|+|+|+|+.|++.++++.+..   .++..+.+|+......   .....++
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~---~~~~~~v  148 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKY---RHLVEGV  148 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGG---TTTCCCE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCcccc---ccccceE
Confidence            568999999999999999888875  5679999999999999999887654   2688899998764321   1235789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|++....|      ++...++.++.+.|||||++++..
T Consensus       149 DvVf~d~~~~------~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          149 DGLYADVAQP------EQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             EEEEECCCCT------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEeccCC------hhHHHHHHHHHHhccCCCEEEEEE
Confidence            9998765433      357789999999999999999864

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.48  E-value=4.4e-13  Score=127.84  Aligned_cols=109  Identities=18%  Similarity=0.121  Sum_probs=91.4

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|..+..++.. +..+++|+|+| .+++.|+++....+...+++|+.+|+...++      + ..||+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~-~~~D~  235 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY------G-NDYDL  235 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC------C-SCEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC------C-CCCcE
Confidence            56789999999999888888776 35699999999 9999999998765544479999999987544      2 34999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|..++|+ + +.++..+++++++++|+|||++++..+.
T Consensus       236 v~~~~~l~~-~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~  273 (335)
T 2r3s_A          236 VLLPNFLHH-F-DVATCEQLLRKIKTALAVEGKVIVFDFI  273 (335)
T ss_dssp             EEEESCGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEEcchhcc-C-CHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence            999999998 5 5667789999999999999999887544

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.48  E-value=2.6e-13  Score=125.54  Aligned_cols=102  Identities=21%  Similarity=0.333  Sum_probs=84.5

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++..      ++.|..+|+...++      .+++||+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~------~~~~fD~  151 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP------QVTFCVASSHRLPF------SDTSMDA  151 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTSCSB------CTTCEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC------CcEEEEcchhhCCC------CCCceeE
Confidence            57889999999999888888776 35699999999999999988752      56889999877665      4578999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~  154 (357)
                      |++.++.+           +++++.++|||||++++.+|+...++.
T Consensus       152 v~~~~~~~-----------~l~~~~~~L~pgG~l~~~~~~~~~~~~  186 (269)
T 1p91_A          152 IIRIYAPC-----------KAEELARVVKPGGWVITATPGPRHLME  186 (269)
T ss_dssp             EEEESCCC-----------CHHHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             EEEeCChh-----------hHHHHHHhcCCCcEEEEEEcCHHHHHH
Confidence            99876432           378999999999999999998766543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.47  E-value=6.1e-13  Score=125.94  Aligned_cols=105  Identities=10%  Similarity=-0.043  Sum_probs=84.1

Q ss_pred             CCCCCEEEEECCCCChhHHHH-HHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKW-ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~-~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      +.++.+|||||||+|+.+..+ ++....+|+|+|+|++|++.|+++.+..+. .+++|+++|+..  +      ++++||
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~--l------~d~~FD  190 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETV--I------DGLEFD  190 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGG--G------GGCCCS
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhh--C------CCCCcC
Confidence            458899999999999765443 343567999999999999999999887655 589999999865  3      247899


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +|++...    .   .+..++++++.++|||||++++...+.
T Consensus       191 vV~~~a~----~---~d~~~~l~el~r~LkPGG~Lvv~~~~~  225 (298)
T 3fpf_A          191 VLMVAAL----A---EPKRRVFRNIHRYVDTETRIIYRTYTG  225 (298)
T ss_dssp             EEEECTT----C---SCHHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred             EEEECCC----c---cCHHHHHHHHHHHcCCCcEEEEEcCcc
Confidence            9987652    1   346688999999999999999886543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.47  E-value=4.1e-13  Score=130.49  Aligned_cols=107  Identities=15%  Similarity=0.067  Sum_probs=90.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc--hhhhhhhcCCcc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--FETQMQEKANQA  106 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~--~~~~l~~~~~~F  106 (357)
                      ....+|||||||+|..+..+++. +..+++++|+ +.+++.|+++.+..+...+++|+.+|+....  +      + ++|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------p-~~~  249 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF------P-TGF  249 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC------C-CCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC------C-CCc
Confidence            35689999999999988888775 4569999999 9999999999876554457999999998753  4      2 689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|++..++|+ + +.++..++|++++++|||||++++..
T Consensus       250 D~v~~~~vlh~-~-~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          250 DAVWMSQFLDC-F-SEEEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             SEEEEESCSTT-S-CHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CEEEEechhhh-C-CHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            99999999998 5 56678899999999999999998874

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.47  E-value=4e-13  Score=128.56  Aligned_cols=106  Identities=16%  Similarity=0.065  Sum_probs=89.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      +..+|||+|||+|..+..+++. +..+++++|+ +.+++.|+++....+...+++|..+|+. .++      + .+||+|
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~------p-~~~D~v  239 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPL------P-AGAGGY  239 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCC------C-CSCSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCC------C-CCCcEE
Confidence            4579999999999888888775 4568999999 9999999999877655457999999997 343      2 389999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +|..++|+ + +.++..++|++++++|+|||++++..+
T Consensus       240 ~~~~vlh~-~-~~~~~~~~l~~~~~~L~pgG~l~i~e~  275 (332)
T 3i53_A          240 VLSAVLHD-W-DDLSAVAILRRCAEAAGSGGVVLVIEA  275 (332)
T ss_dssp             EEESCGGG-S-CHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             EEehhhcc-C-CHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence            99999998 6 456678999999999999999998744

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.47  E-value=6.9e-13  Score=114.36  Aligned_cols=106  Identities=8%  Similarity=-0.017  Sum_probs=86.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++. +..+++|+|+|+.+++.|+++.+..+. .+++++++|+.. .+      +.++||+
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~-~~------~~~~~D~  103 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED-VL------DKLEFNK  103 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH-HG------GGCCCSE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc-cc------cCCCCcE
Confidence            34678999999999988877766 667999999999999999999876543 368999999765 33      3368999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHH
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~  153 (357)
                      |+|...        .....+++++.++  |||++++..++.+.+.
T Consensus       104 i~~~~~--------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~  138 (183)
T 2yxd_A          104 AFIGGT--------KNIEKIIEILDKK--KINHIVANTIVLENAA  138 (183)
T ss_dssp             EEECSC--------SCHHHHHHHHHHT--TCCEEEEEESCHHHHH
T ss_pred             EEECCc--------ccHHHHHHHHhhC--CCCEEEEEecccccHH
Confidence            999886        2356788888888  9999999998876543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.46  E-value=6.5e-14  Score=124.29  Aligned_cols=106  Identities=10%  Similarity=0.095  Sum_probs=84.1

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      .++++..+|||||||+|..+..|... +..+|+|+|+|+.|++.|+++....+...++.|  +|.... .      ..++
T Consensus        45 ~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-~------~~~~  115 (200)
T 3fzg_A           45 GNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-V------YKGT  115 (200)
T ss_dssp             HHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-H------TTSE
T ss_pred             hhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-C------CCCC
Confidence            34577889999999999888887665 445999999999999999999987665445655  554321 1      4688


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ||+|+....+|+ +   ++.+..+..+.+.|+|||+||--
T Consensus       116 ~DvVLa~k~LHl-L---~~~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A          116 YDVVFLLKMLPV-L---KQQDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             EEEEEEETCHHH-H---HHTTCCHHHHHHTCEEEEEEEEE
T ss_pred             cChhhHhhHHHh-h---hhhHHHHHHHHHHhCCCCEEEEe
Confidence            999999999999 3   45666777999999999988754

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.46  E-value=1.1e-12  Score=128.60  Aligned_cols=111  Identities=15%  Similarity=0.128  Sum_probs=92.3

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++.+.++.  +++|+++|+.....      ..++||+|+
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g-~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~~~~------~~~~fD~Ii  303 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDEALT------EEARFDIIV  303 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTT-CEEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTSC------TTCCEEEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhhccc------cCCCeEEEE
Confidence            67899999999999988887775 4999999999999999999887643  48999999977544      347899999


Q ss_pred             Eccchhhcc-CCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          111 CFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       111 ~~~~lh~~f-es~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      |+..+|+.- ...+...++++++.++|||||++++.+....
T Consensus       304 ~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l  344 (381)
T 3dmg_A          304 TNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL  344 (381)
T ss_dssp             ECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS
T ss_pred             ECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC
Confidence            998888621 1246788999999999999999999876553

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.46  E-value=5.5e-13  Score=120.37  Aligned_cols=101  Identities=12%  Similarity=0.052  Sum_probs=83.3

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++... .+|+|+|+|+.+++.|+++....+   ++.++++|+.....      ..++||+
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~------~~~~fD~  137 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYE------EEKPYDR  137 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCG------GGCCEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccc------cCCCccE
Confidence            3577899999999998888877766 699999999999999999987653   68999999865221      2478999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |++..++|+..          .++.++|+|||++++.+++.
T Consensus       138 v~~~~~~~~~~----------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          138 VVVWATAPTLL----------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             EEESSBBSSCC----------HHHHHTEEEEEEEEEEECSS
T ss_pred             EEECCcHHHHH----------HHHHHHcCCCcEEEEEEcCC
Confidence            99999988832          35888999999999997764

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.45  E-value=1.8e-12  Score=126.13  Aligned_cols=111  Identities=19%  Similarity=0.169  Sum_probs=91.7

Q ss_pred             HHHHc-CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh
Q 018352           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (357)
Q Consensus        24 Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~  101 (357)
                      ++..+ ..+..+|||+|||+|..+..+++. +..+++++|+ +.+++.|+++....+...+++|..+|+. .++      
T Consensus       194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~------  265 (369)
T 3gwz_A          194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETI------  265 (369)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCC------
T ss_pred             HHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCC------
Confidence            44443 235789999999999988888776 4568999999 9999999999876655557999999997 343      


Q ss_pred             cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      + ..||+|+|..++|+ + +.++..++|++++++|+|||++++.
T Consensus       266 p-~~~D~v~~~~vlh~-~-~d~~~~~~L~~~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          266 P-DGADVYLIKHVLHD-W-DDDDVVRILRRIATAMKPDSRLLVI  306 (369)
T ss_dssp             C-SSCSEEEEESCGGG-S-CHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             C-CCceEEEhhhhhcc-C-CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            2 37999999999999 6 5666778999999999999999987

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.45  E-value=1.4e-13  Score=122.81  Aligned_cols=108  Identities=8%  Similarity=0.000  Sum_probs=83.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++.+..+. .+++|+++|+...     +....++||+|+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~-----~~~~~~~fD~V~  127 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSF-----LAQKGTPHNIVF  127 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHH-----HSSCCCCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHH-----HhhcCCCCCEEE
Confidence            5689999999999888877777767999999999999999999877643 3789999987541     111346899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHh--cccCCcEEEEEeCCc
Q 018352          111 CFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPDS  149 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~--~LkpGG~fi~t~pd~  149 (357)
                      +...+|.     .....+++.+.+  +|+|||++++.+...
T Consensus       128 ~~~p~~~-----~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          128 VDPPFRR-----GLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             ECCSSST-----TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             ECCCCCC-----CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            9876543     224456677754  699999999886554

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.45  E-value=3.2e-13  Score=126.65  Aligned_cols=110  Identities=15%  Similarity=0.032  Sum_probs=89.6

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      .+..++.++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++.+.++...+++|+++|+.....       .
T Consensus       118 ~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-------~  190 (278)
T 2frn_A          118 RMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------E  190 (278)
T ss_dssp             HHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------C
T ss_pred             HHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-------c
Confidence            344556788999999999999999888876658999999999999999998877655468999999977543       4


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ++||+|++....        ....++.++.++|||||++++.+..
T Consensus       191 ~~fD~Vi~~~p~--------~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          191 NIADRILMGYVV--------RTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             SCEEEEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCccEEEECCch--------hHHHHHHHHHHHCCCCeEEEEEEee
Confidence            789999986531        1256788999999999999987554

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.45  E-value=2.9e-13  Score=125.70  Aligned_cols=130  Identities=17%  Similarity=0.055  Sum_probs=94.7

Q ss_pred             HHHHHHHHcCC--CCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHh---cCCCceeEEEEcCCCCC
Q 018352           20 AKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWEN---QRKNFIAEFFEADPCAE   93 (357)
Q Consensus        20 vks~Li~~~~~--~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~---~~~~~~v~f~~~D~~~~   93 (357)
                      ..+.++..++.  ++.+|||+|||+|..+..++... ..+|+|+|+++.+++.|+++...   ++...+++++++|+...
T Consensus        23 ~D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~  102 (260)
T 2ozv_A           23 MDAMLLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR  102 (260)
T ss_dssp             CHHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC
T ss_pred             cHHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH
Confidence            56778887765  56799999999998887777663 46999999999999999999876   55444699999999775


Q ss_pred             chhhh-hhhcCCcccEEEEccchhhc--------------cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           94 NFETQ-MQEKANQADLVCCFQHLQMC--------------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        94 ~~~~~-l~~~~~~FDlV~~~~~lh~~--------------fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ..... -....++||+|+|+..++..              ++.......+++.+.++|||||+|++..+..
T Consensus       103 ~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  173 (260)
T 2ozv_A          103 AKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ  173 (260)
T ss_dssp             HHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             hhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence            21000 00035789999998433321              0111225678999999999999999987664

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.44  E-value=4.9e-13  Score=122.78  Aligned_cols=114  Identities=16%  Similarity=0.068  Sum_probs=83.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHhc---CCCce----------------------
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQ---RKNFI----------------------   82 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~~---~~~~~----------------------   82 (357)
                      ++.+|||+|||+|..+..++..   +..+|+|+|+|+.+++.|+++....   +...+                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            5679999999999888887765   3458999999999999999876533   11111                      


Q ss_pred             ---eE-------------EEEcCCCCCchhhhhhhcCCcccEEEEccchhhccC-----CHHHHHHHHHHHHhcccCCcE
Q 018352           83 ---AE-------------FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGY  141 (357)
Q Consensus        83 ---v~-------------f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fe-----s~~~~~~~L~~i~~~LkpGG~  141 (357)
                         +.             |.++|+.......... ...+||+|+|+..+++...     ..+....+++++.++|+|||+
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  209 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV  209 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             hhhhhhhccccccccccceeeccccccccccccc-CCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence               55             9999987622100000 1348999999887766221     146788999999999999999


Q ss_pred             EEEE
Q 018352          142 FLGI  145 (357)
Q Consensus       142 fi~t  145 (357)
                      ++++
T Consensus       210 l~~~  213 (250)
T 1o9g_A          210 IAVT  213 (250)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9984

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.44  E-value=5e-13  Score=121.32  Aligned_cols=104  Identities=16%  Similarity=0.072  Sum_probs=81.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++.+..   .++.++.+|+.....  .+. ..++||+
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~--~~~-~~~~~D~  146 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQE--YAN-IVEKVDV  146 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGG--GTT-TSCCEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCccc--ccc-cCccEEE
Confidence            46789999999999888888776 4479999999999999999887654   378999999876211  011 1268999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |++     . +........+++++.++|||||+++++
T Consensus       147 v~~-----~-~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          147 IYE-----D-VAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEE-----C-CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEE-----e-cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            983     2 234445678899999999999999987

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.44  E-value=5.9e-13  Score=130.96  Aligned_cols=108  Identities=16%  Similarity=0.082  Sum_probs=83.6

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhH-------hcCC-CceeEEEEcCCCCCchhhhh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWE-------NQRK-NFIAEFFEADPCAENFETQM   99 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~-------~~~~-~~~v~f~~~D~~~~~~~~~l   99 (357)
                      +.++.+|||||||+|..+..++.. +..+++|||+|+.+++.|++..+       ..+. ..+++|+++|+...++... 
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~-  249 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER-  249 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHH-
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccc-
Confidence            568899999999999888877754 55569999999999999987542       2222 2479999999988665321 


Q ss_pred             hhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                         ...||+|+++..+   | . .+..+.|+++.+.|||||+|+.+
T Consensus       250 ---~~~aDVVf~Nn~~---F-~-pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          250 ---IANTSVIFVNNFA---F-G-PEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             ---HHTCSEEEECCTT---C-C-HHHHHHHHHHHTTSCTTCEEEES
T ss_pred             ---cCCccEEEEcccc---c-C-chHHHHHHHHHHcCCCCcEEEEe
Confidence               1469999987644   3 2 45777889999999999999977

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.44  E-value=4.3e-13  Score=129.85  Aligned_cols=107  Identities=17%  Similarity=0.113  Sum_probs=86.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..+++.+..+|+|+|+|+ +++.|+++.+.++...+++++.+|+...++       .++||+|
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-------~~~~D~I  120 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-------PEQVDII  120 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC-------SSCEEEE
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC-------CCceeEE
Confidence            36789999999999888887777777999999996 899999988876655579999999987554       3689999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ++...+++..  .+.....+.++.++|||||+++...
T Consensus       121 vs~~~~~~~~--~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          121 ISEPMGYMLF--NERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             EECCCBTTBT--TTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             EEeCchhcCC--hHHHHHHHHHHHhhcCCCeEEEEec
Confidence            9987655522  2335567788999999999998553

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.44  E-value=1.2e-12  Score=126.88  Aligned_cols=107  Identities=19%  Similarity=0.144  Sum_probs=89.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||||||+|..+..++... ..+++++|+ +.+++.|+++....+...+++|+.+|+.. .+      + ..||+
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~------~-~~~D~  251 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL------P-VTADV  251 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC------S-CCEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cC------C-CCCCE
Confidence            467899999999998888887763 469999999 99999999998776554479999999875 33      2 34999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |+|..++|+ + +.+....++++++++|+|||++++..+
T Consensus       252 v~~~~vl~~-~-~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          252 VLLSFVLLN-W-SDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEESCGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEeccccC-C-CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            999999998 5 455567899999999999999998765

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.44  E-value=7.3e-13  Score=127.56  Aligned_cols=107  Identities=26%  Similarity=0.253  Sum_probs=89.8

Q ss_pred             CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      +.+|||||||+|..+..+++. +..+++++|+ +.+++.|+++........+++|+.+|+......     ..+.||+|+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~D~v~  253 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF-----EGGAADVVM  253 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG-----TTCCEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc-----CCCCccEEE
Confidence            789999999999988888776 4569999999 889999999887665555799999999775410     135699999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |..++|+ + +.++...++++++++|+|||++++..
T Consensus       254 ~~~vlh~-~-~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          254 LNDCLHY-F-DAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             EESCGGG-S-CHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Eeccccc-C-CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999998 5 56668899999999999999999873

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.43  E-value=4.7e-13  Score=123.85  Aligned_cols=104  Identities=21%  Similarity=0.154  Sum_probs=84.1

Q ss_pred             HHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      ..+..++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.|+++.+.++..  +.+.++|+... +      +.++
T Consensus       115 ~~~~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~------~~~~  184 (254)
T 2nxc_A          115 ARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-L------PFGP  184 (254)
T ss_dssp             HHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-G------GGCC
T ss_pred             HHhcCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-C------cCCC
Confidence            34467789999999999988887777666 9999999999999999998876443  78888886441 2      2468


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ||+|+++...|.       ...++.++.++|+|||+++++.
T Consensus       185 fD~Vv~n~~~~~-------~~~~l~~~~~~LkpgG~lils~  218 (254)
T 2nxc_A          185 FDLLVANLYAEL-------HAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             EEEEEEECCHHH-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEEEECCcHHH-------HHHHHHHHHHHcCCCCEEEEEe
Confidence            999998765443       5688999999999999999874

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.42  E-value=2.9e-12  Score=124.01  Aligned_cols=113  Identities=13%  Similarity=0.068  Sum_probs=92.1

Q ss_pred             HHHHHc-CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh
Q 018352           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (357)
Q Consensus        23 ~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~  100 (357)
                      .++..+ ..++.+|||||||+|..+..++.. +..+++|+|+ +.+++.|+++.+..+...+++|+.+|+...++     
T Consensus       181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----  254 (359)
T 1x19_A          181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-----  254 (359)
T ss_dssp             HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-----
T ss_pred             HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-----
Confidence            444444 346789999999999988888776 3569999999 99999999998766544469999999987654     


Q ss_pred             hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                         ..+|+|++..++|+ + +.++..++|++++++|||||++++..
T Consensus       255 ---~~~D~v~~~~vlh~-~-~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          255 ---PEADAVLFCRILYS-A-NEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             ---CCCSEEEEESCGGG-S-CHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             ---CCCCEEEEechhcc-C-CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence               23499999999998 5 45668899999999999999998774

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.42  E-value=1.2e-12  Score=118.06  Aligned_cols=120  Identities=12%  Similarity=0.058  Sum_probs=87.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~~F  106 (357)
                      ++.+|||||||+|..+..++..  ...+|+|+|+|+.+++.|+++++..+...+++++++|+...  ...+..  ..++|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~f  135 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDL--IPQLKKKYDVDTL  135 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH--GGGTTTTSCCCCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHH--HHHHHHhcCCCce
Confidence            5689999999999888887764  35799999999999999999988766555799999997431  111110  12689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC---CchHHHHHHH
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP---DSSTIWAKYQ  157 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p---d~~~i~~~~~  157 (357)
                      |+|++....++    ......++..+ ++|||||++++...   ....+++.++
T Consensus       136 D~V~~d~~~~~----~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~  184 (221)
T 3u81_A          136 DMVFLDHWKDR----YLPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVR  184 (221)
T ss_dssp             SEEEECSCGGG----HHHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHH
T ss_pred             EEEEEcCCccc----chHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHh
Confidence            99999876655    23445677777 99999999998733   3344444443

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.42  E-value=5.7e-13  Score=128.55  Aligned_cols=117  Identities=19%  Similarity=0.229  Sum_probs=92.0

Q ss_pred             HHHHHc-CCCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh
Q 018352           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (357)
Q Consensus        23 ~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~  100 (357)
                      .++..+ ..++.+|||+|||+|..+..++... ..+|+|+|+|+.|++.|+++....+.  ...++.+|+...       
T Consensus       187 ~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~d~~~~-------  257 (343)
T 2pjd_A          187 LLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV--EGEVFASNVFSE-------  257 (343)
T ss_dssp             HHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTT-------
T ss_pred             HHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCEEEEcccccc-------
Confidence            344444 2356799999999998888877764 35999999999999999999877643  467788988652       


Q ss_pred             hcCCcccEEEEccchhhcc-CCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          101 EKANQADLVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       101 ~~~~~FDlV~~~~~lh~~f-es~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                       ..++||+|+|+..+|+.. .+.+...++++++.++|||||.+++..++.
T Consensus       258 -~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          258 -VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             -CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             -ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence             246899999999888522 134567899999999999999999987665

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.42  E-value=1.9e-13  Score=123.64  Aligned_cols=97  Identities=18%  Similarity=0.239  Sum_probs=78.2

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCC-CCchhhhhhhc
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQEK  102 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~-~~~~~~~l~~~  102 (357)
                      ++..+..++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++..      +++|+++|+. ..++      .
T Consensus        41 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~------~  107 (226)
T 3m33_A           41 WLSRLLTPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANAP------HADVYEWNGKGELPA------G  107 (226)
T ss_dssp             HHHHHCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHCT------TSEEEECCSCSSCCT------T
T ss_pred             HHHhcCCCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhCC------CceEEEcchhhccCC------c
Confidence            344455788999999999998888777664 599999999999999998822      6899999984 3333      3


Q ss_pred             -CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352          103 -ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus       103 -~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                       +++||+|+|..          +...+++++.++|||||+++
T Consensus       108 ~~~~fD~v~~~~----------~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          108 LGAPFGLIVSRR----------GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             CCCCEEEEEEES----------CCSGGGGGHHHHEEEEEEEE
T ss_pred             CCCCEEEEEeCC----------CHHHHHHHHHHHcCCCcEEE
Confidence             57999999863          24467899999999999999

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.41  E-value=1.1e-12  Score=119.16  Aligned_cols=107  Identities=12%  Similarity=0.053  Sum_probs=83.2

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +.++.+|||+|||+|..+..++..  +..+++|+|+|+.|++.+.+..+.+   .+++|+++|+.....   ++...++|
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~---~~~~~~~~  148 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHK---YRMLIAMV  148 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGG---GGGGCCCE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhh---hcccCCcE
Confidence            346889999999999988888776  3469999999999988888777654   278999999976321   11135789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |+|+|...      ..+..+.++.++.++|||||++++.+.
T Consensus       149 D~V~~~~~------~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          149 DVIFADVA------QPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             EEEEECCC------CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEcCC------CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence            99998653      234456789999999999999998744

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.41  E-value=1.9e-12  Score=115.50  Aligned_cols=104  Identities=13%  Similarity=0.007  Sum_probs=83.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcC--CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~--~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..++.+|||+|||+|..+..++....  .+|+|+|+|+.+++.|+++....+.. ++.+..+|+.....      ..++|
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~f  147 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYE------PLAPY  147 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCG------GGCCE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCC------CCCCe
Confidence            35788999999999988888777642  69999999999999999988765432 58899999743211      24689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |+|++..++|+..          .++.++|||||++++.+++.
T Consensus       148 D~v~~~~~~~~~~----------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          148 DRIYTTAAGPKIP----------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             EEEEESSBBSSCC----------HHHHHTEEEEEEEEEEESSS
T ss_pred             eEEEECCchHHHH----------HHHHHHcCCCcEEEEEECCC
Confidence            9999999998832          47889999999999998764

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.41  E-value=1.3e-12  Score=127.82  Aligned_cols=113  Identities=17%  Similarity=0.143  Sum_probs=88.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCC--ceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~--~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ++.+|||+|||+|..+..++... ..+|+|+|+|+.|++.|+++++.++..  .+++|+.+|+.. .+      ..++||
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~------~~~~fD  294 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GV------EPFRFN  294 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TC------CTTCEE
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cC------CCCCee
Confidence            45899999999999988888774 679999999999999999998776432  258899999876 23      357899


Q ss_pred             EEEEccchhhcc-CCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          108 LVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       108 lV~~~~~lh~~f-es~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      +|+|+..+|... .......++++++.++|||||++++......
T Consensus       295 ~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~  338 (375)
T 4dcm_A          295 AVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL  338 (375)
T ss_dssp             EEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             EEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence            999998888521 0122345789999999999999999865553

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.41  E-value=6.4e-13  Score=121.37  Aligned_cols=104  Identities=17%  Similarity=0.151  Sum_probs=81.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ++.+|||||||+|..+..++.. +..+|+|+|+|+.|++.|+++.+..+.. +++++++|+....+..   ...++||+|
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~---~~~~~fD~V  145 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK---DVRESYDIV  145 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT---TTTTCEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccc---cccCCccEE
Confidence            5789999999999888777654 5569999999999999999988776543 5899999975432200   014789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +|..     +.   +...+++++.++|+|||+|++..
T Consensus       146 ~~~~-----~~---~~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          146 TARA-----VA---RLSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             EEEC-----CS---CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEec-----cC---CHHHHHHHHHHhcCCCCEEEEEe
Confidence            9866     22   25688999999999999998873

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.41  E-value=1.9e-12  Score=123.76  Aligned_cols=103  Identities=18%  Similarity=0.158  Sum_probs=86.9

Q ss_pred             CEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      .+|||+|||+|..+..++.. +..+++++|+ +.+++.|+++....+...+++|+.+|+.. ++       +++||+|++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-------~~~~D~v~~  239 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV-------PSNGDIYLL  239 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC-------CSSCSEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC-------CCCCCEEEE
Confidence            89999999999888888776 4568999999 99999999987654333379999999876 33       267999999


Q ss_pred             ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ..++|+ + +.++..+++++++++|+|||++++..
T Consensus       240 ~~vl~~-~-~~~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          240 SRIIGD-L-DEAASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             ESCGGG-C-CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             chhccC-C-CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999998 5 56667899999999999999999884

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.40  E-value=6.9e-14  Score=127.31  Aligned_cols=103  Identities=20%  Similarity=0.175  Sum_probs=83.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|+++++..+...+++|+++|+....       ..++||+|+
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D~v~  149 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-------SFLKADVVF  149 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-------GGCCCSEEE
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-------ccCCCCEEE
Confidence            67899999999999988888766 6999999999999999999887654447999999985532       247899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +...+|+ +.   .....+.+++++|+|||++++.
T Consensus       150 ~~~~~~~-~~---~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          150 LSPPWGG-PD---YATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             ECCCCSS-GG---GGGSSSBCTTTSCSSCHHHHHH
T ss_pred             ECCCcCC-cc---hhhhHHHHHHhhcCCcceeHHH
Confidence            9988877 32   2333677899999999986543

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.40  E-value=4.2e-13  Score=122.20  Aligned_cols=119  Identities=24%  Similarity=0.160  Sum_probs=80.0

Q ss_pred             HHHHHHHcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCC-hHHHHHH---HHHhHhcCCCceeEEEEcCCCCCch
Q 018352           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVA-TSGIGEA---RDTWENQRKNFIAEFFEADPCAENF   95 (357)
Q Consensus        21 ks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS-~~~l~~A---~~r~~~~~~~~~v~f~~~D~~~~~~   95 (357)
                      ...++..+..++.+|||||||+|..+..++.. +..+|+|+|+| +.|++.|   +++....+. .++.|.++|+...+.
T Consensus        14 ~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~~   92 (225)
T 3p2e_A           14 KDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLPF   92 (225)
T ss_dssp             HHHHHHHHTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCCG
T ss_pred             HHHHHHHhCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhhh
Confidence            34445555678889999999999888887754 45689999999 7777776   665544432 268999999876532


Q ss_pred             hhhhhhcCCcccEEEEccchhhccCC-HHHHHHHHHHHHhcccCCcEEEEE
Q 018352           96 ETQMQEKANQADLVCCFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        96 ~~~l~~~~~~FDlV~~~~~lh~~fes-~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .     ....+|.|.+.+........ ......++++++++|||||+|++.
T Consensus        93 ~-----~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~  138 (225)
T 3p2e_A           93 E-----LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV  138 (225)
T ss_dssp             G-----GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred             h-----ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence            1     12445555554432210000 011246899999999999999984

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.39  E-value=1.4e-12  Score=118.80  Aligned_cols=104  Identities=10%  Similarity=0.074  Sum_probs=82.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ++.+|||||||+|..+..++.. +..+|+|+|+|+.+++.|+++++..+...+++|+++|+..... ..   ..++||+|
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~---~~~~fD~V  146 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFE-NV---NDKVYDMI  146 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHH-HH---TTSCEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH-hh---ccCCccEE
Confidence            5689999999999888777664 4679999999999999999999876554579999999865311 01   25789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ++.....       ....+++.+.++|||||++++.
T Consensus       147 ~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          147 FIDAAKA-------QSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             EEETTSS-------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEcCcHH-------HHHHHHHHHHHhcCCCeEEEEe
Confidence            9765322       2556899999999999999885

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.39  E-value=1.8e-12  Score=116.75  Aligned_cols=105  Identities=15%  Similarity=0.125  Sum_probs=83.2

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCC----CceeEEEEcCCCCCchhhhhhhc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~----~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      ..++.+|||+|||+|..+..++.. + ..+|+|+|+|+.+++.|+++....+.    ..++.++++|+.....      .
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~  148 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA------E  148 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG------G
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc------c
Confidence            557889999999999888877765 3 25999999999999999998875421    2268999999864332      2


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .++||+|++...++.+          ++++.++|||||+++++++..
T Consensus       149 ~~~fD~i~~~~~~~~~----------~~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          149 EAPYDAIHVGAAAPVV----------PQALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             GCCEEEEEECSBBSSC----------CHHHHHTEEEEEEEEEEESCT
T ss_pred             CCCcCEEEECCchHHH----------HHHHHHhcCCCcEEEEEEecC
Confidence            4689999998877662          367889999999999987653

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.39  E-value=4.7e-12  Score=112.18  Aligned_cols=101  Identities=13%  Similarity=0.029  Sum_probs=82.1

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+..+.. ++.++++|+....       +.++||+|
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-------~~~~~D~i  136 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP-------SEPPFDGV  136 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC-------CCSCEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCC-------ccCCcCEE
Confidence            4689999999999988888775 4679999999999999999988765443 4899999987643       24689999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +|..     +.   ....+++++.++|+|||++++...
T Consensus       137 ~~~~-----~~---~~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          137 ISRA-----FA---SLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             ECSC-----SS---SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             EEec-----cC---CHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9754     22   245889999999999999998853

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.39  E-value=1.3e-13  Score=122.05  Aligned_cols=115  Identities=15%  Similarity=0.050  Sum_probs=67.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++....+.  +++++++|+.. .+.. .....++||+
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~-~~~~-~~~~~~~fD~  104 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIE-WLIE-RAERGRPWHA  104 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHH-HHHH-HHHTTCCBSE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHh-hhhh-hhhccCcccE
Confidence            567899999999999888887774 45999999999999999998876543  67788888755 3311 0012378999


Q ss_pred             EEEccchhhcc-----CC-----------------HHHHHHHHHHHHhcccCCcE-EEEEeCC
Q 018352          109 VCCFQHLQMCF-----ET-----------------EERARRLLQNVSSLLKPGGY-FLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~f-----es-----------------~~~~~~~L~~i~~~LkpGG~-fi~t~pd  148 (357)
                      |+|+..++..-     ..                 .+....+++++.++|||||+ +++.++.
T Consensus       105 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  167 (215)
T 4dzr_A          105 IVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH  167 (215)
T ss_dssp             EEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT
T ss_pred             EEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            99975443210     00                 01127889999999999999 5555543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.39  E-value=3.2e-12  Score=123.40  Aligned_cols=108  Identities=19%  Similarity=0.171  Sum_probs=89.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||||||+|..+..++.. +..+++++|+ +.+++.|+++....+...+++|+.+|+.. .+      + ..||+
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~------~-~~~D~  252 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL------P-RKADA  252 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC------S-SCEEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CC------C-CCccE
Confidence            46789999999999888888776 3458999999 99999999998776544479999999875 33      2 34999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |++..++|+ + ..++..+++++++++|+|||++++..+.
T Consensus       253 v~~~~vl~~-~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          253 IILSFVLLN-W-PDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEESCGGG-S-CHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEcccccC-C-CHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            999999998 5 4556678999999999999999988554

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.39  E-value=3.4e-12  Score=123.49  Aligned_cols=116  Identities=18%  Similarity=0.155  Sum_probs=91.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..++.+|||+|||+|..+..++...  ..+++|+|+|+.|++.|+++.+..+.. +++|.++|+...+.      ....|
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~------~~~~~  273 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPR------FFPEV  273 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGG------TCCCC
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcc------ccCCC
Confidence            3467899999999999888877753  469999999999999999999877655 78999999876443      34679


Q ss_pred             cEEEEccchhhccCC----HHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352          107 DLVCCFQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGITPDSST  151 (357)
Q Consensus       107 DlV~~~~~lh~~fes----~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~  151 (357)
                      |+|+|+..++....+    ......+++++.++|||||.+++.+++...
T Consensus       274 D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~  322 (354)
T 3tma_A          274 DRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPAL  322 (354)
T ss_dssp             SEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHH
T ss_pred             CEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHH
Confidence            999997654432211    223478999999999999999999998654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.39  E-value=7e-13  Score=118.79  Aligned_cols=111  Identities=13%  Similarity=0.030  Sum_probs=78.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHh---cCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWEN---QRKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~---~~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      ..++.+|||+|||+|..+..++... ..+|+|+|+|+.||+.+.++.+.   .....++.|+++|+...++      ..+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~------~~~   98 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPP------LSG   98 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCS------CCC
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCC------CCC
Confidence            4578899999999999888887763 56999999999999965443322   1112278999999988665      345


Q ss_pred             cccEEEEccchhhcc-CCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          105 QADLVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       105 ~FDlV~~~~~lh~~f-es~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      . |.|.+.+..+... .+..+...++++++++|||||+|+++.
T Consensus        99 ~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A           99 V-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             E-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             C-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence            5 7766433211100 011223688999999999999999864

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.38  E-value=7e-12  Score=116.91  Aligned_cols=111  Identities=14%  Similarity=0.122  Sum_probs=86.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++.+..+.. ++.|+++|+... +      ..++||+
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~-~------~~~~fD~  179 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSA-L------AGQQFAM  179 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGG-G------TTCCEEE
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhh-c------ccCCccE
Confidence            46789999999999988888755 4669999999999999999998766443 689999998652 2      2478999


Q ss_pred             EEEccchhhc-----------cCC----------HHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQMC-----------FET----------EERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~-----------fes----------~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+++..++..           ++.          .+..+.+++++.++|+|||++++..+.
T Consensus       180 Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~  240 (276)
T 2b3t_A          180 IVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW  240 (276)
T ss_dssp             EEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred             EEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            9998543321           011          145688999999999999999988543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.38  E-value=2.2e-12  Score=116.26  Aligned_cols=108  Identities=11%  Similarity=0.032  Sum_probs=83.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcC------CeEEEEeCChHHHHHHHHHhHhcCC----CceeEEEEcCCCCCchhhh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALI------ANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQ   98 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~------~~v~GiDiS~~~l~~A~~r~~~~~~----~~~v~f~~~D~~~~~~~~~   98 (357)
                      ..++.+|||+|||+|..+..++....      .+|+|+|+|+.+++.|+++.+..+.    ..++.++.+|+........
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            56788999999999988877776532      5999999999999999999876531    2368999999876430000


Q ss_pred             hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus        99 l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      .  ..++||+|++..++|.+          ++++.++|+|||++++.++.
T Consensus       158 ~--~~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          158 K--ELGLFDAIHVGASASEL----------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             H--HHCCEEEEEECSBBSSC----------CHHHHHHEEEEEEEEEEEEE
T ss_pred             c--cCCCcCEEEECCchHHH----------HHHHHHhcCCCcEEEEEEcc
Confidence            0  24689999999887762          47788999999999998764

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.38  E-value=2.5e-12  Score=126.27  Aligned_cols=123  Identities=11%  Similarity=0.068  Sum_probs=92.8

Q ss_pred             HHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCc-eeEEEEcCCCCCchhhhhhhcC
Q 018352           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~-~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      +..++.++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++++.++... +++|+++|+..  +...+....
T Consensus       206 ~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~--~l~~~~~~~  283 (385)
T 2b78_A          206 LINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD--YFKYARRHH  283 (385)
T ss_dssp             HHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH--HHHHHHHTT
T ss_pred             HHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHH--HHHHHHHhC
Confidence            344435678999999999998888877677799999999999999999998776544 68999999854  111121124


Q ss_pred             CcccEEEEccch-----hhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          104 NQADLVCCFQHL-----QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       104 ~~FDlV~~~~~l-----h~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .+||+|++....     +...........+++.+.++|+|||++++++...
T Consensus       284 ~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          284 LTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             CCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            689999985432     2323345667788999999999999999886554

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.37  E-value=3.4e-12  Score=114.64  Aligned_cols=108  Identities=12%  Similarity=0.039  Sum_probs=83.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc-CCccc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~-~~~FD  107 (357)
                      ++.+|||||||+|..+..++.. + ..+|+|+|+++.+++.|+++++..+...+++++++|+..  ....+... .++||
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~fD  135 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD--SLQQIENEKYEPFD  135 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH--HHHHHHHTTCCCCS
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHHHHhcCCCCcC
Confidence            5689999999999888887766 2 569999999999999999998876555569999999754  11112111 26799


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +|++....+       ....+++++.++|+|||++++..+
T Consensus       136 ~v~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          136 FIFIDADKQ-------NNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             EEEECSCGG-------GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             EEEEcCCcH-------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence            999876433       245789999999999999998743

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.37  E-value=2.5e-12  Score=118.37  Aligned_cols=107  Identities=9%  Similarity=0.054  Sum_probs=83.3

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++.+|||||||+|..+..++.. + ..+|+|+|+|+.+++.|+++++..+...+++++++|+... + ..+. ..++||+
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-l-~~~~-~~~~fD~  139 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS-L-ESLG-ECPAFDL  139 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH-H-HTCC-SCCCCSE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-H-HhcC-CCCCeEE
Confidence            5789999999999888877765 2 5799999999999999999998766555799999997541 1 1110 1358999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |++....       .....+++++.++|||||++++...
T Consensus       140 V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          140 IFIDADK-------PNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             EEECSCG-------GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             EEECCch-------HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            9986532       2345689999999999999998743

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.37  E-value=3.7e-12  Score=122.70  Aligned_cols=127  Identities=16%  Similarity=0.108  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCc-eeEEEEcCCCCCchh
Q 018352           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFE   96 (357)
Q Consensus        18 nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~-~v~f~~~D~~~~~~~   96 (357)
                      .|+...+..  ..++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.|+++.+.++... +++|+++|+....  
T Consensus       142 ~~l~~~~~~--~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l--  216 (332)
T 2igt_A          142 EWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI--  216 (332)
T ss_dssp             HHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH--
T ss_pred             HHHHHHHHh--cCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHH--
Confidence            455444321  34678999999999999888887766 99999999999999999988765433 4899999975421  


Q ss_pred             hhhhhcCCcccEEEEccc---hh---hccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           97 TQMQEKANQADLVCCFQH---LQ---MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        97 ~~l~~~~~~FDlV~~~~~---lh---~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ..+....++||+|++...   ..   ..+...+....+++++.++|+|||+|+++..+.
T Consensus       217 ~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          217 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             HHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            111112468999999432   11   012235567889999999999999988775443

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.37  E-value=4.4e-12  Score=119.45  Aligned_cols=111  Identities=15%  Similarity=0.060  Sum_probs=84.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc---c
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA---D  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F---D  107 (357)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++.+..+...+++|+++|+.. .+       .++|   |
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~-------~~~f~~~D  194 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PF-------KEKFASIE  194 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GG-------GGGTTTCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hc-------ccccCCCC
Confidence            56799999999999888887765569999999999999999998876554469999999876 22       1468   9


Q ss_pred             EEEEccchhhc---------cCCH------HHHHHHHHHHH-hcccCCcEEEEEeCCc
Q 018352          108 LVCCFQHLQMC---------FETE------ERARRLLQNVS-SLLKPGGYFLGITPDS  149 (357)
Q Consensus       108 lV~~~~~lh~~---------fes~------~~~~~~L~~i~-~~LkpGG~fi~t~pd~  149 (357)
                      +|+|+......         ++..      .+...+++++. +.|+|||++++.+...
T Consensus       195 ~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~  252 (284)
T 1nv8_A          195 MILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  252 (284)
T ss_dssp             EEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             EEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence            99997321100         1111      11226899999 9999999999987654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.36  E-value=6.1e-12  Score=115.33  Aligned_cols=108  Identities=16%  Similarity=0.140  Sum_probs=87.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..++.+|||+|||+|..+..++.. + ..+++|+|+|+.+++.|+++++..+...+++++++|+... +      +.++|
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~------~~~~~  163 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-I------EEENV  163 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-C------CCCSE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-c------CCCCc
Confidence            357889999999999988888776 3 6799999999999999999987765544599999998743 3      45789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      |+|++...         +...+++++.++|+|||++++..|+.+.+
T Consensus       164 D~v~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  200 (255)
T 3mb5_A          164 DHVILDLP---------QPERVVEHAAKALKPGGFFVAYTPCSNQV  200 (255)
T ss_dssp             EEEEECSS---------CGGGGHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred             CEEEECCC---------CHHHHHHHHHHHcCCCCEEEEEECCHHHH
Confidence            99988432         23467999999999999999998887543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.36  E-value=2.4e-12  Score=118.02  Aligned_cols=114  Identities=17%  Similarity=0.161  Sum_probs=83.1

Q ss_pred             CCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhc--------CCCceeEEEEcCCCCCchhhhhhh
Q 018352           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQ--------RKNFIAEFFEADPCAENFETQMQE  101 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~--------~~~~~v~f~~~D~~~~~~~~~l~~  101 (357)
                      ++.+|||||||+|..+..++... ..+|+|+|+|+.+++.|+++.+..        +. .++.++++|+... +...+  
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~-l~~~~--  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKF-LPNFF--  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSC-GGGTS--
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHH-HHHhc--
Confidence            56799999999999998888775 458999999999999999887653        22 3799999998752 11111  


Q ss_pred             cCCcccEEEEccchhhccCCHHH-----HHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          102 KANQADLVCCFQHLQMCFETEER-----ARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes~~~-----~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ..+++|.|++.+.-.+ +.....     ...+++++.++|+|||+|++.+...
T Consensus       125 ~~~~~d~v~~~~p~p~-~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~  176 (246)
T 2vdv_E          125 EKGQLSKMFFCFPDPH-FKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVK  176 (246)
T ss_dssp             CTTCEEEEEEESCCCC-------CSSCCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             cccccCEEEEECCCcc-cccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccH
Confidence            3578999986553222 111000     1478999999999999999977664

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.36  E-value=3.9e-12  Score=128.35  Aligned_cols=106  Identities=16%  Similarity=0.091  Sum_probs=85.4

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..+++.+..+|+|+|+|+ +++.|+++.+.++...+++|+.+|+...++       .++||+|
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~-------~~~fD~I  228 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-------PEQVDII  228 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC-------SSCEEEE
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc-------CCCeEEE
Confidence            36789999999999888877776677999999998 999999998877655579999999977544       3689999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|...+++ +.. +.....+.++.++|||||+++..
T Consensus       229 vs~~~~~~-~~~-e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          229 ISEPMGYM-LFN-ERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             ECCCCHHH-HTC-HHHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEeCchHh-cCc-HHHHHHHHHHHHhcCCCCEEEEE
Confidence            99776555 323 34556777999999999999854

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.36  E-value=3.9e-12  Score=108.46  Aligned_cols=109  Identities=19%  Similarity=0.103  Sum_probs=81.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh--hcCC
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~--~~~~  104 (357)
                      ..++.+|||+|||+|..+..++.. + ..+++|+|+|+ +++.           .++.++++|+...+....+.  ..++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCC
Confidence            457889999999999888888776 3 37999999999 7532           26889999997754111111  1357


Q ss_pred             cccEEEEccchhhccCCH--HH------HHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          105 QADLVCCFQHLQMCFETE--ER------ARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~--~~------~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      +||+|++...+|+ +...  +.      ...+++++.++|+|||.++++++...
T Consensus        88 ~~D~i~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           88 KVQVVMSDMAPNM-SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             CEEEEEECCCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             ceeEEEECCCccc-cCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            8999999888776 3232  11      16899999999999999999876553

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.36  E-value=3e-12  Score=117.13  Aligned_cols=109  Identities=13%  Similarity=0.072  Sum_probs=88.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhc-CCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~-~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      ..++.+|||+|||+|..+..++.. + ..+++|+|+|+.+++.|+++++.. + ..++.+.++|+...++      +.++
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~------~~~~  166 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAEL------EEAA  166 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCC------CTTC
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCC------CCCC
Confidence            357889999999999888888776 3 579999999999999999988765 3 3378999999876544      3578


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHH
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~  153 (357)
                      ||+|++..      .   +...+++++.++|+|||++++..|+.+.+.
T Consensus       167 ~D~v~~~~------~---~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  205 (258)
T 2pwy_A          167 YDGVALDL------M---EPWKVLEKAALALKPDRFLVAYLPNITQVL  205 (258)
T ss_dssp             EEEEEEES------S---CGGGGHHHHHHHEEEEEEEEEEESCHHHHH
T ss_pred             cCEEEECC------c---CHHHHHHHHHHhCCCCCEEEEEeCCHHHHH
Confidence            99998732      1   234679999999999999999999875543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.35  E-value=4.4e-12  Score=114.37  Aligned_cols=106  Identities=17%  Similarity=0.102  Sum_probs=81.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..++.+|||+|||+|..+..++.. + ..+|+|+|+|+.|++.++++.+..   .++.++++|+........   ..++|
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~---~~~~~  144 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRA---LVPKV  144 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTT---TCCCE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhc---ccCCc
Confidence            346789999999999888888765 2 469999999999999998887654   378999999876321111   23589


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|++...      .......+++++.++|||||++++..
T Consensus       145 D~v~~~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          145 DVIFEDVA------QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEECCC------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCC------CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99998653      22345567999999999999999873

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.35  E-value=1.3e-12  Score=118.62  Aligned_cols=103  Identities=14%  Similarity=0.078  Sum_probs=81.4

Q ss_pred             CCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           32 YVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      +.+|||||||+|..+..++..  +.++|+++|+|+.+++.|+++++..+.. .+++++++|+....  ..+  ..++||+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l--~~~--~~~~fD~  132 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM--SRL--ANDSYQL  132 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG--GGS--CTTCEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH--HHh--cCCCcCe
Confidence            459999999999888877775  3579999999999999999999876655 57999999875421  111  2578999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |++....+       ....+++.+.++|||||++++.
T Consensus       133 V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          133 VFGQVSPM-------DLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             EEECCCTT-------THHHHHHHHHHHEEEEEEEEET
T ss_pred             EEEcCcHH-------HHHHHHHHHHHHcCCCcEEEEe
Confidence            99876332       2456899999999999999985

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.35  E-value=1.9e-12  Score=126.62  Aligned_cols=104  Identities=16%  Similarity=0.070  Sum_probs=84.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||||||+|......++++..+|+|+|.|+ |++.|++..+.++...+++++++|+....+       +++||+|+
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l-------pe~~Dviv  154 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL-------PEQVDAIV  154 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC-------SSCEEEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC-------CccccEEE
Confidence            6789999999999666666667888999999996 889999998888777789999999988665       47899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                      |-..-+. +..+.....++....++|||||.++
T Consensus       155 sE~~~~~-l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          155 SEWMGYG-LLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             CCCCBTT-BTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             eeccccc-ccccchhhhHHHHHHhhCCCCceEC
Confidence            8543222 3345567788888999999999886

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.35  E-value=2.6e-12  Score=115.48  Aligned_cols=107  Identities=17%  Similarity=0.082  Sum_probs=82.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc--CCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--ANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~--~~~F  106 (357)
                      ++.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.|+++++..+...+++|+++|+...  ...+...  .++|
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~f  141 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT--LAELIHAGQAWQY  141 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH--HHHHHTTTCTTCE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH--HHHhhhccCCCCc
Confidence            5679999999999888887765  25799999999999999999998766555699999997432  1111101  1789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|++....       .....+++++.++|||||++++..
T Consensus       142 D~v~~~~~~-------~~~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          142 DLIYIDADK-------ANTDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             EEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cEEEECCCH-------HHHHHHHHHHHHhcCCCcEEEEeC
Confidence            999876532       235678999999999999999873

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.35  E-value=2.5e-12  Score=119.97  Aligned_cols=106  Identities=14%  Similarity=0.066  Sum_probs=85.9

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhc-CCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~-~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      .++.+|||+|||+|..+..++..  +..+++|+|+|+.+++.|+++.+.. + ..+++++++|+.. .+      ..++|
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~-~~------~~~~f  180 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-IGNVRTSRSDIAD-FI------SDQMY  180 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-CTTEEEECSCTTT-CC------CSCCE
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECchhc-cC------cCCCc
Confidence            46789999999999988888776  3569999999999999999998765 3 2368999999876 33      34789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      |+|++..      .   +...+++++.++|||||++++.+++....
T Consensus       181 D~Vi~~~------~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~  217 (275)
T 1yb2_A          181 DAVIADI------P---DPWNHVQKIASMMKPGSVATFYLPNFDQS  217 (275)
T ss_dssp             EEEEECC------S---CGGGSHHHHHHTEEEEEEEEEEESSHHHH
T ss_pred             cEEEEcC------c---CHHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence            9999832      1   23578999999999999999999987543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.35  E-value=1.1e-11  Score=123.31  Aligned_cols=110  Identities=16%  Similarity=0.095  Sum_probs=82.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHH-------HHHhHhcCCC-ceeEEEEcCCCCCchhhhh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEA-------RDTWENQRKN-FIAEFFEADPCAENFETQM   99 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A-------~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l   99 (357)
                      ..++.+|||||||+|..+..++.. +..+|+|+|+|+.+++.|       +++.+..+.. .+++++++|.......  +
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~--~  317 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR--V  317 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH--H
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccc--c
Confidence            357889999999999888888775 556899999999999998       7776654421 3789999876543210  1


Q ss_pred             hhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ....++||+|+++..++    . .+...+|+++.++|||||++++.
T Consensus       318 ~~~~~~FDvIvvn~~l~----~-~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          318 AELIPQCDVILVNNFLF----D-EDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             HHHGGGCSEEEECCTTC----C-HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             ccccCCCCEEEEeCccc----c-ccHHHHHHHHHHhCCCCeEEEEe
Confidence            00136899999876442    1 45667899999999999999976

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.35  E-value=8.5e-12  Score=114.36  Aligned_cols=106  Identities=13%  Similarity=0.034  Sum_probs=78.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +.++.+|||+|||+|+.+..++..  +.++|+|+|+|+.|++...+..+..   .++.++++|+........   ..++|
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~---~~~~~  147 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKS---VVENV  147 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTT---TCCCE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhc---cccce
Confidence            458899999999999988887765  4669999999999986655444332   278999999876432111   24689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|++..+.      ..+.+.++.++.+.|||||+|++.+
T Consensus       148 D~I~~d~a~------~~~~~il~~~~~~~LkpGG~lvisi  181 (232)
T 3id6_C          148 DVLYVDIAQ------PDQTDIAIYNAKFFLKVNGDMLLVI  181 (232)
T ss_dssp             EEEEECCCC------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecCCC------hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence            999987643      2345556677788999999999884

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.35  E-value=3.9e-12  Score=115.31  Aligned_cols=107  Identities=15%  Similarity=0.129  Sum_probs=84.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++++..+...++.++.+|+.....  ... ..++||+|
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~-~~~~fD~I  130 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGE--KLE-LYPLFDVL  130 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHH--HHT-TSCCEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH--hcc-cCCCccEE
Confidence            6789999999999888887776 3579999999999999999998776544468999999865211  110 14789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      ++....+       ....+++++.++|+|||++++...
T Consensus       131 ~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          131 FIDAAKG-------QYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             EEEGGGS-------CHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             EECCCHH-------HHHHHHHHHHHHcCCCeEEEEEcC
Confidence            9877543       356789999999999999998743

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.35  E-value=1.1e-11  Score=112.67  Aligned_cols=108  Identities=11%  Similarity=0.057  Sum_probs=87.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++.. ..+++|+|+|+.+++.|+++.+..+...++.+..+|+....+      ..++||+|
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~D~v  162 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV------PEGIFHAA  162 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC------CTTCBSEE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc------CCCcccEE
Confidence            47889999999999888888777 669999999999999999998765543478999999876432      24689999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHH
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~  153 (357)
                      ++...         +...+++++.++|+|||++++.+++.+.+.
T Consensus       163 ~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  197 (248)
T 2yvl_A          163 FVDVR---------EPWHYLEKVHKSLMEGAPVGFLLPTANQVI  197 (248)
T ss_dssp             EECSS---------CGGGGHHHHHHHBCTTCEEEEEESSHHHHH
T ss_pred             EECCc---------CHHHHHHHHHHHcCCCCEEEEEeCCHHHHH
Confidence            87431         234678999999999999999999875543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.34  E-value=5.1e-12  Score=118.36  Aligned_cols=111  Identities=11%  Similarity=0.098  Sum_probs=83.5

Q ss_pred             CEEEEECCCC--ChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCCcc
Q 018352           33 VTVCDLYCGA--GVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (357)
Q Consensus        33 ~~VLDlGCG~--G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~~F  106 (357)
                      .+|||||||+  ++.+..+++.  +..+|+++|.|+.||+.|++++.... ..++.|+++|+.....  .+..  ....|
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~--~l~~~~~~~~~  156 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPAS--ILDAPELRDTL  156 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHH--HHTCHHHHTTC
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhh--hhccccccccc
Confidence            5899999997  5566666553  56799999999999999999986532 2368999999977421  0100  02345


Q ss_pred             c-----EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          107 D-----LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       107 D-----lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |     .|+++.+||| +...++...+++.+.+.|+|||+|+++..
T Consensus       157 D~~~p~av~~~avLH~-l~d~~~p~~~l~~l~~~L~PGG~Lvls~~  201 (277)
T 3giw_A          157 DLTRPVALTVIAIVHF-VLDEDDAVGIVRRLLEPLPSGSYLAMSIG  201 (277)
T ss_dssp             CTTSCCEEEEESCGGG-SCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred             CcCCcchHHhhhhHhc-CCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence            5     5778899999 54444468899999999999999998843

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.34  E-value=8e-12  Score=116.09  Aligned_cols=111  Identities=15%  Similarity=0.082  Sum_probs=88.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhc-C-CCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-R-KNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~-~-~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      ..++.+|||+|||+|..+..++..  +..+++|+|+|+.+++.|+++.+.. + ...++.++++|+....+      ..+
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~------~~~  170 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL------PDG  170 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC------CTT
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC------CCC
Confidence            457889999999999988888775  3579999999999999999988654 2 23368999999876544      357


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~  154 (357)
                      +||+|++...         +...+++++.++|+|||++++.+|+.+.+.+
T Consensus       171 ~~D~v~~~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~  211 (280)
T 1i9g_A          171 SVDRAVLDML---------APWEVLDAVSRLLVAGGVLMVYVATVTQLSR  211 (280)
T ss_dssp             CEEEEEEESS---------CGGGGHHHHHHHEEEEEEEEEEESSHHHHHH
T ss_pred             ceeEEEECCc---------CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHH
Confidence            8999998431         1336799999999999999999999766544

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.33  E-value=5.4e-12  Score=111.27  Aligned_cols=109  Identities=11%  Similarity=0.104  Sum_probs=77.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-c--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc-----------
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-----------   94 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~-----------   94 (357)
                      +.++.+|||||||+|..+..++.. +  ..+|+|+|+|+.+        .    ..++.++++|+....           
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~----~~~v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------P----IPNVYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------C----CTTCEEEECCTTTTSSCCC-------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------C----CCCceEEEccccchhhhhhccccccc
Confidence            567889999999999988888765 3  4699999999831        0    125789999997754           


Q ss_pred             ------hhhhhh--hcCCcccEEEEccchhhccCC-HHH------HHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           95 ------FETQMQ--EKANQADLVCCFQHLQMCFET-EER------ARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        95 ------~~~~l~--~~~~~FDlV~~~~~lh~~fes-~~~------~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                            ....+.  ...++||+|+|..++|+.-.+ .+.      ...+++++.++|||||.|++.+...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG  157 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence                  000000  134789999998877762111 111      2358999999999999999876543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.33  E-value=7e-12  Score=119.56  Aligned_cols=103  Identities=12%  Similarity=0.029  Sum_probs=82.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..++.+|||+|||+|..+..++...  ..+|+|+|+|+++++.|+++.+..+.. ++++..+|+.....      ..++|
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~------~~~~f  145 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVP------EFSPY  145 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG------GGCCE
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhccc------cCCCe
Confidence            3578899999999998888777653  357999999999999999998765443 48999999865332      24789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|++..++|+ +.         +++.++|||||++++.+..
T Consensus       146 D~Iv~~~~~~~-~~---------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          146 DVIFVTVGVDE-VP---------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             EEEEECSBBSC-CC---------HHHHHHEEEEEEEEEEBCB
T ss_pred             EEEEEcCCHHH-HH---------HHHHHhcCCCcEEEEEECC
Confidence            99999998887 31         4678899999999998644

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.33  E-value=5.7e-12  Score=116.44  Aligned_cols=105  Identities=13%  Similarity=0.007  Sum_probs=82.1

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ++.+|||||||+|..+..++.. +..+|+|+|+|+.+++.|+++.+..+.. +++++++|+.......   ...++||+|
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~---~~~~~fD~I  155 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREA---GHREAYARA  155 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTST---TTTTCEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhccc---ccCCCceEE
Confidence            5789999999999887777765 5679999999999999999998876543 5999999975422100   023789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +|..     +.+   ...+++.+.++|||||+|++...
T Consensus       156 ~s~a-----~~~---~~~ll~~~~~~LkpgG~l~~~~g  185 (249)
T 3g89_A          156 VARA-----VAP---LCVLSELLLPFLEVGGAAVAMKG  185 (249)
T ss_dssp             EEES-----SCC---HHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             EECC-----cCC---HHHHHHHHHHHcCCCeEEEEEeC
Confidence            9864     222   45789999999999999998753

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.33  E-value=8.7e-12  Score=113.36  Aligned_cols=104  Identities=13%  Similarity=0.098  Sum_probs=82.6

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++.+..+.. ++.+..+|+. ..+.     ...+||+
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~-~~~~-----~~~~fD~  161 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGS-KGFP-----PKAPYDV  161 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGG-GCCG-----GGCCEEE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcc-cCCC-----CCCCccE
Confidence            4577899999999998888877764379999999999999999998765432 4889999972 2221     1246999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |++..++++..          .++.++|+|||++++.+++.
T Consensus       162 Ii~~~~~~~~~----------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          162 IIVTAGAPKIP----------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             EEECSBBSSCC----------HHHHHTEEEEEEEEEEECSS
T ss_pred             EEECCcHHHHH----------HHHHHhcCCCcEEEEEEecC
Confidence            99999888732          36788999999999998775

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.32  E-value=2.2e-11  Score=116.81  Aligned_cols=115  Identities=17%  Similarity=0.056  Sum_probs=85.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cC-CeEEEEeCChHHHHHHHHHhHhcC----------CCceeEEEEcCCCCCchh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQR----------KNFIAEFFEADPCAENFE   96 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~-~~v~GiDiS~~~l~~A~~r~~~~~----------~~~~v~f~~~D~~~~~~~   96 (357)
                      ..++.+|||+|||+|..+..++.. +. .+|+|+|+++.+++.|+++....+          ...++++.++|+..... 
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-  181 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-  181 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-
Confidence            457889999999999888888775 33 799999999999999999886421          12378999999977421 


Q ss_pred             hhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus        97 ~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                       .+  ..++||+|++....++         .++.++.++|+|||++++..++.+.+.+.+
T Consensus       182 -~~--~~~~fD~V~~~~~~~~---------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~  229 (336)
T 2b25_A          182 -DI--KSLTFDAVALDMLNPH---------VTLPVFYPHLKHGGVCAVYVVNITQVIELL  229 (336)
T ss_dssp             ---------EEEEEECSSSTT---------TTHHHHGGGEEEEEEEEEEESSHHHHHHHH
T ss_pred             -cc--CCCCeeEEEECCCCHH---------HHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Confidence             01  3467999998653222         268999999999999999999876655433

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.32  E-value=8.2e-12  Score=122.72  Aligned_cols=125  Identities=17%  Similarity=0.097  Sum_probs=94.1

Q ss_pred             HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      .++..+..++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++++.++...+++|+++|+...  ...+...
T Consensus       209 ~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~--~~~~~~~  286 (396)
T 2as0_A          209 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE--MEKLQKK  286 (396)
T ss_dssp             HHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH--HHHHHHT
T ss_pred             HHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHH--HHHHHhh
Confidence            44555655788999999999999988887767799999999999999999998775544789999997542  1111112


Q ss_pred             CCcccEEEEccchh-----hccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          103 ANQADLVCCFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       103 ~~~FDlV~~~~~lh-----~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .++||+|++.....     ..+........++.++.++|+|||+++.++++.
T Consensus       287 ~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          287 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            57899999854211     111123567789999999999999999887665

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.31  E-value=2.2e-11  Score=107.63  Aligned_cols=101  Identities=12%  Similarity=-0.002  Sum_probs=76.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++.+      +++++++|+..  +       +++||+|
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~--~-------~~~~D~v  114 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSE--I-------SGKYDTW  114 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGG--C-------CCCEEEE
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHH--C-------CCCeeEE
Confidence            4678999999999988888877766689999999999999998875      57899999865  2       2689999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ++...+|+ +.. .....+++.+.+.|  |+.++...+..
T Consensus       115 ~~~~p~~~-~~~-~~~~~~l~~~~~~~--g~~~~~~~~~~  150 (200)
T 1ne2_A          115 IMNPPFGS-VVK-HSDRAFIDKAFETS--MWIYSIGNAKA  150 (200)
T ss_dssp             EECCCC---------CHHHHHHHHHHE--EEEEEEEEGGG
T ss_pred             EECCCchh-ccC-chhHHHHHHHHHhc--CcEEEEEcCch
Confidence            99998888 322 23457899999998  66555555544

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.31  E-value=3.5e-12  Score=125.11  Aligned_cols=107  Identities=14%  Similarity=0.199  Sum_probs=80.3

Q ss_pred             HHHHcCCCCCEEEEECCC------CChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch
Q 018352           24 LIKIYSHPYVTVCDLYCG------AGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG------~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~   95 (357)
                      ++..+..+..+|||||||      +|+.+..+...  +..+|+|+|+|+.|.      ..    ..+++|+++|+.+.++
T Consensus       209 lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~~----~~rI~fv~GDa~dlpf  278 (419)
T 3sso_A          209 HFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------VD----ELRIRTIQGDQNDAEF  278 (419)
T ss_dssp             HHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------GC----BTTEEEEECCTTCHHH
T ss_pred             HHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------hc----CCCcEEEEecccccch
Confidence            445555677899999999      66666555544  567999999999983      11    2379999999988666


Q ss_pred             hhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        96 ~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ...+....++||+|+|.. .|+    ..+..++|+++.++|||||+|++.
T Consensus       279 ~~~l~~~d~sFDlVisdg-sH~----~~d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          279 LDRIARRYGPFDIVIDDG-SHI----NAHVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             HHHHHHHHCCEEEEEECS-CCC----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhhhhcccCCccEEEECC-ccc----chhHHHHHHHHHHhcCCCeEEEEE
Confidence            432222257899999875 455    356788999999999999999987

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.31  E-value=5.4e-12  Score=114.04  Aligned_cols=104  Identities=11%  Similarity=0.081  Sum_probs=81.6

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-c------CCeEEEEeCChHHHHHHHHHhHhcCC----CceeEEEEcCCCCCchhh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-L------IANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFET   97 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~------~~~v~GiDiS~~~l~~A~~r~~~~~~----~~~v~f~~~D~~~~~~~~   97 (357)
                      ..++.+|||+|||+|..+..++.. +      ..+|+|+|+++.+++.|+++......    ..++.++++|+.. .+. 
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~-  159 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYP-  159 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCG-
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCC-
Confidence            467889999999999888877764 3      25999999999999999998765320    1268999999865 221 


Q ss_pred             hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus        98 ~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                          ..++||+|++..++|++          ++++.++|||||++++.+..
T Consensus       160 ----~~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          160 ----PNAPYNAIHVGAAAPDT----------PTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             ----GGCSEEEEEECSCBSSC----------CHHHHHTEEEEEEEEEEESC
T ss_pred             ----cCCCccEEEECCchHHH----------HHHHHHHhcCCCEEEEEEec
Confidence                13689999999988873          26788999999999998754

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.30  E-value=9.3e-12  Score=120.07  Aligned_cols=110  Identities=19%  Similarity=0.098  Sum_probs=82.4

Q ss_pred             HHHHc-CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh
Q 018352           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (357)
Q Consensus        24 Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~  101 (357)
                      ++..+ ..++.+|||||||+|..+..+++. +..+++++|++ .++.  +++.+......+++|+.+|+. .++      
T Consensus       176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~------  245 (348)
T 3lst_A          176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFL-REV------  245 (348)
T ss_dssp             HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTT-TCC------
T ss_pred             HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCC-CCC------
Confidence            44444 246789999999999988888776 44589999994 4444  222222222346999999987 333      


Q ss_pred             cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +  +||+|++..++|+ + +.++..++|++++++|||||++++..+
T Consensus       246 p--~~D~v~~~~vlh~-~-~d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          246 P--HADVHVLKRILHN-W-GDEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             C--CCSEEEEESCGGG-S-CHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             C--CCcEEEEehhccC-C-CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            3  8999999999998 5 456678999999999999999998743

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.30  E-value=4e-12  Score=113.42  Aligned_cols=102  Identities=14%  Similarity=0.085  Sum_probs=79.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      +..+|||+|||+|..+..++.. + ..+|+|+|+|+.+++.|+++++..+...+++++++|+...     ++...+ ||+
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~-fD~  129 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI-----AAGQRD-IDI  129 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH-----HTTCCS-EEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH-----hccCCC-CCE
Confidence            5679999999999888777665 2 5799999999999999999987655444689999987431     111235 999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |++....       .....+++++.++|||||++++.
T Consensus       130 v~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          130 LFMDCDV-------FNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             EEEETTT-------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEcCCh-------hhhHHHHHHHHHhcCCCeEEEEE
Confidence            9886422       23567899999999999999986

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.30  E-value=2.5e-11  Score=113.88  Aligned_cols=111  Identities=15%  Similarity=0.033  Sum_probs=80.7

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeC-ChHHHHHHHHHhH-----hcCCC----ceeEEEEcCCCCCchhhhh
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDV-ATSGIGEARDTWE-----NQRKN----FIAEFFEADPCAENFETQM   99 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDi-S~~~l~~A~~r~~-----~~~~~----~~v~f~~~D~~~~~~~~~l   99 (357)
                      .++.+|||||||+|..+..++..+..+|+|+|+ |+.+++.|+++..     ..+..    .++.+...|.....- ...
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~  156 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPD-SLQ  156 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTH-HHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccH-HHH
Confidence            367899999999998887777766669999999 8999999999883     32221    257777776554211 111


Q ss_pred             hh-cCCcccEEEEccchhhccCCHHHHHHHHHHHHhccc---C--CcEEEEE
Q 018352          100 QE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLK---P--GGYFLGI  145 (357)
Q Consensus       100 ~~-~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~Lk---p--GG~fi~t  145 (357)
                      .. ..++||+|++..++++    ......+++.+.++|+   |  ||++++.
T Consensus       157 ~~~~~~~fD~Ii~~dvl~~----~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          157 RCTGLQRFQVVLLADLLSF----HQAHDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             HHHSCSSBSEEEEESCCSC----GGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             hhccCCCCCEEEEeCcccC----hHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence            00 2478999999887666    3457789999999999   9  9987765

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.30  E-value=5.3e-12  Score=109.52  Aligned_cols=99  Identities=12%  Similarity=0.123  Sum_probs=75.7

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++...  +++|+|+|+.|++.      .    .+++++++|+.. .+      .+++||+|
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~----~~~~~~~~d~~~-~~------~~~~fD~i   82 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------H----RGGNLVRADLLC-SI------NQESVDVV   82 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------C----SSSCEEECSTTT-TB------CGGGCSEE
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------c----cCCeEEECChhh-hc------ccCCCCEE
Confidence            456799999999998777776555  99999999999987      2    267899999876 33      34789999


Q ss_pred             EEccchhhccCCH------HHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCFQHLQMCFETE------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~~~lh~~fes~------~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +|+..+|.. ...      .+...+++++.+.| |||++++..+..
T Consensus        83 ~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~  126 (170)
T 3q87_B           83 VFNPPYVPD-TDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA  126 (170)
T ss_dssp             EECCCCBTT-CCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG
T ss_pred             EECCCCccC-CccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC
Confidence            999887752 111      12345778888888 999999886543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.30  E-value=2.3e-11  Score=111.20  Aligned_cols=121  Identities=9%  Similarity=-0.098  Sum_probs=93.6

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      .+..+++++.+|||||||+|..+..++..+ ..+++|+|+++.+++.|+++.+.++...++++.++|......      +
T Consensus        14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~------~   87 (230)
T 3lec_A           14 KVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE------E   87 (230)
T ss_dssp             HHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC------G
T ss_pred             HHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc------c
Confidence            356788899999999999998888777764 568999999999999999999887766679999999865322      2


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc-hHHHHHH
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS-STIWAKY  156 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~-~~i~~~~  156 (357)
                      ..+||+|++..    +  .-+-...++....+.|+++|+|+...... +.+.+.+
T Consensus        88 ~~~~D~IviaG----m--Gg~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L  136 (230)
T 3lec_A           88 ADNIDTITICG----M--GGRLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWL  136 (230)
T ss_dssp             GGCCCEEEEEE----E--CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHH
T ss_pred             ccccCEEEEeC----C--chHHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHH
Confidence            23799987644    1  22457788999999999999999885444 3443333

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.30  E-value=8.2e-12  Score=119.25  Aligned_cols=112  Identities=18%  Similarity=0.093  Sum_probs=84.4

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|||+|+.+..++..  +..+|+|+|+|+.+++.++++.+..+.. ++.++++|+.....      ..++||
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~------~~~~fD  189 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGE------LNVEFD  189 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGG------GCCCEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccc------ccccCC
Confidence            47789999999999988888775  3469999999999999999998766443 68999999865332      246899


Q ss_pred             EEEEccc------hhhcc-----CCH-------HHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          108 LVCCFQH------LQMCF-----ETE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       108 lV~~~~~------lh~~f-----es~-------~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +|++...      ++..-     -+.       ....++|+++.++|||||+++.+++.
T Consensus       190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            9998421      21100     011       12368999999999999999987654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.29  E-value=1.3e-11  Score=112.45  Aligned_cols=107  Identities=15%  Similarity=0.139  Sum_probs=82.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-------
Q 018352           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-------  101 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-------  101 (357)
                      ++.+|||||||+|..+..++...  ..+|+|+|+++.+++.|+++++..+...++.++++|+... + ..+..       
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~-~~~~~~~~~~~~  137 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALET-L-QVLIDSKSAPSW  137 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH-H-HHHHHCSSCCGG
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHH-H-HHHHhhcccccc
Confidence            57899999999998888887763  5799999999999999999987665444689999987431 1 11110       


Q ss_pred             ----c-C-CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          102 ----K-A-NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       102 ----~-~-~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                          . . ++||+|++.....       ....+++++.++|+|||++++..
T Consensus       138 ~~~f~~~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDADKE-------NYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cccccCCCCCcCEEEEeCCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence                1 2 6899999876433       24578999999999999999875

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.29  E-value=4.6e-12  Score=118.45  Aligned_cols=116  Identities=10%  Similarity=0.016  Sum_probs=84.7

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|||+|+.+..++..  +..+|+|+|+|+.+++.++++.+..+.. ++.++++|+.....  .+....++||
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~--~~~~~~~~fD  158 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKD--YLLKNEIFFD  158 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHH--HHHHTTCCEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcch--hhhhccccCC
Confidence            46789999999999998888774  4479999999999999999998776543 78999999754221  1111246899


Q ss_pred             EEEEccchhh--ccC-----C-------HHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          108 LVCCFQHLQM--CFE-----T-------EERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       108 lV~~~~~lh~--~fe-----s-------~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +|++......  .+.     +       .....++++++.++|||||+++.++++
T Consensus       159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs  213 (274)
T 3ajd_A          159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS  213 (274)
T ss_dssp             EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            9998632111  000     0       023468899999999999999988654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.28  E-value=1.5e-12  Score=119.77  Aligned_cols=106  Identities=12%  Similarity=0.038  Sum_probs=82.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~~F  106 (357)
                      +..+|||||||+|..+..++..  ...+|+|+|+|+.+++.|+++++..+...+++++++|+...  ...+..  ..++|
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~--l~~~~~~~~~~~f  137 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDT--LHSLLNEGGEHQF  137 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHH--HHHHHHHHCSSCE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--HHHHhhccCCCCE
Confidence            4679999999999888888775  35799999999999999999998766555799999997542  111110  14789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|++....       .....+++++.++|||||++++.
T Consensus       138 D~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          138 DFIFIDADK-------TNYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             EEEEEESCG-------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEcCCh-------HHhHHHHHHHHHhcCCCeEEEEE
Confidence            999886532       23556899999999999999986

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.28  E-value=3.9e-12  Score=113.54  Aligned_cols=88  Identities=18%  Similarity=0.200  Sum_probs=71.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..+    ..+++|+|+|+.                ++.+.++|+...++      .+++||+|
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~----------------~~~~~~~d~~~~~~------~~~~fD~v  119 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSI----RNPVHCFDLASL----------------DPRVTVCDMAQVPL------EDESVDVA  119 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHC----CSCEEEEESSCS----------------STTEEESCTTSCSC------CTTCEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHh----hccEEEEeCCCC----------------CceEEEeccccCCC------CCCCEeEE
Confidence            46789999999999776655    268999999987                34678899877655      46789999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +|..++|+     .+...+++++.++|+|||+++++.+.
T Consensus       120 ~~~~~l~~-----~~~~~~l~~~~~~L~~gG~l~i~~~~  153 (215)
T 2zfu_A          120 VFCLSLMG-----TNIRDFLEEANRVLKPGGLLKVAEVS  153 (215)
T ss_dssp             EEESCCCS-----SCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             EEehhccc-----cCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence            99998885     24678899999999999999988543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.28  E-value=3.1e-11  Score=111.30  Aligned_cols=122  Identities=9%  Similarity=-0.077  Sum_probs=94.1

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      .+..+++++.+|||||||+|..+..++..+ ..+++|+|+++.+++.|+++.+.++...++++..+|......      +
T Consensus        14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~------~   87 (244)
T 3gnl_A           14 KVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE------K   87 (244)
T ss_dssp             HHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC------G
T ss_pred             HHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC------c
Confidence            466788899999999999998887777764 458999999999999999999887766679999999865322      2


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc-hHHHHHHH
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS-STIWAKYQ  157 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~-~~i~~~~~  157 (357)
                      ..+||+|++..    +  ..+-...++....+.|+++|+|++..... +.+.+.+.
T Consensus        88 ~~~~D~Iviag----m--Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~  137 (244)
T 3gnl_A           88 KDAIDTIVIAG----M--GGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSE  137 (244)
T ss_dssp             GGCCCEEEEEE----E--CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHH
T ss_pred             cccccEEEEeC----C--chHHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHH
Confidence            23599987644    1  23457778999999999999999885444 44444443

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.28  E-value=2.9e-11  Score=110.21  Aligned_cols=121  Identities=12%  Similarity=0.002  Sum_probs=92.7

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      .+..+++++.+|||||||+|..+..++..+ ..+|+|+|+++.+++.|+++.+.++...++++..+|.... +    . .
T Consensus         8 ~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~-l----~-~   81 (225)
T 3kr9_A            8 LVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA-F----E-E   81 (225)
T ss_dssp             HHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-C----C-G
T ss_pred             HHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh-c----c-c
Confidence            356778889999999999998888877764 5689999999999999999998877666799999998542 2    0 1


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc-hHHHHHH
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS-STIWAKY  156 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~-~~i~~~~  156 (357)
                      ..+||+|++...      .-+....++..+.+.|+++|+|++..... +.+.+.+
T Consensus        82 ~~~~D~IviaG~------Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L  130 (225)
T 3kr9_A           82 TDQVSVITIAGM------GGRLIARILEEGLGKLANVERLILQPNNREDDLRIWL  130 (225)
T ss_dssp             GGCCCEEEEEEE------CHHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHH
T ss_pred             CcCCCEEEEcCC------ChHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence            126998876541      22346788999999999999999875444 3444433

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.27  E-value=1.5e-11  Score=114.62  Aligned_cols=108  Identities=13%  Similarity=0.054  Sum_probs=86.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..++.+|||+|||+|..+..++.. + ..+++++|+|+.+++.|+++.+..+...++.++.+|+... +      +.++|
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~------~~~~~  182 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-F------DEKDV  182 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-C------SCCSE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-c------cCCcc
Confidence            347889999999999888888776 3 5799999999999999999987654434789999998654 3      34689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      |+|++...         ....+++++.++|+|||++++.++..+.+
T Consensus       183 D~V~~~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (277)
T 1o54_A          183 DALFLDVP---------DPWNYIDKCWEALKGGGRFATVCPTTNQV  219 (277)
T ss_dssp             EEEEECCS---------CGGGTHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred             CEEEECCc---------CHHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence            99998431         23467999999999999999999876443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.27  E-value=6.4e-11  Score=104.91  Aligned_cols=105  Identities=14%  Similarity=0.069  Sum_probs=82.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++.+..+.  +++++++|+..  +       +.+||+|
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~--~-------~~~~D~v  116 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSE--F-------NSRVDIV  116 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGG--C-------CCCCSEE
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHH--c-------CCCCCEE
Confidence            36789999999999988888777666899999999999999999876644  78999999865  2       2489999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ++...+|. .. ......+++.+.++|  ||.++..+++.
T Consensus       117 ~~~~p~~~-~~-~~~~~~~l~~~~~~l--~~~~~~~~~~~  152 (207)
T 1wy7_A          117 IMNPPFGS-QR-KHADRPFLLKAFEIS--DVVYSIHLAKP  152 (207)
T ss_dssp             EECCCCSS-SS-TTTTHHHHHHHHHHC--SEEEEEEECCH
T ss_pred             EEcCCCcc-cc-CCchHHHHHHHHHhc--CcEEEEEeCCc
Confidence            99988776 32 123456788888888  67666654444

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.27  E-value=8.7e-12  Score=118.50  Aligned_cols=113  Identities=14%  Similarity=0.040  Sum_probs=82.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHh---cCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN---QRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~---~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +++.+|||||||+|..+..+++. +..+|+++|+|+.+++.|++++..   .....+++++.+|+.....    ....++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~----~~~~~~  169 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVR----QTPDNT  169 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH----SSCTTC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHH----hccCCc
Confidence            46689999999999988888766 457999999999999999998742   1112368999999754221    002578


Q ss_pred             ccEEEEccchhhccCCHHHH--HHHHHHHHhcccCCcEEEEEeCC
Q 018352          106 ADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~--~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ||+|++....+. . .....  ..+++++.++|||||++++...+
T Consensus       170 fDvIi~d~~~~~-~-~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  212 (304)
T 3bwc_A          170 YDVVIIDTTDPA-G-PASKLFGEAFYKDVLRILKPDGICCNQGES  212 (304)
T ss_dssp             EEEEEEECC-----------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             eeEEEECCCCcc-c-cchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            999999765544 1 11112  68899999999999999998655

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.27  E-value=2.3e-11  Score=118.49  Aligned_cols=98  Identities=18%  Similarity=0.147  Sum_probs=80.7

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .+..+|||||||+|..+..+++. +..+++++|+ +.+++.|+++       .+++|+.+|+.. ++      +.+  |+
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~------p~~--D~  264 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GV------PKG--DA  264 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC------CCC--SE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CC------CCC--CE
Confidence            35689999999999988888776 4568999999 8888776532       268999999876 44      323  99


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |++..++|+ + +.++..++|++++++|||||++++..
T Consensus       265 v~~~~vlh~-~-~~~~~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          265 IFIKWICHD-W-SDEHCLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             EEEESCGGG-B-CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEechhhc-C-CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            999999998 5 56678899999999999999999873

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.26  E-value=1.6e-11  Score=107.71  Aligned_cols=110  Identities=20%  Similarity=0.106  Sum_probs=77.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cC---------CeEEEEeCChHHHHHHHHHhHhcCCCceeEEE-EcCCCCCchhh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LI---------ANYIGIDVATSGIGEARDTWENQRKNFIAEFF-EADPCAENFET   97 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~---------~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~-~~D~~~~~~~~   97 (357)
                      +.++.+|||+|||+|..+..+++. +.         .+++|+|+|+.+         .   ..++.++ .+|+.......
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~---~~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P---LEGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C---CTTCEEECSCCTTSHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c---CCCCeEEEeccCCCHHHHH
Confidence            567899999999999888888776 43         689999999842         0   1257888 89886643221


Q ss_pred             hhh--hcCCcccEEEEccchhhccCCHHHH-------HHHHHHHHhcccCCcEEEEEeCCch
Q 018352           98 QMQ--EKANQADLVCCFQHLQMCFETEERA-------RRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus        98 ~l~--~~~~~FDlV~~~~~lh~~fes~~~~-------~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      .+.  ...++||+|+|..++|+......+.       ..+++++.++|||||.|++.+....
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  149 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS  149 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred             HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            110  0235899999977655432111122       5789999999999999999876653

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.26  E-value=2.8e-11  Score=118.14  Aligned_cols=120  Identities=13%  Similarity=0.057  Sum_probs=91.6

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcC-CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~-~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ..++.+|||+|||+|..+..++.... .+++|+|+|+.|++.|+++.+..+...+++|.++|+...+.      ..++||
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~------~~~~fD  288 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ------YVDSVD  288 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG------TCSCEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc------ccCCcC
Confidence            56788999999999998888877643 48999999999999999999877654578999999877554      457899


Q ss_pred             EEEEccchhhccC---CH-HHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352          108 LVCCFQHLQMCFE---TE-ERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus       108 lV~~~~~lh~~fe---s~-~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                      +|+|+..++.-..   .. +-...+++.+.++|  ||.+++.+++...+.+.+
T Consensus       289 ~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~~~~~  339 (373)
T 3tm4_A          289 FAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKAIEEAI  339 (373)
T ss_dssp             EEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHHHHHHH
T ss_pred             EEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHH
Confidence            9999765443221   12 22377899999988  777777788876665544

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.26  E-value=3e-11  Score=117.51  Aligned_cols=103  Identities=18%  Similarity=0.194  Sum_probs=83.5

Q ss_pred             HHHHc--CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh
Q 018352           24 LIKIY--SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (357)
Q Consensus        24 Li~~~--~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~  100 (357)
                      ++..+  ..+..+|||||||+|..+..+++. +..+++++|+ +.+++.|+++       .+++|+.+|+.. ++     
T Consensus       192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~-----  257 (364)
T 3p9c_A          192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EV-----  257 (364)
T ss_dssp             HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC-----
T ss_pred             HHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CC-----
Confidence            44444  345789999999999988888776 4568999999 8888776532       269999999976 54     


Q ss_pred             hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                       +.+  |+|++..++|+ + +.++..++|++++++|||||++++.
T Consensus       258 -p~~--D~v~~~~vlh~-~-~d~~~~~~L~~~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          258 -PSG--DTILMKWILHD-W-SDQHCATLLKNCYDALPAHGKVVLV  297 (364)
T ss_dssp             -CCC--SEEEEESCGGG-S-CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             -CCC--CEEEehHHhcc-C-CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence             333  99999999998 5 5677889999999999999999987

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.26  E-value=4.1e-12  Score=120.15  Aligned_cols=99  Identities=10%  Similarity=-0.009  Sum_probs=72.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEE-EEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEF-FEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f-~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ++.+|||+|||+|+++..+++.+..+|+|+|+|+.||+.+.++..      ++.. ...|+...... .+  +..+||+|
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~------rv~~~~~~ni~~l~~~-~l--~~~~fD~v  155 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDD------RVRSMEQYNFRYAEPV-DF--TEGLPSFA  155 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCT------TEEEECSCCGGGCCGG-GC--TTCCCSEE
T ss_pred             cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------ccceecccCceecchh-hC--CCCCCCEE
Confidence            577999999999999988888877899999999999998544211      2222 22333222211 11  23459999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|..++|+       ...+|.+++++|||||.+++.
T Consensus       156 ~~d~sf~s-------l~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          156 SIDVSFIS-------LNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             EECCSSSC-------GGGTHHHHHHHSCTTCEEEEE
T ss_pred             EEEeeHhh-------HHHHHHHHHHHcCcCCEEEEE
Confidence            99887775       267899999999999999887

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.26  E-value=2.7e-11  Score=119.08  Aligned_cols=122  Identities=14%  Similarity=0.096  Sum_probs=91.5

Q ss_pred             HHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCC-CceeEEEEcCCCCCchhhhhhhcC
Q 018352           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-NFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~-~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      +..+ .++.+|||+|||+|+.+..++..+..+|+|+|+|+.+++.|+++++.++. ..+++|+++|+...  ...+....
T Consensus       215 l~~~-~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~--~~~~~~~~  291 (396)
T 3c0k_A          215 TRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL--LRTYRDRG  291 (396)
T ss_dssp             HHHH-CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHH--HHHHHHTT
T ss_pred             HHHh-hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH--HHHHHhcC
Confidence            4444 46789999999999999888887777999999999999999999887755 33789999998552  11121124


Q ss_pred             CcccEEEEccchh-----hccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          104 NQADLVCCFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       104 ~~FDlV~~~~~lh-----~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .+||+|++.....     ..+........++.++.++|+|||++++++...
T Consensus       292 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             CCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            6899999864221     112223557788999999999999999886543

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.26  E-value=2.1e-11  Score=118.66  Aligned_cols=104  Identities=19%  Similarity=0.240  Sum_probs=83.7

Q ss_pred             HHHHHc--CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh
Q 018352           23 ALIKIY--SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (357)
Q Consensus        23 ~Li~~~--~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l   99 (357)
                      .++..+  ..+..+|||||||+|..+..++.. +..+++++|+ +.+++.|++.       .+++|+.+|+.. ++    
T Consensus       199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~----  265 (372)
T 1fp1_D          199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFA-SV----  265 (372)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC----
T ss_pred             HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCccc-CC----
Confidence            345554  346789999999999988888776 3458999999 9999877542       258999999976 44    


Q ss_pred             hhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                        + . ||+|++..++|+ + +.....++|++++++|||||++++.
T Consensus       266 --~-~-~D~v~~~~~lh~-~-~d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          266 --P-Q-GDAMILKAVCHN-W-SDEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             --C-C-EEEEEEESSGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --C-C-CCEEEEeccccc-C-CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence              2 2 999999999998 5 4555679999999999999999987

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.25  E-value=2.6e-11  Score=111.72  Aligned_cols=106  Identities=10%  Similarity=0.035  Sum_probs=82.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh---cCCc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ  105 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~---~~~~  105 (357)
                      +..+|||||||+|..+..++.. + ..+|+++|+|+.+++.|+++++..+...+++++++|+...  ...+..   ..++
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~--l~~l~~~~~~~~~  156 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV--LDEMIKDEKNHGS  156 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH--HHHHHHSGGGTTC
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH--HHHHHhccCCCCC
Confidence            4679999999999888887776 2 5799999999999999999988765555799999997541  111110   1478


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ||+|++....       .....+++++.++|||||++++.
T Consensus       157 fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          157 YDFIFVDADK-------DNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             BSEEEECSCS-------TTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEEEEEcCch-------HHHHHHHHHHHHhCCCCeEEEEe
Confidence            9999986532       23567899999999999999986

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.24  E-value=2.4e-11  Score=113.54  Aligned_cols=104  Identities=15%  Similarity=0.025  Sum_probs=84.4

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      .+.++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++.+.++.. ++.|+++|+... -      ..++|
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~-~------~~~~~  187 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDV-E------LKDVA  187 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGC-C------CTTCE
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHc-C------ccCCc
Confidence            3567889999999999998888776 4569999999999999999998876543 578999998764 1      14689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |+|++....        ....++..+.+.|+|||+++++..
T Consensus       188 D~Vi~d~p~--------~~~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          188 DRVIMGYVH--------KTHKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             EEEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEECCcc--------cHHHHHHHHHHHcCCCCEEEEEEc
Confidence            999987643        244578899999999999997743

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.24  E-value=2.3e-11  Score=119.77  Aligned_cols=120  Identities=11%  Similarity=0.024  Sum_probs=87.7

Q ss_pred             HHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh
Q 018352           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (357)
Q Consensus        22 s~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~  101 (357)
                      ..++..++.++.+|||+|||+|+.+..++..+. .|+|+|+|+.+++.|+++.+.++..  ..+.++|+...     +..
T Consensus       205 r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~--~~~~~~D~~~~-----l~~  276 (393)
T 4dmg_A          205 RRLFEAMVRPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLR--VDIRHGEALPT-----LRG  276 (393)
T ss_dssp             HHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCHHHH-----HHT
T ss_pred             HHHHHHHhcCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCC--CcEEEccHHHH-----HHH
Confidence            445666777789999999999999988887766 4999999999999999998877543  35668887541     111


Q ss_pred             cCCcccEEEEccch-h----hccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          102 KANQADLVCCFQHL-Q----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       102 ~~~~FDlV~~~~~l-h----~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ..+.||+|++.... +    ..+........++..+.++|+|||+++..+.+.
T Consensus       277 ~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~  329 (393)
T 4dmg_A          277 LEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY  329 (393)
T ss_dssp             CCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             hcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            12449999986432 1    001113455789999999999999999775544

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.24  E-value=3.5e-11  Score=109.51  Aligned_cols=107  Identities=14%  Similarity=0.053  Sum_probs=81.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC--Ccc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA--NQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~--~~F  106 (357)
                      ++.+|||+|||+|..+..++.. + ..+|+++|+|+.+++.|+++++..+...+++++++|+..  ....+...+  ++|
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~--~l~~l~~~~~~~~f  149 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA--TLEQLTQGKPLPEF  149 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH--HHHHHHTSSSCCCE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHHHHhcCCCCCc
Confidence            4679999999999888777665 2 469999999999999999998766554478999998743  111121122  789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|++....       .....+++++.++|+|||++++..
T Consensus       150 D~V~~d~~~-------~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          150 DLIFIDADK-------RNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             EEEEECSCG-------GGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             CEEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEeC
Confidence            999986532       235678999999999999999873

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.24  E-value=2.5e-11  Score=114.30  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=78.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|+++....+...+++++++|+...++        .+||+
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~--------~~fD~   96 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL--------PFFDT   96 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--------CCCSE
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc--------hhhcE
Confidence            3467899999999999988887765 49999999999999999988654333478999999987554        37999


Q ss_pred             EEEccchhhccCCHHHHHHHHH--------------HH--HhcccCCcEEEE
Q 018352          109 VCCFQHLQMCFETEERARRLLQ--------------NV--SSLLKPGGYFLG  144 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~--------------~i--~~~LkpGG~fi~  144 (357)
                      |+++..+|+   +.+....++.              ++  +++|+|||.+++
T Consensus        97 vv~nlpy~~---~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~  145 (285)
T 1zq9_A           97 CVANLPYQI---SSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC  145 (285)
T ss_dssp             EEEECCGGG---HHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred             EEEecCccc---chHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence            999877766   2233333332              23  358999998753

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.24  E-value=2.8e-11  Score=107.30  Aligned_cols=108  Identities=14%  Similarity=0.105  Sum_probs=76.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--c---C
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--K---A  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~---~  103 (357)
                      ..++.+|||||||+|+.+..+++. ..+|+|+|+++..            ...++.|+++|+........+..  .   .
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~------------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~   89 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME------------EIAGVRFIRCDIFKETIFDDIDRALREEGI   89 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC------------CCTTCEEEECCTTSSSHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc------------cCCCeEEEEccccCHHHHHHHHHHhhcccC
Confidence            467899999999999888877666 6699999999742            11268999999988654322211  1   1


Q ss_pred             CcccEEEEccchhhc----c---CCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          104 NQADLVCCFQHLQMC----F---ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~----f---es~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ++||+|+|.......    .   .+.+....+++.+.++|||||.|++.+...
T Consensus        90 ~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~  142 (191)
T 3dou_A           90 EKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG  142 (191)
T ss_dssp             SSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             CcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence            489999996532211    1   112334678999999999999999876544

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.23  E-value=1.1e-11  Score=113.37  Aligned_cols=101  Identities=15%  Similarity=0.111  Sum_probs=76.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-----cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-----~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      ++.+|||||||+|..+..++..     +..+|+|+|+|+.|++.|+.    .  ..+++++++|+........+  ...+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~--~~~v~~~~gD~~~~~~l~~~--~~~~  152 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----D--MENITLHQGDCSDLTTFEHL--REMA  152 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----G--CTTEEEEECCSSCSGGGGGG--SSSC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----c--CCceEEEECcchhHHHHHhh--ccCC
Confidence            4579999999999888887765     35799999999999998862    1  13699999999764211111  2247


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHh-cccCCcEEEEEe
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSS-LLKPGGYFLGIT  146 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~-~LkpGG~fi~t~  146 (357)
                      ||+|++..+ |.      +...++.++.+ +|||||++++..
T Consensus       153 fD~I~~d~~-~~------~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          153 HPLIFIDNA-HA------NTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             SSEEEEESS-CS------SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             CCEEEECCc-hH------hHHHHHHHHHHhhCCCCCEEEEEe
Confidence            999988654 32      35678999997 999999999864

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.23  E-value=1.7e-11  Score=112.55  Aligned_cols=114  Identities=10%  Similarity=0.033  Sum_probs=76.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc-CCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~-~~~FDl  108 (357)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++.+..+...+++|+++|+...-+ ..+... +++||+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLM-DALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSST-TTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhh-hhhhcccCCcccE
Confidence            4679999999999877777665 3569999999999999999998876554469999999765211 011101 258999


Q ss_pred             EEEccchhhccCC-----------HHHHHHHHHHHHhcccCCcEEEEE
Q 018352          109 VCCFQHLQMCFET-----------EERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       109 V~~~~~lh~~fes-----------~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|+..+|..-..           .+....++.+++++|||||.+.+.
T Consensus       144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             EEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            9998655541100           011235678899999999987654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.23  E-value=3.5e-11  Score=108.34  Aligned_cols=106  Identities=13%  Similarity=0.113  Sum_probs=81.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC--Ccc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA--NQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~--~~F  106 (357)
                      ++.+|||+|||+|..+..++.. + ..+|+++|+|+.+++.|+++++..+...+++++++|+...  ...+....  ++|
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~--~~~~~~~~~~~~~  146 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET--LDELLAAGEAGTF  146 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH--HHHHHHTTCTTCE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH--HHHHHhcCCCCCc
Confidence            5689999999999888877765 2 5799999999999999999987765545799999987431  11121111  689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|++....       .....+++++.++|+|||++++.
T Consensus       147 D~v~~d~~~-------~~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          147 DVAVVDADK-------ENCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             EEEEECSCS-------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEE
Confidence            999986532       23457899999999999999986

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.22  E-value=8.6e-11  Score=113.80  Aligned_cols=103  Identities=23%  Similarity=0.297  Sum_probs=85.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ...+|||||||+|..+..+++. +..+++..|. +.+++.|+++..... ..+++|+.+|.+..+.        ..+|+|
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~--------~~~D~~  248 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL--------PEADLY  248 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC--------CCCSEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCC--------CCceEE
Confidence            4679999999999999888876 5558889997 789999998875432 3479999999876543        458999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ++..++|+ + +.++..++|+++++.|+|||++++.
T Consensus       249 ~~~~vlh~-~-~d~~~~~iL~~~~~al~pgg~lli~  282 (353)
T 4a6d_A          249 ILARVLHD-W-ADGKCSHLLERIYHTCKPGGGILVI  282 (353)
T ss_dssp             EEESSGGG-S-CHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             Eeeeeccc-C-CHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            99999998 6 5677889999999999999999987

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.22  E-value=5.7e-11  Score=108.56  Aligned_cols=107  Identities=10%  Similarity=-0.001  Sum_probs=83.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh---cCCc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ  105 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~---~~~~  105 (357)
                      +..+|||||||+|..+..++.. + ..+++++|+|+.+++.|+++++..+...+++++++|+...  ...+..   ..++
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~--l~~l~~~~~~~~~  147 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA--LDNLLQGQESEGS  147 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH--HHHHHHSTTCTTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--HHHHHhccCCCCC
Confidence            4679999999999888888776 3 5799999999999999999988765555799999997541  111111   1478


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ||+|++....       .....+++++.++|+|||++++..
T Consensus       148 fD~I~~d~~~-------~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          148 YDFGFVDADK-------PNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCEEEECCch-------HHHHHHHHHHHHhcCCCeEEEEec
Confidence            9999886422       235678999999999999999873

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.21  E-value=6.9e-12  Score=117.12  Aligned_cols=112  Identities=15%  Similarity=0.076  Sum_probs=76.4

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHh-HhcCCCceeEEE--EcCCCCCchhhhhhhcC
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW-ENQRKNFIAEFF--EADPCAENFETQMQEKA  103 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~-~~~~~~~~v~f~--~~D~~~~~~~~~l~~~~  103 (357)
                      .++.++.+|||||||+|+.+..++..  .+|+|+|+|+ |+..++++. .......++.|+  ++|+..  +      ++
T Consensus        70 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~--l------~~  138 (265)
T 2oxt_A           70 GYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHT--L------PV  138 (265)
T ss_dssp             TSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTT--S------CC
T ss_pred             CCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhH--C------CC
Confidence            34567889999999999888777665  6999999998 543332211 001111267888  899876  3      34


Q ss_pred             CcccEEEEccchhhccCC-HHHH--HHHHHHHHhcccCCc--EEEEEe--CCch
Q 018352          104 NQADLVCCFQHLQMCFET-EERA--RRLLQNVSSLLKPGG--YFLGIT--PDSS  150 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes-~~~~--~~~L~~i~~~LkpGG--~fi~t~--pd~~  150 (357)
                      ++||+|+|..+ ++.-.. .+..  ..+|+.+.++|||||  .|++.+  |...
T Consensus       139 ~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~  191 (265)
T 2oxt_A          139 ERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSV  191 (265)
T ss_dssp             CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSH
T ss_pred             CCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCCh
Confidence            78999999877 442111 1112  138899999999999  999876  4444

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.21  E-value=3.6e-11  Score=115.98  Aligned_cols=98  Identities=15%  Similarity=0.128  Sum_probs=81.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .+..+|||||||+|..+..+++. +..+++|+|+ +.+++.|++.       .+++|+.+|+.. ++      +  .||+
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~------p--~~D~  249 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFT-SI------P--NADA  249 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTT-CC------C--CCSE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccC-CC------C--CccE
Confidence            45689999999999988888776 4568999999 9999877641       148999999876 44      2  3999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccC---CcEEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKP---GGYFLGIT  146 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~Lkp---GG~fi~t~  146 (357)
                      |++..++|+ + +..+..++|++++++|||   ||++++..
T Consensus       250 v~~~~~lh~-~-~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          250 VLLKYILHN-W-TDKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             EEEESCGGG-S-CHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             EEeehhhcc-C-CHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            999999998 5 455567999999999999   99999874

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.20  E-value=2.9e-11  Score=110.69  Aligned_cols=100  Identities=11%  Similarity=0.020  Sum_probs=68.1

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEE-EcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFF-EADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~-~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ++.+|||||||+|..+..+++.+..+|+|+|+|+.||+.|+++....      ... ..++...... .+  ....||.+
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~------~~~~~~~~~~~~~~-~~--~~~~~d~~  107 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERV------VVMEQFNFRNAVLA-DF--EQGRPSFT  107 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTE------EEECSCCGGGCCGG-GC--CSCCCSEE
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccc------cccccceEEEeCHh-Hc--CcCCCCEE
Confidence            46799999999999998888887679999999999999987654321      111 1111111100 00  11236666


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ++..++..       ...++++++++|||||+|++.+
T Consensus       108 ~~D~v~~~-------l~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          108 SIDVSFIS-------LDLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             EECCSSSC-------GGGTHHHHHHHSCTTCEEEEEE
T ss_pred             EEEEEhhh-------HHHHHHHHHHhccCCCEEEEEE
Confidence            66554433       1578999999999999999875

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.20  E-value=1.9e-11  Score=115.73  Aligned_cols=113  Identities=18%  Similarity=0.047  Sum_probs=81.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHh--cCC-CceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN--QRK-NFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~--~~~-~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +.+.+|||||||+|..+..+++. +..+|+++|+|+.+++.|++++..  ... ..+++++.+|+...     +....++
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-----l~~~~~~  163 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-----VRKFKNE  163 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-----GGGCSSC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-----HhhCCCC
Confidence            45689999999999888888776 567999999999999999998753  111 23689999997431     1113478


Q ss_pred             ccEEEEccchhhccCCHH--HHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          106 ADLVCCFQHLQMCFETEE--RARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~--~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ||+|++....++ .....  ....+++++.++|+|||++++.+.+
T Consensus       164 fD~Ii~d~~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          164 FDVIIIDSTDPT-AGQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             EEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ceEEEEcCCCcc-cCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            999998653331 11111  1267899999999999999998654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.20  E-value=4.8e-11  Score=125.64  Aligned_cols=113  Identities=15%  Similarity=0.118  Sum_probs=89.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ++.+|||+|||+|+.+..++..+..+|+++|+|+.+++.|+++++.++.. .+++|+++|+...     +....++||+|
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~-----l~~~~~~fD~I  613 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAW-----LREANEQFDLI  613 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHH-----HHHCCCCEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH-----HHhcCCCccEE
Confidence            57899999999999988888777778999999999999999999877654 4699999998551     11135789999


Q ss_pred             EEccchh-------hccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          110 CCFQHLQ-------MCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       110 ~~~~~lh-------~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ++.....       ..+........+++.+.++|+|||++++.+..
T Consensus       614 i~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          614 FIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             EECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            9854210       01333567788999999999999999987655

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.20  E-value=8e-11  Score=113.44  Aligned_cols=109  Identities=23%  Similarity=0.273  Sum_probs=86.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcC------CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALI------ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~------~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      ++.+|||+|||+|+.+..++....      .+++|+|+++.+++.|+.+....+.  ++.+.++|.....       ...
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~-------~~~  200 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-------LVD  200 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-------CCC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc-------ccC
Confidence            567999999999998887766521      5899999999999999998765543  6789999986632       247


Q ss_pred             cccEEEEccchhhccCCHHHH---------------HHHHHHHHhcccCCcEEEEEeCCc
Q 018352          105 QADLVCCFQHLQMCFETEERA---------------RRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~---------------~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +||+|+++..++| +...+..               ..+++.+.+.|+|||++++.+|++
T Consensus       201 ~fD~Ii~NPPfg~-~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          201 PVDVVISDLPVGY-YPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             CEEEEEEECCCSE-ESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             CccEEEECCCCCC-cCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            8999999988776 4333221               368999999999999999998664

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.20  E-value=3.3e-11  Score=117.97  Aligned_cols=120  Identities=13%  Similarity=0.100  Sum_probs=89.5

Q ss_pred             HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 018352           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      ++..+  ++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|+++.+.++.. +++|+++|+...  ...+....
T Consensus       204 ~~~~~--~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~--~~~~~~~~  277 (382)
T 1wxx_A          204 YMERF--RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDL--LRRLEKEG  277 (382)
T ss_dssp             HGGGC--CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHH--HHHHHHTT
T ss_pred             HHHhc--CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHH--HHHHHhcC
Confidence            44454  6789999999999988888777 669999999999999999998876543 389999997542  11111125


Q ss_pred             CcccEEEEccchh-----hccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          104 NQADLVCCFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       104 ~~FDlV~~~~~lh-----~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .+||+|++.....     ..+........++.++.++|+|||++++++...
T Consensus       278 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          278 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  328 (382)
T ss_dssp             CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            7899999854211     111123556789999999999999999886654

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.19  E-value=6.2e-12  Score=108.93  Aligned_cols=93  Identities=11%  Similarity=0.058  Sum_probs=73.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++++.+|||+|||.               +++|+|+.|++.|+++...     +++|.++|+...++.   ...+++||+
T Consensus        10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~---~~~~~~fD~   66 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQS---AHKESSFDI   66 (176)
T ss_dssp             CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGG---CCCSSCEEE
T ss_pred             CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccc---cCCCCCEeE
Confidence            56889999999996               2499999999999998743     378899998764431   003578999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |+|.+++||+-.+   ..+++++++++|||||+|++..|
T Consensus        67 V~~~~~l~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           67 ILSGLVPGSTTLH---SAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             EEECCSTTCCCCC---CHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEECChhhhcccC---HHHHHHHHHHHCCCCEEEEEEcc
Confidence            9999999993133   46789999999999999998533

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.19  E-value=1.6e-11  Score=126.25  Aligned_cols=117  Identities=16%  Similarity=0.078  Sum_probs=81.5

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +.+..+.+|||||||.|..+..+++.+. .|+|||+|+.+|+.|+.+....+. .+++|.++|+.+..  ...  .+++|
T Consensus        62 ~~~~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~--~~~--~~~~f  135 (569)
T 4azs_A           62 RALGRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVI--AAL--EEGEF  135 (569)
T ss_dssp             HHHTSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHH--HHC--CTTSC
T ss_pred             hhcCCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHh--hhc--cCCCc
Confidence            3345678999999999977777766665 899999999999999998876532 37899999875421  111  35789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE-eCCchH
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDSST  151 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t-~pd~~~  151 (357)
                      |+|+|..++||+ .+.. ....+..+.+.|+++|..++. +..++.
T Consensus       136 D~v~~~e~~ehv-~~~~-~~~~~~~~~~tl~~~~~~~~~~~~~~e~  179 (569)
T 4azs_A          136 DLAIGLSVFHHI-VHLH-GIDEVKRLLSRLADVTQAVILELAVKEE  179 (569)
T ss_dssp             SEEEEESCHHHH-HHHH-CHHHHHHHHHHHHHHSSEEEEECCCTTS
T ss_pred             cEEEECcchhcC-CCHH-HHHHHHHHHHHhccccceeeEEeccccc
Confidence            999999999983 2222 122344566677777755444 444333

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.19  E-value=2.2e-11  Score=114.41  Aligned_cols=108  Identities=14%  Similarity=0.100  Sum_probs=81.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc--C--------CCceeEEEEcCCCCCchhhhh
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--R--------KNFIAEFFEADPCAENFETQM   99 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~--~--------~~~~v~f~~~D~~~~~~~~~l   99 (357)
                      +.+.+|||||||+|..+..+++.+..+++++|+++.+++.|++++ ..  .        ...+++++.+|+..  +   +
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~--~---l  147 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFE--F---I  147 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHH--H---H
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHH--H---h
Confidence            456899999999998888887776679999999999999999987 22  1        12368999998743  1   1


Q ss_pred             hhcCCcccEEEEccchhhccCCHHH--HHHHHHHHHhcccCCcEEEEEe
Q 018352          100 QEKANQADLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes~~~--~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      .. .++||+|++....+.  .....  ...+++++.++|+|||++++.+
T Consensus       148 ~~-~~~fD~Ii~d~~~~~--~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          148 KN-NRGFDVIIADSTDPV--GPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             HH-CCCEEEEEEECCCCC-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cc-cCCeeEEEECCCCCC--CcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            11 478999998765432  11122  2678999999999999999874

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.18  E-value=3.7e-11  Score=114.27  Aligned_cols=112  Identities=12%  Similarity=0.025  Sum_probs=80.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHh--cCC-CceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN--QRK-NFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~--~~~-~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +...+|||||||+|..+..+++. +..+++++|+++.+++.|++++..  ... ..+++++.+|+..  +   +....++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~--~---l~~~~~~  168 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE--F---MKQNQDA  168 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH--H---HHTCSSC
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH--H---HhhCCCC
Confidence            45689999999999888888766 457999999999999999998754  111 2368999998743  1   1113578


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ||+|++....+...........+++++.++|+|||++++..
T Consensus       169 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          169 FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            99999876544311001123578999999999999999875

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.18  E-value=3e-11  Score=115.34  Aligned_cols=112  Identities=14%  Similarity=0.064  Sum_probs=83.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc-C--C-CceeEEEEcCCCCCchhhhhhhcCC
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-R--K-NFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~-~--~-~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      +...+|||||||+|..+..+++. +..+++++|+++.+++.|++++... .  . ..+++++.+|+...     +....+
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~-----l~~~~~  150 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-----LERTEE  150 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-----HHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH-----HHhcCC
Confidence            45689999999999888888766 4679999999999999999987541 1  1 23789999997541     111357


Q ss_pred             cccEEEEccchhhccCC-HHH--HHHHHHHHHhcccCCcEEEEEe
Q 018352          105 QADLVCCFQHLQMCFET-EER--ARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes-~~~--~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +||+|++....|..... ...  ...+++++.++|+|||++++..
T Consensus       151 ~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          151 RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             CEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            89999997655441001 111  3678999999999999999874

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.18  E-value=3.3e-11  Score=114.77  Aligned_cols=108  Identities=16%  Similarity=0.058  Sum_probs=74.2

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeC----ChHHHHHHHHHhHhcCCCceeEEEEc-CCCCCchhhhhhhc
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDV----ATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEK  102 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDi----S~~~l~~A~~r~~~~~~~~~v~f~~~-D~~~~~~~~~l~~~  102 (357)
                      ++.++.+|||||||+|+.+..+++.  ++|+|+|+    ++.+++.+.  .+..+ ..++.|+++ |+...+        
T Consensus        79 ~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~--------  145 (305)
T 2p41_A           79 LVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP--------  145 (305)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC--------
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC--------
Confidence            4567889999999999888777665  58999999    565442111  01000 136889988 876532        


Q ss_pred             CCcccEEEEccchh---hccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          103 ANQADLVCCFQHLQ---MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       103 ~~~FDlV~~~~~lh---~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ..+||+|+|..+++   +.. +......+|..+.++|||||.|++.+...
T Consensus       146 ~~~fD~V~sd~~~~~g~~~~-d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          146 PERCDTLLCDIGESSPNPTV-EAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             CCCCSEEEECCCCCCSSHHH-HHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             cCCCCEEEECCccccCcchh-hHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            36899999987653   211 11111258899999999999999987655

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.17  E-value=2.7e-10  Score=111.05  Aligned_cols=105  Identities=9%  Similarity=-0.159  Sum_probs=83.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcC-CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC-CchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~-~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~-~~~~~~l~~~~~~FDl  108 (357)
                      ++.+|||+| |+|..+..++..+. .+++|+|+|+.|++.|+++.+..+.. +++|+++|+.. .+..     ..++||+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~-----~~~~fD~  244 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY-----ALHKFDT  244 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT-----TSSCBSE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh-----ccCCccE
Confidence            578999999 99988888877654 79999999999999999998876554 79999999976 2210     1368999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCc-EEEEEeC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITP  147 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG-~fi~t~p  147 (357)
                      |++...++..     ....+++++.++||||| .+++.+.
T Consensus       245 Vi~~~p~~~~-----~~~~~l~~~~~~LkpgG~~~~~~~~  279 (373)
T 2qm3_A          245 FITDPPETLE-----AIRAFVGRGIATLKGPRCAGYFGIT  279 (373)
T ss_dssp             EEECCCSSHH-----HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred             EEECCCCchH-----HHHHHHHHHHHHcccCCeEEEEEEe
Confidence            9998765541     25889999999999999 4344443

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.17  E-value=2.8e-11  Score=113.42  Aligned_cols=114  Identities=12%  Similarity=0.065  Sum_probs=83.5

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc--CC-CceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~--~~-~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +...+|||||||+|..+..+++. +..+++++|+++.+++.|++.+...  .. ..+++++.+|+..  +   +....++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~--~---l~~~~~~  148 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM--H---IAKSENQ  148 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH--H---HHTCCSC
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHH--H---HhhCCCC
Confidence            45689999999999888887776 5679999999999999999987431  11 2378999999753  1   1113578


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ||+|++....+......-....+++++.++|+|||++++.+.+
T Consensus       149 fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            9999996544321000001256899999999999999998644

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.17  E-value=7.8e-12  Score=117.47  Aligned_cols=109  Identities=19%  Similarity=0.057  Sum_probs=74.8

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhH-hcCCCceeEEE--EcCCCCCchhhhhhhcCC
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE-NQRKNFIAEFF--EADPCAENFETQMQEKAN  104 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~-~~~~~~~v~f~--~~D~~~~~~~~~l~~~~~  104 (357)
                      .+.++.+|||||||+|+.+..++..  .+|+|+|+|+ |+..|+++.. ......++.|+  ++|+..  +      +++
T Consensus        79 ~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~--l------~~~  147 (276)
T 2wa2_A           79 GVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTK--M------EPF  147 (276)
T ss_dssp             SCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG--C------CCC
T ss_pred             CCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhh--C------CCC
Confidence            4457889999999999888777665  6999999998 6443322210 01112267888  888765  2      347


Q ss_pred             cccEEEEccchhhccCC-HHHH--HHHHHHHHhcccCCc--EEEEEeCC
Q 018352          105 QADLVCCFQHLQMCFET-EERA--RRLLQNVSSLLKPGG--YFLGITPD  148 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes-~~~~--~~~L~~i~~~LkpGG--~fi~t~pd  148 (357)
                      +||+|+|..+ ++.-.. .+..  ..+|+.+.++|||||  .|++.+..
T Consensus       148 ~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          148 QADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            8999999877 442111 1112  137899999999999  99887533

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.16  E-value=5.2e-11  Score=113.81  Aligned_cols=111  Identities=9%  Similarity=0.063  Sum_probs=81.1

Q ss_pred             CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ..+|||||||+|..+..+++. +..+++++|+++.+++.|++++... ...+++++++|+..  +....  ..++||+|+
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~-~~~rv~v~~~Da~~--~l~~~--~~~~fDvIi  164 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP-RAPRVKIRVDDARM--VAESF--TPASRDVII  164 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC-CTTTEEEEESCHHH--HHHTC--CTTCEEEEE
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc-CCCceEEEECcHHH--HHhhc--cCCCCCEEE
Confidence            349999999999888888773 5569999999999999999987542 12378999999754  11111  247899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +....+......-....++++++++|+|||+|++...
T Consensus       165 ~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             ECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            8654332110000125789999999999999998754

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.15  E-value=7.1e-11  Score=113.86  Aligned_cols=113  Identities=13%  Similarity=0.058  Sum_probs=81.4

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc--CC-CceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~--~~-~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +...+|||||||+|..+..+++. +..+|+++|+|+.+++.|++++...  +. ..+++++++|+... + ...  ..++
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~-l-~~~--~~~~  194 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF-L-KNA--AEGS  194 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH-H-HTS--CTTC
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH-H-Hhc--cCCC
Confidence            45689999999999888887765 3579999999999999999987542  11 23689999997541 1 000  2468


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ||+|++....+......-..+.+++++.++|+|||+|++..
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            99999865422101000113689999999999999999873

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.15  E-value=6.2e-11  Score=111.40  Aligned_cols=106  Identities=14%  Similarity=0.029  Sum_probs=86.5

Q ss_pred             HHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      +.....++.+|||+|||+|..+..++..+..+|+++|+++.+++.++++.+.++...+++++++|+....       ..+
T Consensus       119 i~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-------~~~  191 (278)
T 3k6r_A          119 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------GEN  191 (278)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-------CCS
T ss_pred             HHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-------ccc
Confidence            4455778999999999999999888888878999999999999999999988877778999999987643       247


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .||.|++... ++       ...++..+.++||+||++.+.
T Consensus       192 ~~D~Vi~~~p-~~-------~~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          192 IADRILMGYV-VR-------THEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             CEEEEEECCC-SS-------GGGGHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEECCC-Cc-------HHHHHHHHHHHcCCCCEEEEE
Confidence            8999987642 22       234677788899999988654

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.15  E-value=3e-11  Score=115.78  Aligned_cols=112  Identities=14%  Similarity=0.134  Sum_probs=83.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc--CC-CceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~--~~-~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +.+.+|||||||+|..+..+++. +..+++++|+|+.+++.|++++...  .. ..+++++++|+...     +....++
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~-----l~~~~~~  189 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-----LENVTNT  189 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-----HHHCCSC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH-----HhhcCCC
Confidence            45689999999999888888766 4679999999999999999987641  11 23689999997431     1113578


Q ss_pred             ccEEEEccchhhccCCHHHH--HHHHHHHHhcccCCcEEEEEeCC
Q 018352          106 ADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~--~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ||+|++...-++  ......  +.+++++.++|+|||++++...+
T Consensus       190 fDvIi~d~~~p~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          190 YDVIIVDSSDPI--GPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EEEEEEECCCSS--SGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ceEEEECCcCCC--CcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            999998653221  111111  68899999999999999997644

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.14  E-value=2.5e-10  Score=114.15  Aligned_cols=114  Identities=21%  Similarity=0.194  Sum_probs=83.9

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|||+|+.+..++.. + ..+|+|+|+|+.+++.++++.+..+.. ++.++++|+......  +  .+++||
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~--~--~~~~fD  332 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEI--I--GEEVAD  332 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSS--S--CSSCEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchh--h--ccCCCC
Confidence            47789999999999988888775 3 369999999999999999998765442 689999998764410  0  236899


Q ss_pred             EEEEc-----c-chhh------cc--CCH----HHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          108 LVCCF-----Q-HLQM------CF--ETE----ERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       108 lV~~~-----~-~lh~------~f--es~----~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +|++.     . .++.      ..  +..    .....+++++.++|||||+++.+++.
T Consensus       333 ~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs  391 (450)
T 2yxl_A          333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS  391 (450)
T ss_dssp             EEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             EEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            99962     1 2221      00  000    11267899999999999999987654

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.13  E-value=1e-10  Score=111.83  Aligned_cols=110  Identities=12%  Similarity=0.032  Sum_probs=79.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc--CC-CceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~--~~-~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +...+|||||||+|..+..+++. +..+|+++|+|+.+++.|++++...  +. ..+++++.+|+...     +....++
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~-----l~~~~~~  181 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-----LKNHKNE  181 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-----HHHCTTC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH-----HHhcCCC
Confidence            45689999999999888887765 4579999999999999999987542  11 23689999987531     1113578


Q ss_pred             ccEEEEccchhhccCCHHHH--HHHHHHHHhcccCCcEEEEEe
Q 018352          106 ADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~--~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ||+|++....+.  ......  ..+++++.++|+|||++++..
T Consensus       182 fD~Ii~d~~~~~--~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          182 FDVIITDSSDPV--GPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             EEEEEECCC---------------HHHHHHHHEEEEEEEEEEC
T ss_pred             ceEEEEcCCCCC--CcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            999998664332  111111  689999999999999999885

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.13  E-value=2.2e-10  Score=110.76  Aligned_cols=97  Identities=16%  Similarity=0.143  Sum_probs=79.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      +..+|||||||+|..+..+++. +..+++++|+ +.+++.|++.       .+++|+.+|+.. ++      +  .||+|
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~------~--~~D~v  255 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN-------ENLNFVGGDMFK-SI------P--SADAV  255 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC-------SSEEEEECCTTT-CC------C--CCSEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC-------CCcEEEeCccCC-CC------C--CceEE
Confidence            5689999999999988888776 3458999999 7888766531       258999999876 44      2  49999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccC---CcEEEEEe
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKP---GGYFLGIT  146 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~Lkp---GG~fi~t~  146 (357)
                      ++..++|+ + +.++..++|++++++|+|   ||++++..
T Consensus       256 ~~~~vlh~-~-~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          256 LLKWVLHD-W-NDEQSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             EEESCGGG-S-CHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             EEcccccC-C-CHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            99999998 5 455567999999999999   99999873

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.13  E-value=3.9e-11  Score=112.87  Aligned_cols=112  Identities=14%  Similarity=0.142  Sum_probs=83.7

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcC---CCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +++.+|||||||+|..+..+++. +..+++++|+++.+++.|++++....   ...+++++.+|+...     +....++
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-----l~~~~~~  151 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-----LENVTNT  151 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-----HHHCCSC
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH-----HHhCCCC
Confidence            45689999999999888888766 35799999999999999999875421   123689999997541     1112578


Q ss_pred             ccEEEEccchhhccCCHHHH--HHHHHHHHhcccCCcEEEEEeCC
Q 018352          106 ADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~--~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ||+|++....+..  .....  ..+++++.++|+|||++++...+
T Consensus       152 fD~Ii~d~~~~~~--~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          152 YDVIIVDSSDPIG--PAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             EEEEEEECCCTTT--GGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ceEEEEcCCCCCC--cchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence            9999986543331  11122  68999999999999999988654

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.12  E-value=6.9e-11  Score=118.58  Aligned_cols=112  Identities=19%  Similarity=0.113  Sum_probs=83.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|||+|+.+..++..  +.++|+|+|+|+.+++.++++.+..+..  +.++++|+.....  .   ..++||
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~--~---~~~~FD  172 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAE--A---FGTYFH  172 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHH--H---HCSCEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhh--h---ccccCC
Confidence            47889999999999998888765  3469999999999999999999877553  8888888754221  0   257899


Q ss_pred             EEEEccc------hhh------ccCC------HHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          108 LVCCFQH------LQM------CFET------EERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       108 lV~~~~~------lh~------~fes------~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +|++...      ++.      ....      ....+++|+++.++|||||+++.+|+.
T Consensus       173 ~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs  231 (464)
T 3m6w_A          173 RVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT  231 (464)
T ss_dssp             EEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             EEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence            9996211      111      0000      122378999999999999999987654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.12  E-value=2.5e-10  Score=113.40  Aligned_cols=113  Identities=14%  Similarity=0.112  Sum_probs=84.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|||+|+.+..++... ..+|+|+|+|+.+++.++++.+..+.  ++.++++|+....-  .+  ..++||+
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~--~~--~~~~fD~  318 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQ--WC--GEQQFDR  318 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHH--HH--TTCCEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchh--hc--ccCCCCE
Confidence            467899999999999988887763 36999999999999999999876644  57899999877541  11  3478999


Q ss_pred             EEEcc------chhhc-----cCCH-------HHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQ------HLQMC-----FETE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~------~lh~~-----fes~-------~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |++..      .++..     ..+.       .....+++++.++|||||+++.++++
T Consensus       319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs  376 (429)
T 1sqg_A          319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS  376 (429)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred             EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            98632      12210     0011       11258899999999999999988644

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.11  E-value=3.4e-10  Score=103.82  Aligned_cols=102  Identities=18%  Similarity=0.087  Sum_probs=82.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .+..+|||||||.|-++..|.  +..+|+|+|||+.|++.++++....+  .+..|.++|....+.       .++||+|
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g--~~~~~~v~D~~~~~~-------~~~~Dvv  172 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD--WDFTFALQDVLCAPP-------AEAGDLA  172 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT--CEEEEEECCTTTSCC-------CCBCSEE
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC--CCceEEEeecccCCC-------CCCcchH
Confidence            457799999999997777776  67799999999999999999976654  377899999987665       4699999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ++.-++|+ +++.+  +....++...|+++|+++-.
T Consensus       173 Lllk~lh~-LE~q~--~~~~~~ll~aL~~~~vvVsf  205 (253)
T 3frh_A          173 LIFKLLPL-LEREQ--AGSAMALLQSLNTPRMAVSF  205 (253)
T ss_dssp             EEESCHHH-HHHHS--TTHHHHHHHHCBCSEEEEEE
T ss_pred             HHHHHHHH-hhhhc--hhhHHHHHHHhcCCCEEEEc
Confidence            99999998 53333  33444888899999877644

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.11  E-value=2e-10  Score=110.61  Aligned_cols=111  Identities=12%  Similarity=0.077  Sum_probs=85.8

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..+.++.+|||+|||+|..+.. +. +..+|+|+|+|+.+++.|+++.+.++...++.|+++|+....         ++|
T Consensus       191 ~~~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---------~~f  259 (336)
T 2yx1_A          191 KKVSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---------VKG  259 (336)
T ss_dssp             HHCCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------CCE
T ss_pred             HhcCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------CCC
Confidence            4456789999999999988877 65 677999999999999999999987765447999999986521         679


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc--hHHHHHH
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKY  156 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~--~~i~~~~  156 (357)
                      |+|++... ++       ...++..+.++|+|||++++...+.  ..+.+.+
T Consensus       260 D~Vi~dpP-~~-------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~l  303 (336)
T 2yx1_A          260 NRVIMNLP-KF-------AHKFIDKALDIVEEGGVIHYYTIGKDFDKAIKLF  303 (336)
T ss_dssp             EEEEECCT-TT-------GGGGHHHHHHHEEEEEEEEEEEEESSSHHHHHHH
T ss_pred             cEEEECCc-Hh-------HHHHHHHHHHHcCCCCEEEEEEeecCchHHHHHH
Confidence            99998642 12       2267899999999999988764333  3444433

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.08  E-value=3.5e-10  Score=114.06  Aligned_cols=112  Identities=12%  Similarity=0.034  Sum_probs=83.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++.+|||+|||+|+.+..++..  +.+.|+|+|+|+.+++.++++.+..+.. ++.++++|+......     ..++||+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~-----~~~~fD~  190 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAA-----VPEMFDA  190 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHH-----STTCEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhh-----ccccCCE
Confidence            7889999999999988888775  3469999999999999999998766543 688999998763221     2468999


Q ss_pred             EEEcc------chhhcc-----CCH-------HHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQ------HLQMCF-----ETE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~------~lh~~f-----es~-------~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|.-      .++..-     -+.       ...+++|+++.++|||||+++.+|+.
T Consensus       191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs  248 (479)
T 2frx_A          191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT  248 (479)
T ss_dssp             EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence            99731      121100     011       22457899999999999999988654

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.08  E-value=7.3e-10  Score=104.96  Aligned_cols=79  Identities=19%  Similarity=0.187  Sum_probs=60.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|+++....+. .+++++++|+...++        .+||+
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~--------~~~D~  109 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF--------PKFDV  109 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC--------CCCSE
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc--------ccCCE
Confidence            346789999999999888887665 45999999999999999998865432 368999999977543        47999


Q ss_pred             EEEccchhh
Q 018352          109 VCCFQHLQM  117 (357)
Q Consensus       109 V~~~~~lh~  117 (357)
                      |+++...+.
T Consensus       110 Vv~n~py~~  118 (299)
T 2h1r_A          110 CTANIPYKI  118 (299)
T ss_dssp             EEEECCGGG
T ss_pred             EEEcCCccc
Confidence            999877665

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.07  E-value=2.7e-10  Score=114.04  Aligned_cols=113  Identities=14%  Similarity=0.050  Sum_probs=83.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|||+|+.+..++..  +.++|+++|+|+.+++.++++.+..+.. ++.++++|+.....  .   ..++||
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~--~---~~~~FD  177 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVP--H---FSGFFD  177 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHH--H---HTTCEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhh--h---ccccCC
Confidence            47889999999999988888765  4469999999999999999998876543 68888888754221  1   247899


Q ss_pred             EEEEccc---hhhccCCH---------------HHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          108 LVCCFQH---LQMCFETE---------------ERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       108 lV~~~~~---lh~~fes~---------------~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +|++...   ....-.+.               ...+++|.++.++|||||+++.+|+.
T Consensus       178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs  236 (456)
T 3m4x_A          178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT  236 (456)
T ss_dssp             EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred             EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence            9997431   11100011               22347899999999999999987664

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.07  E-value=1.4e-10  Score=107.36  Aligned_cols=104  Identities=17%  Similarity=0.193  Sum_probs=84.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++..+|||||||.|-++..|... +..+|+|+||++.|++.++++...++.  +..+.+.|......       .++||+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~p-------~~~~Dv  201 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDRL-------DEPADV  201 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSCC-------CSCCSE
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccCC-------CCCcch
Confidence            45679999999999888777766 677999999999999999999887654  57889999876554       588999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |++.-++|+ ++.+. ....+ ++.+.|+++|.|+--
T Consensus       202 aL~lkti~~-Le~q~-kg~g~-~ll~aL~~~~vvVSf  235 (281)
T 3lcv_B          202 TLLLKTLPC-LETQQ-RGSGW-EVIDIVNSPNIVVTF  235 (281)
T ss_dssp             EEETTCHHH-HHHHS-TTHHH-HHHHHSSCSEEEEEE
T ss_pred             HHHHHHHHH-hhhhh-hHHHH-HHHHHhCCCCEEEec
Confidence            999999999 42222 22444 899999999988754

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.02  E-value=1.2e-09  Score=107.09  Aligned_cols=114  Identities=16%  Similarity=0.153  Sum_probs=88.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcC---------------------------------------CeEEEEeCChHHHHHH
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALI---------------------------------------ANYIGIDVATSGIGEA   70 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~---------------------------------------~~v~GiDiS~~~l~~A   70 (357)
                      .++.+|||++||+|..+...+....                                       .+|+|+|+++.|++.|
T Consensus       194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A  273 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA  273 (385)
T ss_dssp             CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence            4678999999999988877655421                                       4799999999999999


Q ss_pred             HHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccC--CcEEEEEeCC
Q 018352           71 RDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP--GGYFLGITPD  148 (357)
Q Consensus        71 ~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~Lkp--GG~fi~t~pd  148 (357)
                      +++....+....++|.++|+.....       ..+||+|+|+-.+..-..+.+....+.+.+.+.||+  ||.+++.+++
T Consensus       274 r~Na~~~gl~~~i~~~~~D~~~l~~-------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~  346 (385)
T 3ldu_A          274 RENAEIAGVDEYIEFNVGDATQFKS-------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSY  346 (385)
T ss_dssp             HHHHHHHTCGGGEEEEECCGGGCCC-------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred             HHHHHHcCCCCceEEEECChhhcCc-------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence            9998877655579999999876443       368999999775432222345667778888888876  9999988888


Q ss_pred             ch
Q 018352          149 SS  150 (357)
Q Consensus       149 ~~  150 (357)
                      ..
T Consensus       347 ~~  348 (385)
T 3ldu_A          347 ED  348 (385)
T ss_dssp             TT
T ss_pred             HH
Confidence            65

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.02  E-value=3.3e-09  Score=104.01  Aligned_cols=115  Identities=11%  Similarity=0.045  Sum_probs=91.3

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcC---------------------------------------CeEEEEeCChHHHHH
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALI---------------------------------------ANYIGIDVATSGIGE   69 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~---------------------------------------~~v~GiDiS~~~l~~   69 (357)
                      ..++..|||.+||+|..+...+....                                       .+++|+|+|+.|++.
T Consensus       192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~  271 (384)
T 3ldg_A          192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI  271 (384)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence            35678999999999988876654321                                       359999999999999


Q ss_pred             HHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccC--CcEEEEEeC
Q 018352           70 ARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP--GGYFLGITP  147 (357)
Q Consensus        70 A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~Lkp--GG~fi~t~p  147 (357)
                      |+++.+..+....++|.++|+.....       ..+||+|+|+--++.-+.+.+....+.+.+.+.||+  ||.+.+.++
T Consensus       272 Ar~Na~~~gl~~~I~~~~~D~~~l~~-------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  344 (384)
T 3ldg_A          272 ARKNAREVGLEDVVKLKQMRLQDFKT-------NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN  344 (384)
T ss_dssp             HHHHHHHTTCTTTEEEEECCGGGCCC-------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred             HHHHHHHcCCCCceEEEECChHHCCc-------cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence            99999877665579999999877543       358999999865444345667778888888888876  999999999


Q ss_pred             Cch
Q 018352          148 DSS  150 (357)
Q Consensus       148 d~~  150 (357)
                      +.+
T Consensus       345 ~~~  347 (384)
T 3ldg_A          345 DTD  347 (384)
T ss_dssp             CTT
T ss_pred             CHH
Confidence            865

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.00  E-value=1.9e-09  Score=106.03  Aligned_cols=115  Identities=18%  Similarity=0.108  Sum_probs=86.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcC---------------------------------------CeEEEEeCChHHHHH
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALI---------------------------------------ANYIGIDVATSGIGE   69 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~---------------------------------------~~v~GiDiS~~~l~~   69 (357)
                      ..++..|||.+||+|..+...+....                                       .+++|+|+|+.|++.
T Consensus       199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~  278 (393)
T 3k0b_A          199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI  278 (393)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence            34678999999999988876655321                                       369999999999999


Q ss_pred             HHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccC--CcEEEEEeC
Q 018352           70 ARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP--GGYFLGITP  147 (357)
Q Consensus        70 A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~Lkp--GG~fi~t~p  147 (357)
                      |+++.+..+....++|.++|+.....       ..+||+|+|+-.++.-....+....+.+.+.+.||+  ||.+++.++
T Consensus       279 Ar~Na~~~gl~~~I~~~~~D~~~~~~-------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  351 (393)
T 3k0b_A          279 AKQNAVEAGLGDLITFRQLQVADFQT-------EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS  351 (393)
T ss_dssp             HHHHHHHTTCTTCSEEEECCGGGCCC-------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             HHHHHHHcCCCCceEEEECChHhCCC-------CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            99998877655568999999877543       358999999854322122334566677777777766  999999988


Q ss_pred             Cch
Q 018352          148 DSS  150 (357)
Q Consensus       148 d~~  150 (357)
                      +..
T Consensus       352 ~~~  354 (393)
T 3k0b_A          352 YEL  354 (393)
T ss_dssp             CTT
T ss_pred             CHH
Confidence            865

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.98  E-value=1e-09  Score=107.75  Aligned_cols=102  Identities=20%  Similarity=0.217  Sum_probs=76.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++.+|||+|||+|..+..+++.  ...+++|+|+++.+++.|          .++.++++|+....       ..++||+
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~-------~~~~fD~  101 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWE-------PGEAFDL  101 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCC-------CSSCEEE
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcC-------ccCCCCE
Confidence            5679999999999988888765  457999999999999877          15789999986532       2468999


Q ss_pred             EEEccchhhccC--------CHHH-----------------HHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCFQHLQMCFE--------TEER-----------------ARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~~lh~~fe--------s~~~-----------------~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |+++-.+...-.        ..+.                 ...+++.+.++|+|||++++.+|+.
T Consensus       102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A          102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence            999633221000        1111                 1267999999999999999998874

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.96  E-value=9.7e-10  Score=102.32  Aligned_cols=100  Identities=10%  Similarity=-0.015  Sum_probs=76.9

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc--C-CCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--R-KNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~--~-~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +...+|||||||+|..+..+++.+ .+++++|+++.+++.|++++...  . ...+++++.+|+...        . ++|
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~--------~-~~f  140 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD--------I-KKY  140 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC--------C-CCE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH--------H-hhC
Confidence            355799999999998888877775 89999999999999998865421  0 123688899987542        1 679


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|++..     ...    ..+++++.++|+|||++++...+
T Consensus       141 D~Ii~d~-----~dp----~~~~~~~~~~L~pgG~lv~~~~~  173 (262)
T 2cmg_A          141 DLIFCLQ-----EPD----IHRIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_dssp             EEEEESS-----CCC----HHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CEEEECC-----CCh----HHHHHHHHHhcCCCcEEEEEcCC
Confidence            9999863     111    23899999999999999987433

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.96  E-value=5.2e-09  Score=103.92  Aligned_cols=109  Identities=21%  Similarity=0.095  Sum_probs=80.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||+|||+|..+..++.. ..+|+|+|+|+.|++.|+++.+.++..  ++|+++|+.....        .+||+
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~--------~~fD~  356 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSV--------KGFDT  356 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCC--------TTCSE
T ss_pred             cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCc--------cCCCE
Confidence            356789999999999888877665 559999999999999999998876543  8999999876421        27999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                      |++.....- .     ...+++.+. .|+|||+++++ .|...+.+.+
T Consensus       357 Vv~dPPr~g-~-----~~~~~~~l~-~l~p~givyvs-c~p~tlarDl  396 (425)
T 2jjq_A          357 VIVDPPRAG-L-----HPRLVKRLN-REKPGVIVYVS-CNPETFARDV  396 (425)
T ss_dssp             EEECCCTTC-S-----CHHHHHHHH-HHCCSEEEEEE-SCHHHHHHHH
T ss_pred             EEEcCCccc-h-----HHHHHHHHH-hcCCCcEEEEE-CChHHHHhHH
Confidence            998654221 1     123444444 48999988776 4555554433

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.95  E-value=1.2e-09  Score=108.98  Aligned_cols=112  Identities=18%  Similarity=0.113  Sum_probs=83.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--------------cCCeEEEEeCChHHHHHHHHHhHhcCCCc-eeEEEEcCCCCCch
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--------------LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENF   95 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--------------~~~~v~GiDiS~~~l~~A~~r~~~~~~~~-~v~f~~~D~~~~~~   95 (357)
                      ++.+|||.|||+|+.+..+...              ...+++|+|+++.+++.|+.+....+... ++.+.++|....+.
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            4679999999999988776653              23579999999999999998876554321 56789999876543


Q ss_pred             hhhhhhcCCcccEEEEccchhhccCC-------------HHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           96 ETQMQEKANQADLVCCFQHLQMCFET-------------EERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        96 ~~~l~~~~~~FDlV~~~~~lh~~fes-------------~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                             ..+||+|+++..++.....             ......+++.+.+.|||||++.+.+|++
T Consensus       251 -------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~  310 (445)
T 2okc_A          251 -------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  310 (445)
T ss_dssp             -------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             -------cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence                   2489999998655431110             0112478999999999999999998764

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.93  E-value=1.9e-08  Score=99.98  Aligned_cols=114  Identities=16%  Similarity=0.145  Sum_probs=80.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|+++.+.++.. +++|+++|+.....  .+....++||+|
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~--~~~~~~~~fD~V  360 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVT--KQPWAKNGFDKV  360 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCS--SSGGGTTCCSEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhh--hhhhhcCCCCEE
Confidence            46789999999999888887666 569999999999999999998776544 79999999976211  001134689999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                      ++.-...-   ..    .+++.+.+ ++|++++++ .+|...+.+-+
T Consensus       361 v~dPPr~g---~~----~~~~~l~~-~~p~~ivyv-sc~p~tlard~  398 (433)
T 1uwv_A          361 LLDPARAG---AA----GVMQQIIK-LEPIRIVYV-SCNPATLARDS  398 (433)
T ss_dssp             EECCCTTC---CH----HHHHHHHH-HCCSEEEEE-ESCHHHHHHHH
T ss_pred             EECCCCcc---HH----HHHHHHHh-cCCCeEEEE-ECChHHHHhhH
Confidence            98653322   11    24444443 788876665 45665555443

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.92  E-value=1e-08  Score=97.01  Aligned_cols=79  Identities=14%  Similarity=0.003  Sum_probs=65.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||||||+|..+..++.. ..+|+|+|+++.+++.|++++...   .+++++++|+...++      +..+||+
T Consensus        48 ~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~------~~~~fD~  117 (295)
T 3gru_A           48 LTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDL------NKLDFNK  117 (295)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCG------GGSCCSE
T ss_pred             CCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCc------ccCCccE
Confidence            347789999999999888888776 469999999999999999998632   278999999988766      3457999


Q ss_pred             EEEccchhh
Q 018352          109 VCCFQHLQM  117 (357)
Q Consensus       109 V~~~~~lh~  117 (357)
                      |+++..++.
T Consensus       118 Iv~NlPy~i  126 (295)
T 3gru_A          118 VVANLPYQI  126 (295)
T ss_dssp             EEEECCGGG
T ss_pred             EEEeCcccc
Confidence            998876665

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.89  E-value=5.8e-09  Score=95.80  Aligned_cols=77  Identities=8%  Similarity=-0.013  Sum_probs=59.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++... .+|+|+|+|+.|++.|+++....   .+++++++|+...++.     ....|+ |
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~-----~~~~~~-v   98 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFP-----KNQSYK-I   98 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCC-----SSCCCE-E
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCcc-----cCCCeE-E
Confidence            467899999999998888887766 69999999999999999987642   2789999999776551     124564 4


Q ss_pred             EEccchh
Q 018352          110 CCFQHLQ  116 (357)
Q Consensus       110 ~~~~~lh  116 (357)
                      +++...+
T Consensus        99 v~nlPy~  105 (244)
T 1qam_A           99 FGNIPYN  105 (244)
T ss_dssp             EEECCGG
T ss_pred             EEeCCcc
Confidence            4554443

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.87  E-value=1.5e-08  Score=98.65  Aligned_cols=113  Identities=12%  Similarity=0.097  Sum_probs=81.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc--------
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--------  102 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~--------  102 (357)
                      .+.+|||+|||+|..+..++. ...+|+|+|+|+.+++.|+++.+.++. .+++|+++|+...  ...+...        
T Consensus       213 ~~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~--~~~~~~~~~~~~l~~  288 (369)
T 3bt7_A          213 SKGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEF--TQAMNGVREFNRLQG  288 (369)
T ss_dssp             CCSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHH--HHHHSSCCCCTTGGG
T ss_pred             CCCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHH--HHHHhhccccccccc
Confidence            357899999999988876654 567999999999999999999887654 3789999998542  1111100        


Q ss_pred             ----CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352          103 ----ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (357)
Q Consensus       103 ----~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~  157 (357)
                          ..+||+|++.-.-.-          +...+.+.|+++|.++...+|...+.+-+.
T Consensus       289 ~~~~~~~fD~Vv~dPPr~g----------~~~~~~~~l~~~g~ivyvsc~p~t~ard~~  337 (369)
T 3bt7_A          289 IDLKSYQCETIFVDPPRSG----------LDSETEKMVQAYPRILYISCNPETLCKNLE  337 (369)
T ss_dssp             SCGGGCCEEEEEECCCTTC----------CCHHHHHHHTTSSEEEEEESCHHHHHHHHH
T ss_pred             cccccCCCCEEEECcCccc----------cHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence                137999987643211          233455667799999999999877655443

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.86  E-value=1.1e-08  Score=100.03  Aligned_cols=105  Identities=10%  Similarity=-0.014  Sum_probs=80.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc---------------CCCceeEEEEcCCCCCc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ---------------RKNFIAEFFEADPCAEN   94 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~---------------~~~~~v~f~~~D~~~~~   94 (357)
                      ++.+|||+|||+|.....++.. +..+|+++|+++.+++.|++..+.+               +.. +++++++|+....
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence            6789999999999988888776 5568999999999999999998776               433 4899999975421


Q ss_pred             hhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        95 ~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .     ...++||+|++.-   +  .+   ...++..+.+.|++||+++++..+.
T Consensus       126 ~-----~~~~~fD~I~lDP---~--~~---~~~~l~~a~~~lk~gG~l~vt~td~  167 (378)
T 2dul_A          126 A-----ERHRYFHFIDLDP---F--GS---PMEFLDTALRSAKRRGILGVTATDG  167 (378)
T ss_dssp             H-----HSTTCEEEEEECC---S--SC---CHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             H-----hccCCCCEEEeCC---C--CC---HHHHHHHHHHhcCCCCEEEEEeecc
Confidence            1     1135799998653   1  11   2467888899999999998886544

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.86  E-value=3.1e-10  Score=104.10  Aligned_cols=104  Identities=10%  Similarity=0.035  Sum_probs=73.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.|+++...   ..+++++++|+...++.     ..++| .|
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~---~~~v~~~~~D~~~~~~~-----~~~~f-~v   97 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFP-----NKQRY-KI   97 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCC-----CSSEE-EE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc---CCceEEEECChhhcCcc-----cCCCc-EE
Confidence            467899999999999888887776 6999999999999998877652   23789999999876541     13578 55


Q ss_pred             EEccchhhccCCHHHHHHHH--------------HHHHhcccCCcEEEEEe
Q 018352          110 CCFQHLQMCFETEERARRLL--------------QNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L--------------~~i~~~LkpGG~fi~t~  146 (357)
                      +++...+.   +......++              +.+.++|+|||.+.+.+
T Consensus        98 v~n~Py~~---~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           98 VGNIPYHL---STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             EEECCSSS---CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             EEeCCccc---cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            56543322   222222222              55778888888765543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.85  E-value=3.9e-09  Score=99.73  Aligned_cols=97  Identities=15%  Similarity=0.018  Sum_probs=68.3

Q ss_pred             CCCCCEEEEECCCC------ChhHHHHHH-hc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEE-EEcCCCCCchhhhh
Q 018352           29 SHPYVTVCDLYCGA------GVDVDKWET-AL-IANYIGIDVATSGIGEARDTWENQRKNFIAEF-FEADPCAENFETQM   99 (357)
Q Consensus        29 ~~~~~~VLDlGCG~------G~~l~k~~~-~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f-~~~D~~~~~~~~~l   99 (357)
                      ++++.+|||||||+      |.  ..++. .+ ..+|+|+|+|+. +         .    +++| +++|+....+    
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------~----~v~~~i~gD~~~~~~----  120 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------S----DADSTLIGDCATVHT----  120 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------C----SSSEEEESCGGGCCC----
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------C----CCEEEEECccccCCc----
Confidence            45788999999954      65  22222 23 469999999997 1         1    5778 9999876544    


Q ss_pred             hhcCCcccEEEEccchhhc-------cCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          100 QEKANQADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~-------fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                         .++||+|+|....+..       ....+..+.+++++.++|||||.|++.+..
T Consensus       121 ---~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~  173 (290)
T 2xyq_A          121 ---ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE  173 (290)
T ss_dssp             ---SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             ---cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence               3689999997542210       111234568999999999999999997543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.81  E-value=2.5e-08  Score=93.24  Aligned_cols=89  Identities=16%  Similarity=0.067  Sum_probs=68.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++ +|||||||+|..+..++..+ .+|+|+|+++.|++.+++++...    +++++++|+...++..     ...+|.
T Consensus        45 ~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~~----~v~vi~~D~l~~~~~~-----~~~~~~  113 (271)
T 3fut_A           45 PFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSGL----PVRLVFQDALLYPWEE-----VPQGSL  113 (271)
T ss_dssp             CCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTTS----SEEEEESCGGGSCGGG-----SCTTEE
T ss_pred             CCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCCC----CEEEEECChhhCChhh-----ccCccE
Confidence            4567 99999999998888887765 69999999999999999988642    7899999998776621     136899


Q ss_pred             EEEccchhhccCCHHHHHHHHHH
Q 018352          109 VCCFQHLQMCFETEERARRLLQN  131 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~  131 (357)
                      |+++...+-   +.+-..+++..
T Consensus       114 iv~NlPy~i---ss~il~~ll~~  133 (271)
T 3fut_A          114 LVANLPYHI---ATPLVTRLLKT  133 (271)
T ss_dssp             EEEEECSSC---CHHHHHHHHHH
T ss_pred             EEecCcccc---cHHHHHHHhcC
Confidence            888765554   44545555554

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.81  E-value=2.3e-08  Score=95.20  Aligned_cols=114  Identities=11%  Similarity=-0.004  Sum_probs=80.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|||+|+.+..++..  +.++|+++|+++.+++.++++.+..+.. +++++++|+.......  . ...+||
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~--~-~~~~fD  176 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSD--P-RYHEVH  176 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTC--G-GGTTEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCccc--c-ccCCCC
Confidence            47889999999999988887764  4579999999999999999998876542 6899999986543210  0 115799


Q ss_pred             EEEEcc-----c-hhh------c----cCCH----HHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          108 LVCCFQ-----H-LQM------C----FETE----ERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       108 lV~~~~-----~-lh~------~----fes~----~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      .|++.-     + +..      .    -+..    ...+++|+++.++|+ ||+++..|+.
T Consensus       177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs  236 (309)
T 2b9e_A          177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS  236 (309)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred             EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence            999731     1 110      0    0011    123467888988887 9999877655

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.77  E-value=1.3e-08  Score=99.88  Aligned_cols=107  Identities=16%  Similarity=0.171  Sum_probs=82.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCce-eEEEEcCCCCCchhhhhh-hcCCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENFETQMQ-EKANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~-v~f~~~D~~~~~~~~~l~-~~~~~F  106 (357)
                      ++.+|||++||+|.....++..  +..+|+++|+++.+++.+++..+.++...+ ++++++|+..  +   +. ...++|
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~--~---l~~~~~~~f  126 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANF--F---LRKEWGFGF  126 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH--H---HHSCCSSCE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHH--H---HHHhhCCCC
Confidence            5789999999999988887774  346899999999999999999988766545 8999999744  1   11 123579


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      |+|++.-   |  ..   ...++..+.++|++||+++++.-+..
T Consensus       127 D~V~lDP---~--g~---~~~~l~~a~~~Lk~gGll~~t~t~~~  162 (392)
T 3axs_A          127 DYVDLDP---F--GT---PVPFIESVALSMKRGGILSLTATDTA  162 (392)
T ss_dssp             EEEEECC---S--SC---CHHHHHHHHHHEEEEEEEEEEECCHH
T ss_pred             cEEEECC---C--cC---HHHHHHHHHHHhCCCCEEEEEecchh
Confidence            9999875   2  11   23578888999999999988865543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.73  E-value=6.8e-08  Score=89.47  Aligned_cols=79  Identities=11%  Similarity=0.088  Sum_probs=61.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||||||+|..+..++... .+|+|+|+++.|++.+++++...   .+++++++|+...++....  ...+||+
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~--~~~~~~v  100 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQ---KNITIYQNDALQFDFSSVK--TDKPLRV  100 (255)
T ss_dssp             CCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTC---TTEEEEESCTTTCCGGGSC--CSSCEEE
T ss_pred             CCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhC---CCcEEEEcchHhCCHHHhc--cCCCeEE
Confidence            4578899999999998888877665 69999999999999999998652   3789999999987763211  1357884


Q ss_pred             EEEccc
Q 018352          109 VCCFQH  114 (357)
Q Consensus       109 V~~~~~  114 (357)
                       +++..
T Consensus       101 -v~NlP  105 (255)
T 3tqs_A          101 -VGNLP  105 (255)
T ss_dssp             -EEECC
T ss_pred             -EecCC
Confidence             44443

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.69  E-value=3.9e-08  Score=100.53  Aligned_cols=114  Identities=16%  Similarity=0.112  Sum_probs=82.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHh---c----------------CCeEEEEeCChHHHHHHHHHhHhcCCCc----eeEEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA---L----------------IANYIGIDVATSGIGEARDTWENQRKNF----IAEFFE   87 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~---~----------------~~~v~GiDiS~~~l~~A~~r~~~~~~~~----~v~f~~   87 (357)
                      ++.+|||.|||+|+++......   .                ...++|+|+++.+++.|+.+..-.+...    ++.+.+
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~  248 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  248 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence            5679999999999988766543   1                2379999999999999998775443321    267889


Q ss_pred             cCCCCCchhhhhhhcCCcccEEEEccchhhccC----------CHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           88 ADPCAENFETQMQEKANQADLVCCFQHLQMCFE----------TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        88 ~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fe----------s~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +|....+..     ...+||+|+++-.+.....          .......++..+.+.|+|||++.+.+|++
T Consensus       249 gDtL~~~~~-----~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          249 GNTLGSDGE-----NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             SCTTSHHHH-----TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             CCCcccccc-----cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            997653321     2468999999865443111          01122378999999999999999998875

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.65  E-value=1.5e-07  Score=99.10  Aligned_cols=118  Identities=14%  Similarity=0.043  Sum_probs=83.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhc-------------------------------------------CCeEEEEeCChHH
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETAL-------------------------------------------IANYIGIDVATSG   66 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~-------------------------------------------~~~v~GiDiS~~~   66 (357)
                      .++..|||.+||+|..+...+...                                           ..+++|+|+++.|
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            467899999999998877655421                                           1479999999999


Q ss_pred             HHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHH---HHHhcccCCcEEE
Q 018352           67 IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQ---NVSSLLKPGGYFL  143 (357)
Q Consensus        67 l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~---~i~~~LkpGG~fi  143 (357)
                      ++.|+.+....+....++|.++|+......    ...++||+|+|+--+..-+.+.+....+.+   ++.+.+.|||.++
T Consensus       269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~----~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~  344 (703)
T 3v97_A          269 IQRARTNARLAGIGELITFEVKDVAQLTNP----LPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLS  344 (703)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEECCGGGCCCS----CTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             HHHHHHHHHHcCCCCceEEEECChhhCccc----cccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEE
Confidence            999999988776655689999998764220    012389999998433221223334444444   4445556899999


Q ss_pred             EEeCCchH
Q 018352          144 GITPDSST  151 (357)
Q Consensus       144 ~t~pd~~~  151 (357)
                      +.+++...
T Consensus       345 ilt~~~~l  352 (703)
T 3v97_A          345 LFSASPDL  352 (703)
T ss_dssp             EEESCHHH
T ss_pred             EEeCCHHH
Confidence            99998653

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.61  E-value=5.3e-07  Score=84.58  Aligned_cols=63  Identities=13%  Similarity=0.151  Sum_probs=52.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcC---CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALI---ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~---~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~   96 (357)
                      ..++.+|||||||+|..+..++....   .+|+|+|+|+.|++.|+++. .    .+++++++|+...++.
T Consensus        40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~----~~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G----ELLELHAGDALTFDFG  105 (279)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G----GGEEEEESCGGGCCGG
T ss_pred             CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C----CCcEEEECChhcCChh
Confidence            45788999999999998888877644   23999999999999999884 2    2789999999887764

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.59  E-value=3.2e-08  Score=91.86  Aligned_cols=84  Identities=15%  Similarity=0.065  Sum_probs=59.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCCh-------HHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVAT-------SGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~-------~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+|+       .+++.|+++.+.++...+++|+++|+...  ...+....
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~--l~~~~~~~  159 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQ--MPALVKTQ  159 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHH--HHHHHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHH--HHhhhccC
Confidence            46899999999999988887764 5899999999       99999987665432222589999997541  11111011


Q ss_pred             CcccEEEEccchhh
Q 018352          104 NQADLVCCFQHLQM  117 (357)
Q Consensus       104 ~~FDlV~~~~~lh~  117 (357)
                      ++||+|++...+++
T Consensus       160 ~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          160 GKPDIVYLDPMYPE  173 (258)
T ss_dssp             CCCSEEEECCCC--
T ss_pred             CCccEEEECCCCCC
Confidence            68999999765444

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.58  E-value=2.2e-07  Score=85.70  Aligned_cols=63  Identities=13%  Similarity=0.045  Sum_probs=52.6

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~   96 (357)
                      ..++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.++++ .    ..+++++++|+...++.
T Consensus        29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~D~~~~~~~   91 (249)
T 3ftd_A           29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINEDASKFPFC   91 (249)
T ss_dssp             CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECSCTTTCCGG
T ss_pred             CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEcchhhCChh
Confidence            346789999999999888887776557999999999999999877 2    23789999999887763

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.58  E-value=2.1e-07  Score=86.02  Aligned_cols=80  Identities=9%  Similarity=-0.087  Sum_probs=58.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCe--EEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIAN--YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~--v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ..++.+|||||||+|..+. +. .. .+  |+|+|+++.|++.++++....   .+++++++|+...++...... .+..
T Consensus        19 ~~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~~~-~~~~   91 (252)
T 1qyr_A           19 PQKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAEK-MGQP   91 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHHH-HTSC
T ss_pred             CCCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhhcc-cCCc
Confidence            4577899999999998888 54 33 46  999999999999999877542   278999999988766332110 1234


Q ss_pred             cEEEEccch
Q 018352          107 DLVCCFQHL  115 (357)
Q Consensus       107 DlV~~~~~l  115 (357)
                      |.|+++...
T Consensus        92 ~~vvsNlPY  100 (252)
T 1qyr_A           92 LRVFGNLPY  100 (252)
T ss_dssp             EEEEEECCT
T ss_pred             eEEEECCCC
Confidence            677666543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.57  E-value=3e-07  Score=87.23  Aligned_cols=82  Identities=13%  Similarity=0.060  Sum_probs=63.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~F  106 (357)
                      ..++.+|||+|||+|+.+..++.. +..+|+|+|+|+.|++.|+++.+..+  .+++|+++|....+  ..+.. ...+|
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~--~~l~~~g~~~~   99 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREAD--FLLKTLGIEKV   99 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHH--HHHHHTTCSCE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHH--HHHHhcCCCCC
Confidence            347889999999999999888876 35699999999999999999987653  37899999975532  11111 11579


Q ss_pred             cEEEEccc
Q 018352          107 DLVCCFQH  114 (357)
Q Consensus       107 DlV~~~~~  114 (357)
                      |.|++...
T Consensus       100 D~Vl~D~g  107 (301)
T 1m6y_A          100 DGILMDLG  107 (301)
T ss_dssp             EEEEEECS
T ss_pred             CEEEEcCc
Confidence            99987653

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.55  E-value=1.1e-07  Score=97.29  Aligned_cols=113  Identities=14%  Similarity=0.018  Sum_probs=79.1

Q ss_pred             CCEEEEECCCCChhHHHHHHh--------c--------CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch
Q 018352           32 YVTVCDLYCGAGVDVDKWETA--------L--------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~--------~--------~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~   95 (357)
                      ..+|||.|||+|+++......        .        ...++|+|+++.+++.|+.++.-.+...++.+.++|....+.
T Consensus       245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~  324 (544)
T 3khk_A          245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ  324 (544)
T ss_dssp             SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred             CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence            349999999999988765431        0        347999999999999999887655443344447777665432


Q ss_pred             hhhhhhcCCcccEEEEccchhhc------------------------cCCH-HHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           96 ETQMQEKANQADLVCCFQHLQMC------------------------FETE-ERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        96 ~~~l~~~~~~FDlV~~~~~lh~~------------------------fes~-~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .     ...+||+|+++-.+...                        .... ..--.+++.+.+.|+|||++.+.+|+.
T Consensus       325 ~-----~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          325 H-----PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG  398 (544)
T ss_dssp             C-----TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred             c-----ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence            1     34789999997543310                        0000 011258999999999999999998875

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.53  E-value=3.1e-07  Score=85.45  Aligned_cols=112  Identities=19%  Similarity=0.166  Sum_probs=71.9

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ++.++.+|||||||.|+.+...+.. +...++|+|++..+.....   .......++..+..++....+      ..++|
T Consensus        71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi---~~~~~g~~ii~~~~~~dv~~l------~~~~~  141 (277)
T 3evf_A           71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPM---NVQSLGWNIITFKDKTDIHRL------EPVKC  141 (277)
T ss_dssp             SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCC---CCCBTTGGGEEEECSCCTTTS------CCCCC
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccc---ccCcCCCCeEEEeccceehhc------CCCCc
Confidence            4567889999999999888766554 5667899999854310000   000011144455665533333      45789


Q ss_pred             cEEEEccchhhccCCHHHHH--HHHHHHHhcccCC-cEEEEEeCC
Q 018352          107 DLVCCFQHLQMCFETEERAR--RLLQNVSSLLKPG-GYFLGITPD  148 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~--~~L~~i~~~LkpG-G~fi~t~pd  148 (357)
                      |+|+|..+.+......+..+  .+|+.+.++|+|| |.|++-+..
T Consensus       142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            99999886661010123322  4578899999999 999999877

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.49  E-value=6.7e-07  Score=87.23  Aligned_cols=46  Identities=15%  Similarity=0.166  Sum_probs=37.5

Q ss_pred             cCCcccEEEEccchhhccCC----------------------------------HHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          102 KANQADLVCCFQHLQMCFET----------------------------------EERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes----------------------------------~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      ++++||+|.++.++||+-..                                  ..+...+|+..++.|+|||++++++.
T Consensus       147 P~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          147 PARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCL  226 (374)
T ss_dssp             CTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            47899999999999994211                                  12567789999999999999999854

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.48  E-value=4.9e-07  Score=92.35  Aligned_cols=116  Identities=18%  Similarity=0.099  Sum_probs=83.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh----cCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~----~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      ++.+|||.|||+|+++......    +...++|+|+++.+++.|+.+..-.+.. .++.+.++|....+...   ....+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~---~~~~~  297 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPT---QEPTN  297 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCC---SSCCC
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccc---ccccc
Confidence            5679999999999988777654    2468999999999999999877555443 35788999987652100   13578


Q ss_pred             ccEEEEccchhhccCC------------------HH-HHHHHHHHHHhccc-CCcEEEEEeCCc
Q 018352          106 ADLVCCFQHLQMCFET------------------EE-RARRLLQNVSSLLK-PGGYFLGITPDS  149 (357)
Q Consensus       106 FDlV~~~~~lh~~fes------------------~~-~~~~~L~~i~~~Lk-pGG~fi~t~pd~  149 (357)
                      ||+|+++--+...+..                  .. .--.++..+.+.|+ +||++.+.+|++
T Consensus       298 fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          298 FDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             BSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             ccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            9999997432211100                  00 01248999999999 999999998886

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.48  E-value=1.7e-07  Score=92.45  Aligned_cols=79  Identities=16%  Similarity=0.061  Sum_probs=61.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc--CCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--RKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~--~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +.++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|+++.+..  +. .+++|+++|+... + ...  ..++|
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~-L-~~~--~~~~f  164 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEY-L-PLI--KTFHP  164 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGS-H-HHH--HHHCC
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHh-h-hhc--cCCCc
Confidence            335789999999999888776555 459999999999999999998765  43 4799999998653 1 111  12579


Q ss_pred             cEEEEcc
Q 018352          107 DLVCCFQ  113 (357)
Q Consensus       107 DlV~~~~  113 (357)
                      |+|++.-
T Consensus       165 DvV~lDP  171 (410)
T 3ll7_A          165 DYIYVDP  171 (410)
T ss_dssp             SEEEECC
T ss_pred             eEEEECC
Confidence            9999854

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.42  E-value=1.9e-06  Score=90.82  Aligned_cols=115  Identities=14%  Similarity=0.072  Sum_probs=75.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhc----CCeEEEEeCChHHHHHHHHHhHhc--CC--Cc-eeEEEEcCCCCCchhhhhh
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQ--RK--NF-IAEFFEADPCAENFETQMQ  100 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~----~~~v~GiDiS~~~l~~A~~r~~~~--~~--~~-~v~f~~~D~~~~~~~~~l~  100 (357)
                      .++.+|||.|||+|+.+..++..-    ..+++|+|+++.+++.|+.+....  ..  .. ...+...|......     
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~-----  394 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNP-----  394 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCG-----
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccc-----
Confidence            457899999999999888876642    247999999999999995443221  11  11 12344444433211     


Q ss_pred             hcCCcccEEEEccchhhccCCHH-------------------------HHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          101 EKANQADLVCCFQHLQMCFETEE-------------------------RARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       101 ~~~~~FDlV~~~~~lh~~fes~~-------------------------~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ....+||+|+++--+-.......                         -...+++.+.+.|++||++.+.+|++
T Consensus       395 ~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          395 EDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             GGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred             cccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence            02468999999765411011111                         12347888999999999999999986

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.39  E-value=3.5e-06  Score=75.24  Aligned_cols=104  Identities=5%  Similarity=-0.116  Sum_probs=72.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCC--CceeEEEEcCCCCCc-------------h
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAEN-------------F   95 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~--~~~v~f~~~D~~~~~-------------~   95 (357)
                      +..+|||+|||  ..+..++....++|+.+|.+++..+.|++.++..+.  ..+++++.+|+....             +
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            45799999995  344444433357999999999999999999987765  568999999975421             1


Q ss_pred             hh---hh-hh-cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           96 ET---QM-QE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        96 ~~---~l-~~-~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ..   .+ .. ..++||+|++-...         ....+..+.+.|+|||++++.
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~k---------~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGRF---------RVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSSS---------HHHHHHHHHHHCSSCEEEEET
T ss_pred             HHHhhhhhccccCCCCCEEEEeCCC---------chhHHHHHHHhcCCCeEEEEe
Confidence            10   00 00 13789999887631         124455566899999999654

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.34  E-value=8.6e-07  Score=91.79  Aligned_cols=102  Identities=15%  Similarity=0.101  Sum_probs=73.3

Q ss_pred             CCEEEEECCCCChhHHHHHHh---cCC--eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           32 YVTVCDLYCGAGVDVDKWETA---LIA--NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~---~~~--~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ...|||+|||+|-.....+++   ...  +|++|+-|+ +...|++..+.++...+++++++|+.+..+       ++++
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~L-------PEKV  429 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVA-------PEKA  429 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCC-------SSCE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccC-------Cccc
Confidence            357999999999664433333   222  689999997 555777777777777789999999988765       4789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                      |+|++=. |.|+.-.+. .-.++....+.|||||+++
T Consensus       430 DIIVSEw-MG~fLl~E~-mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          430 DIIVSEL-LGSFADNEL-SPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EEEECCC-CBTTBGGGC-HHHHHHHHGGGEEEEEEEE
T ss_pred             CEEEEEc-CcccccccC-CHHHHHHHHHhcCCCcEEc
Confidence            9998732 223221222 3367888889999999875

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.32  E-value=3.1e-06  Score=82.69  Aligned_cols=111  Identities=14%  Similarity=0.058  Sum_probs=71.6

Q ss_pred             CCEEEEECCCCChhHHHHHHh------------------cCCeEEEEeCC-----------hHHHHHHHHHhHhcCCCce
Q 018352           32 YVTVCDLYCGAGVDVDKWETA------------------LIANYIGIDVA-----------TSGIGEARDTWENQRKNFI   82 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~------------------~~~~v~GiDiS-----------~~~l~~A~~r~~~~~~~~~   82 (357)
                      ..+|+|+||++|..+......                  +--+|+..|+.           +.+.+.+++.   .+...+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCCC
Confidence            578999999999887765443                  11357788877           4444433222   111123


Q ss_pred             eEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCH-----------------------------------HHHHH
Q 018352           83 AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETE-----------------------------------ERARR  127 (357)
Q Consensus        83 v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~-----------------------------------~~~~~  127 (357)
                      ..|+.+...+  |...+- +.++||+|.++.++||+-...                                   .+...
T Consensus       130 ~~f~~gvpgS--Fy~rlf-p~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~  206 (384)
T 2efj_A          130 SCLIGAMPGS--FYSRLF-PEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTT  206 (384)
T ss_dssp             SEEEEECCSC--TTSCCS-CTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchh--hhhccC-CCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHH
Confidence            4667665544  211111 578999999999999942111                                   12345


Q ss_pred             HHHHHHhcccCCcEEEEEeCC
Q 018352          128 LLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       128 ~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +|+..++.|+|||++++++..
T Consensus       207 FL~~Ra~eL~pGG~mvl~~~g  227 (384)
T 2efj_A          207 FLRIHSEELISRGRMLLTFIC  227 (384)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHhccCCeEEEEEec
Confidence            689999999999999999643

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.31  E-value=7.9e-07  Score=82.82  Aligned_cols=112  Identities=18%  Similarity=0.116  Sum_probs=70.7

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHH-hcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~-~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ++.++.+|||||||.|+.+...+. .+...++|+|++..+...+.. .  .....++.....++....+      ...++
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~--~~~g~~ii~~~~~~dv~~l------~~~~~  157 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-R--TTLGWNLIRFKDKTDVFNM------EVIPG  157 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-C--CBTTGGGEEEECSCCGGGS------CCCCC
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-c--ccCCCceEEeeCCcchhhc------CCCCc
Confidence            456788999999999998887664 356689999998764222210 0  0011133333333221112      45789


Q ss_pred             cEEEEccchhhccCCHHHHH--HHHHHHHhcccCC--cEEEEEeCC
Q 018352          107 DLVCCFQHLQMCFETEERAR--RLLQNVSSLLKPG--GYFLGITPD  148 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~--~~L~~i~~~LkpG--G~fi~t~pd  148 (357)
                      |+|+|-.+.+.-....++.+  .+|.-+.++|+||  |.|++-+..
T Consensus       158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            99999886651110123333  4588888999999  999999877

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.31  E-value=1.3e-06  Score=90.75  Aligned_cols=108  Identities=17%  Similarity=0.061  Sum_probs=72.5

Q ss_pred             CCEEEEECCCCChhHHHHHHh----c----------CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352           32 YVTVCDLYCGAGVDVDKWETA----L----------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~----~----------~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~   97 (357)
                      ...|||+|||+|-.....+.+    +          ..+|++||-|+.++..++.+.. ++....++++.+|+.+..+..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            458999999999664322221    2          2389999999988876666554 455557999999997754410


Q ss_pred             hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus        98 ~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                      .. ...++.|+|++-. |.| |-..+-...+|..+.+.|||||++|
T Consensus       489 ~~-~~~ekVDIIVSEl-mGs-fl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 KD-RGFEQPDIIVSEL-LGS-FGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HH-TTCCCCSEEEECC-CBT-TBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cc-CCCCcccEEEEec-ccc-ccchhccHHHHHHHHHhCCCCcEEE
Confidence            00 1157899998854 233 2122334557888899999999875

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.24  E-value=5.5e-06  Score=80.58  Aligned_cols=126  Identities=13%  Similarity=-0.006  Sum_probs=85.5

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcC-------CCceeEEEEcCCCCCchhhhhhhc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-------KNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~-------~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      ++..+||=||.|.|+.+...++.+..+++.+||++..++.|++.+....       ...+++++.+|+..  +.......
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~--fl~~~~~~  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP--VLKRYAKE  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH--HHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH--HHHhhhhc
Confidence            3567999999999999999888777899999999999999998754210       01247888888754  21111123


Q ss_pred             CCcccEEEEccchhhc------cCCHHHHHHHHHHHHhcccCCcEEEEE--eCCchHHHHHHH
Q 018352          103 ANQADLVCCFQHLQMC------FETEERARRLLQNVSSLLKPGGYFLGI--TPDSSTIWAKYQ  157 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~------fes~~~~~~~L~~i~~~LkpGG~fi~t--~pd~~~i~~~~~  157 (357)
                      .++||+|+.-..-...      .....-.+.+++.+.++|+|||+++..  .|........+.
T Consensus       282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~  344 (381)
T 3c6k_A          282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYE  344 (381)
T ss_dssp             TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHH
T ss_pred             cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHH
Confidence            5689999875311100      001222467899999999999999864  565544444443

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.22  E-value=2.8e-06  Score=80.07  Aligned_cols=111  Identities=11%  Similarity=0.064  Sum_probs=80.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc----CCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ----RKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~----~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      +...+||=||.|.|+.+..+++. +..+++.+||++..++.|++.+...    -...+++++.+|+...-     ....+
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l-----~~~~~  156 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV-----NQTSQ  156 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTT-----SCSSC
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHH-----hhccc
Confidence            45689999999999999888876 5679999999999999999876431    11347899999987632     12457


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +||+|+.-..-.......---+.+++.++++|+|||+++..
T Consensus       157 ~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          157 TFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             CEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             cCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence            89999874321100000001246899999999999999976

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.20  E-value=5.4e-06  Score=80.40  Aligned_cols=115  Identities=17%  Similarity=0.023  Sum_probs=80.4

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCC-----CceeEEEEcCCCCCchhhhhhhcC
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK-----NFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~-----~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      .++.+|||+|||.|+=+..++.. ..+.++++|+|+.-++..+++.+....     ..++.+...|.....-     ...
T Consensus       147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~-----~~~  221 (359)
T 4fzv_A          147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE-----LEG  221 (359)
T ss_dssp             CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH-----HST
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch-----hcc
Confidence            47899999999999988777665 335799999999999988887765321     2367778888654221     135


Q ss_pred             CcccEEEE----ccchhhcc---------CCH-------HHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          104 NQADLVCC----FQHLQMCF---------ETE-------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       104 ~~FDlV~~----~~~lh~~f---------es~-------~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +.||.|++    ...-+..+         .+.       ....++|.++.++|||||+++-+|++-
T Consensus       222 ~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          222 DTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             TCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             ccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            78999985    22100000         011       123578999999999999999886653

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.15  E-value=8.3e-07  Score=82.32  Aligned_cols=114  Identities=10%  Similarity=0.011  Sum_probs=70.5

Q ss_pred             CCC--CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-------C-CCceeEEEEcCCCCCchhhhh
Q 018352           30 HPY--VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------R-KNFIAEFFEADPCAENFETQM   99 (357)
Q Consensus        30 ~~~--~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-------~-~~~~v~f~~~D~~~~~~~~~l   99 (357)
                      .++  .+|||++||+|.++..++..+. +|+++|+++.+.+.+++..+..       + ...+++++++|+...     +
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~-----L  158 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA-----L  158 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH-----S
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHH-----H
Confidence            355  8999999999999988887755 8999999998766655543211       0 113689999997541     1


Q ss_pred             hhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~  157 (357)
                      .....+||+|++.-.++.-  ..   ..++++..+.|++.+   +..++.+.+.+...
T Consensus       159 ~~~~~~fDvV~lDP~y~~~--~~---saavkk~~~~lr~l~---~~~~~~~~ll~~a~  208 (258)
T 2oyr_A          159 TDITPRPQVVYLDPMFPHK--QK---SALVKKEMRVFQSLV---GPDLDADGLLEPAR  208 (258)
T ss_dssp             TTCSSCCSEEEECCCCCCC--CC--------HHHHHHHHHS---CCCTTGGGGHHHHH
T ss_pred             HhCcccCCEEEEcCCCCCc--cc---chHHHHHHHHHHHhh---cCCccHHHHHHHHH
Confidence            1112469999998755541  11   133444444554433   23666666665554

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.11  E-value=2e-06  Score=83.34  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=76.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-----------------cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC-
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-----------------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-   92 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-----------------~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~-   92 (357)
                      ...+|+|+||++|..+......                 +--+|+..|+.....+..-+.........+..|+.+...+ 
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            3468999999999765432211                 1236889999888888776665431100023555554433 


Q ss_pred             --CchhhhhhhcCCcccEEEEccchhhccCC-----------------------------HHHHHHHHHHHHhcccCCcE
Q 018352           93 --ENFETQMQEKANQADLVCCFQHLQMCFET-----------------------------EERARRLLQNVSSLLKPGGY  141 (357)
Q Consensus        93 --~~~~~~l~~~~~~FDlV~~~~~lh~~fes-----------------------------~~~~~~~L~~i~~~LkpGG~  141 (357)
                        ..+      +.+++|+|.++.++||+-.-                             ..+...+|+..++.|+|||+
T Consensus       131 y~rlf------p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~  204 (359)
T 1m6e_X          131 YGRLF------PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGR  204 (359)
T ss_dssp             SSCCS------CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCE
T ss_pred             hhccC------CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence              333      57899999999999995210                             24567789999999999999


Q ss_pred             EEEEeC
Q 018352          142 FLGITP  147 (357)
Q Consensus       142 fi~t~p  147 (357)
                      +++++.
T Consensus       205 mvl~~~  210 (359)
T 1m6e_X          205 MVLTIL  210 (359)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            998853

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.99  E-value=6.4e-06  Score=69.60  Aligned_cols=87  Identities=16%  Similarity=0.140  Sum_probs=59.5

Q ss_pred             CCCCEEEEECCCCC-hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAG-VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G-~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||||||.| ..+..++......|+++|+++.+++                |++.|+++..+..     -..||+
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~-----Y~~~DL   92 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPRMEI-----YRGAAL   92 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCCHHH-----HTTEEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCcccc-----cCCcCE
Confidence            45679999999999 4666666534458999999987665                7889998855420     147999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |.+..       ...++...+.++++.+  |.-+++..
T Consensus        93 IYsir-------PP~El~~~i~~lA~~v--~adliI~p  121 (153)
T 2k4m_A           93 IYSIR-------PPAEIHSSLMRVADAV--GARLIIKP  121 (153)
T ss_dssp             EEEES-------CCTTTHHHHHHHHHHH--TCEEEEEC
T ss_pred             EEEcC-------CCHHHHHHHHHHHHHc--CCCEEEEc
Confidence            95433       3444555666666644  34566663

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.96  E-value=2.7e-05  Score=72.98  Aligned_cols=113  Identities=15%  Similarity=0.075  Sum_probs=69.9

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      .++.++.+||||||+.|+.+..++.. +...|+|+|++..+...... ..  ....++.....++....+      ....
T Consensus        77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~--~~~~~iv~~~~~~di~~l------~~~~  147 (300)
T 3eld_A           77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQ--TLGWNIVKFKDKSNVFTM------PTEP  147 (300)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CC--BTTGGGEEEECSCCTTTS------CCCC
T ss_pred             CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-cc--ccCCceEEeecCceeeec------CCCC
Confidence            45678999999999999999888764 56689999998543110000 00  001122222222211112      3578


Q ss_pred             ccEEEEccchhhccCCHHHH--HHHHHHHHhcccCC-cEEEEEeCC
Q 018352          106 ADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPG-GYFLGITPD  148 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~--~~~L~~i~~~LkpG-G~fi~t~pd  148 (357)
                      +|+|+|..+.+.-....+..  ..+|.-+.++|+|| |.|++-+..
T Consensus       148 ~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          148 SDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             cCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            99999977655100011222  34578888999999 999999877

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.90  E-value=2.4e-05  Score=72.36  Aligned_cols=122  Identities=13%  Similarity=0.174  Sum_probs=71.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-------cC------CeEEEEeCCh---HHHHH-----------HHHHhHh-------
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-------LI------ANYIGIDVAT---SGIGE-----------ARDTWEN-------   76 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-------~~------~~v~GiDiS~---~~l~~-----------A~~r~~~-------   76 (357)
                      +..+|||+|||+|..+..+...       ..      .+|+++|..+   ++++.           |++..+.       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4579999999999766553331       21      4899999766   55553           3444332       


Q ss_pred             ------cCCCceeEEEEcCCCCCchhhhhhh-cCCcccEEEEc-cchhhccCCHH-HHHHHHHHHHhcccCCcEEEEEeC
Q 018352           77 ------QRKNFIAEFFEADPCAENFETQMQE-KANQADLVCCF-QHLQMCFETEE-RARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus        77 ------~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FDlV~~~-~~lh~~fes~~-~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                            .....+++++.+|+... + ..+.. ....||+|+.- |+-.-   +.+ -...+++.+.++|+|||+|+. ..
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~-l-~~~~~~~~~~~D~iflD~fsp~~---~p~lw~~~~l~~l~~~L~pGG~l~t-ys  213 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINEL-I-SQLDDSLNQKVDAWFLDGFAPAK---NPDMWTQNLFNAMARLARPGGTLAT-FT  213 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHH-G-GGSCGGGTTCEEEEEECSSCTTT---CGGGCCHHHHHHHHHHEEEEEEEEE-SC
T ss_pred             hhheeccCCceEEEEEECcHHHH-H-hhcccccCCeEEEEEECCCCccc---ChhhcCHHHHHHHHHHcCCCcEEEE-Ee
Confidence                  01124677888887541 1 11110 01379999874 22110   000 024689999999999999883 33


Q ss_pred             CchHHHHHHHH
Q 018352          148 DSSTIWAKYQK  158 (357)
Q Consensus       148 d~~~i~~~~~~  158 (357)
                      ....+.+.+..
T Consensus       214 aa~~vrr~L~~  224 (257)
T 2qy6_A          214 SAGFVRRGLQE  224 (257)
T ss_dssp             CBHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            33455555543

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.89  E-value=4.7e-05  Score=71.13  Aligned_cols=77  Identities=10%  Similarity=0.016  Sum_probs=59.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCccc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FD  107 (357)
                      ..++..+||.+||.|+++..++.. .++|+|+|.++.+++.|++ +..    .++.++++|....  ...+.. ...++|
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l--~~~L~~~g~~~vD   91 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHL--KRHLAALGVERVD   91 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGH--HHHHHHTTCSCEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchH--HHHHHHcCCCCcC
Confidence            457889999999999999999887 5699999999999999998 654    2789999987653  222221 125799


Q ss_pred             EEEEcc
Q 018352          108 LVCCFQ  113 (357)
Q Consensus       108 lV~~~~  113 (357)
                      .|++..
T Consensus        92 gIL~DL   97 (285)
T 1wg8_A           92 GILADL   97 (285)
T ss_dssp             EEEEEC
T ss_pred             EEEeCC
Confidence            998643

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.78  E-value=0.00014  Score=73.89  Aligned_cols=116  Identities=15%  Similarity=0.050  Sum_probs=77.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--------------cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--------------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--------------~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~   96 (357)
                      ++.+|+|-+||+|+++......              ....++|+|+++.+...|+-..--.+.. ...+..+|....+..
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~~~I~~~dtL~~~~~  295 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-YPRIDPENSLRFPLR  295 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-CCEEECSCTTCSCGG
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-cccccccccccCchh
Confidence            4679999999999998765432              1246999999999999998765433322 345678887665442


Q ss_pred             hhhhhcCCcccEEEEccchhhc------------cCCHHHHHHHHHHHHhccc-------CCcEEEEEeCCc
Q 018352           97 TQMQEKANQADLVCCFQHLQMC------------FETEERARRLLQNVSSLLK-------PGGYFLGITPDS  149 (357)
Q Consensus        97 ~~l~~~~~~FDlV~~~~~lh~~------------fes~~~~~~~L~~i~~~Lk-------pGG~fi~t~pd~  149 (357)
                      ...  ...+||+|+++--+...            ..+.+..-.++..+.+.||       +||++.+.+|++
T Consensus       296 ~~~--~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g  365 (530)
T 3ufb_A          296 EMG--DKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNG  365 (530)
T ss_dssp             GCC--GGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHH
T ss_pred             hhc--ccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecch
Confidence            211  23579999997644211            1111122346777777776       799999998875

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.74  E-value=9.5e-05  Score=69.44  Aligned_cols=54  Identities=15%  Similarity=0.241  Sum_probs=44.9

Q ss_pred             HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc
Q 018352           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (357)
Q Consensus        23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~   77 (357)
                      .+|..+..++..|||++||+|..+......+ .+++|+|+++.+++.|++|++..
T Consensus       227 ~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g-~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          227 RLVRMFSFVGDVVLDPFAGTGTTLIAAARWG-RRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHCCTTCEEEETTCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHHh
Confidence            4455556788999999999998777766655 49999999999999999998764

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.71  E-value=0.00028  Score=66.02  Aligned_cols=107  Identities=12%  Similarity=-0.023  Sum_probs=76.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHh------cCCeEEEEeCCh--------------------------HHHHHHHHHhHhcC
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA------LIANYIGIDVAT--------------------------SGIGEARDTWENQR   78 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~------~~~~v~GiDiS~--------------------------~~l~~A~~r~~~~~   78 (357)
                      ....|||+||.+|..+..++..      ...+++++|..+                          .+++.+++.++..+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            3569999999999877666543      256899999642                          14677888887765


Q ss_pred             C-CceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352           79 K-NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus        79 ~-~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      . ..+++++.+|+.+. + ..+  ..++||+|.+-... |     +.....|+.+...|+|||++++.-.
T Consensus       186 l~~~~I~li~Gda~et-L-~~~--~~~~~d~vfIDaD~-y-----~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDT-L-PTA--PIDTLAVLRMDGDL-Y-----ESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             CCSTTEEEEESCHHHH-S-TTC--CCCCEEEEEECCCS-H-----HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CCcCceEEEEeCHHHH-H-hhC--CCCCEEEEEEcCCc-c-----ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            5 25799999997431 1 111  24689999876532 3     3356789999999999999988744

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.67  E-value=0.00024  Score=68.81  Aligned_cols=95  Identities=7%  Similarity=-0.120  Sum_probs=63.8

Q ss_pred             HcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +.+.++.+||||||+.|+.+..+.+.+ .+|+|||+.+-.     .....   ..+++++++|+.....      ....|
T Consensus       207 ~~l~~G~~vlDLGAaPGGWT~~l~~rg-~~V~aVD~~~l~-----~~l~~---~~~V~~~~~d~~~~~~------~~~~~  271 (375)
T 4auk_A          207 ERLANGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNGPMA-----QSLMD---TGQVTWLREDGFKFRP------TRSNI  271 (375)
T ss_dssp             HHSCTTCEEEEETCTTCHHHHHHHHTT-CEEEEECSSCCC-----HHHHT---TTCEEEECSCTTTCCC------CSSCE
T ss_pred             ccCCCCCEEEEeCcCCCHHHHHHHHCC-CEEEEEEhhhcC-----hhhcc---CCCeEEEeCccccccC------CCCCc
Confidence            346789999999999999998887766 499999987421     11111   1278999999877554      35789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGY  141 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~  141 (357)
                      |+|+|-.+.+     ......++......+..++.
T Consensus       272 D~vvsDm~~~-----p~~~~~l~~~wl~~~~~~~a  301 (375)
T 4auk_A          272 SWMVCDMVEK-----PAKVAALMAQWLVNGWCRET  301 (375)
T ss_dssp             EEEEECCSSC-----HHHHHHHHHHHHHTTSCSEE
T ss_pred             CEEEEcCCCC-----hHHhHHHHHHHHhccccceE
Confidence            9999977433     33343444444444444443

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.67  E-value=0.00023  Score=66.62  Aligned_cols=118  Identities=21%  Similarity=0.189  Sum_probs=74.6

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEc-CCCCCchhhhhhhcCCc
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEKANQ  105 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~-D~~~~~~~~~l~~~~~~  105 (357)
                      ++.++.+||||||++|+.+...+.. +...|+|+|+-..--+.= ...++.+. .-+.|... |+....        ..+
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv~~l~--------~~~  160 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDVFYRP--------SEC  160 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCTTSSC--------CCC
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCHhhCC--------CCC
Confidence            4568889999999999988865554 566899999985411000 00001111 13777777 765432        367


Q ss_pred             ccEEEEccchhhccCC-H-H--HHHHHHHHHHhcccCC-cEEEEEeCCc--hHHHHHHH
Q 018352          106 ADLVCCFQHLQMCFET-E-E--RARRLLQNVSSLLKPG-GYFLGITPDS--STIWAKYQ  157 (357)
Q Consensus       106 FDlV~~~~~lh~~fes-~-~--~~~~~L~~i~~~LkpG-G~fi~t~pd~--~~i~~~~~  157 (357)
                      +|+|+|--+ .. -.+ . +  ....+|.-+.+.|++| |-|++-+...  ..+.+++.
T Consensus       161 ~D~ivcDig-eS-s~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~  217 (321)
T 3lkz_A          161 CDTLLCDIG-ES-SSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKME  217 (321)
T ss_dssp             CSEEEECCC-CC-CSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHH
T ss_pred             CCEEEEECc-cC-CCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHH
Confidence            999999775 22 112 1 2  2234778888999999 8999887666  66655554

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.49  E-value=0.00062  Score=61.85  Aligned_cols=117  Identities=20%  Similarity=0.145  Sum_probs=73.4

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEc-CCCCCchhhhhhhcCCc
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEKANQ  105 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~-D~~~~~~~~~l~~~~~~  105 (357)
                      ++.++.+||||||++|+.+...+.. +..+|+|+|+-..--+.= ...+..+. ..++|..+ |+...        +..+
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gw-n~v~fk~gvDv~~~--------~~~~  144 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGW-NIVKLMSGKDVFYL--------PPEK  144 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTT-TSEEEECSCCGGGC--------CCCC
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCc-CceEEEeccceeec--------CCcc
Confidence            3568889999999999988866554 566899999975421000 00000111 25889988 87432        2467


Q ss_pred             ccEEEEccchhhccCC--HH--HHHHHHHHHHhcccCCcEEEEEeCCc--hHHHHHHH
Q 018352          106 ADLVCCFQHLQMCFET--EE--RARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ  157 (357)
Q Consensus       106 FDlV~~~~~lh~~fes--~~--~~~~~L~~i~~~LkpGG~fi~t~pd~--~~i~~~~~  157 (357)
                      +|+|+|-.+=-  -.+  .+  ...++|+-+.+.|++ |-|++-+...  ..+.+++.
T Consensus       145 ~DtllcDIgeS--s~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~  199 (267)
T 3p8z_A          145 CDTLLCDIGES--SPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLE  199 (267)
T ss_dssp             CSEEEECCCCC--CSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHH
T ss_pred             ccEEEEecCCC--CCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHH
Confidence            99999976431  112  12  223478888899999 7888775554  33555553

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.45  E-value=7.3e-05  Score=68.72  Aligned_cols=113  Identities=20%  Similarity=0.138  Sum_probs=66.8

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcC-CCce---eEEEEc-CCCCCchhhhhhh
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR-KNFI---AEFFEA-DPCAENFETQMQE  101 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~-~~~~---v~f~~~-D~~~~~~~~~l~~  101 (357)
                      +++++.+||||||+.|+-+...+.. +...+.|.++.... .     ..... ....   +.|.++ |++.  +      
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-----~~P~~~~~~Gv~~i~~~~G~Df~~--~------  135 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-----EEPMLMQSYGWNIVTMKSGVDVFY--K------  135 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-----CCCCCCCSTTGGGEEEECSCCGGG--S------
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-----cCCCcccCCCceEEEeeccCCccC--C------
Confidence            6789999999999999877665543 23344555555331 0     00000 0012   244546 8765  2      


Q ss_pred             cCCcccEEEEccchhhccCCHHHHH--HHHHHHHhcccCCc-EEEEEeCCc--hHHHH
Q 018352          102 KANQADLVCCFQHLQMCFETEERAR--RLLQNVSSLLKPGG-YFLGITPDS--STIWA  154 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes~~~~~--~~L~~i~~~LkpGG-~fi~t~pd~--~~i~~  154 (357)
                      ...++|+|+|-.+-..-....++++  .+|.-+.++|+||| .|++-+...  ..+.+
T Consensus       136 ~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~  193 (269)
T 2px2_A          136 PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIE  193 (269)
T ss_dssp             CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHH
T ss_pred             CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHH
Confidence            3468999999764321111122222  26777779999999 898886665  55544

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.38  E-value=0.00022  Score=66.72  Aligned_cols=112  Identities=16%  Similarity=0.073  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHcCC-------CCCEEEEECC------CCChhH-HHHHHhcC-CeEEEEeCChHHHHHHHHHhHhcCCC
Q 018352           16 LYEFAKTALIKIYSH-------PYVTVCDLYC------GAGVDV-DKWETALI-ANYIGIDVATSGIGEARDTWENQRKN   80 (357)
Q Consensus        16 ~~nwvks~Li~~~~~-------~~~~VLDlGC------G~G~~l-~k~~~~~~-~~v~GiDiS~~~l~~A~~r~~~~~~~   80 (357)
                      +.|.+|..-+..|+.       .+++|||+|+      -.|+.. ..|  .+. +.++++|+.+-..         .   
T Consensus        87 ~~nv~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~--~p~g~~VVavDL~~~~s---------d---  152 (344)
T 3r24_A           87 MMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQW--LPTGTLLVDSDLNDFVS---------D---  152 (344)
T ss_dssp             CHHHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHH--SCTTCEEEEEESSCCBC---------S---
T ss_pred             EeeHHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHh--CCCCcEEEEeeCccccc---------C---
Confidence            568889888888763       5799999997      445422 222  232 4999999986321         1   


Q ss_pred             ceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhc-------cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           81 FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        81 ~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~-------fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .+ .++++|+....       ..++||+|++-.+-.-+       ..+..-.+.++.-+.+.|+|||.|++-+...
T Consensus       153 a~-~~IqGD~~~~~-------~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG  220 (344)
T 3r24_A          153 AD-STLIGDCATVH-------TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  220 (344)
T ss_dssp             SS-EEEESCGGGEE-------ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             CC-eEEEccccccc-------cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence            12 45999975422       24789999985432110       0112235667888889999999999886554

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.16  E-value=0.00098  Score=61.23  Aligned_cols=55  Identities=22%  Similarity=0.275  Sum_probs=45.1

Q ss_pred             HHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc
Q 018352           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (357)
Q Consensus        22 s~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~   77 (357)
                      ..+|..+..++..|||..||+|..+......+ .+++|+|+++.+++.|++|++..
T Consensus       203 ~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~~~~~~~~~r~~~~  257 (260)
T 1g60_A          203 ERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLNQL  257 (260)
T ss_dssp             HHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-
T ss_pred             HHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhc
Confidence            34556667789999999999997777766555 59999999999999999998754

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.13  E-value=0.00019  Score=84.84  Aligned_cols=104  Identities=21%  Similarity=0.241  Sum_probs=57.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-c-----CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC-chhhhhhhc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-L-----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEK  102 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~-----~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~-~~~~~l~~~  102 (357)
                      .+..+||+||.|+|+.+..+... .     ...|+.+|+|+...+.|+++++..    +++....|.... .+      .
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~------~ 1308 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPG------S 1308 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC--------
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccC------C
Confidence            35789999999999876655443 1     347999999999988888887653    344333343321 12      2


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      ...||+|++..++|-    ..+....|++++++|||||++++..+
T Consensus      1309 ~~~ydlvia~~vl~~----t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1309 LGKADLLVCNCALAT----LGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             ---CCEEEEECC------------------------CCEEEEEEC
T ss_pred             CCceeEEEEcccccc----cccHHHHHHHHHHhcCCCcEEEEEec
Confidence            357999999998886    23466789999999999999887643

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.03  E-value=0.0065  Score=58.03  Aligned_cols=112  Identities=14%  Similarity=0.168  Sum_probs=78.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcC--------------------CCceeEEEEc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--------------------KNFIAEFFEA   88 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~--------------------~~~~v~f~~~   88 (357)
                      .+...|+.||||...-...+... +...++-||. ++.++.-++.++...                    ...+..++.+
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            35678999999998666655543 4447778888 777777666665431                    0136789999


Q ss_pred             CCCCCchhhh-hhh--cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           89 DPCAENFETQ-MQE--KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        89 D~~~~~~~~~-l~~--~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+.+...... +..  ......++++-.+++| + +.+...++++.+.+.+ |+|.++..
T Consensus       175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~Y-L-~~~~~~~ll~~ia~~~-~~~~~v~~  231 (334)
T 1rjd_A          175 DLNDITETTRLLDVCTKREIPTIVISECLLCY-M-HNNESQLLINTIMSKF-SHGLWISY  231 (334)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGG-S-CHHHHHHHHHHHHHHC-SSEEEEEE
T ss_pred             CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhC-C-CHHHHHHHHHHHHhhC-CCcEEEEE
Confidence            9987433211 111  2356788999999999 5 6888999999999988 77777533

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.01  E-value=0.0011  Score=63.39  Aligned_cols=77  Identities=16%  Similarity=0.060  Sum_probs=56.9

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc--CCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--ANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~--~~~  105 (357)
                      .++..++|..||.|+++..++..  +.++|+|+|.++.+++.|+ ++.    ..++.+++++...  +...+...  .++
T Consensus        56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~----~~Rv~lv~~nF~~--l~~~L~~~g~~~~  128 (347)
T 3tka_A           56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID----DPRFSIIHGPFSA--LGEYVAERDLIGK  128 (347)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC----CTTEEEEESCGGG--HHHHHHHTTCTTC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc----CCcEEEEeCCHHH--HHHHHHhcCCCCc
Confidence            57899999999999999998876  4579999999999999984 442    2368888888654  32222221  136


Q ss_pred             ccEEEEcc
Q 018352          106 ADLVCCFQ  113 (357)
Q Consensus       106 FDlV~~~~  113 (357)
                      +|.|+...
T Consensus       129 vDgILfDL  136 (347)
T 3tka_A          129 IDGILLDL  136 (347)
T ss_dssp             EEEEEEEC
T ss_pred             ccEEEECC
Confidence            88887654

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.58  E-value=0.047  Score=51.51  Aligned_cols=110  Identities=10%  Similarity=0.014  Sum_probs=79.2

Q ss_pred             CEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcC--CCceeEEEEcCCCCCchhhhhhhc---CCc
Q 018352           33 VTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK---ANQ  105 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~l~~~---~~~  105 (357)
                      ..|++||||-=  +..+... + ..+++=+| -++.++..++.+.+..  ...+..++.+|+.. .....+...   ...
T Consensus       104 ~QvV~LGaGlD--Tra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~  179 (310)
T 2uyo_A          104 RQFVILASGLD--SRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSA  179 (310)
T ss_dssp             CEEEEETCTTC--CHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred             CeEEEeCCCCC--chhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCC
Confidence            57999999964  4433322 2 35899999 5899998888886421  13367889999987 544433221   134


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      --++++-.++|| + +.++...+++.+...+.||+++++...+
T Consensus       180 Pt~~i~Egvl~Y-l-~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          180 RTAWLAEGLLMY-L-PATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             CEEEEECSCGGG-S-CHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CEEEEEechHhh-C-CHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            557778888999 6 5678899999999999999999988544

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.43  E-value=0.016  Score=56.15  Aligned_cols=78  Identities=15%  Similarity=0.062  Sum_probs=57.9

Q ss_pred             CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh--hcCCcccEEE
Q 018352           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQADLVC  110 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~--~~~~~FDlV~  110 (357)
                      .+|+||.||.|+...-+..+++..+.++|+++.+++..+.++.      +..++++|+..........  .....+|+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            5899999999999999988898788899999998887766653      3567889987654322110  0246799999


Q ss_pred             Eccchh
Q 018352          111 CFQHLQ  116 (357)
Q Consensus       111 ~~~~lh  116 (357)
                      ...-.+
T Consensus        77 ggpPCQ   82 (376)
T 3g7u_A           77 GGPPCQ   82 (376)
T ss_dssp             ECCCCC
T ss_pred             ecCCCC
Confidence            765444

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.03  E-value=0.012  Score=56.33  Aligned_cols=77  Identities=16%  Similarity=0.128  Sum_probs=55.7

Q ss_pred             CCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ..+||||.||.|+....+..++  +..+.++|+++.+++..+.++..      ..++.+|+....... +.  ...+|+|
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~-~~--~~~~D~l   72 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEE-FD--RLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHH-HH--HHCCSEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhH-cC--cCCcCEE
Confidence            3589999999999998888887  45799999999999988877643      346788887643211 11  1269999


Q ss_pred             EEccchhh
Q 018352          110 CCFQHLQM  117 (357)
Q Consensus       110 ~~~~~lh~  117 (357)
                      +..+-.+-
T Consensus        73 ~~gpPCq~   80 (343)
T 1g55_A           73 LMSPPCQP   80 (343)
T ss_dssp             EECCC---
T ss_pred             EEcCCCcc
Confidence            98765443

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.63  E-value=0.027  Score=53.47  Aligned_cols=72  Identities=15%  Similarity=0.050  Sum_probs=54.3

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      ..+||||.||.|+....+..+++..+.++|+++.+++..+.++...        ..+|+......     .-..+|+|+.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~--------~~~Di~~~~~~-----~~~~~D~l~~   77 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEK-----TIPDHDILCA   77 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGG-----GSCCCSEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC--------CcCCHHHcCHh-----hCCCCCEEEE
Confidence            4799999999999999998889888999999999998887776432        15777653321     1235999987


Q ss_pred             ccchh
Q 018352          112 FQHLQ  116 (357)
Q Consensus       112 ~~~lh  116 (357)
                      .+-.+
T Consensus        78 gpPCQ   82 (327)
T 2c7p_A           78 GFPCQ   82 (327)
T ss_dssp             ECCCT
T ss_pred             CCCCC
Confidence            65443

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=95.43  E-value=0.033  Score=53.52  Aligned_cols=59  Identities=19%  Similarity=0.204  Sum_probs=49.3

Q ss_pred             CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc
Q 018352           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~   94 (357)
                      +..|||||.|.|..+..++.. ...+++++++++.++...++... .   .+++++.+|+...+
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~-~---~~l~ii~~D~l~~~  118 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE-G---SPLQILKRDPYDWS  118 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT-T---SSCEEECSCTTCHH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhcc-C---CCEEEEECCccchh
Confidence            589999999999999999875 45689999999999998888762 1   27899999996643

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.42  E-value=0.024  Score=53.62  Aligned_cols=55  Identities=13%  Similarity=0.215  Sum_probs=44.9

Q ss_pred             HHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc
Q 018352           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (357)
Q Consensus        22 s~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~   77 (357)
                      ..+|..+..++..|||.-||+|..+......+ .+++|+|+++..++.|++|++..
T Consensus       243 ~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~g-r~~ig~e~~~~~~~~~~~r~~~~  297 (323)
T 1boo_A          243 EFFIRMLTEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDN  297 (323)
T ss_dssp             HHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCS
T ss_pred             HHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHhc
Confidence            34556667789999999999997777665555 49999999999999999998643

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.18  E-value=0.039  Score=52.48  Aligned_cols=77  Identities=12%  Similarity=0.100  Sum_probs=56.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcC--CeE-EEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALI--ANY-IGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~--~~v-~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ...+|+||.||.|+...-+..+++  ..+ .++|+++.+++..+.++...       ++.+|+....... +.  ...+|
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~-i~--~~~~D   78 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQ-IE--SLNCN   78 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHH-HH--HTCCC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHH-hc--cCCCC
Confidence            456899999999999998888875  566 79999999888777766421       5678887765422 21  13699


Q ss_pred             EEEEccchhh
Q 018352          108 LVCCFQHLQM  117 (357)
Q Consensus       108 lV~~~~~lh~  117 (357)
                      +++..+-.+-
T Consensus        79 il~ggpPCQ~   88 (327)
T 3qv2_A           79 TWFMSPPCQP   88 (327)
T ss_dssp             EEEECCCCTT
T ss_pred             EEEecCCccC
Confidence            9997654443

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.15  E-value=0.04  Score=52.15  Aligned_cols=55  Identities=25%  Similarity=0.281  Sum_probs=43.8

Q ss_pred             HHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCCh---HHHHHHHHHhHhc
Q 018352           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVAT---SGIGEARDTWENQ   77 (357)
Q Consensus        22 s~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~---~~l~~A~~r~~~~   77 (357)
                      ..+|..+..++..|||.-||+|..+......+ .+++|+|+++   ..++.|++|++..
T Consensus       233 ~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          233 ERLVRALSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             HHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCCCCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHHHHHHHHHHHc
Confidence            34566667889999999999997777766655 4899999999   9999999998643

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=95.01  E-value=0.0084  Score=55.87  Aligned_cols=107  Identities=8%  Similarity=-0.016  Sum_probs=74.8

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      +..+||+-+|+|......+. +..+++.+|.++..++..++.++.   ..++.++..|+... + ..+..+..+||+|++
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~-L-~~l~~~~~~fdLVfi  165 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSK-L-NALLPPPEKRGLIFI  165 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHH-H-HHHCSCTTSCEEEEE
T ss_pred             CCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHH-H-HHhcCCCCCccEEEE
Confidence            45789999999988777666 558999999999999888777654   23688888886431 1 111123457999998


Q ss_pred             ccchhhccCCHHHHHHHHHHHHh--cccCCcEEEEEeCC
Q 018352          112 FQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPD  148 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~--~LkpGG~fi~t~pd  148 (357)
                      --.    ++..+...++++.+.+  .+.++|++++-.|-
T Consensus       166 DPP----Ye~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi  200 (283)
T 2oo3_A          166 DPS----YERKEEYKEIPYAIKNAYSKFSTGLYCVWYPV  200 (283)
T ss_dssp             CCC----CCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred             CCC----CCCCcHHHHHHHHHHHhCccCCCeEEEEEEec
Confidence            763    3323345666666665  45689999988543

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=94.81  E-value=0.063  Score=50.39  Aligned_cols=72  Identities=14%  Similarity=0.026  Sum_probs=54.2

Q ss_pred             CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEc
Q 018352           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~  112 (357)
                      ++||||-||.|+...-+..+++.-+.++|+++.+++.-+.++       ...++.+|+......     .-...|+++..
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~-------~~~~~~~DI~~i~~~-----~~~~~D~l~gg   68 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-------SAKLIKGDISKISSD-----EFPKCDGIIGG   68 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC-------CSEEEESCGGGCCGG-----GSCCCSEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-------CCCcccCChhhCCHh-----hCCcccEEEec
Confidence            479999999999999998889878889999998877655554       235688998765432     12468999865


Q ss_pred             cchh
Q 018352          113 QHLQ  116 (357)
Q Consensus       113 ~~lh  116 (357)
                      +-.+
T Consensus        69 pPCQ   72 (331)
T 3ubt_Y           69 PPSQ   72 (331)
T ss_dssp             CCGG
T ss_pred             CCCC
Confidence            5333

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=94.61  E-value=0.11  Score=48.63  Aligned_cols=77  Identities=17%  Similarity=0.091  Sum_probs=56.1

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCe--EEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIAN--YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~--v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ...+|+||.||.|+....+..+++..  +.++|+++.+++.-+.++.      ...++.+|+....... +. ..+.+|+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~-i~-~~~~~Dl   86 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKH-IQ-EWGPFDL   86 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHH-HH-HTCCCSE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHH-hc-ccCCcCE
Confidence            45689999999999998888888766  7999999998876655543      2357889987754321 22 1257999


Q ss_pred             EEEccch
Q 018352          109 VCCFQHL  115 (357)
Q Consensus       109 V~~~~~l  115 (357)
                      ++..+-.
T Consensus        87 l~ggpPC   93 (295)
T 2qrv_A           87 VIGGSPC   93 (295)
T ss_dssp             EEECCCC
T ss_pred             EEecCCC
Confidence            9976533

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=94.36  E-value=0.34  Score=44.38  Aligned_cols=119  Identities=13%  Similarity=0.100  Sum_probs=73.6

Q ss_pred             HHHHHcCCCCCEEEEECCCCChhHHHHHHh--------cCCeEEEEe-----CCh----------------------HHH
Q 018352           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETA--------LIANYIGID-----VAT----------------------SGI   67 (357)
Q Consensus        23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~--------~~~~v~GiD-----iS~----------------------~~l   67 (357)
                      .|.++...-...|+|+||-.|+.+..++..        ...+++|+|     ...                      +.+
T Consensus        61 ~l~~~i~~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l  140 (257)
T 3tos_A           61 ALYRQVLDVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYL  140 (257)
T ss_dssp             HHHHHTTTSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHH
T ss_pred             HHHHHhhCCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHH
Confidence            344444454579999999999877776542        246899999     321                      112


Q ss_pred             HHHHHHh---HhcCC-CceeEEEEcCCCCCchhhhhhh-cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEE
Q 018352           68 GEARDTW---ENQRK-NFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF  142 (357)
Q Consensus        68 ~~A~~r~---~~~~~-~~~v~f~~~D~~~~~~~~~l~~-~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~f  142 (357)
                      ++..+..   +..+. ..+++++.+++... +...+.. +..+||+|.+-.- +|     +.....++.+...|+|||++
T Consensus       141 ~~~l~~~~~~~~~g~~~~~i~li~G~~~dT-L~~~l~~~~~~~~dlv~ID~D-~Y-----~~t~~~le~~~p~l~~GGvI  213 (257)
T 3tos_A          141 KEVLDAHECSDFFGHVTQRSVLVEGDVRET-VPRYLAENPQTVIALAYFDLD-LY-----EPTKAVLEAIRPYLTKGSIV  213 (257)
T ss_dssp             HHHHHHHHTTSTTTTSCCSEEEEESCHHHH-HHHHHHHCTTCCEEEEEECCC-CH-----HHHHHHHHHHGGGEEEEEEE
T ss_pred             HHHHHHHhhhhhcCCCCCcEEEEEecHHHH-HHHHHHhCCCCceEEEEEcCc-cc-----chHHHHHHHHHHHhCCCcEE
Confidence            2221111   11122 24799999987431 2111111 2457999987663 23     34567889999999999999


Q ss_pred             EEEeCC
Q 018352          143 LGITPD  148 (357)
Q Consensus       143 i~t~pd  148 (357)
                      ++.-.+
T Consensus       214 v~DD~~  219 (257)
T 3tos_A          214 AFDELD  219 (257)
T ss_dssp             EESSTT
T ss_pred             EEcCCC
Confidence            988543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.34  E-value=0.31  Score=39.62  Aligned_cols=103  Identities=10%  Similarity=-0.007  Sum_probs=65.1

Q ss_pred             CCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        32 ~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ..+|+=+|||. |..+.+.+......|+++|.+++.++.+++    .    .+.++.+|..........  .-..+|+|+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~----g~~~i~gd~~~~~~l~~a--~i~~ad~vi   76 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R----GVRAVLGNAANEEIMQLA--HLECAKWLI   76 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEESCTTSHHHHHHT--TGGGCSEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c----CCCEEECCCCCHHHHHhc--CcccCCEEE
Confidence            35799999986 555555555544599999999998877654    2    356789998775442221  124689887


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~  151 (357)
                      +..      .+...... +-...+.+.|+..++....+...
T Consensus        77 ~~~------~~~~~n~~-~~~~a~~~~~~~~iiar~~~~~~  110 (140)
T 3fwz_A           77 LTI------PNGYEAGE-IVASARAKNPDIEIIARAHYDDE  110 (140)
T ss_dssp             ECC------SCHHHHHH-HHHHHHHHCSSSEEEEEESSHHH
T ss_pred             EEC------CChHHHHH-HHHHHHHHCCCCeEEEEECCHHH
Confidence            643      12222222 33355667788887777666543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.22  E-value=0.13  Score=48.38  Aligned_cols=98  Identities=13%  Similarity=0.074  Sum_probs=63.5

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      +.++.+||-.|||. |..+..+++....+|+++|.+++.++.+++.-.      . ..  .|....++...+....+.+|
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa------~-~~--i~~~~~~~~~~~~~~~g~~d  234 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGA------E-VA--VNARDTDPAAWLQKEIGGAH  234 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC------S-EE--EETTTSCHHHHHHHHHSSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCC------C-EE--EeCCCcCHHHHHHHhCCCCC
Confidence            45789999999975 666677777655599999999998888765321      1 11  23233333332222224789


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+....      .    ...++.+.++|++||+++..
T Consensus       235 ~vid~~g------~----~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          235 GVLVTAV------S----PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             EEEESSC------C----HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEEeCC------C----HHHHHHHHHHhccCCEEEEe
Confidence            9875431      1    12467777899999999866

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=94.06  E-value=0.069  Score=50.83  Aligned_cols=73  Identities=11%  Similarity=0.177  Sum_probs=53.2

Q ss_pred             CEEEEECCCCChhHHHHHHhcC--CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           33 VTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~--~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      .+|+|+.||.|+...-+..++.  ..+.++|+++.+++.-+.++..      ..++.+|+....... ++  ...+|+++
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~-~~--~~~~D~l~   74 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQV-IK--KWNVDTIL   74 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHH-HH--HTTCCEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHH-hc--cCCCCEEE
Confidence            5899999999999988888876  5688999999988777666542      245678887654321 21  23699998


Q ss_pred             Eccc
Q 018352          111 CFQH  114 (357)
Q Consensus       111 ~~~~  114 (357)
                      ..+-
T Consensus        75 ggpP   78 (333)
T 4h0n_A           75 MSPP   78 (333)
T ss_dssp             ECCC
T ss_pred             ecCC
Confidence            6553

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=93.91  E-value=0.18  Score=47.20  Aligned_cols=97  Identities=13%  Similarity=-0.037  Sum_probs=61.5

Q ss_pred             CCCCCEEEEECCC--CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC-Cchhhhhhh-cCC
Q 018352           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE-KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~-~~~~~~l~~-~~~  104 (357)
                      +.++.+||-.||+  .|..+..+++....+|+++|.+++.++.++ .+..     .   ...|..+ ..+...+.. ..+
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~-~~g~-----~---~~~d~~~~~~~~~~~~~~~~~  213 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGF-----D---AAFNYKTVNSLEEALKKASPD  213 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTC-----S---EEEETTSCSCHHHHHHHHCTT
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCC-----c---EEEecCCHHHHHHHHHHHhCC
Confidence            4578999999983  455555665654459999999998888773 3211     1   1234443 333222221 125


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+-           ..+..+.++|++||+++..
T Consensus       214 ~~d~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          214 GYDCYFDNVGG-----------EFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             CEEEEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred             CCeEEEECCCh-----------HHHHHHHHHHhcCCEEEEE
Confidence            79999865531           1367778999999999865

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=93.74  E-value=0.21  Score=47.53  Aligned_cols=98  Identities=12%  Similarity=0.088  Sum_probs=62.8

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~  105 (357)
                      +.++.+||-+|||. |..+..+++. +..+|+++|.+++.++.|++.-.      . .++  |....++...+.. ..+.
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa------~-~vi--~~~~~~~~~~~~~~~~gg  258 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA------T-HVI--NSKTQDPVAAIKEITDGG  258 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC------S-EEE--ETTTSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC------C-EEe--cCCccCHHHHHHHhcCCC
Confidence            45789999999875 5566666665 44479999999999888865421      1 122  2222233222221 1237


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+|+..-+      .    ...+..+.++|++||+++..
T Consensus       259 ~D~vid~~g------~----~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          259 VNFALESTG------S----PEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             EEEEEECSC------C----HHHHHHHHHTEEEEEEEEEC
T ss_pred             CcEEEECCC------C----HHHHHHHHHHHhcCCEEEEe
Confidence            999976442      1    13467778899999999866

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.64  E-value=0.15  Score=43.86  Aligned_cols=97  Identities=15%  Similarity=0.088  Sum_probs=59.7

Q ss_pred             CCCCCEEEEECCC--CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||..|++  .|..+..++.....+|+++|.+++.++.+++    .+.  ..   ..|.........+..  ...
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~--~~---~~d~~~~~~~~~~~~~~~~~  106 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV--EY---VGDSRSVDFADEILELTDGY  106 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC--SE---EEETTCSTHHHHHHHHTTTC
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC--CE---EeeCCcHHHHHHHHHHhCCC
Confidence            4578899999953  3555555555544589999999988776643    111  11   124433333222211  124


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+-           ..++.+.++|++||+++..
T Consensus       107 ~~D~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          107 GVDVVLNSLAG-----------EAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             CEEEEEECCCT-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             CCeEEEECCch-----------HHHHHHHHHhccCCEEEEE
Confidence            69999865421           2467788899999998865

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=92.73  E-value=0.26  Score=46.12  Aligned_cols=98  Identities=10%  Similarity=-0.076  Sum_probs=62.7

Q ss_pred             CCCCCEEEEECCC--CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 018352           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~  105 (357)
                      +.++.+||-.||+  -|..+..+++....+|+++|.+++-++.+.+.+..     .   ...|.....+...+.. ..+.
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~-----~---~~~~~~~~~~~~~~~~~~~~~  218 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGF-----D---GAIDYKNEDLAAGLKRECPKG  218 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC-----S---EEEETTTSCHHHHHHHHCTTC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC-----C---EEEECCCHHHHHHHHHhcCCC
Confidence            4578999999983  45566666666555999999999888776333211     1   1123333333332221 1357


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+|+...+-           ..+..+.++|++||+++..
T Consensus       219 ~d~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          219 IDVFFDNVGG-----------EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             EEEEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred             ceEEEECCCc-----------chHHHHHHHHhhCCEEEEE
Confidence            9999765421           2477788999999999866

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=92.58  E-value=0.26  Score=46.24  Aligned_cols=98  Identities=11%  Similarity=0.013  Sum_probs=61.4

Q ss_pred             CCCCCEEEEECCC--CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC-chhhhhhh-cCC
Q 018352           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQE-KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~-~~~~~l~~-~~~  104 (357)
                      +.++.+||-.||+  .|..+..+++....+|+++|.+++.++.+++.+..     . ..  .|.... .+...+.. ..+
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~-----~-~~--~d~~~~~~~~~~~~~~~~~  224 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGF-----D-DA--FNYKEESDLTAALKRCFPN  224 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCC-----S-EE--EETTSCSCSHHHHHHHCTT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC-----c-eE--EecCCHHHHHHHHHHHhCC
Confidence            3578999999983  45555666665445999999999888777543311     1 11  233321 22222211 125


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+-           ..++.+.++|++||+++..
T Consensus       225 ~~d~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          225 GIDIYFENVGG-----------KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             CEEEEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred             CCcEEEECCCH-----------HHHHHHHHHHhcCCEEEEE
Confidence            69999765421           2467788899999998865

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=92.55  E-value=0.21  Score=48.19  Aligned_cols=106  Identities=15%  Similarity=0.010  Sum_probs=63.2

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch-hhhhhh--cC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ETQMQE--KA  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~-~~~l~~--~~  103 (357)
                      +.++.+||-+|||. |..+..+++. +..+|+++|.+++.++.+++.        .++.+  |....++ ...+..  ..
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~~i--~~~~~~~~~~~~~~~~~g  252 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA--------GFETI--DLRNSAPLRDQIDQILGK  252 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT--------TCEEE--ETTSSSCHHHHHHHHHSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc--------CCcEE--cCCCcchHHHHHHHHhCC
Confidence            45789999999975 6566666665 444899999999988777532        12222  3222222 222211  12


Q ss_pred             CcccEEEEccchhhccCC-H----HHHHHHHHHHHhcccCCcEEEEE
Q 018352          104 NQADLVCCFQHLQMCFET-E----ERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes-~----~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ..+|+|+..-+-.. ... .    ......+..+.++|++||+++..
T Consensus       253 ~g~Dvvid~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          253 PEVDCGVDAVGFEA-HGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             SCEEEEEECSCTTC-BCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             CCCCEEEECCCCcc-ccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            36999986553221 000 0    00112467778899999998755

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=92.37  E-value=0.74  Score=43.14  Aligned_cols=99  Identities=16%  Similarity=0.172  Sum_probs=62.7

Q ss_pred             cCCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      -+.++.+||-+|+|. |..+..+++....+|+++|.+++-++.+++.    +.  .   ...|..+.++...+....+.+
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga--~---~~~d~~~~~~~~~~~~~~~~~  231 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GA--D---LVVNPLKEDAAKFMKEKVGGV  231 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TC--S---EEECTTTSCHHHHHHHHHSSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHC----CC--C---EEecCCCccHHHHHHHHhCCC
Confidence            356789999999963 5555666665445999999999988877542    11  1   123444333332222111579


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|+...+.      .    ..++.+.++|++||+++..
T Consensus       232 d~vid~~g~------~----~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          232 HAAVVTAVS------K----PAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             EEEEESSCC------H----HHHHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCC------H----HHHHHHHHHhhcCCEEEEe
Confidence            999765421      1    2466777899999998865

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=92.14  E-value=0.32  Score=45.63  Aligned_cols=97  Identities=16%  Similarity=0.089  Sum_probs=60.7

Q ss_pred             CCCCCEEEEECCCC--ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~--G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||-+|||.  |..+..+++....+|+++|.+++.++.+++.-.      . ..  .|....++...+..  ...
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga------~-~~--~~~~~~~~~~~~~~~~~~~  212 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGA------A-YV--IDTSTAPLYETVMELTNGI  212 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC------S-EE--EETTTSCHHHHHHHHTTTS
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCC------c-EE--EeCCcccHHHHHHHHhCCC
Confidence            35789999999984  555556666544599999999998888866311      1 11  23333333322221  134


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+-..       .    ....++|++||+++..
T Consensus       213 g~Dvvid~~g~~~-------~----~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          213 GADAAIDSIGGPD-------G----NELAFSLRPNGHFLTI  242 (340)
T ss_dssp             CEEEEEESSCHHH-------H----HHHHHTEEEEEEEEEC
T ss_pred             CCcEEEECCCChh-------H----HHHHHHhcCCCEEEEE
Confidence            7999986543221       1    2334799999999876

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=91.97  E-value=0.17  Score=50.69  Aligned_cols=82  Identities=11%  Similarity=0.065  Sum_probs=54.8

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh-----------hhhh
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-----------TQMQ  100 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-----------~~l~  100 (357)
                      ..+|+||.||.||...-+..+++..+.++|+++.+++.-+.++...   ....++.+|+......           ..+.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~  164 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD---PATHHFNEDIRDITLSHQEGVSDEAAAEHIR  164 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC---TTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC---CCcceeccchhhhhhccccccchhhHHhhhh
Confidence            3689999999999999888888877999999998877666554211   1234567887543210           0011


Q ss_pred             hcCCcccEEEEccchh
Q 018352          101 EKANQADLVCCFQHLQ  116 (357)
Q Consensus       101 ~~~~~FDlV~~~~~lh  116 (357)
                      .....+|+++..+-.+
T Consensus       165 ~~~~~~Dvl~gGpPCQ  180 (482)
T 3me5_A          165 QHIPEHDVLLAGFPCQ  180 (482)
T ss_dssp             HHSCCCSEEEEECCCC
T ss_pred             hcCCCCCEEEecCCCc
Confidence            1224689998765444

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=91.93  E-value=0.85  Score=43.06  Aligned_cols=101  Identities=14%  Similarity=0.050  Sum_probs=63.4

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCC-CCchhhhhhh--cC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQE--KA  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~-~~~~~~~l~~--~~  103 (357)
                      +.++.+||=+|+|. |..+..+++. +...|+++|.+++-++.+++. ...    -+. ...|.. ..++...+..  ..
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~----~~~-~~~~~~~~~~~~~~v~~~t~g  250 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE----VVT-HKVERLSAEESAKKIVESFGG  250 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT----CEE-EECCSCCHHHHHHHHHHHTSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh----ccc-ccccccchHHHHHHHHHHhCC
Confidence            56789999999864 5566666666 444599999999999988876 221    111 222211 1122222211  23


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ..+|+|+...+      ..    ..+..+.++|++||+++..
T Consensus       251 ~g~Dvvid~~g------~~----~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          251 IEPAVALECTG------VE----SSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             CCCSEEEECSC------CH----HHHHHHHHHSCTTCEEEEC
T ss_pred             CCCCEEEECCC------Ch----HHHHHHHHHhcCCCEEEEE
Confidence            57999986442      11    2466777899999999876

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=91.78  E-value=0.7  Score=43.35  Aligned_cols=97  Identities=14%  Similarity=0.102  Sum_probs=62.5

Q ss_pred             CCCCCEEEEECC--CCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGC--G~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||-.|+  |.|..+..+++....+++++|.+++.++.+++. . .    . ..  .|.....+...+..  ...
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~-g-a----~-~~--~d~~~~~~~~~~~~~~~~~  234 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL-G-A----D-ET--VNYTHPDWPKEVRRLTGGK  234 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-T-C----S-EE--EETTSTTHHHHHHHHTTTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc-C-C----C-EE--EcCCcccHHHHHHHHhCCC
Confidence            357899999998  456566666666555999999999988887642 1 1    1 11  24433333222221  124


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+ ..          .++.+.++|+++|+++..
T Consensus       235 ~~d~vi~~~g-~~----------~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          235 GADKVVDHTG-AL----------YFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             CEEEEEESSC-SS----------SHHHHHHHEEEEEEEEES
T ss_pred             CceEEEECCC-HH----------HHHHHHHhhccCCEEEEE
Confidence            7999987654 11          256677899999998865

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=91.75  E-value=0.56  Score=44.07  Aligned_cols=117  Identities=13%  Similarity=0.184  Sum_probs=63.4

Q ss_pred             CCCEEEEECCCCChhHH-HHH---Hh-cCC--eEEEEeCC--------hHHHHHHHHHh-Hh----cCCCceeEEEEcCC
Q 018352           31 PYVTVCDLYCGAGVDVD-KWE---TA-LIA--NYIGIDVA--------TSGIGEARDTW-EN----QRKNFIAEFFEADP   90 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~-k~~---~~-~~~--~v~GiDiS--------~~~l~~A~~r~-~~----~~~~~~v~f~~~D~   90 (357)
                      +..+|||+|=|+|-.+. .|.   +. +..  +++.+|-.        ++.++...+.+ ..    ........+..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            44689999999996442 221   22 222  56777742        11122211211 11    11123556777876


Q ss_pred             CCCchhhhhhhcCCcccEEEEccchhhccCCHHH----HHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352           91 CAENFETQMQEKANQADLVCCFQHLQMCFETEER----ARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (357)
Q Consensus        91 ~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~----~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~  157 (357)
                      ... + ..+  ...+||+|..-.     |....+    -..+++.++++++|||+|. |...+..+.+.++
T Consensus       176 ~~~-l-~~l--~~~~~Da~flDg-----FsP~kNPeLWs~e~f~~l~~~~~pgg~la-TYtaag~VRR~L~  236 (308)
T 3vyw_A          176 RKR-I-KEV--ENFKADAVFHDA-----FSPYKNPELWTLDFLSLIKERIDEKGYWV-SYSSSLSVRKSLL  236 (308)
T ss_dssp             HHH-G-GGC--CSCCEEEEEECC-----SCTTTSGGGGSHHHHHHHHTTEEEEEEEE-ESCCCHHHHHHHH
T ss_pred             HHH-H-hhh--cccceeEEEeCC-----CCcccCcccCCHHHHHHHHHHhCCCcEEE-EEeCcHHHHHHHH
Confidence            431 1 111  235799997532     322222    2468999999999999876 4444555555454

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=91.74  E-value=0.46  Score=44.95  Aligned_cols=100  Identities=11%  Similarity=0.051  Sum_probs=60.7

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCC-CCchhhhhhh-cCC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQE-KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~-~~~~~~~l~~-~~~  104 (357)
                      +.++.+||-+|||. |..+..+++. +..+|+++|.+++-++.+++.-.      . ..+..+.. ...+...+.. ...
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa------~-~vi~~~~~~~~~~~~~i~~~~~~  241 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA------D-LVLQISKESPQEIARKVEGQLGC  241 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC------S-EEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC------C-EEEcCcccccchHHHHHHHHhCC
Confidence            45789999999875 5556666665 44489999999998887764311      1 12221100 0112111211 125


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+..-+      ..    ..+....++|++||+++..
T Consensus       242 g~D~vid~~g------~~----~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          242 KPEVTIECTG------AE----ASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             CCSEEEECSC------CH----HHHHHHHHHSCTTCEEEEC
T ss_pred             CCCEEEECCC------Ch----HHHHHHHHHhcCCCEEEEE
Confidence            7999976442      11    2356677899999999865

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=91.69  E-value=0.78  Score=43.20  Aligned_cols=98  Identities=12%  Similarity=0.027  Sum_probs=60.8

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC-Cchhhhhhh--c--
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE--K--  102 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~-~~~~~~l~~--~--  102 (357)
                      +.++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++.-    .  . ..+  |..+ .++...+..  .  
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lG----a--~-~~~--~~~~~~~~~~~i~~~~~~~  236 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCG----A--D-VTL--VVDPAKEEESSIIERIRSA  236 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----C--S-EEE--ECCTTTSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC----C--C-EEE--cCcccccHHHHHHHHhccc
Confidence            45789999999874 55566666654457999999999888876421    1  1 122  2221 222222211  1  


Q ss_pred             -CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          103 -ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       103 -~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                       ...+|+|+....-      .    ..++...++|++||+++..
T Consensus       237 ~g~g~D~vid~~g~------~----~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          237 IGDLPNVTIDCSGN------E----KCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             SSSCCSEEEECSCC------H----HHHHHHHHHSCTTCEEEEC
T ss_pred             cCCCCCEEEECCCC------H----HHHHHHHHHHhcCCEEEEE
Confidence             2569999764421      1    2356677899999999866

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=91.39  E-value=0.8  Score=43.62  Aligned_cols=98  Identities=16%  Similarity=0.089  Sum_probs=63.1

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh----c
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE----K  102 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~----~  102 (357)
                      +.++.+||=+|+|. |..+..+++. +..+|+++|.+++.++.+++.-..         ...|....++...+..    .
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~---------~vi~~~~~~~~~~i~~~~~~~  250 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT---------ATVDPSAGDVVEAIAGPVGLV  250 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS---------EEECTTSSCHHHHHHSTTSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC---------EEECCCCcCHHHHHHhhhhcc
Confidence            56889999999864 5555666665 445899999999988887664211         1123333333222221    1


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+.+|+|+...+      ..    ..+..+.++|++||+++..
T Consensus       251 ~gg~Dvvid~~G------~~----~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          251 PGGVDVVIECAG------VA----ETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             TTCEEEEEECSC------CH----HHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCCEEEECCC------CH----HHHHHHHHHhccCCEEEEE
Confidence            347999976432      11    2467777899999999876

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=91.32  E-value=0.56  Score=45.63  Aligned_cols=62  Identities=5%  Similarity=-0.066  Sum_probs=47.0

Q ss_pred             CCCCEEEEECCCCChhHHHHH-Hh-c-CCeEEEEeCChHHHHHHHHHhHh--cCCC-ceeEEEEcCCC
Q 018352           30 HPYVTVCDLYCGAGVDVDKWE-TA-L-IANYIGIDVATSGIGEARDTWEN--QRKN-FIAEFFEADPC   91 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~-~~-~-~~~v~GiDiS~~~l~~A~~r~~~--~~~~-~~v~f~~~D~~   91 (357)
                      +++..|+|+||+.|..+..++ +. + .++|+++++++...+..++..+.  ++.. .++.++.+-+.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            477899999999998877766 33 2 37999999999999999988876  2222 46776665543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.32  E-value=1.4  Score=35.32  Aligned_cols=101  Identities=16%  Similarity=0.076  Sum_probs=60.6

Q ss_pred             CCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        32 ~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ..+|+=+|||. |..+.+.+.....+|+++|.+++.++.+++.        .+.++.+|..+.......  ....+|+|+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~--------~~~~~~gd~~~~~~l~~~--~~~~~d~vi   75 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE--------GFDAVIADPTDESFYRSL--DLEGVSAVL   75 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEECCTTCHHHHHHS--CCTTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC--------CCcEEECCCCCHHHHHhC--CcccCCEEE
Confidence            35789999985 4444444444445899999999887766532        356788998775442221  135689887


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      +...      +.+ ....+....+.+. ...++....+..
T Consensus        76 ~~~~------~~~-~n~~~~~~a~~~~-~~~iia~~~~~~  107 (141)
T 3llv_A           76 ITGS------DDE-FNLKILKALRSVS-DVYAIVRVSSPK  107 (141)
T ss_dssp             ECCS------CHH-HHHHHHHHHHHHC-CCCEEEEESCGG
T ss_pred             EecC------CHH-HHHHHHHHHHHhC-CceEEEEEcChh
Confidence            6442      222 2233333444455 566776665554

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=91.31  E-value=0.56  Score=44.51  Aligned_cols=97  Identities=13%  Similarity=-0.051  Sum_probs=61.9

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCCc
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~~  105 (357)
                      +.++.+||-+|||. |..+..+++....+++++|.+++-++.+++.-.      . ..+  |-...++...+..  ....
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa------~-~vi--~~~~~~~~~~v~~~~~g~g  257 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA------D-HGI--NRLEEDWVERVYALTGDRG  257 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC------S-EEE--ETTTSCHHHHHHHHHTTCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC------C-EEE--cCCcccHHHHHHHHhCCCC
Confidence            35789999999875 555666666655599999999998888765421      1 122  2111233222211  2347


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+|+...+-           ..+..+.++|++||.++..
T Consensus       258 ~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          258 ADHILEIAGG-----------AGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             EEEEEEETTS-----------SCHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCCh-----------HHHHHHHHHhhcCCEEEEE
Confidence            9999865431           1256677899999999876

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=91.20  E-value=0.48  Score=44.69  Aligned_cols=98  Identities=12%  Similarity=0.059  Sum_probs=62.0

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||=+|+|. |..+..+++. +..+|+++|.+++-++.+++.-..       .+  .|....++...+..  ...
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~-------~v--i~~~~~~~~~~v~~~t~g~  234 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT-------DI--INYKNGDIVEQILKATDGK  234 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC-------EE--ECGGGSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc-------eE--EcCCCcCHHHHHHHHcCCC
Confidence            45789999999875 5555666665 444899999999988887664211       11  22222233222221  234


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+-.          ..+..+.++|++||+++..
T Consensus       235 g~D~v~d~~g~~----------~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          235 GVDKVVIAGGDV----------HTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             CEEEEEECSSCT----------THHHHHHHHEEEEEEEEEC
T ss_pred             CCCEEEECCCCh----------HHHHHHHHHHhcCCEEEEe
Confidence            699998644211          2466777899999999866

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=90.98  E-value=0.58  Score=44.61  Aligned_cols=95  Identities=16%  Similarity=0.069  Sum_probs=60.5

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      +.++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++.- .     . .++  |....+....+   .+.+|
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lG-a-----~-~vi--~~~~~~~~~~~---~~g~D  259 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALG-A-----D-EVV--NSRNADEMAAH---LKSFD  259 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHT-C-----S-EEE--ETTCHHHHHTT---TTCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-C-----c-EEe--ccccHHHHHHh---hcCCC
Confidence            46789999999874 55566666665557999999999888886531 1     1 112  22221111111   25799


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+...+-..          .++.+.++|++||+++..
T Consensus       260 vvid~~g~~~----------~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          260 FILNTVAAPH----------NLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             EEEECCSSCC----------CHHHHHTTEEEEEEEEEC
T ss_pred             EEEECCCCHH----------HHHHHHHHhccCCEEEEe
Confidence            9986543211          255667899999998865

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=90.75  E-value=1.7  Score=41.78  Aligned_cols=103  Identities=14%  Similarity=-0.012  Sum_probs=61.8

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||=+|+|. |..+..+++. +..+|+++|.+++-++.+++.-.      . .  ..|....++...+..  ...
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa------~-~--vi~~~~~~~~~~i~~~t~g~  281 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA------D-H--VIDPTKENFVEAVLDYTNGL  281 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC------S-E--EECTTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC------C-E--EEcCCCCCHHHHHHHHhCCC
Confidence            45789999999864 4455566665 44599999999999888865421      1 1  123333333332221  234


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+-.-+-.     ......+++.+.+++++||+++..
T Consensus       282 g~D~vid~~g~~-----~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          282 GAKLFLEATGVP-----QLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             CCSEEEECSSCH-----HHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             CCCEEEECCCCc-----HHHHHHHHHHHHhccCCCcEEEEe
Confidence            799998644211     012333444444666999999876

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=90.74  E-value=0.64  Score=44.60  Aligned_cols=107  Identities=15%  Similarity=0.057  Sum_probs=63.5

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc-hhhhhhh--cC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQMQE--KA  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~-~~~~l~~--~~  103 (357)
                      +.++.+||-+|||. |..+..+++. +..+|+++|.+++-++.|++.        -++.+  |....+ +...+..  ..
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~~i--~~~~~~~~~~~v~~~t~g  252 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ--------GFEIA--DLSLDTPLHEQIAALLGE  252 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT--------TCEEE--ETTSSSCHHHHHHHHHSS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc--------CCcEE--ccCCcchHHHHHHHHhCC
Confidence            45789999999875 5566666665 444799999999988887542        12222  222222 2222221  12


Q ss_pred             CcccEEEEccchhhccC-----CHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          104 NQADLVCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fe-----s~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ..+|+|+..-+-.....     +.......++.+.++|++||+++..
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          253 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            47999986543211000     0001123577788899999998765

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=90.48  E-value=0.67  Score=43.58  Aligned_cols=98  Identities=16%  Similarity=0.195  Sum_probs=61.4

Q ss_pred             CCCCCEEEEECCCCC--hhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cC-
Q 018352           29 SHPYVTVCDLYCGAG--VDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KA-  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G--~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~-  103 (357)
                      +.++.+||-.|+|.|  ..+..+++.. ..+|+++|.+++.++.+++. . .    . .+  .|.........+.. .. 
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~-g-~----~-~~--~~~~~~~~~~~~~~~~~~  238 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-G-A----D-YV--INASMQDPLAEIRRITES  238 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-T-C----S-EE--EETTTSCHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-C-C----C-EE--ecCCCccHHHHHHHHhcC
Confidence            457899999999844  4455555554 56899999999988887543 1 1    1 11  23333332211111 12 


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +.+|+|+...+-          ...++.+.++|++||+++..
T Consensus       239 ~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          239 KGVDAVIDLNNS----------EKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             SCEEEEEESCCC----------HHHHTTGGGGEEEEEEEEEC
T ss_pred             CCceEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            479999765421          12467778899999998865

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=90.45  E-value=1.2  Score=41.47  Aligned_cols=97  Identities=21%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             CCCCCEEEEECC--CCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGC--G~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||-.|+  |.|..+..+++....+++++|.+++.++.+++. . .    .   ...|.........+..  ...
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~-g-~----~---~~~d~~~~~~~~~i~~~~~~~  213 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL-G-C----H---HTINYSTQDFAEVVREITGGK  213 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-T-C----S---EEEETTTSCHHHHHHHHHTTC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-C-C----C---EEEECCCHHHHHHHHHHhCCC
Confidence            357889999996  445556666665455999999999888877552 1 1    1   1124433333222211  134


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+-           ..++.+.++|++||+++..
T Consensus       214 ~~d~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~  243 (333)
T 1wly_A          214 GVDVVYDSIGK-----------DTLQKSLDCLRPRGMCAAY  243 (333)
T ss_dssp             CEEEEEECSCT-----------TTHHHHHHTEEEEEEEEEC
T ss_pred             CCeEEEECCcH-----------HHHHHHHHhhccCCEEEEE
Confidence            69999865532           2356777899999998866

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.34  E-value=1.3  Score=43.24  Aligned_cols=104  Identities=13%  Similarity=0.036  Sum_probs=69.9

Q ss_pred             CCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        32 ~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ..+|+=+|||. |..+...+......|+++|.+++.++.+++.        .+.++.+|++........  .-...|+|+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~--------g~~vi~GDat~~~~L~~a--gi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESA--GAAKAEVLI   73 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT--------TCCCEESCTTCHHHHHHT--TTTTCSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC--------CCeEEEcCCCCHHHHHhc--CCCccCEEE
Confidence            45789999986 5455555555555899999999998877532        345689999886543222  235789887


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      +..      .+. .....+-...+.+.|...++...-+....
T Consensus        74 v~~------~~~-~~n~~i~~~ar~~~p~~~Iiara~~~~~~  108 (413)
T 3l9w_A           74 NAI------DDP-QTNLQLTEMVKEHFPHLQIIARARDVDHY  108 (413)
T ss_dssp             ECC------SSH-HHHHHHHHHHHHHCTTCEEEEEESSHHHH
T ss_pred             ECC------CCh-HHHHHHHHHHHHhCCCCeEEEEECCHHHH
Confidence            643      222 33445556667788888888887776543

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=90.31  E-value=0.84  Score=43.08  Aligned_cols=97  Identities=10%  Similarity=-0.088  Sum_probs=60.2

Q ss_pred             CCCCCEEEEECCC--CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||-.|++  .|..+..+++....+++++|.+++.++.+++. . .    .   ...|.....+...+..  ...
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~-g-~----~---~~~~~~~~~~~~~~~~~~~~~  230 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL-G-A----A---AGFNYKKEDFSEATLKFTKGA  230 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-T-C----S---EEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-C-C----c---EEEecCChHHHHHHHHHhcCC
Confidence            3478899999853  45555566665555999999999988887433 1 1    1   1223333333222221  124


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+-.           .+....++|++||+++..
T Consensus       231 ~~d~vi~~~G~~-----------~~~~~~~~l~~~G~iv~~  260 (354)
T 2j8z_A          231 GVNLILDCIGGS-----------YWEKNVNCLALDGRWVLY  260 (354)
T ss_dssp             CEEEEEESSCGG-----------GHHHHHHHEEEEEEEEEC
T ss_pred             CceEEEECCCch-----------HHHHHHHhccCCCEEEEE
Confidence            699998655321           255667899999998866

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=90.27  E-value=1  Score=42.33  Aligned_cols=96  Identities=16%  Similarity=0.041  Sum_probs=60.7

Q ss_pred             CCCEEEEECCCC-ChhHHHHHHhcCC-eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCCcc
Q 018352           31 PYVTVCDLYCGA-GVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~-G~~l~k~~~~~~~-~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~~F  106 (357)
                      ++.+||-+|+|. |..+..+++.... +|+++|.+++.++.+++.-.      . .  ..|....++...+..  ....+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga------~-~--~~~~~~~~~~~~v~~~~~g~g~  237 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA------D-Y--VINPFEEDVVKEVMDITDGNGV  237 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC------S-E--EECTTTSCHHHHHHHHTTTSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC------C-E--EECCCCcCHHHHHHHHcCCCCC
Confidence            788999999963 4455666665444 89999999998887764311      1 1  123333333332221  12469


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|+..-+-          ...++.+.++|++||+++..
T Consensus       238 D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          238 DVFLEFSGA----------PKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             EEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            999765421          12466777899999998865

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.16  E-value=1.6  Score=36.82  Aligned_cols=103  Identities=14%  Similarity=0.074  Sum_probs=60.4

Q ss_pred             CCEEEEECCCC-ChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           32 YVTVCDLYCGA-GVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        32 ~~~VLDlGCG~-G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      +.+|+=+|||. |..+.+.+... ...|+++|.+++.++.+++    .    .+.++.+|..+........ .-..+|+|
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~----g~~~~~gd~~~~~~l~~~~-~~~~ad~v  109 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----E----GRNVISGDATDPDFWERIL-DTGHVKLV  109 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----T----TCCEEECCTTCHHHHHTBC-SCCCCCEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----C----CCCEEEcCCCCHHHHHhcc-CCCCCCEE
Confidence            46899999986 44444444443 4589999999987766543    1    2456778876533211110 13568988


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      ++...      +.+....+ -...+.+.|++.++..+.+..
T Consensus       110 i~~~~------~~~~~~~~-~~~~~~~~~~~~ii~~~~~~~  143 (183)
T 3c85_A          110 LLAMP------HHQGNQTA-LEQLQRRNYKGQIAAIAEYPD  143 (183)
T ss_dssp             EECCS------SHHHHHHH-HHHHHHTTCCSEEEEEESSHH
T ss_pred             EEeCC------ChHHHHHH-HHHHHHHCCCCEEEEEECCHH
Confidence            76431      22222233 335556677788887765543

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=90.11  E-value=0.77  Score=43.14  Aligned_cols=91  Identities=16%  Similarity=0.085  Sum_probs=60.4

Q ss_pred             cCCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      -+.++.+||-+|+|. |..+..+++....+|+++|.+++-++.+++.-.      .. ++ .|.  ..+       ...+
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa------~~-v~-~~~--~~~-------~~~~  235 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGV------KH-FY-TDP--KQC-------KEEL  235 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTC------SE-EE-SSG--GGC-------CSCE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCC------Ce-ec-CCH--HHH-------hcCC
Confidence            356889999999875 556666666655599999999998887765211      11 22 221  111       2379


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|+...+-.          ..+..+.++|++||+++..
T Consensus       236 D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          236 DFIISTIPTH----------YDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             EEEEECCCSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             CEEEECCCcH----------HHHHHHHHHHhcCCEEEEE
Confidence            9998654322          1256677899999999876

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=90.06  E-value=0.82  Score=42.47  Aligned_cols=97  Identities=14%  Similarity=0.128  Sum_probs=60.7

Q ss_pred             CCCCCEEEEECCC--CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||-.|++  .|..+..+++....+|+++|.+++.++.+++. . .    . .  ..|.........+..  ...
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~-g-~----~-~--~~~~~~~~~~~~~~~~~~~~  208 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA-G-A----W-Q--VINYREEDLVERLKEITGGK  208 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH-T-C----S-E--EEETTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-C-C----C-E--EEECCCccHHHHHHHHhCCC
Confidence            3478999999943  45455555555445999999999888877652 1 1    1 1  124333333222211  124


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+ .          ..++.+.++|++||+++..
T Consensus       209 ~~D~vi~~~g-~----------~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          209 KVRVVYDSVG-R----------DTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             CEEEEEECSC-G----------GGHHHHHHTEEEEEEEEEC
T ss_pred             CceEEEECCc-h----------HHHHHHHHHhcCCCEEEEE
Confidence            6999987654 1          2356777899999998865

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=89.84  E-value=0.83  Score=42.49  Aligned_cols=97  Identities=18%  Similarity=0.146  Sum_probs=61.8

Q ss_pred             CCCCCEEEEEC-CC-CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLY-CG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlG-CG-~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||-.| +| -|..+..+++....+++++|.+++-++.+++.-.      . ..  .|.....+...+..  ...
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga------~-~~--~~~~~~~~~~~~~~~~~~~  208 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGA------W-ET--IDYSHEDVAKRVLELTDGK  208 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC------S-EE--EETTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC------C-EE--EeCCCccHHHHHHHHhCCC
Confidence            35789999998 34 3555566666544599999999998888865311      1 11  23333333332221  234


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+-           ..+..+.++|++||+++..
T Consensus       209 g~Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~~  238 (325)
T 3jyn_A          209 KCPVVYDGVGQ-----------DTWLTSLDSVAPRGLVVSF  238 (325)
T ss_dssp             CEEEEEESSCG-----------GGHHHHHTTEEEEEEEEEC
T ss_pred             CceEEEECCCh-----------HHHHHHHHHhcCCCEEEEE
Confidence            79999865532           1356677899999999876

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=89.72  E-value=0.76  Score=43.31  Aligned_cols=98  Identities=11%  Similarity=-0.072  Sum_probs=61.1

Q ss_pred             CCCC--CEEEEECCC--CChhHHHHHHhcCC-eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-c
Q 018352           29 SHPY--VTVCDLYCG--AGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-K  102 (357)
Q Consensus        29 ~~~~--~~VLDlGCG--~G~~l~k~~~~~~~-~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~  102 (357)
                      +.++  .+||-.|++  -|..+..+++.... +|+++|.+++.++.+++.+..     .   ...|.....+...+.. .
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~-----~---~~~d~~~~~~~~~~~~~~  227 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGF-----D---AAINYKKDNVAEQLRESC  227 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCC-----S---EEEETTTSCHHHHHHHHC
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC-----c---eEEecCchHHHHHHHHhc
Confidence            4578  899999984  34455555555444 999999998877776543211     1   1234433333322221 1


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+.+|+|+...+-           ..+..+.++|++||+++..
T Consensus       228 ~~~~d~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          228 PAGVDVYFDNVGG-----------NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             TTCEEEEEESCCH-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             CCCCCEEEECCCH-----------HHHHHHHHHhccCcEEEEE
Confidence            2369999865531           3467778899999998865

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=89.40  E-value=0.78  Score=43.08  Aligned_cols=98  Identities=11%  Similarity=-0.021  Sum_probs=61.8

Q ss_pred             CCCCCEEEEECCC--CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCC-CCchhhhhhh-cCC
Q 018352           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQE-KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~-~~~~~~~l~~-~~~  104 (357)
                      +.++.+||-+|++  .|..+..+++....+|+++|.+++.++.+++.    +.  .   ...|.. ...+...+.. ..+
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~----g~--~---~~~d~~~~~~~~~~~~~~~~~  237 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSI----GG--E---VFIDFTKEKDIVGAVLKATDG  237 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHT----TC--C---EEEETTTCSCHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHc----CC--c---eEEecCccHhHHHHHHHHhCC
Confidence            4578999999983  45555666665445999999998888766542    11  1   112443 2233222211 123


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+.          ...++.+.+.|++||+++..
T Consensus       238 ~~D~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          238 GAHGVINVSVS----------EAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             CEEEEEECSSC----------HHHHHHHTTSEEEEEEEEEC
T ss_pred             CCCEEEECCCc----------HHHHHHHHHHHhcCCEEEEE
Confidence            79999865531          13577888999999998865

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=89.37  E-value=1.3  Score=42.01  Aligned_cols=97  Identities=12%  Similarity=-0.012  Sum_probs=61.6

Q ss_pred             CCCCCEEEEEC-CC-CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 018352           29 SHPYVTVCDLY-CG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlG-CG-~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~  105 (357)
                      +.++.+||-+| +| .|..+..+++....+|+++|.+++.++.+++.    +.  . ..+  |.....+...+.. ....
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga--~-~~~--~~~~~~~~~~~~~~~~~g  231 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSL----GC--D-RPI--NYKTEPVGTVLKQEYPEG  231 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC--S-EEE--ETTTSCHHHHHHHHCTTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc----CC--c-EEE--ecCChhHHHHHHHhcCCC
Confidence            45789999999 34 46566666666555899999999888877652    11  1 112  2222333222221 1346


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+|+...+-           ..++.+.++|++||+++..
T Consensus       232 ~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          232 VDVVYESVGG-----------AMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             EEEEEECSCT-----------HHHHHHHHHEEEEEEEEEC
T ss_pred             CCEEEECCCH-----------HHHHHHHHHHhcCCEEEEE
Confidence            9999865421           2467778899999998865

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=89.25  E-value=1.1  Score=41.73  Aligned_cols=97  Identities=12%  Similarity=0.041  Sum_probs=61.2

Q ss_pred             CCCCCEEEEECCC--CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||-+|++  -|..+..+++....+++++|.+++-++.+++.- .     . ..  .|....++...+..  ...
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g-a-----~-~~--~~~~~~~~~~~~~~~~~~~  216 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYG-A-----E-YL--INASKEDILRQVLKFTNGK  216 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT-C-----S-EE--EETTTSCHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-C-----c-EE--EeCCCchHHHHHHHHhCCC
Confidence            4578999999953  344555666665559999999999888775521 1     1 11  23333333332221  135


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+-           ..+..+.++|++||+++..
T Consensus       217 g~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          217 GVDASFDSVGK-----------DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             CEEEEEECCGG-----------GGHHHHHHHEEEEEEEEEC
T ss_pred             CceEEEECCCh-----------HHHHHHHHHhccCCEEEEE
Confidence            79999865532           1356677899999999876

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=89.20  E-value=0.68  Score=43.78  Aligned_cols=97  Identities=14%  Similarity=0.077  Sum_probs=60.3

Q ss_pred             CCCCCEEEEECCC--CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||-.|++  .|..+..+++....+|+++|.+++.++.+++.    +.  . .  ..|.....+...+..  ...
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga--~-~--~~d~~~~~~~~~~~~~~~~~  238 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----GA--H-E--VFNHREVNYIDKIKKYVGEK  238 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC--S-E--EEETTSTTHHHHHHHHHCTT
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHc----CC--C-E--EEeCCCchHHHHHHHHcCCC
Confidence            4578999999983  34455566665555999999999888766432    11  1 1  123333333222211  134


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+-           ..+....++|++||+++..
T Consensus       239 ~~D~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          239 GIDIIIEMLAN-----------VNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             CEEEEEESCHH-----------HHHHHHHHHEEEEEEEEEC
T ss_pred             CcEEEEECCCh-----------HHHHHHHHhccCCCEEEEE
Confidence            79999765421           1356677899999998865

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=88.96  E-value=0.37  Score=45.64  Aligned_cols=97  Identities=15%  Similarity=0.094  Sum_probs=59.7

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC-chhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~-~~~~~l~~~~~~F  106 (357)
                      +.++.+||-+|+|. |..+..+++....+|+++|.+++-++.+++.- .     . .++  |.... ++...+   .+.+
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lG-a-----~-~v~--~~~~~~~~~~~~---~~~~  244 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMG-A-----D-HYI--ATLEEGDWGEKY---FDTF  244 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHT-C-----S-EEE--EGGGTSCHHHHS---CSCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcC-C-----C-EEE--cCcCchHHHHHh---hcCC
Confidence            45789999999864 44556666654448999999999888886531 1     1 112  21111 222222   1579


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|+....--.        ...++.+.++|++||+++..
T Consensus       245 D~vid~~g~~~--------~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          245 DLIVVCASSLT--------DIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             EEEEECCSCST--------TCCTTTGGGGEEEEEEEEEC
T ss_pred             CEEEECCCCCc--------HHHHHHHHHHhcCCCEEEEe
Confidence            99986553200        01245567899999998865

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=88.10  E-value=1.9  Score=40.88  Aligned_cols=98  Identities=15%  Similarity=0.069  Sum_probs=60.7

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC--Cchhhhhhh-cC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~--~~~~~~l~~-~~  103 (357)
                      +.++.+||-+|+|. |..+..+++. +..+|+++|.+++-++.+++.-.      . .++  |..+  .++...+.. ..
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa------~-~vi--~~~~~~~~~~~~i~~~t~  259 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA------T-ECL--NPKDYDKPIYEVICEKTN  259 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC------S-EEE--CGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC------c-EEE--ecccccchHHHHHHHHhC
Confidence            45789999999874 4455566665 44589999999998888764211      1 112  2211  223222211 12


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpG-G~fi~t  145 (357)
                      +.+|+|+..-+-          ...+..+.++|++| |+++..
T Consensus       260 gg~Dvvid~~g~----------~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          260 GGVDYAVECAGR----------IETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             SCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCEEEECCCC----------HHHHHHHHHHHhcCCCEEEEE
Confidence            479999764421          12467778899999 998865

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=88.10  E-value=1.1  Score=42.88  Aligned_cols=100  Identities=20%  Similarity=0.117  Sum_probs=60.2

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHhcC-CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCC-CCchhhhhhh--cC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQE--KA  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~-~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~-~~~~~~~l~~--~~  103 (357)
                      +.++.+||-+|+|. |..+..+++... .+|+++|.+++-++.+++. ..     . .++..+.. ..++...+..  ..
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l-Ga-----~-~vi~~~~~~~~~~~~~v~~~~~g  265 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-GA-----D-LTLNRRETSVEERRKAIMDITHG  265 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-TC-----S-EEEETTTSCHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc-CC-----c-EEEeccccCcchHHHHHHHHhCC
Confidence            45789999999764 445566666544 5999999999988887642 11     1 12221100 1122222211  12


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ..+|+|+..-+-.          ..+..+.++|++||+++..
T Consensus       266 ~g~Dvvid~~g~~----------~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          266 RGADFILEATGDS----------RALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             SCEEEEEECSSCT----------THHHHHHHHEEEEEEEEEC
T ss_pred             CCCcEEEECCCCH----------HHHHHHHHHHhcCCEEEEE
Confidence            3699998654211          2356677899999998865

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=88.07  E-value=0.63  Score=43.68  Aligned_cols=95  Identities=16%  Similarity=0.077  Sum_probs=58.9

Q ss_pred             CCCEEEEECCCC-ChhHHHHHHhcCC-eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCccc
Q 018352           31 PYVTVCDLYCGA-GVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~-G~~l~k~~~~~~~-~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FD  107 (357)
                      ++.+||-+|+|. |..+..+++.... +|+++|.+++-++.+++.  ..      .  ..|....++...+.. ....+|
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l--a~------~--v~~~~~~~~~~~~~~~~~~g~D  233 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY--AD------R--LVNPLEEDLLEVVRRVTGSGVE  233 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT--CS------E--EECTTTSCHHHHHHHHHSSCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--HH------h--ccCcCccCHHHHHHHhcCCCCC
Confidence            788999999853 4455566665444 899999998877665432  11      1  123333333322211 134699


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+...+-          ...++.+.++|++||+++..
T Consensus       234 ~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          234 VLLEFSGN----------EAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             EEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            99765421          12366777899999998865

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=88.05  E-value=0.64  Score=43.65  Aligned_cols=95  Identities=16%  Similarity=0.047  Sum_probs=59.5

Q ss_pred             CCCEEEEECCCC-ChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC-CchhhhhhhcCCcc
Q 018352           31 PYVTVCDLYCGA-GVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~-G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~-~~~~~~l~~~~~~F  106 (357)
                      ++.+||-+|+|. |..+..+++..  ..+|+++|.|++-++.+++.-..       .++  |... .+....+. ....+
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~-------~vi--~~~~~~~~~~~~~-~g~g~  239 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD-------YVS--EMKDAESLINKLT-DGLGA  239 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS-------EEE--CHHHHHHHHHHHH-TTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC-------EEe--ccccchHHHHHhh-cCCCc
Confidence            789999999964 44556666654  56899999999988888653211       111  1111 11111121 12379


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|+..-+-      .    ..++.+.++|++||+++..
T Consensus       240 D~vid~~g~------~----~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          240 SIAIDLVGT------E----ETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             EEEEESSCC------H----HHHHHHHHHEEEEEEEEEC
T ss_pred             cEEEECCCC------h----HHHHHHHHHhhcCCEEEEe
Confidence            999865421      1    2466777899999998865

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=87.88  E-value=1.1  Score=42.16  Aligned_cols=92  Identities=14%  Similarity=0.074  Sum_probs=57.2

Q ss_pred             CEEEEECCCC-ChhH-HHHH-Hh-cCCeEEEEeCChH---HHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           33 VTVCDLYCGA-GVDV-DKWE-TA-LIANYIGIDVATS---GIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        33 ~~VLDlGCG~-G~~l-~k~~-~~-~~~~v~GiDiS~~---~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      .+||-+|+|. |..+ ..++ +. +..+|+++|.+++   -++.+++.        .+..+  |....++.. +....+.
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l--------Ga~~v--~~~~~~~~~-i~~~~gg  242 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL--------DATYV--DSRQTPVED-VPDVYEQ  242 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT--------TCEEE--ETTTSCGGG-HHHHSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc--------CCccc--CCCccCHHH-HHHhCCC
Confidence            8999999853 4455 5666 54 4434999999988   77777532        12222  433333332 2211237


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+|+-..+      ..    ..++.+.++|++||+++..
T Consensus       243 ~Dvvid~~g------~~----~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          243 MDFIYEATG------FP----KHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             EEEEEECSC------CH----HHHHHHHHHEEEEEEEEEC
T ss_pred             CCEEEECCC------Ch----HHHHHHHHHHhcCCEEEEE
Confidence            999975442      11    2466777899999998866

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=87.82  E-value=2  Score=40.60  Aligned_cols=95  Identities=12%  Similarity=0.086  Sum_probs=61.0

Q ss_pred             CCCEEEEEC-CCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcc
Q 018352           31 PYVTVCDLY-CGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQA  106 (357)
Q Consensus        31 ~~~~VLDlG-CG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~F  106 (357)
                      ++.+||=+| +|. |..+..+++. +..+|+++|.+++-++.+++.-.      . .+  .|... ++...+.. ..+.+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa------d-~v--i~~~~-~~~~~v~~~~~~g~  240 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA------H-HV--IDHSK-PLAAEVAALGLGAP  240 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC------S-EE--ECTTS-CHHHHHHTTCSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC------C-EE--EeCCC-CHHHHHHHhcCCCc
Confidence            577999998 553 6566777776 57799999999998888765211      1 11  22222 23222221 23579


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|+...+          ....+..+.++|++||+++..
T Consensus       241 Dvvid~~g----------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          241 AFVFSTTH----------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEECSC----------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             eEEEECCC----------chhhHHHHHHHhcCCCEEEEE
Confidence            99876431          123467778899999999866

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=87.68  E-value=2  Score=40.64  Aligned_cols=98  Identities=15%  Similarity=0.135  Sum_probs=60.5

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC--Cchhhhhhh-cC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~--~~~~~~l~~-~~  103 (357)
                      +.++.+||-+|+|. |..+..+++.. ..+|+++|.+++.++.+++.-.      . .+  .|..+  .++...+.. ..
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa------~-~v--i~~~~~~~~~~~~~~~~~~  260 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA------T-DF--VNPNDHSEPISQVLSKMTN  260 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC------C-EE--ECGGGCSSCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC------c-eE--EeccccchhHHHHHHHHhC
Confidence            35789999999864 44556666654 4489999999998888764211      1 11  22221  123222211 12


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpG-G~fi~t  145 (357)
                      +.+|+|+..-.-          ...+..+.++|++| |+++..
T Consensus       261 ~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          261 GGVDFSLECVGN----------VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             SCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCEEEECCCC----------HHHHHHHHHHhhcCCcEEEEE
Confidence            479999764421          12467778899999 998865

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=87.45  E-value=2.4  Score=40.04  Aligned_cols=98  Identities=14%  Similarity=0.147  Sum_probs=60.9

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC--Cchhhhhhh-cC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~--~~~~~~l~~-~~  103 (357)
                      +.++.+||-+|+|. |..+..+++. +..+|+++|.+++.++.+++.-.      . .++  |..+  .++...+.. ..
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa------~-~vi--~~~~~~~~~~~~v~~~~~  258 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA------T-ECI--NPQDFSKPIQEVLIEMTD  258 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC------S-EEE--CGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC------c-eEe--ccccccccHHHHHHHHhC
Confidence            35789999999864 4455566665 44489999999998888864311      1 112  2221  122222211 12


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpG-G~fi~t  145 (357)
                      +.+|+|+....-          ...++.+.++|++| |+++..
T Consensus       259 ~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          259 GGVDYSFECIGN----------VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             SCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCEEEECCCc----------HHHHHHHHHhhccCCcEEEEE
Confidence            479999764421          12467778899999 998865

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=87.26  E-value=1.2  Score=41.80  Aligned_cols=96  Identities=15%  Similarity=0.066  Sum_probs=61.1

Q ss_pred             CCCCCEEEEECCC--CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||-.|++  -|..+..+++....+++++|.+++.++.+++.-.      . .++..+   ..+...+..  ...
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga------~-~v~~~~---~~~~~~v~~~~~~~  226 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGA------D-IVLPLE---EGWAKAVREATGGA  226 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC------S-EEEESS---TTHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC------c-EEecCc---hhHHHHHHHHhCCC
Confidence            3478999999983  3556666666655599999999998887766311      1 122222   233222221  123


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+-.           .+..+.++|++||+++..
T Consensus       227 g~Dvvid~~g~~-----------~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          227 GVDMVVDPIGGP-----------AFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             CEEEEEESCC-------------CHHHHHHTEEEEEEEEEC
T ss_pred             CceEEEECCchh-----------HHHHHHHhhcCCCEEEEE
Confidence            799998654321           356677899999999866

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=87.24  E-value=1.2  Score=41.73  Aligned_cols=98  Identities=16%  Similarity=0.121  Sum_probs=62.8

Q ss_pred             cCCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cC
Q 018352           28 YSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~  103 (357)
                      ...++.+||-+|+|. |..+..+++. +..+|+++|.+++-++.+++.-.      . .++..+  . .+.+.+..  ..
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa------~-~~i~~~--~-~~~~~v~~~t~g  237 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA------D-AAVKSG--A-GAADAIRELTGG  237 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC------S-EEEECS--T-THHHHHHHHHGG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC------C-EEEcCC--C-cHHHHHHHHhCC
Confidence            356889999999875 5556666665 47799999999998888765321      1 122221  1 22222211  12


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ..+|+|+-.-+      ..    ..+..+.++|++||+++..
T Consensus       238 ~g~d~v~d~~G------~~----~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          238 QGATAVFDFVG------AQ----STIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             GCEEEEEESSC------CH----HHHHHHHHHEEEEEEEEEC
T ss_pred             CCCeEEEECCC------CH----HHHHHHHHHHhcCCEEEEE
Confidence            47999976442      11    2467778899999999866

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=87.02  E-value=1.9  Score=40.78  Aligned_cols=98  Identities=16%  Similarity=0.144  Sum_probs=60.3

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC--Cchhhhhhh-cC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~--~~~~~~l~~-~~  103 (357)
                      +.++.+||-+|+|. |..+..+++.. ..+|+++|.+++.++.+++.-.      . ..+  |..+  .++...+.. ..
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa------~-~vi--~~~~~~~~~~~~~~~~~~  259 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA------T-ECV--NPQDYKKPIQEVLTEMSN  259 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC------S-EEE--CGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC------c-eEe--cccccchhHHHHHHHHhC
Confidence            35789999999874 54556666654 4489999999998888754211      1 112  2221  223222211 12


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpG-G~fi~t  145 (357)
                      +.+|+|+..-.      .    ...+..+.++|++| |+++..
T Consensus       260 ~g~D~vid~~g------~----~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          260 GGVDFSFEVIG------R----LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             SCBSEEEECSC------C----HHHHHHHHHHBCTTTCEEEEC
T ss_pred             CCCcEEEECCC------C----HHHHHHHHHHhhcCCcEEEEe
Confidence            47999976442      1    12466777899999 998865

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=86.96  E-value=1.4  Score=41.73  Aligned_cols=92  Identities=13%  Similarity=0.064  Sum_probs=57.1

Q ss_pred             CCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCCh---HHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVAT---SGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        32 ~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~---~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      +.+||-+|+|. |..+..+++....+|+++|.++   +-++.+++.        .+..+  | .. .+...+....+.+|
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~--------ga~~v--~-~~-~~~~~~~~~~~~~d  248 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET--------KTNYY--N-SS-NGYDKLKDSVGKFD  248 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH--------TCEEE--E-CT-TCSHHHHHHHCCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh--------CCcee--c-hH-HHHHHHHHhCCCCC
Confidence            89999999843 3344555555334999999998   777666542        12222  3 22 32222211115799


Q ss_pred             EEEEccchhhccCCHHHHHHHH-HHHHhcccCCcEEEEE
Q 018352          108 LVCCFQHLQMCFETEERARRLL-QNVSSLLKPGGYFLGI  145 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L-~~i~~~LkpGG~fi~t  145 (357)
                      +|+...+...          .+ +.+.+.|++||.++..
T Consensus       249 ~vid~~g~~~----------~~~~~~~~~l~~~G~iv~~  277 (366)
T 2cdc_A          249 VIIDATGADV----------NILGNVIPLLGRNGVLGLF  277 (366)
T ss_dssp             EEEECCCCCT----------HHHHHHGGGEEEEEEEEEC
T ss_pred             EEEECCCChH----------HHHHHHHHHHhcCCEEEEE
Confidence            9987553211          34 7788999999998866

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=86.82  E-value=0.51  Score=43.64  Aligned_cols=64  Identities=19%  Similarity=0.237  Sum_probs=41.7

Q ss_pred             eeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhc--cC--------------CHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           82 IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC--FE--------------TEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        82 ~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~--fe--------------s~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ...++++|+...  ...+  ++++||+|++.--.+..  ..              .......+++++.++|||||.+++.
T Consensus        21 ~~~i~~gD~~~~--l~~l--~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           21 VHRLHVGDAREV--LASF--PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             CEEEEESCHHHH--HTTS--CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEECcHHHH--HhhC--CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            467899998551  1111  35789999996543210  00              0122456788999999999999988


Q ss_pred             eCCc
Q 018352          146 TPDS  149 (357)
Q Consensus       146 ~pd~  149 (357)
                      +.+.
T Consensus        97 ~~d~  100 (297)
T 2zig_A           97 VGDV  100 (297)
T ss_dssp             ECCE
T ss_pred             ECCC
Confidence            7654

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=86.64  E-value=0.69  Score=42.51  Aligned_cols=92  Identities=16%  Similarity=0.062  Sum_probs=58.9

Q ss_pred             CCCCCEEEEECC-C-CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC-CchhhhhhhcCCc
Q 018352           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlGC-G-~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~-~~~~~~l~~~~~~  105 (357)
                      +.++.+||-+|+ | .|..+..+++....+++++|.+++.++.+++.    +.  . ..  .|... .++...    -+.
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga--~-~~--~~~~~~~~~~~~----~~~  189 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL----GA--E-EA--ATYAEVPERAKA----WGG  189 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT----TC--S-EE--EEGGGHHHHHHH----TTS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CC--C-EE--EECCcchhHHHH----hcC
Confidence            678899999998 3 35556666665445999999999888777542    11  1 11  12211 122111    157


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+|+. .+-           ..++.+.++|++||+++..
T Consensus       190 ~d~vid-~g~-----------~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          190 LDLVLE-VRG-----------KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             EEEEEE-CSC-----------TTHHHHHTTEEEEEEEEEC
T ss_pred             ceEEEE-CCH-----------HHHHHHHHhhccCCEEEEE
Confidence            999987 532           1356778899999998765

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=86.32  E-value=2.8  Score=39.21  Aligned_cols=95  Identities=16%  Similarity=0.104  Sum_probs=59.5

Q ss_pred             CCCEEEEE-CCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCccc
Q 018352           31 PYVTVCDL-YCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (357)
Q Consensus        31 ~~~~VLDl-GCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FD  107 (357)
                      ++.+||=+ |+|. |..+..+++....+|+++|.+++-++.+++.-.      . ..  .|... ++...+.. ....+|
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa------~-~v--i~~~~-~~~~~~~~~~~~g~D  219 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGA------D-IV--LNHKE-SLLNQFKTQGIELVD  219 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTC------S-EE--ECTTS-CHHHHHHHHTCCCEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC------c-EE--EECCc-cHHHHHHHhCCCCcc
Confidence            68899999 4553 555566666655599999999998888876321      1 11  22222 23222211 235799


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+....          ....+..+.++|++||+++..
T Consensus       220 vv~d~~g----------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          220 YVFCTFN----------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEEESSC----------HHHHHHHHHHHEEEEEEEEES
T ss_pred             EEEECCC----------chHHHHHHHHHhccCCEEEEE
Confidence            9976432          123466777899999999755

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=86.17  E-value=9.9  Score=33.94  Aligned_cols=113  Identities=14%  Similarity=0.012  Sum_probs=68.3

Q ss_pred             CCCEEEEECCCCC--hh-HHHHHHhcCCeEEEEeCC------------hHHHHHHHHHhHhcCCCceeEEEEcCCCCCch
Q 018352           31 PYVTVCDLYCGAG--VD-VDKWETALIANYIGIDVA------------TSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (357)
Q Consensus        31 ~~~~VLDlGCG~G--~~-l~k~~~~~~~~v~GiDiS------------~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~   95 (357)
                      .+.+||=.|++.|  .. +..+++.+ .+|+.+|.+            ...++.+.......  ..++.++.+|+.+..-
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEG-ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCCHHH
Confidence            3568898898765  22 23333334 589999987            67777666655443  2368899999987432


Q ss_pred             hhh----hhhcCCcccEEEEccchhhc--cCCHHHHH-----------HHHHHHHhcccCCcEEEEEe
Q 018352           96 ETQ----MQEKANQADLVCCFQHLQMC--FETEERAR-----------RLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus        96 ~~~----l~~~~~~FDlV~~~~~lh~~--fes~~~~~-----------~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ...    .....+..|+++.+.+....  ..+.++.+           .+++.+...++.+|.++.+.
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence            111    11123579999887654221  01233322           35566777778888887663

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=85.93  E-value=7.8  Score=30.20  Aligned_cols=100  Identities=11%  Similarity=-0.013  Sum_probs=55.4

Q ss_pred             CCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        32 ~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      +++|+=+|||. |..+.+.+.....+|+++|.+++.++..++..       .+.++.+|.........  .....+|+|+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~-------~~~~~~~d~~~~~~l~~--~~~~~~d~vi   74 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLED--AGIEDADMYI   74 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHH--TTTTTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc-------CcEEEEcCCCCHHHHHH--cCcccCCEEE
Confidence            46888899976 33333333333458999999988766554322       24567777654322110  1135689987


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +...      +. .....+..+.+.+.++ .++...-+
T Consensus        75 ~~~~------~~-~~~~~~~~~~~~~~~~-~ii~~~~~  104 (140)
T 1lss_A           75 AVTG------KE-EVNLMSSLLAKSYGIN-KTIARISE  104 (140)
T ss_dssp             ECCS------CH-HHHHHHHHHHHHTTCC-CEEEECSS
T ss_pred             EeeC------Cc-hHHHHHHHHHHHcCCC-EEEEEecC
Confidence            6532      11 2223444556667775 55555433

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=85.73  E-value=8.4  Score=34.14  Aligned_cols=109  Identities=15%  Similarity=0.096  Sum_probs=67.5

Q ss_pred             CCCEEEEECCCCC--h-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhcC
Q 018352           31 PYVTVCDLYCGAG--V-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKA  103 (357)
Q Consensus        31 ~~~~VLDlGCG~G--~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~~  103 (357)
                      .+.+||=.|++.|  . .+..+++.+ .+|+.+|.+++.++...+.+..     ++.++.+|+.+..-...    .....
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGG-AEVLLTGRNESNIARIREEFGP-----RVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhCC-----cceEEEccCCCHHHHHHHHHHHHHHh
Confidence            3568898898765  1 223333344 5999999999888877666522     57899999987432111    11123


Q ss_pred             CcccEEEEccchhhc--c--CCHHHHH-----------HHHHHHHhcccCCcEEEEE
Q 018352          104 NQADLVCCFQHLQMC--F--ETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~--f--es~~~~~-----------~~L~~i~~~LkpGG~fi~t  145 (357)
                      +..|+++.+.+....  +  .+.++.+           .+++.+...++.+|.++.+
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  137 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT  137 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            579998876643220  0  1333332           2455666777778888776

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=85.55  E-value=3  Score=39.43  Aligned_cols=98  Identities=16%  Similarity=0.122  Sum_probs=60.2

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC--Cchhhhhhh-cC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~--~~~~~~l~~-~~  103 (357)
                      +.++.+||-+|+|. |..+..+++. +..+|+++|.+++-++.+++.-.      . ..+  |...  .++...+.. ..
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa------~-~vi--~~~~~~~~~~~~v~~~~~  263 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA------T-DCL--NPRELDKPVQDVITELTA  263 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC------S-EEE--CGGGCSSCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC------c-EEE--ccccccchHHHHHHHHhC
Confidence            34789999999874 4455666665 44489999999998887754211      1 111  2221  122222211 12


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpG-G~fi~t  145 (357)
                      +.+|+|+..-+      .    ...+..+.++|++| |+++..
T Consensus       264 ~g~Dvvid~~G------~----~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          264 GGVDYSLDCAG------T----AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             SCBSEEEESSC------C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCccEEEECCC------C----HHHHHHHHHHhhcCCCEEEEE
Confidence            47999975432      1    12467778899999 998865

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=85.47  E-value=6.5  Score=31.84  Aligned_cols=104  Identities=7%  Similarity=-0.048  Sum_probs=60.0

Q ss_pred             CCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCC-hHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVA-TSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        32 ~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS-~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ..+|+=+|||. |..+.+.+......|+++|.+ ++.++....... .    .+.++.+|..+.......  .-...|+|
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-~----~~~~i~gd~~~~~~l~~a--~i~~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-D----NADVIPGDSNDSSVLKKA--GIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-T----TCEEEESCTTSHHHHHHH--TTTTCSEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-C----CCeEEEcCCCCHHHHHHc--ChhhCCEE
Confidence            35678888874 333333333344589999997 454444333222 1    367899998764432211  13578988


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ++...      + ......+....+.+.|...++...-+.
T Consensus        76 i~~~~------~-d~~n~~~~~~a~~~~~~~~ii~~~~~~  108 (153)
T 1id1_A           76 LALSD------N-DADNAFVVLSAKDMSSDVKTVLAVSDS  108 (153)
T ss_dssp             EECSS------C-HHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred             EEecC------C-hHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            76431      2 234445566667777777777765554

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=85.36  E-value=2.2  Score=40.49  Aligned_cols=98  Identities=16%  Similarity=0.180  Sum_probs=61.0

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCC--CCchhhhhhh-cC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC--AENFETQMQE-KA  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~--~~~~~~~l~~-~~  103 (357)
                      +.++.+||=+|+|. |..+..+++. +..+|+++|.+++-++.|++.-.      . .++  |..  ...+...+.. ..
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa------~-~vi--~~~~~~~~~~~~i~~~~~  261 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV------N-EFV--NPKDHDKPIQEVIVDLTD  261 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTC------C-EEE--CGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC------c-EEE--ccccCchhHHHHHHHhcC
Confidence            35788999999864 5555666665 55589999999998887754211      1 112  221  2223222211 23


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpG-G~fi~t  145 (357)
                      +.+|+|+...+      .    ...+..+.++|++| |+++..
T Consensus       262 gg~D~vid~~g------~----~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          262 GGVDYSFECIG------N----VSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             SCBSEEEECSC------C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCEEEECCC------C----HHHHHHHHHHhhccCCEEEEE
Confidence            48999976442      1    12467778899997 998866

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=85.21  E-value=2.5  Score=39.77  Aligned_cols=97  Identities=11%  Similarity=-0.008  Sum_probs=61.3

Q ss_pred             CCCCCEEEEECC-C-CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 018352           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlGC-G-~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~  105 (357)
                      +.++.+||-+|+ | -|..+..+++....+|+++|.+++.++.+++.-.      . ..  .|....++...+.. ..+.
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa------~-~~--~~~~~~~~~~~~~~~~~~g  235 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGA------K-RG--INYRSEDFAAVIKAETGQG  235 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC------S-EE--EETTTSCHHHHHHHHHSSC
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC------C-EE--EeCCchHHHHHHHHHhCCC
Confidence            347899999953 3 3555666666655599999999998888765311      1 11  23333333222211 1357


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+|+...+-.           .+....++|++||.++..
T Consensus       236 ~Dvvid~~g~~-----------~~~~~~~~l~~~G~iv~~  264 (353)
T 4dup_A          236 VDIILDMIGAA-----------YFERNIASLAKDGCLSII  264 (353)
T ss_dssp             EEEEEESCCGG-----------GHHHHHHTEEEEEEEEEC
T ss_pred             ceEEEECCCHH-----------HHHHHHHHhccCCEEEEE
Confidence            99998755321           356677899999998865

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=85.03  E-value=1.2  Score=41.07  Aligned_cols=89  Identities=11%  Similarity=-0.077  Sum_probs=56.2

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      +.++.+||=+|+|. |..+..+++....+|+++| |++-++.+++.-        +..+.-|     . ..+   ...+|
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lG--------a~~v~~d-----~-~~v---~~g~D  201 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRG--------VRHLYRE-----P-SQV---TQKYF  201 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHT--------EEEEESS-----G-GGC---CSCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcC--------CCEEEcC-----H-HHh---CCCcc
Confidence            34789999999963 5566666666445999999 998888876531        1212212     1 112   46799


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +|+-.-+-       +    .+..+.++|++||+++...
T Consensus       202 vv~d~~g~-------~----~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          202 AIFDAVNS-------Q----NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             EEECC------------------TTGGGEEEEEEEEEEC
T ss_pred             EEEECCCc-------h----hHHHHHHHhcCCCEEEEEe
Confidence            98753311       1    1255678999999998773

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=85.02  E-value=4.9  Score=34.78  Aligned_cols=100  Identities=8%  Similarity=-0.005  Sum_probs=59.9

Q ss_pred             EEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEc
Q 018352           34 TVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (357)
Q Consensus        34 ~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~  112 (357)
                      +|+=+|+|. |..+.+.+......|+++|.+++.++...+..       ...++.+|..+.......  .-...|+|++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-------~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~   72 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-------KATIIHGDGSHKEILRDA--EVSKNDVVVIL   72 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-------SSEEEESCTTSHHHHHHH--TCCTTCEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-------CCeEEEcCCCCHHHHHhc--CcccCCEEEEe
Confidence            577788775 33333333334458999999998877654332       356799998775432211  23578998764


Q ss_pred             cchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          113 QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       113 ~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .      .+ +.....+....+.+.+...++...-+.
T Consensus        73 ~------~~-d~~n~~~~~~a~~~~~~~~iia~~~~~  102 (218)
T 3l4b_C           73 T------PR-DEVNLFIAQLVMKDFGVKRVVSLVNDP  102 (218)
T ss_dssp             C------SC-HHHHHHHHHHHHHTSCCCEEEECCCSG
T ss_pred             c------CC-cHHHHHHHHHHHHHcCCCeEEEEEeCc
Confidence            3      12 223445555566666767766655444

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=85.01  E-value=14  Score=32.69  Aligned_cols=115  Identities=6%  Similarity=-0.036  Sum_probs=68.0

Q ss_pred             CCCEEEEECCC--CC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhc
Q 018352           31 PYVTVCDLYCG--AG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEK  102 (357)
Q Consensus        31 ~~~~VLDlGCG--~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~  102 (357)
                      .+.+||=.|++  .|  ..+.+.+.....+|+.+|.++...+.+.+...... ..++.++.+|+.+..-...    +...
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD-RNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS-SCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC-CCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            35688888876  44  33333333344589999998766655555444322 1268899999987542221    1112


Q ss_pred             CCcccEEEEccchhh--------ccCCHHHHH-----------HHHHHHHhcccCCcEEEEEe
Q 018352          103 ANQADLVCCFQHLQM--------CFETEERAR-----------RLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~--------~fes~~~~~-----------~~L~~i~~~LkpGG~fi~t~  146 (357)
                      .+..|+++.+.++..        .-.+.+...           .+++.+...++++|.++.+.
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  147 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT  147 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence            357899887654321        012333333           35667777888889888763

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=84.29  E-value=13  Score=33.55  Aligned_cols=113  Identities=14%  Similarity=0.064  Sum_probs=66.1

Q ss_pred             CCCEEEEECCCCC--h-hHHHHHHhcCCeEEEEeCChHH-HHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhc
Q 018352           31 PYVTVCDLYCGAG--V-DVDKWETALIANYIGIDVATSG-IGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK  102 (357)
Q Consensus        31 ~~~~VLDlGCG~G--~-~l~k~~~~~~~~v~GiDiS~~~-l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~  102 (357)
                      .+.+||=.|++.|  . .+..+++.+ .+|+.+|.+... .+.+.+..+..  ..++.++.+|+.+..-..    .....
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEG-ANIAIAYLDEEGDANETKQYVEKE--GVKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHTT--TCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            3568999998765  1 223333334 589999998753 33344433332  236889999998743211    11112


Q ss_pred             CCcccEEEEccchhhc---c--CCHHHHH-----------HHHHHHHhcccCCcEEEEEe
Q 018352          103 ANQADLVCCFQHLQMC---F--ETEERAR-----------RLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~---f--es~~~~~-----------~~L~~i~~~LkpGG~fi~t~  146 (357)
                      .+..|+++.+.+....   +  .+.++.+           .+++.+...++.+|.++.+.
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence            3579999876543221   1  1333332           35667777888899887663

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=83.88  E-value=14  Score=33.07  Aligned_cols=135  Identities=14%  Similarity=-0.038  Sum_probs=69.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCCEEEEECCCCC--h-hHHHHHHhcCCeEEEEeCC-hHHHHHHHHHhHhcCCCcee
Q 018352            8 RSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAG--V-DVDKWETALIANYIGIDVA-TSGIGEARDTWENQRKNFIA   83 (357)
Q Consensus         8 r~~~p~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G--~-~l~k~~~~~~~~v~GiDiS-~~~l~~A~~r~~~~~~~~~v   83 (357)
                      |.+++.....|-....+.....-.+.+||=.|++.|  . .+..+++.+ .+|+.+|.. ...++...+..+..+  .++
T Consensus         7 ~~~~~~~~~~~~~~~~mm~~~~l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~l~~~~--~~~   83 (271)
T 3v2g_A            7 HSSGVDLGTENLYFQSMMTSISLAGKTAFVTGGSRGIGAAIAKRLALEG-AAVALTYVNAAERAQAVVSEIEQAG--GRA   83 (271)
T ss_dssp             -------------CHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTT--CCE
T ss_pred             ccccccccccccchhhhccccCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcC--CcE
Confidence            344443333333222333333335678999998776  1 223333334 488888665 455555555554332  267


Q ss_pred             EEEEcCCCCCchhhh----hhhcCCcccEEEEccchhhc----cCCHHHHH-----------HHHHHHHhcccCCcEEEE
Q 018352           84 EFFEADPCAENFETQ----MQEKANQADLVCCFQHLQMC----FETEERAR-----------RLLQNVSSLLKPGGYFLG  144 (357)
Q Consensus        84 ~f~~~D~~~~~~~~~----l~~~~~~FDlV~~~~~lh~~----fes~~~~~-----------~~L~~i~~~LkpGG~fi~  144 (357)
                      .++.+|+.+..-...    .....+..|+++.+.+....    -.+.++.+           .+++.+...++.+|.++.
T Consensus        84 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~  163 (271)
T 3v2g_A           84 VAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIIT  163 (271)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEE
Confidence            889999987432111    11123579999887654220    01233322           356667777888898887


Q ss_pred             E
Q 018352          145 I  145 (357)
Q Consensus       145 t  145 (357)
                      +
T Consensus       164 i  164 (271)
T 3v2g_A          164 I  164 (271)
T ss_dssp             E
T ss_pred             E
Confidence            6

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=82.89  E-value=6.1  Score=36.64  Aligned_cols=98  Identities=12%  Similarity=0.081  Sum_probs=58.9

Q ss_pred             CCCCCEEEEECCCCCh-hHHHHHH-hcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYCGAGV-DVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~-~l~k~~~-~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      ..++.+||=+|+|.++ .+..+++ .+..+|+++|.+++-++.+++.-..       .  ..|..+.+..+.+..  ...
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~-------~--~i~~~~~~~~~~v~~~t~g~  231 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD-------V--TINSGDVNPVDEIKKITGGL  231 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS-------E--EEEC-CCCHHHHHHHHTTSS
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe-------E--EEeCCCCCHHHHhhhhcCCC
Confidence            5688999999998754 3344444 3577999999999887766554221       1  122223333332221  123


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|.++....      .    ...+....++|++||.++..
T Consensus       232 g~d~~~~~~~------~----~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          232 GVQSAIVCAV------A----RIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             CEEEEEECCS------C----HHHHHHHHHTEEEEEEEEEC
T ss_pred             CceEEEEecc------C----cchhheeheeecCCceEEEE
Confidence            5666654321      1    23466777899999998866

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=82.87  E-value=3.2  Score=42.87  Aligned_cols=120  Identities=14%  Similarity=0.242  Sum_probs=67.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-----------c--CCeEEEEeC---ChHHHHHHHHHhHh-----------c------
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-----------L--IANYIGIDV---ATSGIGEARDTWEN-----------Q------   77 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-----------~--~~~v~GiDi---S~~~l~~A~~r~~~-----------~------   77 (357)
                      +..+|||+|.|+|-......+.           .  .-+++.++.   +.+-+..|-..+..           -      
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            4469999999999654432221           1  147999998   66666554322111           0      


Q ss_pred             -------CCCceeEEEEcCCCCCchhhhhhh-cCCcccEEEEccchhhccCCHHH----HHHHHHHHHhcccCCcEEEEE
Q 018352           78 -------RKNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFETEER----ARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        78 -------~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FDlV~~~~~lh~~fes~~~----~~~~L~~i~~~LkpGG~fi~t  145 (357)
                             .....++++.+|+... + ..+.. ....+|+++.-.     |.....    -..++..+.++++|||.+. +
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~-l-~~~~~~~~~~~da~flD~-----f~p~~np~~w~~~~~~~l~~~~~~g~~~~-t  209 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTL-L-PTLDDSLNNQVDAWFLDG-----FAPAKNPDMWNEQLFNAMARMTRPGGTFS-T  209 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHH-G-GGCCGGGTTCEEEEEECS-----SCC--CCTTCSHHHHHHHHHHEEEEEEEE-E
T ss_pred             ceEEEecCCcEEEEEEccCHHHH-H-hhcccccCCceeEEEECC-----CCCCCChhhhhHHHHHHHHHHhCCCCEEE-e
Confidence                   0012456667776431 1 11110 146899997643     311110    2568899999999999754 4


Q ss_pred             eCCchHHHHHHHH
Q 018352          146 TPDSSTIWAKYQK  158 (357)
Q Consensus       146 ~pd~~~i~~~~~~  158 (357)
                      ......+.+.+.+
T Consensus       210 ~~~~~~vr~~l~~  222 (689)
T 3pvc_A          210 FTAAGFVRRGLQQ  222 (689)
T ss_dssp             SCCCHHHHHHHHH
T ss_pred             ccCcHHHHHHHHh
Confidence            4445566655554

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=82.65  E-value=12  Score=33.99  Aligned_cols=112  Identities=11%  Similarity=-0.046  Sum_probs=65.9

Q ss_pred             CCEEEEECCCC--C--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhcC
Q 018352           32 YVTVCDLYCGA--G--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKA  103 (357)
Q Consensus        32 ~~~VLDlGCG~--G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~~  103 (357)
                      +.+||=.|++.  |  ..+.+.+.....+|+.+|.++...+.+.+..+...   .+.++.+|+.+..-...    .....
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEEW  106 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            56889888753  3  33333333344589999999866555554443332   35789999987432111    11123


Q ss_pred             CcccEEEEccchhhc--------cCCHHHHH-----------HHHHHHHhcccCCcEEEEEe
Q 018352          104 NQADLVCCFQHLQMC--------FETEERAR-----------RLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~--------fes~~~~~-----------~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +..|+++.+.++...        -.+.++..           .+++.+...++.+|.++.+.
T Consensus       107 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is  168 (296)
T 3k31_A          107 GSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS  168 (296)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             CCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence            579999887654320        12333332           35566677777889888763

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=82.42  E-value=3.2  Score=33.90  Aligned_cols=103  Identities=12%  Similarity=0.124  Sum_probs=58.4

Q ss_pred             CCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc-CCcccE
Q 018352           31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQADL  108 (357)
Q Consensus        31 ~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~-~~~FDl  108 (357)
                      ++.+|+=+|||. |..+...+.....+|+++|.+++.++.++.   .    ..+.++.+|......   +... ...+|+
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~----~g~~~~~~d~~~~~~---l~~~~~~~ad~   87 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E----FSGFTVVGDAAEFET---LKECGMEKADM   87 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T----CCSEEEESCTTSHHH---HHTTTGGGCSE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c----CCCcEEEecCCCHHH---HHHcCcccCCE
Confidence            567999999986 444444444444589999999875443211   1    134566777654221   1111 246899


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      |++...      +.. ....+..+.+.+.+...++...-+..
T Consensus        88 Vi~~~~------~~~-~~~~~~~~~~~~~~~~~iv~~~~~~~  122 (155)
T 2g1u_A           88 VFAFTN------DDS-TNFFISMNARYMFNVENVIARVYDPE  122 (155)
T ss_dssp             EEECSS------CHH-HHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred             EEEEeC------CcH-HHHHHHHHHHHHCCCCeEEEEECCHH
Confidence            876442      222 33344445555666667776655543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=81.48  E-value=17  Score=33.44  Aligned_cols=84  Identities=13%  Similarity=0.019  Sum_probs=55.4

Q ss_pred             CCCEEEEECCCCCh---hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 018352           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (357)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~  103 (357)
                      .+.+||=.|++.|-   .+..++..+ .+|+++|.+.+.++.+.+.+.......++.++.+|+.+..-..    ......
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G-~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQG-CKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            35689999987762   223333334 4899999999998888777655433336889999998743211    111223


Q ss_pred             CcccEEEEccch
Q 018352          104 NQADLVCCFQHL  115 (357)
Q Consensus       104 ~~FDlV~~~~~l  115 (357)
                      +..|+++.+.++
T Consensus        86 g~id~lv~nAg~   97 (319)
T 3ioy_A           86 GPVSILCNNAGV   97 (319)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            678999887654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=81.29  E-value=15  Score=32.95  Aligned_cols=83  Identities=8%  Similarity=-0.060  Sum_probs=53.9

Q ss_pred             CCCEEEEECCCCC--h-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC-chhh----hhhhc
Q 018352           31 PYVTVCDLYCGAG--V-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFET----QMQEK  102 (357)
Q Consensus        31 ~~~~VLDlGCG~G--~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~-~~~~----~l~~~  102 (357)
                      .+.+||=.|++.|  . .+..+++.+ .+|++++.+...++.+.+.+.... ..++.++.+|+.+. .-..    .+...
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNG-IMVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            3568888887765  1 223333334 599999999998888777665432 22688999999885 3211    12122


Q ss_pred             CCcccEEEEccch
Q 018352          103 ANQADLVCCFQHL  115 (357)
Q Consensus       103 ~~~FDlV~~~~~l  115 (357)
                      .+..|+++.+.++
T Consensus        89 ~g~iD~lv~nAg~  101 (311)
T 3o26_A           89 FGKLDILVNNAGV  101 (311)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            3579999987764

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=81.21  E-value=2.3  Score=40.19  Aligned_cols=96  Identities=21%  Similarity=0.125  Sum_probs=58.0

Q ss_pred             CC-CCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SH-PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~-~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      .. ++.+||=+|+|. |..+..+++....+|+++|.+++.++.+++.+..     . .++  |..+.   +.+....+.+
T Consensus       184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa-----~-~v~--~~~~~---~~~~~~~~~~  252 (366)
T 1yqd_A          184 LDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGA-----D-SFL--VSRDQ---EQMQAAAGTL  252 (366)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCC-----S-EEE--ETTCH---HHHHHTTTCE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC-----c-eEE--eccCH---HHHHHhhCCC
Confidence            44 789999999763 4455566665445899999999887776543321     1 112  22221   1111123479


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|+.......          .++.+.++|++||+++..
T Consensus       253 D~vid~~g~~~----------~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          253 DGIIDTVSAVH----------PLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             EEEEECCSSCC----------CSHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCcHH----------HHHHHHHHHhcCCEEEEE
Confidence            99986553221          134456788999998865

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=81.00  E-value=15  Score=34.00  Aligned_cols=105  Identities=13%  Similarity=0.064  Sum_probs=60.3

Q ss_pred             CCEEEEECCCC-ChhHH-HHHHhcCC-eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           32 YVTVCDLYCGA-GVDVD-KWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        32 ~~~VLDlGCG~-G~~l~-k~~~~~~~-~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..+|.=||+|. |+.+. .+...+.. +|+++|.+++.++.+.+.    +..  .. ...|.... .       -...|+
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~----G~~--~~-~~~~~~~~-~-------~~~aDv   97 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GII--DE-GTTSIAKV-E-------DFSPDF   97 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSC--SE-EESCTTGG-G-------GGCCSE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC----CCc--ch-hcCCHHHH-h-------hccCCE
Confidence            36899999996 43333 34344432 899999999888776532    110  01 11222100 1       145899


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHH
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~  158 (357)
                      |+..-..       .....+++++...|++|.+++-+......+.+.+.+
T Consensus        98 Vilavp~-------~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~  140 (314)
T 3ggo_A           98 VMLSSPV-------RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN  140 (314)
T ss_dssp             EEECSCG-------GGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH
T ss_pred             EEEeCCH-------HHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHH
Confidence            8765422       235567888989999987665433333344555543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=80.85  E-value=15  Score=33.24  Aligned_cols=112  Identities=14%  Similarity=0.072  Sum_probs=65.7

Q ss_pred             CCCEEEEECCCCC--h-hHHHHHHhcCCeEEEEeCC--hHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhh
Q 018352           31 PYVTVCDLYCGAG--V-DVDKWETALIANYIGIDVA--TSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQE  101 (357)
Q Consensus        31 ~~~~VLDlGCG~G--~-~l~k~~~~~~~~v~GiDiS--~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~  101 (357)
                      .+.+||=.|++.|  . .+..+++.+ .+|+.+|.+  ...++...+..+..+  .++.++.+|+.+..-..    ....
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREG-ADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            3568999998765  1 223333334 589999887  344444444444332  36788999998743211    1111


Q ss_pred             cCCcccEEEEccchhhc---c--CCHHHHH-----------HHHHHHHhcccCCcEEEEE
Q 018352          102 KANQADLVCCFQHLQMC---F--ETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~---f--es~~~~~-----------~~L~~i~~~LkpGG~fi~t  145 (357)
                      ..+..|+++.+.+....   +  .+.++.+           .+++.+...++.+|.++.+
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i  184 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT  184 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence            23579999887654221   1  1233332           3566677788888988876

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=80.83  E-value=11  Score=33.99  Aligned_cols=104  Identities=15%  Similarity=0.075  Sum_probs=53.9

Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHHcCCCCCEEEEECCCCC--h-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCC
Q 018352            3 VLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAG--V-DVDKWETALIANYIGIDVATSGIGEARDTWENQRK   79 (357)
Q Consensus         3 ~~~~~r~~~p~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G--~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~   79 (357)
                      ++|.++++.+.+.+.  .++.+    .-.+.+||=.|++.|  . .+..+++.+ .+|+.+|.+.+.++.+.+.+...  
T Consensus         5 ~~~~~~~~~~~~~~~--~~~m~----~~~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~--   75 (283)
T 3v8b_A            5 HHHSSGVDLGTENLY--FQSMM----NQPSPVALITGAGSGIGRATALALAADG-VTVGALGRTRTEVEEVADEIVGA--   75 (283)
T ss_dssp             ----------------------------CCCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHTTT--
T ss_pred             cCCccccccccchhh--hhhhc----CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhc--
Confidence            466667776665532  22221    124578898998776  2 223333334 59999999999888877766543  


Q ss_pred             CceeEEEEcCCCCCchhh----hhhhcCCcccEEEEccch
Q 018352           80 NFIAEFFEADPCAENFET----QMQEKANQADLVCCFQHL  115 (357)
Q Consensus        80 ~~~v~f~~~D~~~~~~~~----~l~~~~~~FDlV~~~~~l  115 (357)
                      ..++.++.+|+.+..-..    ......+..|+++.+.+.
T Consensus        76 ~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~  115 (283)
T 3v8b_A           76 GGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGI  115 (283)
T ss_dssp             TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            236889999998743211    111123579999887654

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=80.12  E-value=3.8  Score=38.30  Aligned_cols=94  Identities=21%  Similarity=0.028  Sum_probs=59.1

Q ss_pred             CCCCCEEEEECC-C-CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGC-G-~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||-+|+ | -|..+..+++....+|+++ .+++-++.+++.-        +..+  | ...++...+..  ...
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lG--------a~~i--~-~~~~~~~~~~~~~~~~  215 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLG--------ATPI--D-ASREPEDYAAEHTAGQ  215 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHT--------SEEE--E-TTSCHHHHHHHHHTTS
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcC--------CCEe--c-cCCCHHHHHHHHhcCC
Confidence            347899999995 3 3556666666655599999 8888877775431        1222  2 22333222211  235


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+..-+      .     ..+..+.++|++||.++..
T Consensus       216 g~D~vid~~g------~-----~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          216 GFDLVYDTLG------G-----PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             CEEEEEESSC------T-----HHHHHHHHHEEEEEEEEES
T ss_pred             CceEEEECCC------c-----HHHHHHHHHHhcCCeEEEE
Confidence            7999976442      1     2466777899999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	357
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	6e-43
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	7e-10
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	7e-08
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	2e-07
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	4e-06
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	4e-06
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	1e-04
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	4e-04
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	0.001
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.002
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	0.003

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score =  147 bits (371), Expect = 6e-43
 Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 29/269 (10%)

Query: 19  FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR 78
           F K  LI++Y+    +V DL CG G D+ K+E A I  Y G+D+A   I +AR    N +
Sbjct: 12  FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 71

Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138
           + F   F   D    + +   +        +         F T E      +N++  L+P
Sbjct: 72  RRFKVFFRAQDSYGRHMDLGKEFDV-----ISSQFSFHYAFSTSESLDIAQRNIARHLRP 126

Query: 139 GGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLF 198
           GGYF+   P    I  +Y++   +                   + Y I  E  E+     
Sbjct: 127 GGYFIMTVPSRDVILERYKQGRMSN------------------DFYKIELEKMEDVPMES 168

Query: 199 GKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSA 258
            ++Y+    + ++   +  V F  ++   +  GL  VE +   +FY+D       +    
Sbjct: 169 VREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGRRNPELSKKM 228

Query: 259 GPNLIDPRGRLLPRSYDVLGLYSTFIFQK 287
           G   +           +V+G+Y   +F+K
Sbjct: 229 GLGCLT------REESEVVGIYEVVVFRK 251

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.9 bits (136), Expect = 7e-10
 Identities = 43/259 (16%), Positives = 79/259 (30%), Gaps = 30/259 (11%)

Query: 12  THHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR 71
           T  R  E+    L  +  H    V D+ CG GVD          +   +D +   +  A 
Sbjct: 37  TRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIML-VEEGFSVTSVDASDKMLKYAL 95

Query: 72  DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC----FQHLQMCFETEERARR 127
               N+RK    + +  +        +     +  D V C    F HL      +   R 
Sbjct: 96  KERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRL 155

Query: 128 LLQNVSSLLKPGGYFLGITPDSSTIWAK---------YQKNVEAYHNRSSSMKPNLVPNC 178
            L+N++S+++PGG  +    +   I +          Y K+       +S +  N   + 
Sbjct: 156 ALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHM 215

Query: 179 IRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI- 237
           +  + Y +              K++L         +       S   L +EA     +  
Sbjct: 216 VTLD-YTVQVPGAGRDGAPGFSKFRL---------SYYPHCLASFTELVQEAFGGRCQHS 265

Query: 238 -----QNLNEFYDDNRALF 251
                +            F
Sbjct: 266 VLGDFKPYRPGQAYVPCYF 284

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.5 bits (119), Expect = 7e-08
 Identities = 37/233 (15%), Positives = 70/233 (30%), Gaps = 23/233 (9%)

Query: 7   PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSG 66
            R         +F +    +        V DL CG G+   +            +     
Sbjct: 17  RRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLEL----------AERGYEV 66

Query: 67  IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERAR 126
           +G        +     A+           +       N+ D V  F    + +  EE  R
Sbjct: 67  VGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFST-IMYFDEEDLR 125

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVP--NCIRSESY 184
           +L   V+  LKPGG F+   P     W    ++     N     +  ++     +     
Sbjct: 126 KLFSKVAEALKPGGVFITDFPC----WFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQ 181

Query: 185 VITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
            + F+   +     G+       ++++       + P  +RL  E   E V+I
Sbjct: 182 KLRFKRLVQILRPNGEVKAFLVDDELNI------YTPREVRLLAEKYFEKVKI 228

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 31/181 (17%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
             +L   A+            T+ D+  G  V       +   +    D       E   
Sbjct: 38  PWKLRCLAQ--TFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGR 95

Query: 73  TWENQRKNF-----------------------------IAEFFEADPCAENFETQMQEKA 103
             + +   F                             +      D              
Sbjct: 96  WLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAP 155

Query: 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAY 163
             AD +     L+         +R L ++++LL+PGG+ L I     + +   +  +   
Sbjct: 156 LPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVV 215

Query: 164 H 164
            
Sbjct: 216 P 216

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 26/185 (14%), Positives = 48/185 (25%), Gaps = 29/185 (15%)

Query: 7   PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSG 66
           P +E+    L    K            T+ D+  G  +           +    D     
Sbjct: 29  PEAEMLKFNLECLHK--TFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRN 86

Query: 67  IGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKA---------------------- 103
             E     + +   +         C  E    + +EK                       
Sbjct: 87  REELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLA 146

Query: 104 ----NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN 159
                 AD V     ++    + +  R  L N++SLLKPGG+ +         +   ++ 
Sbjct: 147 PAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKRE 206

Query: 160 VEAYH 164
                
Sbjct: 207 FSCVA 211

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 28/198 (14%), Positives = 57/198 (28%), Gaps = 19/198 (9%)

Query: 13  HHRLYEFAKTALIKIYS-----HPYVTVCDLYCGAGV-------DVDKWETALIANYIGI 60
           H  + EF    L  I          + +  +  GAG         V      +  N   +
Sbjct: 17  HQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVV 76

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQADLVCCFQHLQMC 118
           + +   I + ++           +F      +  ++++M E  +  + D +   Q L   
Sbjct: 77  EPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV 136

Query: 119 FETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNC 178
            +        L+   SLL      L I    S+ W K  K           +   +  + 
Sbjct: 137 KDIPA----TLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKY-GSRFPQDDLCQYITSDD 191

Query: 179 IRSESYVITFEVEEEKFP 196
           +      +  + E     
Sbjct: 192 LTQMLDNLGLKYECYDLL 209

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 22/230 (9%)

Query: 8   RSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGI 67
           R+++ + +  +F         +  +    DL CG G       T  +        A    
Sbjct: 15  RADVDYKKWSDFII-EKCVENNLVFDDYLDLACGTG-----NLTENLCPKFKNTWAVDLS 68

Query: 68  GEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARR 127
            E     EN+ ++   +   A     N     +          C           +  ++
Sbjct: 69  QEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLI-----TCCLDSTNYIIDSDDLKK 123

Query: 128 LLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVIT 187
             + VS+ LK GG F+        +      N   Y +                  Y+  
Sbjct: 124 YFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISF 183

Query: 188 FEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
           F  + E +  F ++++ +                 + +  +   L  ++ 
Sbjct: 184 FVRDGEFYKRFDEEHEERA-----------YKEEDIEKYLKHGQLNILDK 222

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 11/135 (8%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            + D  CG G     +   ++   +      +GI          R+ F    ++++    
Sbjct: 30  HIVDYGCGYG-----YLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFL-- 82

Query: 94  NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153
             +    E  ++ D+  C                +LQ +   +K GG  +   P   +  
Sbjct: 83  EGDATEIELNDKYDIAICH----AFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNM 138

Query: 154 AKYQKNVEAYHNRSS 168
           A Y  + E       
Sbjct: 139 ASYLLDGEKQSEFIQ 153

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 7/143 (4%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI 82
           AL    S     V ++  G  +   K + A I  +  I+         RD W  ++ + +
Sbjct: 45  ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKV 103

Query: 83  AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142
                                   D     +      +       +  +   LLKPGG  
Sbjct: 104 IPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNF----IKNHAFRLLKPGGVL 159

Query: 143 L--GITPDSSTIWAKYQKNVEAY 163
               +T     + +KY      +
Sbjct: 160 TYCNLTSWGELMKSKYSDITIMF 182

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 30/165 (18%), Positives = 49/165 (29%), Gaps = 22/165 (13%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
           HH L    KTA  +        V D+  GAG       +  +   IG+D           
Sbjct: 2   HHSLGLMIKTAECR----AEHRVLDIGAGAG-HTALAFSPYVQECIGVDA---------- 46

Query: 73  TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV 132
             +   +   +   E       F+    E     D        +         R+ ++ V
Sbjct: 47  -TKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREV 105

Query: 133 SSLLKPGGYFLGIT------PDSSTIWAKYQKNVEAYHNRSSSMK 171
           + +LK  G FL +       P          +  +  H R SS+ 
Sbjct: 106 ARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLS 150

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 21/184 (11%), Positives = 46/184 (25%), Gaps = 24/184 (13%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEAR 71
           +  L +     L +        V D+ CG G     +  AL      G+D          
Sbjct: 66  YQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLD---------- 115

Query: 72  DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQN 131
                      A+ +           ++       D +                    + 
Sbjct: 116 --VSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-----------CKAEE 162

Query: 132 VSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191
           ++ ++KPGG+ +  TP    +           H  +   +        +S        + 
Sbjct: 163 LARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCYPMRLR 222

Query: 192 EEKF 195
            ++ 
Sbjct: 223 GDEA 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	357
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	100.0
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.84
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.83
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.83
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.82
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.79
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.79
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.78
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.78
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.77
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.77
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.76
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.75
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.75
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.75
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.74
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.74
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.73
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.73
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.7
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.7
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.7
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.69
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.66
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.63
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.61
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.6
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.6
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.58
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.57
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.55
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.52
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.49
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.49
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.48
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.48
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.45
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.45
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.44
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.43
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.42
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.41
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.39
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.38
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.37
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.36
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.33
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.3
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.27
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.25
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.23
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.22
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.21
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.2
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.2
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.16
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.15
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.11
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.05
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.04
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.04
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.04
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.98
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.96
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.91
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.9
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.88
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.85
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.8
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.79
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.71
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.69
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.6
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.6
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.57
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.48
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.43
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.39
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.33
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.31
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.3
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.23
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.21
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.21
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.2
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.15
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.14
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.13
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.11
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.07
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.04
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.02
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.0
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.93
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.89
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.72
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.64
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.59
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.53
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.5
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.54
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.46
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.25
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.12
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.1
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.99
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.95
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.84
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.67
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.47
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.4
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.17
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.11
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.01
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	94.71
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.66
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.6
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.32
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.16
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	94.15
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.62
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.6
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	93.53
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.34
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.24
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.19
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.93
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	92.6
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.04
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.75
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.05
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.48
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	89.87
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.35
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	88.9
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	88.84
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.32
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	87.73
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	87.73
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.44
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	86.64
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	86.28
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	86.19
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	85.97
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.9
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	85.21
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	84.91
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	84.46
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	82.27
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	81.9
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	80.97
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	80.05

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=100.00  E-value=1.7e-47  Score=353.60  Aligned_cols=247  Identities=26%  Similarity=0.447  Sum_probs=218.4

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC
Q 018352           13 HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA   92 (357)
Q Consensus        13 ~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~   92 (357)
                      ++.++||||+.||+++++++.+|||||||+|+++.+|++.+.++|+|+|+|+.||+.|++|++..+...++.|.++|+..
T Consensus         6 ~r~~~N~vK~~lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~   85 (252)
T d1ri5a_           6 IRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG   85 (252)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT
T ss_pred             HHHHHHHHHHHHHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhh
Confidence            56789999999999999999999999999999999999988889999999999999999999887667789999999977


Q ss_pred             CchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCC
Q 018352           93 ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKP  172 (357)
Q Consensus        93 ~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~  172 (357)
                      ..+.     ..++||+|+|++++||++.+.++.+.++++++++|||||+|++++||.+.+..++.+.             
T Consensus        86 ~~~~-----~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~-------------  147 (252)
T d1ri5a_          86 RHMD-----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQG-------------  147 (252)
T ss_dssp             SCCC-----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHT-------------
T ss_pred             hccc-----ccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhc-------------
Confidence            6542     2578999999999999999999999999999999999999999999999998877631             


Q ss_pred             CCCCCccCCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHHH
Q 018352          173 NLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFA  252 (357)
Q Consensus       173 ~~fgn~i~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~~  252 (357)
                       .++    ++.|.++++.........+..|.|++.+.+.+++||+++++.|+++|+++||++++..+|.+||+++.....
T Consensus       148 -~~~----~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~~f~~~~~~~~~~~~  222 (252)
T d1ri5a_         148 -RMS----NDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGRRNP  222 (252)
T ss_dssp             -CCB----CSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHHHHHHHHHHTCH
T ss_pred             -ccC----CceEEEecccccCCcCcCceEEEEEcccccccCcccccCHHHHHHHHHHcCCEEEEEecHHHHHHHHhhhCH
Confidence             233    357898887655555567889999999998889999999999999999999999999999999998877666


Q ss_pred             HHHHhcCCCCCCCCCCCChhHHHHHhhheeEEEEec
Q 018352          253 GMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKP  288 (357)
Q Consensus       253 ~~~~~~~~~~~~~~g~l~~~e~e~~~lY~~f~F~K~  288 (357)
                      .+.+.++      .+.|+++|||+++||++|+|+|+
T Consensus       223 ~~~~~~~------~~~l~~~e~e~~~ly~~fiF~K~  252 (252)
T d1ri5a_         223 ELSKKMG------LGCLTREESEVVGIYEVVVFRKL  252 (252)
T ss_dssp             HHHHSSS------CCCCCHHHHHHHTTEEEEEEEEC
T ss_pred             HHHHhcC------CCcCCHHHHHHHHhhhEEEEEEC
Confidence            6666654      37789999999999999999995

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.84  E-value=1.2e-19  Score=168.39  Aligned_cols=110  Identities=12%  Similarity=0.008  Sum_probs=95.6

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++++.+|||||||+|+.+..+++....+|+|+|+|+.|++.|+++.+..+...+++|+++|+...++      ++++||+
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~------~~~sfD~  138 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC------EDNSYDF  138 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS------CTTCEEE
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccc------cccccch
Confidence            5688999999999999888887765569999999999999999998877666689999999988777      5689999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|..++|| +.+   ...+++++.++|||||+|+++.+.
T Consensus       139 V~~~~~l~h-~~d---~~~~l~~~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1         139 IWSQDAFLH-SPD---KLKVFQECARVLKPRGVMAITDPM  174 (282)
T ss_dssp             EEEESCGGG-CSC---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hhccchhhh-ccC---HHHHHHHHHHhcCCCcEEEEEEee
Confidence            999999998 443   567899999999999999988554

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.83  E-value=4.8e-20  Score=167.28  Aligned_cols=117  Identities=19%  Similarity=0.251  Sum_probs=97.6

Q ss_pred             HHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      +..+..++.+|||+|||+|..+..+++.+. +++|+|+|+.||+.|+++.+..+.  +++|+++|+...++       .+
T Consensus        31 ~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~-------~~  100 (246)
T d1y8ca_          31 CVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI-------NR  100 (246)
T ss_dssp             HHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC-------SC
T ss_pred             HHHhCCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc--cceeeccchhhhcc-------cc
Confidence            333445668999999999999988877665 899999999999999999876543  78999999977554       46


Q ss_pred             cccEEEEcc-chhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          105 QADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       105 ~FDlV~~~~-~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      +||+|+|.+ +++| +.+.+++.++|++++++|||||.|++.+.+...+
T Consensus       101 ~fD~i~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  148 (246)
T d1y8ca_         101 KFDLITCCLDSTNY-IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKL  148 (246)
T ss_dssp             CEEEEEECTTGGGG-CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHH
T ss_pred             cccccceeeeeeec-cCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHH
Confidence            899999874 6787 6789999999999999999999999987776543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=6.3e-20  Score=162.85  Aligned_cols=119  Identities=24%  Similarity=0.321  Sum_probs=101.9

Q ss_pred             HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      .++.++++++.+|||||||+|..+..+++.+ .+|+|+|+|+.|++.|+++....+.  .+.++++|+...++      +
T Consensus        29 ~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~-~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~------~   99 (226)
T d1ve3a1          29 PLLMKYMKKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSF------E   99 (226)
T ss_dssp             HHHHHSCCSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCS------C
T ss_pred             HHHHHhcCCCCEEEEECCCcchhhhhHhhhh-cccccccccccchhhhhhhhccccc--cccccccccccccc------c
Confidence            3677888999999999999998888877654 5899999999999999999876543  57889999988776      6


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                      +++||+|+|..++|| + +..+..++|+++.++|||||+|++.+++...+
T Consensus       100 ~~~fD~I~~~~~l~~-~-~~~d~~~~l~~i~~~LkpgG~lii~~~~~~~~  147 (226)
T d1ve3a1         100 DKTFDYVIFIDSIVH-F-EPLELNQVFKEVRRVLKPSGKFIMYFTDLREL  147 (226)
T ss_dssp             TTCEEEEEEESCGGG-C-CHHHHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred             CcCceEEEEecchhh-C-ChhHHHHHHHHHHHHcCcCcEEEEEEcCchhh
Confidence            789999999999999 5 45668899999999999999999998886544

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.82  E-value=1.4e-19  Score=161.83  Aligned_cols=107  Identities=18%  Similarity=0.259  Sum_probs=90.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++++.+|||||||+|..+..+++.+ .+|+|+|+|+.|++.|+++.+..+. .+++|+++|+...++      ++++||+
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~------~~~~fD~   84 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPF------TDERFHI   84 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCS------CTTCEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHhC-CEEEEEECCHHHHhhhhhccccccc-ccccccccccccccc------ccccccc
Confidence            5678999999999998887776554 5999999999999999999876543 378999999988777      5789999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      |+|..++|| +.   +...++++++++|||||++++..+
T Consensus        85 v~~~~~l~~-~~---d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          85 VTCRIAAHH-FP---NPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             EEEESCGGG-CS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccc-cC---CHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999999999 53   366789999999999999998743

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.79  E-value=3.9e-19  Score=159.33  Aligned_cols=125  Identities=19%  Similarity=0.150  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEc
Q 018352           12 THHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA   88 (357)
Q Consensus        12 p~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~   88 (357)
                      |.++...+.-..+++++.+++.+|||||||+|..+..+++.   +..+|+|+|+|+.||+.|+++.+..+...++++..+
T Consensus        20 P~Y~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~   99 (225)
T d1im8a_          20 PGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN   99 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECS
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccc
Confidence            43444445556677888899999999999999888777764   456999999999999999999887666667888888


Q ss_pred             CCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352           89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus        89 D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |....+        ...+|+|+|.+++|+ + +.++..++|++++++|||||.|++..
T Consensus       100 d~~~~~--------~~~~d~i~~~~~l~~-~-~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         100 DIRHVE--------IKNASMVILNFTLQF-L-PPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             CTTTCC--------CCSEEEEEEESCGGG-S-CGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhccc--------cccceeeEEeeeccc-c-ChhhHHHHHHHHHHhCCCCceeeccc
Confidence            876543        367999999999999 4 56678899999999999999999873

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=5.3e-19  Score=160.02  Aligned_cols=109  Identities=28%  Similarity=0.417  Sum_probs=92.2

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..+..+|||||||+|..+..+++.+. +|+|+|+|+.||+.|+++.+..+.  +++|+++|+.+.++       .++||+
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~-------~~~fD~  108 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF-------KNEFDA  108 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC-------CSCEEE
T ss_pred             CCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc--cchheehhhhhccc-------ccccch
Confidence            34677999999999999888887765 899999999999999999876533  78999999977665       368999


Q ss_pred             EEEccc-hhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCFQH-LQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~~-lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |+|.++ +++ + +.++..++|++++++|||||+|++.+++.
T Consensus       109 I~~~~~~~~~-~-~~~~~~~~L~~~~~~LkpgG~lii~~~~~  148 (251)
T d1wzna1         109 VTMFFSTIMY-F-DEEDLRKLFSKVAEALKPGGVFITDFPCW  148 (251)
T ss_dssp             EEECSSGGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred             Hhhhhhhhhc-C-ChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence            999764 555 4 67788999999999999999999998774

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=5.1e-19  Score=159.36  Aligned_cols=105  Identities=20%  Similarity=0.289  Sum_probs=91.3

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++++.+|||||||+|..+..+++.. .+|+|+|+|+.||+.|+++....+. .++.|+++|+.+.++      ++++||+
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~------~~~~fD~   85 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPF------PDDSFDI   85 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCS------CTTCEEE
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccccc-ccccccccccccccc------cccccce
Confidence            5689999999999998888776654 6999999999999999999876543 269999999988777      5789999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|..++|| +.   +...+++++.++|||||+++++
T Consensus        86 v~~~~~l~~-~~---d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          86 ITCRYAAHH-FS---DVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             EEEESCGGG-CS---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeeeceeec-cc---CHHHHHHHHHHeeCCCcEEEEE
Confidence            999999999 43   3678899999999999999986

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.1e-19  Score=156.73  Aligned_cols=107  Identities=13%  Similarity=0.130  Sum_probs=91.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||||||+|..+..++.....+|+|+|+|+.||+.|+++++.... .+++|+++|+...++      ..++||+|+
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~------~~~~fD~I~  132 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTP------EPDSYDVIW  132 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCC------CSSCEEEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-ccccccccccccccc------ccccccccc
Confidence            5679999999999888887766677999999999999999999876432 367999999987665      568999999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |.+++|| + +.++..+++++++++|||||.++++.
T Consensus       133 ~~~~l~h-~-~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         133 IQWVIGH-L-TDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             EESCGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccc-c-hhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            9999999 5 44567889999999999999999874

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=6e-18  Score=157.39  Aligned_cols=183  Identities=15%  Similarity=0.170  Sum_probs=130.4

Q ss_pred             HHHHc-CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        24 Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      ++.+. ++++.+|||||||+|+.+..+++....+|+|+|+|+++++.|+++.+..+....+.+...|...         .
T Consensus        44 ~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~---------~  114 (280)
T d2fk8a1          44 NLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED---------F  114 (280)
T ss_dssp             HHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG---------C
T ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh---------h
Confidence            44443 5689999999999999888877765569999999999999999999887766678888777533         3


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC---chHHHHHHHHhHHhhhcCCCCCCCCCCCCcc
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD---SSTIWAKYQKNVEAYHNRSSSMKPNLVPNCI  179 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd---~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i  179 (357)
                      +++||.|++..++++ + .......++++++++|||||++++.+.-   ......+.....                   
T Consensus       115 ~~~fD~i~si~~~eh-~-~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~-------------------  173 (280)
T d2fk8a1         115 AEPVDRIVSIEAFEH-F-GHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLS-------------------  173 (280)
T ss_dssp             CCCCSEEEEESCGGG-T-CGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHH-------------------
T ss_pred             ccchhhhhHhhHHHH-h-hhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccc-------------------
Confidence            578999999998877 3 3456789999999999999999986322   111110000000                   


Q ss_pred             CCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHHHHH
Q 018352          180 RSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGM  254 (357)
Q Consensus       180 ~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~~~~  254 (357)
                              ++.  .....|-.+|.|        ...++.+.+.+.++++++||+++...+|...|......|...
T Consensus       174 --------~~~--~~~~dfI~kyif--------Pgg~lPS~~~l~~~~e~aGf~v~~~~~~~~hYa~TL~~W~~~  230 (280)
T d2fk8a1         174 --------FET--ARFIKFIVTEIF--------PGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDT  230 (280)
T ss_dssp             --------HHH--HHHHHHHHHHTS--------TTCCCCCHHHHHHHHHHTTCBCCCCEECHHHHHHHHHHHHHH
T ss_pred             --------ccc--ccccchhhhhcc--------CCCcccchHhhhhhHHhhccccceeeecccCHHHHHHHHHHH
Confidence                    000  000113344544        112577889999999999999999999988888765555443

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.7e-18  Score=157.21  Aligned_cols=140  Identities=17%  Similarity=0.123  Sum_probs=102.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHHcCC---CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCce-
Q 018352            7 PRSELTHHRLYEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-   82 (357)
Q Consensus         7 ~r~~~p~~~~~nwvks~Li~~~~~---~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~-   82 (357)
                      .....+.....+|+...+.+.+..   ++.+|||||||+|..+..++..+..+|+|+|+|+.||+.|+++++.....+. 
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~  103 (257)
T d2a14a1          24 DGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDW  103 (257)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCC
T ss_pred             CccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchh
Confidence            344455566778888888776653   5679999999999877666666666899999999999999998865432110 


Q ss_pred             ----------------------------eEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHh
Q 018352           83 ----------------------------AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS  134 (357)
Q Consensus        83 ----------------------------v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~  134 (357)
                                                  ......+........  ....++||+|++.+++|++....++...+++++++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~  181 (257)
T d2a14a1         104 TPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLA--PAVLPLADCVLTLLAMECACCSLDAYRAALCNLAS  181 (257)
T ss_dssp             HHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTT--TCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccc--cccCCcccEEeehhhHHHhcccHHHHHHHHHHHHh
Confidence                                        012222222221111  11468899999999999987788899999999999


Q ss_pred             cccCCcEEEEEeCC
Q 018352          135 LLKPGGYFLGITPD  148 (357)
Q Consensus       135 ~LkpGG~fi~t~pd  148 (357)
                      +|||||+|+++.+.
T Consensus       182 ~LkpGG~li~~~~~  195 (257)
T d2a14a1         182 LLKPGGHLVTTVTL  195 (257)
T ss_dssp             TEEEEEEEEEEEES
T ss_pred             ccCCCcEEEEEEec
Confidence            99999999988653

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=1.5e-18  Score=155.87  Aligned_cols=116  Identities=16%  Similarity=0.164  Sum_probs=93.7

Q ss_pred             HHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh
Q 018352           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (357)
Q Consensus        22 s~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~  101 (357)
                      ..++.++.+++.+|||+|||+|..+..+++.+ .+|+|+|+|+.||+.|+++..       ..++++|+...++      
T Consensus        33 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~l~~a~~~~~-------~~~~~~~~~~l~~------   98 (246)
T d2avna1          33 GSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGV-------KNVVEAKAEDLPF------   98 (246)
T ss_dssp             HHHHHHHCCSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTC-------SCEEECCTTSCCS------
T ss_pred             HHHHHHhcCCCCEEEEECCCCchhcccccccc-eEEEEeecccccccccccccc-------ccccccccccccc------
Confidence            34566777888999999999998888776654 599999999999999998743       2367889888766      


Q ss_pred             cCCcccEEEEcc-chhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHH
Q 018352          102 KANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (357)
Q Consensus       102 ~~~~FDlV~~~~-~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~  155 (357)
                      ++++||+|+|.+ ++|| +.+   ..++|++++++|||||+|++++|+...+...
T Consensus        99 ~~~~fD~ii~~~~~~~~-~~d---~~~~l~~i~r~Lk~gG~~ii~~~~~~~~~~~  149 (246)
T d2avna1          99 PSGAFEAVLALGDVLSY-VEN---KDKAFSEIRRVLVPDGLLIATVDNFYTFLQQ  149 (246)
T ss_dssp             CTTCEEEEEECSSHHHH-CSC---HHHHHHHHHHHEEEEEEEEEEEEBHHHHHHH
T ss_pred             ccccccceeeecchhhh-hhh---HHHHHHHHHhhcCcCcEEEEEECCHHHHHHH
Confidence            568999999865 6787 544   4568999999999999999999987655443

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=6.5e-17  Score=151.03  Aligned_cols=184  Identities=14%  Similarity=0.106  Sum_probs=129.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ++++.+|||||||.|+.+..++.....+++|+++|+++++.|+++.+..+....+.+...|..   .      .+++||.
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~------~~~~fD~  129 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---E------FDEPVDR  129 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---G------CCCCCSE
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---c------cccccce
Confidence            468999999999999998888776566999999999999999999988777667888888752   2      4689999


Q ss_pred             EEEccchhhccCC-----HHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCcc
Q 018352          109 VCCFQHLQMCFET-----EERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES  183 (357)
Q Consensus       109 V~~~~~lh~~fes-----~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~  183 (357)
                      |+|..++.++-..     .+..+.++++|+++|||||++++.+.....-.....  .      +. ..    +..     
T Consensus       130 i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~--~------~~-~~----p~~-----  191 (291)
T d1kpia_         130 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQE--L------GL-TS----PMS-----  191 (291)
T ss_dssp             EEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHH--H------TC-CC----CHH-----
T ss_pred             EeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhh--c------cC-CC----chh-----
Confidence            9999977663211     245789999999999999999977433211000000  0      00 00    000     


Q ss_pred             EEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHHHHHH
Q 018352          184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGML  255 (357)
Q Consensus       184 y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~~~~~  255 (357)
                      +        .....|-.+|.|        ...++.+...+..++++.||+++...++...|......|...+
T Consensus       192 ~--------~~~~~fi~kyiF--------pgg~lps~~~~~~~~e~~gl~v~~~~~~~~hYa~TL~~W~~~f  247 (291)
T d1kpia_         192 L--------LRFIKFILTEIF--------PGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWADAL  247 (291)
T ss_dssp             H--------HHHHHHHHHHTC--------TTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHHHHHHHHH
T ss_pred             h--------cccchHHHHHhc--------CCCCCCCHHHHHhhhcccccccceeeeccccHHHHHHHHHHHH
Confidence            0        000013344544        1125778899999999999999999999999988765555433

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.75  E-value=2.3e-18  Score=154.43  Aligned_cols=110  Identities=11%  Similarity=0.179  Sum_probs=90.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||||||+|..+..+++.+ .+|+|+|+|++|++.|+++...     ++.++++|+....+       +++||+|+
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g-~~v~giD~s~~~i~~a~~~~~~-----~~~~~~~~~~~~~~-------~~~fD~I~   86 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQL-------PRRYDNIV   86 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCC-------SSCEEEEE
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcC-CeEEEEeCcHHHhhhhhccccc-----cccccccccccccc-------cccccccc
Confidence            35689999999998887775554 5899999999999999887542     58899998765443       57899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHH-hcccCCcEEEEEeCCchHHHHHHH
Q 018352          111 CFQHLQMCFETEERARRLLQNVS-SLLKPGGYFLGITPDSSTIWAKYQ  157 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~-~~LkpGG~fi~t~pd~~~i~~~~~  157 (357)
                      |..++|| ++   +...+|++++ ++|+|||++++++||...+...+.
T Consensus        87 ~~~vleh-~~---d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~  130 (225)
T d2p7ia1          87 LTHVLEH-ID---DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIA  130 (225)
T ss_dssp             EESCGGG-CS---SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHH
T ss_pred             ccceeEe-cC---CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHH
Confidence            9999999 43   4567799998 799999999999999987776654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.75  E-value=3e-18  Score=148.26  Aligned_cols=123  Identities=13%  Similarity=0.072  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCC-----------CceeEEE
Q 018352           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-----------NFIAEFF   86 (357)
Q Consensus        18 nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~-----------~~~v~f~   86 (357)
                      .+++..+-..-++++.+|||+|||+|.++..++..+. +|+|+|+|+.||+.|+++.+....           .....|+
T Consensus         7 ~~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (201)
T d1pjza_           7 KDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW   85 (201)
T ss_dssp             HHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence            3444444444467899999999999999998887776 999999999999999999864321           2245788


Q ss_pred             EcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352           87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus        87 ~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ++|.......     ....||+|++..++|+ + ..+....++++++++|||||++++....
T Consensus        86 ~~d~~~l~~~-----~~~~~D~i~~~~~l~~-l-~~~~~~~~~~~i~~~LkpgG~l~l~~~~  140 (201)
T d1pjza_          86 CGDFFALTAR-----DIGHCAAFYDRAAMIA-L-PADMRERYVQHLEALMPQACSGLLITLE  140 (201)
T ss_dssp             EECCSSSTHH-----HHHSEEEEEEESCGGG-S-CHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred             cccccccccc-----cccceeEEEEEeeeEe-c-chhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence            8888775442     2368999999999998 4 5677889999999999999998876433

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=3.5e-18  Score=150.69  Aligned_cols=107  Identities=17%  Similarity=0.189  Sum_probs=88.0

Q ss_pred             HHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      +..+. ++.+|||||||+|..+..+     .+++|+|+|+.|++.|+++        ++.++++|+.+.++      +++
T Consensus        31 ~~~~~-~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~------~~~   90 (208)
T d1vlma_          31 VKCLL-PEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKR--------GVFVLKGTAENLPL------KDE   90 (208)
T ss_dssp             HHHHC-CSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCS------CTT
T ss_pred             HHhhC-CCCeEEEECCCCccccccc-----ceEEEEeCChhhccccccc--------cccccccccccccc------ccc
Confidence            34443 4568999999999776655     3579999999999998864        47899999988766      568


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHH
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~  155 (357)
                      +||+|+|.+++|| +.   +..+++++++++|+|||++++++|+.+.++.+
T Consensus        91 ~fD~I~~~~~l~h-~~---d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~  137 (208)
T d1vlma_          91 SFDFALMVTTICF-VD---DPERALKEAYRILKKGGYLIVGIVDRESFLGR  137 (208)
T ss_dssp             CEEEEEEESCGGG-SS---CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHH
T ss_pred             ccccccccccccc-cc---ccccchhhhhhcCCCCceEEEEecCCcchhHH
Confidence            9999999999999 44   36678999999999999999999988665443

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.74  E-value=1.2e-17  Score=153.04  Aligned_cols=113  Identities=17%  Similarity=0.153  Sum_probs=94.1

Q ss_pred             HHHHHcCC-CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh
Q 018352           23 ALIKIYSH-PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (357)
Q Consensus        23 ~Li~~~~~-~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~  101 (357)
                      .+++.+.. +..+|||+|||+|+.+..++.....+|+|+|+|+.||+.|+++....   ..++|+++|+...++      
T Consensus        84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~------  154 (254)
T d1xtpa_          84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATL------  154 (254)
T ss_dssp             HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCC------
T ss_pred             HHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEcccccccc------
Confidence            34444433 56799999999999988887777779999999999999999987653   268999999877655      


Q ss_pred             cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      .+++||+|+|+.++|| + +.++..++|++++++|||||+|++..
T Consensus       155 ~~~~fD~I~~~~vl~h-l-~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         155 PPNTYDLIVIQWTAIY-L-TDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             CSSCEEEEEEESCGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCccceEEeeccccc-c-chhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            5689999999999999 5 55667899999999999999999864

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=4.3e-18  Score=154.39  Aligned_cols=109  Identities=20%  Similarity=0.231  Sum_probs=93.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      +.++.+|||||||+|..+..+++....+++|+|+|+.|++.|+++.+..+...+++|+++|+.+. +      .+++||+
T Consensus        31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~------~~~~fD~  103 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-V------ANEKCDV  103 (245)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-C------CSSCEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-c------ccCceeE
Confidence            46899999999999988888877655699999999999999999988776666799999999775 2      4688999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |+|..++|| +.   +...++++++++|||||++++..+.
T Consensus       104 v~~~~~~~~-~~---d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_         104 AACVGATWI-AG---GFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             EEEESCGGG-TS---SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             EEEEehhhc-cC---CHHHHHHHHHHHcCcCcEEEEEecc
Confidence            999999998 43   3567899999999999999998554

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=1.7e-16  Score=147.70  Aligned_cols=182  Identities=18%  Similarity=0.192  Sum_probs=129.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      +.++.+|||||||.|+.+..+++...++|+|+++|++.++.|+++....+...++.+..+|...         .+++||.
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~---------~~~~fD~  130 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ---------FDEPVDR  130 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG---------CCCCCSE
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc---------ccccccc
Confidence            4689999999999999998888776679999999999999999999887777789999998643         2478999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF  188 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f  188 (357)
                      |++..++.+ +.+ ...+.++++++++|||||++++.+.....-....        ..+.       +..   ..+    
T Consensus       131 i~si~~~eh-~~~-~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~--------~~~~-------~~~---~~~----  186 (285)
T d1kpga_         131 IVSIGAFEH-FGH-ERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIH--------ERGL-------PMS---FTF----  186 (285)
T ss_dssp             EEEESCGGG-TCT-TTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHT--------TTTC-------SCH---HHH----
T ss_pred             eeeehhhhh-cCc-hhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhc--------cccC-------Ccc---hhh----
Confidence            999997777 322 4456899999999999999987643221100000        0000       000   000    


Q ss_pred             ecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHHHHHH
Q 018352          189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGML  255 (357)
Q Consensus       189 ~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~~~~~  255 (357)
                          .....|-.+|.|-        .-.+.+.+.+.+++++.||+++...++...|.+....|...+
T Consensus       187 ----~~~~~fi~kyiFp--------gg~lPsl~~~~~~~e~agf~v~~~~~~~~hYarTl~~W~~~f  241 (285)
T d1kpga_         187 ----ARFLKFIVTEIFP--------GGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAAL  241 (285)
T ss_dssp             ----HHHHHHHHHHTST--------TCCCCCHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             ----hchhhHHHHHhcc--------CCCCCChhhHHHHHHHhchhhcccccchhhHHHHHHHHHHHH
Confidence                0001234455551        124668889999999999999999999999987665555443

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.6e-17  Score=149.03  Aligned_cols=132  Identities=16%  Similarity=0.117  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHcC---CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCc-----------
Q 018352           16 LYEFAKTALIKIYS---HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-----------   81 (357)
Q Consensus        16 ~~nwvks~Li~~~~---~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~-----------   81 (357)
                      +.+|....+-+.+.   ..+.+|||+|||+|......+.....+|+|+|+|+.|++.|+++++.....+           
T Consensus        36 ~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~  115 (263)
T d2g72a1          36 VGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACL  115 (263)
T ss_dssp             HHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhh
Confidence            44565555544443   2578999999999966555555567799999999999999998765432111           


Q ss_pred             ------------------eeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352           82 ------------------IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus        82 ------------------~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                                        ......+|+.............++||+|+|.+++|++..+.++..+++++++++|||||+|+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li  195 (263)
T d2g72a1         116 IEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL  195 (263)
T ss_dssp             HHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             hccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEE
Confidence                              12345667765443222222356899999999999988888889999999999999999999


Q ss_pred             EEeC
Q 018352          144 GITP  147 (357)
Q Consensus       144 ~t~p  147 (357)
                      +..+
T Consensus       196 ~~~~  199 (263)
T d2g72a1         196 LIGA  199 (263)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            8744

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.70  E-value=4.2e-17  Score=143.16  Aligned_cols=107  Identities=16%  Similarity=0.160  Sum_probs=90.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.||+.|+++.+..+.. ++++...|+....+       +++||+|+
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~-------~~~fD~I~  100 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF-------DGEYDFIL  100 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC-------CCCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc-------cccccEEE
Confidence            345999999999999988877665 8999999999999999988765443 58899999877554       57899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |..++|+ + +.+...+++++++++|+|||++++.+..
T Consensus       101 ~~~~~~~-~-~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1         101 STVVMMF-L-EAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             EESCGGG-S-CTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             Eeeeeec-C-CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            9999998 4 4456788999999999999999987443

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=4.1e-17  Score=150.42  Aligned_cols=110  Identities=21%  Similarity=0.334  Sum_probs=91.8

Q ss_pred             HHHHHHcCCCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh
Q 018352           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (357)
Q Consensus        22 s~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~  100 (357)
                      ..+......++.+|||+|||+|..+..+++.. ..+++|+|+|+.||+.|+++..      ++.|.++|+...++     
T Consensus        75 ~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~------~~~~~~~d~~~l~~-----  143 (268)
T d1p91a_          75 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP------QVTFCVASSHRLPF-----  143 (268)
T ss_dssp             HHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTSCSB-----
T ss_pred             HHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc------cccceeeehhhccC-----
Confidence            33444445578899999999999998887773 4689999999999999988753      57899999998887     


Q ss_pred             hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (357)
Q Consensus       101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~  154 (357)
                       .+++||+|++.+++|+           +++++|+|||||++++++|+.+.++.
T Consensus       144 -~~~sfD~v~~~~~~~~-----------~~e~~rvLkpgG~l~~~~p~~~~l~e  185 (268)
T d1p91a_         144 -SDTSMDAIIRIYAPCK-----------AEELARVVKPGGWVITATPGPRHLME  185 (268)
T ss_dssp             -CTTCEEEEEEESCCCC-----------HHHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             -CCCCEEEEeecCCHHH-----------HHHHHHHhCCCcEEEEEeeCCcchHH
Confidence             6789999999887766           46789999999999999999877654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=2e-16  Score=147.10  Aligned_cols=120  Identities=21%  Similarity=0.251  Sum_probs=89.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC---ceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN---FIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~---~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ++.+|||+|||+|..+..+++.+. +|+|+|+|+.||+.|+++....+..   ....+..+|...  +...++ ...+||
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~fd  131 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT--LDKDVP-AGDGFD  131 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG--HHHHSC-CTTCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc--cccccC-CCCCce
Confidence            457999999999999999888765 8999999999999999987654321   123344444422  111111 247899


Q ss_pred             EEEEcc-chhhccC---CHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352          108 LVCCFQ-HLQMCFE---TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (357)
Q Consensus       108 lV~~~~-~lh~~fe---s~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~  154 (357)
                      +|+|.+ +++|+..   +.++.+.+|++++++|||||+|++++.|.+.+.+
T Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~  182 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILS  182 (292)
T ss_dssp             EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred             EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCHHHHhh
Confidence            999865 6777432   2467889999999999999999999998876643

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.66  E-value=1.5e-16  Score=147.60  Aligned_cols=118  Identities=23%  Similarity=0.310  Sum_probs=94.8

Q ss_pred             HHHHHHHHHc--CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc
Q 018352           19 FAKTALIKIY--SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (357)
Q Consensus        19 wvks~Li~~~--~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~   94 (357)
                      ...+.+++..  ..++.+|||+|||+|..+..++..  ...+|+|+|+|+.+|+.|+++.+..+  .+++|.++|+...+
T Consensus        13 d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~--~~~~f~~~d~~~~~   90 (281)
T d2gh1a1          13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGDATEIE   90 (281)
T ss_dssp             HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS--SEEEEEESCTTTCC
T ss_pred             HHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc--cccccccccccccc
Confidence            3344555543  346789999999999777766554  24689999999999999999987653  37899999998765


Q ss_pred             hhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        95 ~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +       .++||+|+|..++|| +.+   ...++++++++|||||.+++..|+.
T Consensus        91 ~-------~~~fD~v~~~~~l~~-~~d---~~~~l~~~~~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1          91 L-------NDKYDIAICHAFLLH-MTT---PETMLQKMIHSVKKGGKIICFEPHW  134 (281)
T ss_dssp             C-------SSCEEEEEEESCGGG-CSS---HHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             c-------cCCceEEEEehhhhc-CCC---HHHHHHHHHHHcCcCcEEEEEECCc
Confidence            5       357999999999999 543   5578999999999999999998874

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.3e-16  Score=139.84  Aligned_cols=112  Identities=13%  Similarity=0.072  Sum_probs=91.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcC----------------CCceeEEEEcCCCC
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----------------KNFIAEFFEADPCA   92 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~----------------~~~~v~f~~~D~~~   92 (357)
                      .+++.+|||+|||+|.++..++..+. +|+|||+|+.+|+.|+++.....                ...+++|+++|+..
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            35788999999999999999888776 99999999999999999865321                12367889999866


Q ss_pred             CchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352           93 ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus        93 ~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ....     ..+.||+|....++|+ + +.+....+++++.++|||||++++++.+
T Consensus       122 l~~~-----~~~~fd~i~~~~~l~~-~-~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         122 LPRT-----NIGKFDMIWDRGALVA-I-NPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             GGGS-----CCCCEEEEEESSSTTT-S-CGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             cccc-----ccCceeEEEEEEEEEe-c-cchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            4321     3578999999999998 4 4567889999999999999998877544

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1e-15  Score=140.98  Aligned_cols=144  Identities=17%  Similarity=0.147  Sum_probs=98.1

Q ss_pred             chHHHHHHHHHHHHHHHcC-----CCCCEEEEECCCCChhHHHHHHh------c-CCeEEEEeCChHHHHHHHHHhHhcC
Q 018352           11 LTHHRLYEFAKTALIKIYS-----HPYVTVCDLYCGAGVDVDKWETA------L-IANYIGIDVATSGIGEARDTWENQR   78 (357)
Q Consensus        11 ~p~~~~~nwvks~Li~~~~-----~~~~~VLDlGCG~G~~l~k~~~~------~-~~~v~GiDiS~~~l~~A~~r~~~~~   78 (357)
                      +.+..+.+|+...+-..+.     ++..+|||||||+|..+..++..      + ..+++|+|+|+.|++.|+++.....
T Consensus        15 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~   94 (280)
T d1jqea_          15 TEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS   94 (280)
T ss_dssp             SHHHHHHHHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc
Confidence            3355567888776654432     24458999999999876655442      1 2368999999999999999986543


Q ss_pred             CCceeEEEEcCCCCCchhhh--hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352           79 KNFIAEFFEADPCAENFETQ--MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus        79 ~~~~v~f~~~D~~~~~~~~~--l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                      ....+.+...+.....+...  ....+++||+|+|.+++|| +.   +...+|++++++|+|||++++++++....+.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~-~~---d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l  170 (280)
T d1jqea_          95 NLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYY-VK---DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKL  170 (280)
T ss_dssp             SCTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGG-CS---CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHH
T ss_pred             ccccccccchhhhhhhhcchhcccCCCCceeEEEEccceec-CC---CHHHHHHHHHhhCCCCCEEEEEEecCcchHHHH
Confidence            22234443332221111111  1114689999999999999 53   356889999999999999999988776666555


Q ss_pred             HH
Q 018352          157 QK  158 (357)
Q Consensus       157 ~~  158 (357)
                      .+
T Consensus       171 ~~  172 (280)
T d1jqea_         171 WK  172 (280)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.60  E-value=4.6e-15  Score=129.83  Aligned_cols=119  Identities=16%  Similarity=0.176  Sum_probs=94.1

Q ss_pred             HHHHHHHHcC-CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhh
Q 018352           20 AKTALIKIYS-HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFET   97 (357)
Q Consensus        20 vks~Li~~~~-~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~   97 (357)
                      ....|++.+. .++.+|||+|||+|..+..++. ...+++|+|+|+.+++.|+++.+.++.. .++++..+|+.. .+  
T Consensus        40 ~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~--  115 (194)
T d1dusa_          40 GTKILVENVVVDKDDDILDLGCGYGVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NV--  115 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TC--
T ss_pred             HHHHHHHhCCcCCCCeEEEEeecCChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hh--
Confidence            3445665543 4689999999999987776654 4569999999999999999998766543 368999999876 34  


Q ss_pred             hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        98 ~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                          .+++||+|+|...+|.   ..+...++++++.++|||||++++.....
T Consensus       116 ----~~~~fD~Ii~~~p~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         116 ----KDRKYNKIITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             ----TTSCEEEEEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             ----ccCCceEEEEcccEEe---cchhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence                4579999999988776   45567889999999999999988765443

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.60  E-value=2.9e-15  Score=130.38  Aligned_cols=118  Identities=15%  Similarity=0.128  Sum_probs=93.3

Q ss_pred             HHHHHHHc-CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh
Q 018352           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (357)
Q Consensus        21 ks~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l   99 (357)
                      +..++... ..++.+|||+|||+|..+..++. ...+|+|+|+++.|++.|+++.+..+...+++++++|+.....    
T Consensus        22 r~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~-~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~----   96 (186)
T d1l3ia_          22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAG-RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC----   96 (186)
T ss_dssp             HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHT-TSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT----
T ss_pred             HHHHHHhcCCCCCCEEEEEECCeEcccccccc-cceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc----
Confidence            34444443 35789999999999988877654 4569999999999999999999888776689999999754322    


Q ss_pred             hhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                        ....||+|+|....++       ...+++.+.+.|||||++++..+..+..
T Consensus        97 --~~~~~D~v~~~~~~~~-------~~~~~~~~~~~LkpgG~lvi~~~~~e~~  140 (186)
T d1l3ia_          97 --KIPDIDIAVVGGSGGE-------LQEILRIIKDKLKPGGRIIVTAILLETK  140 (186)
T ss_dssp             --TSCCEEEEEESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECBHHHH
T ss_pred             --ccCCcCEEEEeCcccc-------chHHHHHHHHHhCcCCEEEEEeeccccH
Confidence              3578999999886655       3568999999999999999887665443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=2.6e-15  Score=137.43  Aligned_cols=116  Identities=19%  Similarity=0.152  Sum_probs=88.9

Q ss_pred             HHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      +.++..++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|++.|+++.+.++.  +..|.++|+.. .+      ..+
T Consensus       114 l~~~~~~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~-~~------~~~  183 (254)
T d2nxca1         114 LARHLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEA-AL------PFG  183 (254)
T ss_dssp             HHHHCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHH-HG------GGC
T ss_pred             HHhhcCccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHcCC--ceeEEeccccc-cc------ccc
Confidence            34566789999999999998877766655 5899999999999999999887754  56788888643 12      357


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe---CCchHHHHHHH
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT---PDSSTIWAKYQ  157 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~---pd~~~i~~~~~  157 (357)
                      +||+|+++...+.       ...++..+.++|||||+++++.   .+.+.+.+.++
T Consensus       184 ~fD~V~ani~~~~-------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~  232 (254)
T d2nxca1         184 PFDLLVANLYAEL-------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMA  232 (254)
T ss_dssp             CEEEEEEECCHHH-------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred             ccchhhhcccccc-------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHH
Confidence            8999998764443       5678899999999999999762   33345555443

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.57  E-value=8.2e-15  Score=133.45  Aligned_cols=105  Identities=18%  Similarity=0.169  Sum_probs=89.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ...+|||||||+|..+..+++. +..+++++|+ +++++.|+++....+...+++++.+|.... .       ..+||+|
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~-------~~~~D~v  150 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-L-------PRKADAI  150 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-------SSCEEEE
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-c-------ccchhhe
Confidence            4579999999999988888876 4568999998 678999999988776667899999998652 2       3579999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ++..++|+ + +.++..++|++++++|||||++++..
T Consensus       151 ~~~~vlh~-~-~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         151 ILSFVLLN-W-PDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             EEESCGGG-S-CHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eecccccc-C-CchhhHHHHHHHHHhcCCCcEEEEEe
Confidence            99999998 6 56678899999999999999999874

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.7e-15  Score=133.18  Aligned_cols=117  Identities=17%  Similarity=0.006  Sum_probs=86.5

Q ss_pred             HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      .+......++.+|||||||+|..+..+++....+++|||+|+.+++.|+++.+...  .++.++..|+.....  .+  +
T Consensus        45 ~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~--~~--~  118 (229)
T d1zx0a1          45 ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAP--TL--P  118 (229)
T ss_dssp             HHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGG--GS--C
T ss_pred             HHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccc--cc--c
Confidence            45555567889999999999988888877666789999999999999999987653  366777776533111  11  4


Q ss_pred             CCcccEEEEccc-hhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          103 ANQADLVCCFQH-LQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       103 ~~~FDlV~~~~~-lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +++||.|+.-.. ..+...+..+...++++++++|||||+|++.
T Consensus       119 ~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         119 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            578999874221 1122334567888999999999999999874

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.52  E-value=1.9e-14  Score=127.80  Aligned_cols=107  Identities=11%  Similarity=-0.011  Sum_probs=81.6

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      .++|+.+|||+|||+|..+..+++. +.++|+|+|+|+.|++.|+++.+...   ++.++.+|+........   ....+
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~---~~~~v  126 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYSG---IVEKV  126 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTTT---TCCCE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCcccccc---ccceE
Confidence            3568999999999999988888765 55699999999999999999987642   78999999877544210   12344


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|.+..  +    ...+...+++++.+.|||||++++..
T Consensus       127 d~v~~~~--~----~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         127 DLIYQDI--A----QKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEECC--C----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecc--c----ChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            5544322  2    23467789999999999999998774

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.49  E-value=6.6e-14  Score=126.09  Aligned_cols=106  Identities=15%  Similarity=0.065  Sum_probs=83.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      +.++.+|||||||+|..+..+++. +.+.|+|+|+|+.|++.|+++.....   ++.++.+|.......     .+..+|
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~-----~~~~~~  143 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE---NIIPILGDANKPQEY-----ANIVEK  143 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT---TEEEEECCTTCGGGG-----TTTCCC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc---ccceEEEeeccCccc-----ccccce
Confidence            358999999999999988888876 45799999999999999999876542   577788887664431     345677


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ++++...+|+    .++.+.+++++.+.|||||++++..
T Consensus       144 v~~i~~~~~~----~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         144 VDVIYEDVAQ----PNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             EEEEEECCCS----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEeeccccc----hHHHHHHHHHHHHhcccCceEEEEe
Confidence            7666554554    3568889999999999999998774

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.49  E-value=6.8e-14  Score=123.80  Aligned_cols=113  Identities=14%  Similarity=0.120  Sum_probs=89.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..+..|||||||+|..+..+++. +...++|+|+++.+|..|.++.+..+.. ++.|+.+|+..  +.+.+  +++++|.
T Consensus        28 ~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~--l~~~~--~~~~~d~  102 (204)
T d2fcaa1          28 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADT--LTDVF--EPGEVKR  102 (204)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGG--HHHHC--CTTSCCE
T ss_pred             CCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccchhh--hhccc--Cchhhhc
Confidence            34568999999999999888776 5679999999999999999998876653 79999999864  32222  4689999


Q ss_pred             EEEccchhhccCCHHH-----HHHHHHHHHhcccCCcEEEEEeCC
Q 018352          109 VCCFQHLQMCFETEER-----ARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       109 V~~~~~lh~~fes~~~-----~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      |.+.+...| +.....     ...+++.++++|||||.|++.|-+
T Consensus       103 v~i~fp~P~-~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~  146 (204)
T d2fcaa1         103 VYLNFSDPW-PKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN  146 (204)
T ss_dssp             EEEESCCCC-CSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred             ccccccccc-chhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence            999987776 321111     147999999999999999988744

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.48  E-value=1.7e-13  Score=125.06  Aligned_cols=105  Identities=19%  Similarity=0.150  Sum_probs=89.3

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ...+|||||||+|..+..++++ +..+++++|+ +++++.|+++.+..+...++.++.+|... +.       +.+||+|
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~-------p~~~D~v  151 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL-------PVTADVV  151 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-------SCCEEEE
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-cc-------cccchhh
Confidence            5579999999999999888877 4568999998 78899999998877666689999999865 22       3569999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      ++.+++|+ + +.++..++|++++++|||||+++++.
T Consensus       152 ~~~~vLh~-~-~d~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         152 LLSFVLLN-W-SDEDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             EEESCGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccccccc-c-CcHHHHHHHHHHHhhcCCcceeEEEE
Confidence            99999998 6 56778899999999999999999874

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=7.7e-14  Score=131.72  Aligned_cols=106  Identities=16%  Similarity=0.109  Sum_probs=89.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..+++++..+|+|+|.|+ +++.|+++.+.++...++.++++|+....+      ++.+||+|
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~------~~~~~D~i  109 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL------PFPKVDII  109 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SSSCEEEE
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC------cccceeEE
Confidence            47899999999999877777777888999999996 778888888877777789999999988766      56899999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                      ++....++ +..+.....++..+.++|||||+++
T Consensus       110 ~se~~~~~-~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         110 ISEWMGYF-LLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EECCCBTT-BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEeccee-eccchhHHHHHHHHHhccCCCeEEE
Confidence            99777666 4456667788999999999999985

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=2.7e-13  Score=124.37  Aligned_cols=115  Identities=15%  Similarity=0.071  Sum_probs=93.4

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhc--CCCceeEEEEcCCCCCchhhhhhhcC
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ--RKNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~--~~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      -+.|+.+|||+|||+|..+..++..  +.++|+++|+++++++.|+++++..  ....++.|.++|+....+      ++
T Consensus        93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~------~~  166 (264)
T d1i9ga_          93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL------PD  166 (264)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC------CT
T ss_pred             CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc------cC
Confidence            3569999999999999888888776  5679999999999999999987653  234578999999877666      56


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~  157 (357)
                      ++||.|++..         .++..++.++.++|||||++++..|+.+.+.+-..
T Consensus       167 ~~fDaV~ldl---------p~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~  211 (264)
T d1i9ga_         167 GSVDRAVLDM---------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVE  211 (264)
T ss_dssp             TCEEEEEEES---------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHH
T ss_pred             CCcceEEEec---------CCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHH
Confidence            8999997632         12446799999999999999999999877655443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.45  E-value=3.4e-13  Score=122.79  Aligned_cols=110  Identities=14%  Similarity=0.025  Sum_probs=89.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +.|+.+|||+|||+|..+..+++.  +.++|+++|+++++++.|+++++......++++..+|+... +      .+..|
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~------~~~~f  155 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-I------SDQMY  155 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-C------CSCCE
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-c------cccee
Confidence            468999999999999888777765  56799999999999999999988755455899999998763 2      35789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~  154 (357)
                      |+|++...-         ...++.++.++|||||++++..|+.+.+.+
T Consensus       156 D~V~ld~p~---------p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~  194 (250)
T d1yb2a1         156 DAVIADIPD---------PWNHVQKIASMMKPGSVATFYLPNFDQSEK  194 (250)
T ss_dssp             EEEEECCSC---------GGGSHHHHHHTEEEEEEEEEEESSHHHHHH
T ss_pred             eeeeecCCc---------hHHHHHHHHHhcCCCceEEEEeCCcChHHH
Confidence            999864322         335799999999999999999999765543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=1.1e-13  Score=129.94  Aligned_cols=105  Identities=14%  Similarity=0.128  Sum_probs=86.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||||||+|..+..+++++..+|+|+|.|+.+ ..|++..+.++...++.++++|+....+      +.++||+|+
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~------~~~~~D~iv  105 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVEL------PVEKVDIII  105 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCC------SSSCEEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHccc------ccceeEEEe
Confidence            688999999999977777777777899999999764 6666666666666689999999988766      568999999


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                      +....++ +..+.....++..+.++|||||.++
T Consensus       106 s~~~~~~-l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         106 SEWMGYC-LFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             ECCCBBT-BTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeee-eccHHHHHHHHHHHHhcCCCCeEEE
Confidence            9777666 4356668889999999999999986

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.2e-13  Score=124.87  Aligned_cols=106  Identities=15%  Similarity=0.096  Sum_probs=86.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||||||+|..+..+++++..+|+|+|.|+.++. |++....++...++.++++|+....+      +..+||+|
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~------~~~~~D~I  106 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHL------PVEKVDVI  106 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCC------SCSCEEEE
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcC------ccccceEE
Confidence            468899999999998877777778889999999998864 55555555556689999999988666      56899999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                      +|....|+.+ .+.....++....++|||||+++
T Consensus       107 vse~~~~~~~-~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         107 ISEWMGYFLL-FESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             EECCCBTTBT-TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEeeeeeecc-cccccHHHHHHHHhcCCCCcEEe
Confidence            9977666633 55667788888899999999987

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=3.6e-13  Score=119.73  Aligned_cols=101  Identities=12%  Similarity=0.003  Sum_probs=80.8

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ++++.+|||||||+|..+..+++.  ...+|+++|+++++++.|+++.+.... .++.++++|+.....      ..++|
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~~~------~~~~f  145 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVP------EFSPY  145 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCG------GGCCE
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHccc------cccch
Confidence            568999999999999877777664  456899999999999999999876543 367888998765443      35789


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|+|..+++++.          .++.+.|||||++++..
T Consensus       146 D~I~~~~~~~~~p----------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         146 DVIFVTVGVDEVP----------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             EEEEECSBBSCCC----------HHHHHHEEEEEEEEEEB
T ss_pred             hhhhhhccHHHhH----------HHHHHhcCCCcEEEEEE
Confidence            9999999887721          24567899999998754

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.41  E-value=1.1e-12  Score=115.80  Aligned_cols=115  Identities=16%  Similarity=0.090  Sum_probs=89.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .....|||||||+|..+..+++. +...++|+|+++.++..|.++....+.. ++.++.+|+...  ...+  ++.++|.
T Consensus        30 ~~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l--~~~~--~~~~~~~  104 (204)
T d1yzha1          30 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDL--TDYF--EDGEIDR  104 (204)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCG--GGTS--CTTCCSE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHH--hhhc--cCCceeh
Confidence            34568999999999999888876 5678999999999999999998876543 799999998763  2222  4688999


Q ss_pred             EEEccchhhccCCHHH-----HHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          109 VCCFQHLQMCFETEER-----ARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       109 V~~~~~lh~~fes~~~-----~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      |.+.|.-.| ......     ...+|+.++++|||||.|++.|-+.+
T Consensus       105 i~i~fPdPw-~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~  150 (204)
T d1yzha1         105 LYLNFSDPW-PKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG  150 (204)
T ss_dssp             EEEESCCCC-CSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred             hcccccccc-cchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCcc
Confidence            999886555 211100     15789999999999999998875543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.8e-12  Score=122.44  Aligned_cols=108  Identities=15%  Similarity=0.067  Sum_probs=83.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc-------C-CCceeEEEEcCCCCCchhhhh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-------R-KNFIAEFFEADPCAENFETQM   99 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~-------~-~~~~v~f~~~D~~~~~~~~~l   99 (357)
                      +.++.+|||||||+|..+..++.. +..+++|+|+|+.+++.|++..+..       + ...+++|+++|+.+.++.+.+
T Consensus       149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~  228 (328)
T d1nw3a_         149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI  228 (328)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccccc
Confidence            468899999999999888877665 5668999999999999998865431       1 133789999999886663321


Q ss_pred             hhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                          ...|+|++...+|.     .+....|+++.+.|||||+++.+
T Consensus       229 ----~~advi~~~~~~f~-----~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         229 ----ANTSVIFVNNFAFG-----PEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             ----HHCSEEEECCTTTC-----HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             ----CcceEEEEcceecc-----hHHHHHHHHHHHhCCCCcEEEEe
Confidence                23578877653322     45778899999999999999876

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.38  E-value=1.1e-12  Score=123.82  Aligned_cols=125  Identities=16%  Similarity=0.089  Sum_probs=96.5

Q ss_pred             HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      ..+..++.++.+|||+|||+|+.+...+..+..+|+++|+|+.+++.|+++++.++...+++|+++|+..  ....+...
T Consensus       137 ~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~--~~~~~~~~  214 (324)
T d2as0a2         137 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE--EMEKLQKK  214 (324)
T ss_dssp             HHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH--HHHHHHHT
T ss_pred             HHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhh--hhHHHHhc
Confidence            3445677889999999999999998888888789999999999999999999888776688999999854  22223334


Q ss_pred             CCcccEEEEccchhh-----ccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          103 ANQADLVCCFQHLQM-----CFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~-----~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ..+||+|++......     .+........++..+.++|+|||+++.+++..
T Consensus       215 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         215 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             cCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            678999998542111     01112345678999999999999999887665

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.37  E-value=1.9e-12  Score=116.06  Aligned_cols=106  Identities=18%  Similarity=0.144  Sum_probs=82.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +.|+.+|||+|||+|..+..+++.  +.++|+|+|+|+.|++.++++.+...   ++..+..|+......   ......+
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~---~~~~~~v  144 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEEY---RALVPKV  144 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGG---TTTCCCE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCcccc---cccccce
Confidence            458999999999999999998876  56799999999999999999876542   567788887654321   1134678


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |+|++...      ..++...+++++.+.|||||++++.+
T Consensus       145 D~i~~d~~------~~~~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         145 DVIFEDVA------QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEECCC------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEEcc------ccchHHHHHHHHHHhcccCCeEEEEE
Confidence            98876542      23467789999999999999998763

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.4e-12  Score=115.24  Aligned_cols=104  Identities=15%  Similarity=0.127  Sum_probs=81.2

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCC----CceeEEEEcCCCCCchhhhhhhc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQMQEK  102 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~----~~~v~f~~~D~~~~~~~~~l~~~  102 (357)
                      ++++.+|||+|||+|..+..+++.  +..+|+|+|+++++++.|+++++....    ..++.+..+|+.....      .
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~------~  147 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA------E  147 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG------G
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc------h
Confidence            468999999999999777666554  456999999999999999998865332    2367889999866444      3


Q ss_pred             CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ..+||+|++..+++...          .++.+.|||||++++....
T Consensus       148 ~~~fD~I~~~~~~~~ip----------~~l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         148 EAPYDAIHVGAAAPVVP----------QALIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             GCCEEEEEECSBBSSCC----------HHHHHTEEEEEEEEEEESC
T ss_pred             hhhhhhhhhhcchhhcC----------HHHHhhcCCCcEEEEEEcc
Confidence            57899999999877632          3467899999999986543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=5.9e-12  Score=115.47  Aligned_cols=110  Identities=13%  Similarity=0.054  Sum_probs=88.2

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      +.++.+|||+|||+|..+..++..  +.++|+++|+++++++.|+++++..+...++.+...|+... +      ....|
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~-~------~~~~~  173 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-F------DEKDV  173 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-C------SCCSE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc-c------cccce
Confidence            468999999999999888888765  45799999999999999999998776556788888886432 2      34779


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~  154 (357)
                      |.|+...         .+..+++.++.++|||||++++..|+.+.+.+
T Consensus       174 D~V~~d~---------p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~  212 (266)
T d1o54a_         174 DALFLDV---------PDPWNYIDKCWEALKGGGRFATVCPTTNQVQE  212 (266)
T ss_dssp             EEEEECC---------SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHH
T ss_pred             eeeEecC---------CCHHHHHHHHHhhcCCCCEEEEEeCcccHHHH
Confidence            9886422         23456799999999999999999999766543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.4e-11  Score=115.90  Aligned_cols=116  Identities=16%  Similarity=0.063  Sum_probs=87.4

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhc----------CCCceeEEEEcCCCCCch
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ----------RKNFIAEFFEADPCAENF   95 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~----------~~~~~v~f~~~D~~~~~~   95 (357)
                      -+.|+.+|||+|||+|..+..++..  +.++|+++|+++++++.|+++++..          ....++.|.+.|+.....
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~  174 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  174 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence            3579999999999999888888775  5679999999999999999987642          223478999999876433


Q ss_pred             hhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus        96 ~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                      .  +  ....||.|++-..         ++..++.++.++|||||++++..|+-+.+.+-.
T Consensus       175 ~--~--~~~~fD~V~LD~p---------~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~  222 (324)
T d2b25a1         175 D--I--KSLTFDAVALDML---------NPHVTLPVFYPHLKHGGVCAVYVVNITQVIELL  222 (324)
T ss_dssp             ----------EEEEEECSS---------STTTTHHHHGGGEEEEEEEEEEESSHHHHHHHH
T ss_pred             c--c--CCCCcceEeecCc---------CHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHH
Confidence            1  1  3578999975321         123479999999999999999999987765543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=2.4e-11  Score=117.37  Aligned_cols=119  Identities=17%  Similarity=0.143  Sum_probs=81.8

Q ss_pred             HHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcC--------CCceeEE-EEc
Q 018352           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--------KNFIAEF-FEA   88 (357)
Q Consensus        19 wvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~--------~~~~v~f-~~~   88 (357)
                      .+..++-..-+.++.+|||||||.|..+..++.. +.++++|||+|+.|++.|+++.+...        ......+ ..+
T Consensus       204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~  283 (406)
T d1u2za_         204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  283 (406)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence            3444443334678999999999999888887765 66799999999999999999876421        0112233 344


Q ss_pred             CCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        89 D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +....+..+.   .-..+|+|++...+   |  ..+....|+++.+.|||||+++.+
T Consensus       284 ~f~~~~~~d~---~~~~adVV~inn~~---f--~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         284 SFVDNNRVAE---LIPQCDVILVNNFL---F--DEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             CSTTCHHHHH---HGGGCSEEEECCTT---C--CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             chhhcccccc---ccccceEEEEeccc---C--chHHHHHHHHHHHhcCCCcEEEEe
Confidence            4443332111   12458898875422   2  356788999999999999999865

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=3.8e-11  Score=110.34  Aligned_cols=114  Identities=13%  Similarity=0.128  Sum_probs=86.8

Q ss_pred             HHcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           26 KIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      ......+.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|++..+..+.. +++|+++|... .+      .+.
T Consensus       103 ~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~~d~~~-~~------~~~  174 (274)
T d2b3ta1         103 ARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFS-AL------AGQ  174 (274)
T ss_dssp             HHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTG-GG------TTC
T ss_pred             hhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-cceeeeccccc-cc------CCC
Confidence            344456789999999999887777664 5679999999999999999998877552 69999999865 23      357


Q ss_pred             cccEEEEccchhh-----------ccCC----------HHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          105 QADLVCCFQHLQM-----------CFET----------EERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       105 ~FDlV~~~~~lh~-----------~fes----------~~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +||+|+|+-..--           -++.          ....+++++++.++|+|||.+++-+.
T Consensus       175 ~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig  238 (274)
T d2b3ta1         175 QFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG  238 (274)
T ss_dssp             CEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             ceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            8999999743110           0111          13467899999999999999998753

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.23  E-value=2.1e-11  Score=102.33  Aligned_cols=108  Identities=12%  Similarity=0.047  Sum_probs=83.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      .+.+|||+|||+|......+..+..+|+++|+++.+++.+++..+..+...+++++++|+...     +....++||+|+
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~-----l~~~~~~fDiIf   88 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA-----IDCLTGRFDLVF   88 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH-----HHHBCSCEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccc-----ccccccccceeE
Confidence            588999999999988887777888899999999999999999998776666799999997541     122468899998


Q ss_pred             EccchhhccCCHHHHHHHHHHHH--hcccCCcEEEEEeCC
Q 018352          111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~--~~LkpGG~fi~t~pd  148 (357)
                      +.-...     .......+..+.  +.|+|||.+++..+.
T Consensus        89 ~DPPy~-----~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          89 LDPPYA-----KETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             ECCSSH-----HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             echhhc-----cchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            864221     233445555554  579999999987544

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.22  E-value=1.3e-11  Score=115.83  Aligned_cols=115  Identities=13%  Similarity=0.093  Sum_probs=87.1

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      ++.+|||+|||+|+.+..++. +..+|+++|+|+.+|+.|+++++.++.. +++|+++|+..  +...+....++||+|+
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~--~~~~~~~~~~~fD~Vi  220 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFD--LLRRLEKEGERFDLVV  220 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHH--HHHHHHHTTCCEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHH--HhhhhHhhhcCCCEEE
Confidence            578999999999999887654 5569999999999999999999887653 68999999754  2222333457899999


Q ss_pred             Eccch-h----hccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          111 CFQHL-Q----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       111 ~~~~l-h----~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +.... .    ..+........++..+.++|+|||.++.++.+.
T Consensus       221 ~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         221 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            85421 1    001123445678999999999999999887664

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.21  E-value=3.6e-11  Score=112.81  Aligned_cols=119  Identities=12%  Similarity=0.076  Sum_probs=90.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ..++.+|||++||+|+.+...+..+..+|+++|+|+.+++.|++.++.++.. .+++|+++|+..  ....+.....+||
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~--~l~~~~~~~~~fD  219 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD--YFKYARRHHLTYD  219 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH--HHHHHHHTTCCEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHH--HHHHHHhhcCCCC
Confidence            4568899999999999988777778889999999999999999999877653 468999999854  2222222457899


Q ss_pred             EEEEccc---h--hhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          108 LVCCFQH---L--QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       108 lV~~~~~---l--h~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +|++.--   -  ...+.-..+...+++.+.++|+|||+++.++.+.
T Consensus       220 ~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         220 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  266 (317)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            9998421   1  1112234556789999999999999999887654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.20  E-value=2.9e-11  Score=108.04  Aligned_cols=98  Identities=13%  Similarity=0.067  Sum_probs=76.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      +.++.+|||||||+|..+..++.. ..+|+++|+++++++.|+++....   .++.++.+|......      ..++||+
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~------~~~pfD~  137 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYE------EEKPYDR  137 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCG------GGCCEEE
T ss_pred             hcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcc---cccccccCchhhcch------hhhhHHH
Confidence            568999999999999777655554 569999999999999999887643   379999999755322      3478999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |++..+.+..          ...+.+.|||||++++-.
T Consensus       138 Iiv~~a~~~i----------p~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         138 VVVWATAPTL----------LCKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             EEESSBBSSC----------CHHHHHTEEEEEEEEEEE
T ss_pred             HHhhcchhhh----------hHHHHHhcCCCCEEEEEE
Confidence            9998877652          233557899999998763

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.20  E-value=8.7e-11  Score=102.38  Aligned_cols=119  Identities=16%  Similarity=0.171  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHcCCCCCEEEEECCCCChhHHHHH----Hh-----cCCeEEEEeCChHHHHHHHHHh-Hh-----------
Q 018352           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWE----TA-----LIANYIGIDVATSGIGEARDTW-EN-----------   76 (357)
Q Consensus        18 nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~----~~-----~~~~v~GiDiS~~~l~~A~~r~-~~-----------   76 (357)
                      ++++..++..  .+..+|+++|||+|.....++    ..     ..-+++|+|||+.+|+.|++-. ..           
T Consensus        13 ~~L~~~~~~~--~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~   90 (193)
T d1af7a2          13 PILAEHARRR--HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQL   90 (193)
T ss_dssp             HHHHHHHHHS--CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHH
T ss_pred             HHHHHHHhcc--CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHH
Confidence            4455554432  455799999999997554332    21     1126999999999999998521 00           


Q ss_pred             ------cCC------------CceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccC
Q 018352           77 ------QRK------------NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP  138 (357)
Q Consensus        77 ------~~~------------~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~Lkp  138 (357)
                            ...            ...+.|...+......     ...+.||+|+|.++|+| | +.+..+++++++++.|+|
T Consensus        91 ~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~fDvI~CRNVLiY-f-~~~~~~~vl~~l~~~L~p  163 (193)
T d1af7a2          91 QRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQY-----NVPGPFDAIFCRNVMIY-F-DKTTQEDILRRFVPLLKP  163 (193)
T ss_dssp             HHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSC-----CCCCCEEEEEECSSGGG-S-CHHHHHHHHHHHGGGEEE
T ss_pred             hhceeecCCCccceeehHHHHHHHHHHhhhhcccccc-----CCCCCccEEEeehhHHh-c-CHHHHHHHHHHHHHHhCC
Confidence                  000            0123444444433221     12478999999999999 8 677788999999999999


Q ss_pred             CcEEEEE
Q 018352          139 GGYFLGI  145 (357)
Q Consensus       139 GG~fi~t  145 (357)
                      ||++++-
T Consensus       164 GG~L~lG  170 (193)
T d1af7a2         164 DGLLFAG  170 (193)
T ss_dssp             EEEEEEC
T ss_pred             CcEEEEe
Confidence            9997754

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.16  E-value=1e-10  Score=109.08  Aligned_cols=127  Identities=17%  Similarity=0.132  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCc-eeEEEEcCCCCCchh
Q 018352           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFE   96 (357)
Q Consensus        18 nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~-~v~f~~~D~~~~~~~   96 (357)
                      .|++..+- . ..++.+|||++||+|+.....+..+. +|++||+|+.+|+.|++..+.++... +++|+++|+..  +.
T Consensus       121 ~~~~~~~~-~-~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~--~l  195 (309)
T d2igta1         121 EWLKNAVE-T-ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMK--FI  195 (309)
T ss_dssp             HHHHHHHH-H-SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHH--HH
T ss_pred             HHHHHHHh-h-ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHH--hH
Confidence            56555443 2 34578999999999998887776665 89999999999999999988765433 68999999854  22


Q ss_pred             hhhhhcCCcccEEEEc---cchhh---ccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           97 TQMQEKANQADLVCCF---QHLQM---CFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        97 ~~l~~~~~~FDlV~~~---~~lh~---~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .........||+|++.   |+..-   .+.-......++..+.++|+|||.+++++.++
T Consensus       196 ~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s  254 (309)
T d2igta1         196 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  254 (309)
T ss_dssp             HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             HHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence            2222235789999984   32111   12124556678888999999999766654443

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.15  E-value=3.9e-11  Score=109.50  Aligned_cols=106  Identities=14%  Similarity=0.029  Sum_probs=85.8

Q ss_pred             HHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      +.....++.+|||+|||+|..+..++..+.++|+++|+++.+++.++++.+.++...+++++++|+....       ..+
T Consensus       101 i~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-------~~~  173 (260)
T d2frna1         101 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------GEN  173 (260)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-------CCS
T ss_pred             HHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-------cCC
Confidence            4445678999999999999999888887777999999999999999999988877767999999997643       247


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .||.|++... ++       ...++..+.+.|++||++...
T Consensus       174 ~~D~Ii~~~p-~~-------~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         174 IADRILMGYV-VR-------THEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             CEEEEEECCC-SS-------GGGGHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEECCC-Cc-------hHHHHHHHHhhcCCCCEEEEE
Confidence            8999987642 22       234577788899999988654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=1.1e-10  Score=99.94  Aligned_cols=120  Identities=11%  Similarity=0.151  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc
Q 018352           15 RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (357)
Q Consensus        15 ~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~   94 (357)
                      .+.||+.     .....+.+|||+|||+|......+..+. +++++|+|+.+++.|++.++..+...++....+|.    
T Consensus        30 ~lf~~l~-----~~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~----   99 (171)
T d1ws6a1          30 ALFDYLR-----LRYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEV----   99 (171)
T ss_dssp             HHHHHHH-----HHCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHH----
T ss_pred             HHHHHhh-----ccccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhc----
Confidence            4567744     3456788999999999988877666665 89999999999999999988775543443333332    


Q ss_pred             hhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus        95 ~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      +.........+||+|++.--++.  ...+....++.  ..+|+|||++++..+.
T Consensus       100 ~~~~~~~~~~~fD~If~DPPY~~--~~~~~l~~l~~--~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         100 FLPEAKAQGERFTVAFMAPPYAM--DLAALFGELLA--SGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             HHHHHHHTTCCEEEEEECCCTTS--CTTHHHHHHHH--HTCEEEEEEEEEEEET
T ss_pred             ccccccccCCccceeEEcccccc--CHHHHHHHHHH--cCCcCCCeEEEEEecC
Confidence            11111224578999998754443  22333444443  3689999999887543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.05  E-value=3.7e-10  Score=100.10  Aligned_cols=101  Identities=12%  Similarity=0.065  Sum_probs=79.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      +.++.+|||||||+|..+.-++..-..+|+++|+++++++.|+++++..+. .++.++++|......      ..++||.
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~------~~~pfD~  148 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFP------PKAPYDV  148 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCG------GGCCEEE
T ss_pred             cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCc------ccCccee
Confidence            568999999999999777666554335799999999999999999987643 389999999866433      3588999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      |++..+++. .     +    ..+.+.|+|||++++-.
T Consensus       149 Iiv~~a~~~-i-----p----~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         149 IIVTAGAPK-I-----P----EPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             EEECSBBSS-C-----C----HHHHHTEEEEEEEEEEE
T ss_pred             EEeeccccc-C-----C----HHHHHhcCCCCEEEEEE
Confidence            999987765 2     1    22456899999999764

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=1.6e-09  Score=94.30  Aligned_cols=123  Identities=18%  Similarity=0.172  Sum_probs=90.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FD  107 (357)
                      .++..|||++||+|+.+..++.. +..+|+|+|.++.|++.|+++.+...  .++.+++++......  .+.. ..++||
T Consensus        22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~--~~~~~~~~~vd   97 (192)
T d1m6ya2          22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADF--LLKTLGIEKVD   97 (192)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHH--HHHHTTCSCEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHH--HHHHcCCCCcc
Confidence            47889999999999999988886 56799999999999999999987642  368889988654322  1111 247899


Q ss_pred             EEEEccchhh-----ccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc--hHHHHHH
Q 018352          108 LVCCFQHLQM-----CFETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKY  156 (357)
Q Consensus       108 lV~~~~~lh~-----~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~--~~i~~~~  156 (357)
                      .|+.-.++-.     .-.........|..+.++|+|||.+++.+..+  +.+++++
T Consensus        98 gIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~  153 (192)
T d1m6ya2          98 GILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKET  153 (192)
T ss_dssp             EEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHH
T ss_pred             eeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHH
Confidence            9986554311     00113446788999999999999999887666  3344444

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=2.8e-10  Score=101.42  Aligned_cols=102  Identities=11%  Similarity=0.042  Sum_probs=76.3

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh----c---CCeEEEEeCChHHHHHHHHHhHhcC----CCceeEEEEcCCCCCchhh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA----L---IANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFET   97 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~----~---~~~v~GiDiS~~~l~~A~~r~~~~~----~~~~v~f~~~D~~~~~~~~   97 (357)
                      +.++.+|||||||+|..+..++..    +   ..+|+++|+++++++.|+++.....    ...++.+.++|......  
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~--  155 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP--  155 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG--
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc--
Confidence            568999999999999766555442    1   2489999999999999988764321    11268999999866433  


Q ss_pred             hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus        98 ~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                          ..++||+|++..+++. . .        ..+.+.|||||++++..
T Consensus       156 ----~~~~fD~Iiv~~a~~~-~-p--------~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         156 ----PNAPYNAIHVGAAAPD-T-P--------TELINQLASGGRLIVPV  190 (223)
T ss_dssp             ----GGCSEEEEEECSCBSS-C-C--------HHHHHTEEEEEEEEEEE
T ss_pred             ----cccceeeEEEEeechh-c-h--------HHHHHhcCCCcEEEEEE
Confidence                3578999999997765 2 1        23567999999998864

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.04  E-value=6.8e-10  Score=95.77  Aligned_cols=123  Identities=16%  Similarity=0.072  Sum_probs=89.2

Q ss_pred             HHHHHHHHHcC--CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352           19 FAKTALIKIYS--HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (357)
Q Consensus        19 wvks~Li~~~~--~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~   96 (357)
                      .+|..+.+.+.  -.+.+|||++||+|......+..+..+++++|.+..+++.+++.++..+...+++++++|+..  +.
T Consensus        27 ~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~--~l  104 (182)
T d2fhpa1          27 KVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR--AL  104 (182)
T ss_dssp             HHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH--HH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchh--hh
Confidence            34444433332  268899999999999998888888989999999999999999998876666689999999854  22


Q ss_pred             hhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHH--hcccCCcEEEEEeCC
Q 018352           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (357)
Q Consensus        97 ~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~--~~LkpGG~fi~t~pd  148 (357)
                      ..+.....+||+|++.--.+.  ..   ....+..+.  .+|+++|++++....
T Consensus       105 ~~~~~~~~~fDlIflDPPY~~--~~---~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         105 EQFYEEKLQFDLVLLDPPYAK--QE---IVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHHHTTCCEEEEEECCCGGG--CC---HHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hhhcccCCCcceEEechhhhh--hH---HHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            222224568999998764333  11   334566554  579999999876543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.98  E-value=1.9e-09  Score=94.32  Aligned_cols=76  Identities=16%  Similarity=0.051  Sum_probs=62.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      .+.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|++..+..+  .+..++.+|+..         ...+||+|+
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~--~~~~~~~~d~~~---------~~~~fD~Vi  114 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK--GKFKVFIGDVSE---------FNSRVDIVI  114 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT--TSEEEEESCGGG---------CCCCCSEEE
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC--CCceEEECchhh---------hCCcCcEEE
Confidence            578999999999988877777777799999999999999999887664  367889998744         246899999


Q ss_pred             Eccchhh
Q 018352          111 CFQHLQM  117 (357)
Q Consensus       111 ~~~~lh~  117 (357)
                      ++-.+..
T Consensus       115 ~nPP~~~  121 (201)
T d1wy7a1         115 MNPPFGS  121 (201)
T ss_dssp             ECCCCSS
T ss_pred             EcCcccc
Confidence            9876544

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.96  E-value=5.3e-10  Score=97.71  Aligned_cols=70  Identities=16%  Similarity=0.045  Sum_probs=58.1

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      .+.+|||+|||+|..+...+..+..+|+|+|+++.+++.|+++..      +++|+++|+..         .+++||+|+
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~---------l~~~fD~Vi  112 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSE---------ISGKYDTWI  112 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGG---------CCCCEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhh---------cCCcceEEE
Confidence            578999999999987777667777899999999999999988754      56899999754         247899999


Q ss_pred             Eccch
Q 018352          111 CFQHL  115 (357)
Q Consensus       111 ~~~~l  115 (357)
                      |+-.+
T Consensus       113 ~NPPf  117 (197)
T d1ne2a_         113 MNPPF  117 (197)
T ss_dssp             ECCCC
T ss_pred             eCccc
Confidence            98644

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=2.5e-09  Score=94.54  Aligned_cols=119  Identities=13%  Similarity=0.067  Sum_probs=84.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCCcc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~~F  106 (357)
                      +..+|||+|||+|..+..++.+  ..++++++|+++++++.|++.++..+...+++++.+|..+.  ...+..  ...+|
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~--l~~l~~~~~~~~~  133 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL--IPQLKKKYDVDTL  133 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH--GGGHHHHSCCCCE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccc--ccchhhccccccc
Confidence            3469999999999888877765  45799999999999999999998777666899999997542  111111  24689


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE---eCCchHHHHHH
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKY  156 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t---~pd~~~i~~~~  156 (357)
                      |+|.+-..-.+     ......+.++.++|||||++++.   .+.....++.+
T Consensus       134 D~ifiD~~~~~-----~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~v  181 (214)
T d2cl5a1         134 DMVFLDHWKDR-----YLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYV  181 (214)
T ss_dssp             EEEEECSCGGG-----HHHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHH
T ss_pred             ceeeecccccc-----cccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHH
Confidence            99987642111     12334577788999999988764   34444444433

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.5e-09  Score=93.47  Aligned_cols=140  Identities=10%  Similarity=0.042  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHcC--CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc
Q 018352           18 EFAKTALIKIYS--HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (357)
Q Consensus        18 nwvks~Li~~~~--~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~   94 (357)
                      .|+...+.....  .+..+|||||||+|.....++.. +..+++|+|+|+++++.|++..+.++...++.+...+....-
T Consensus        46 ~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~  125 (250)
T d2h00a1          46 HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL  125 (250)
T ss_dssp             HHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS
T ss_pred             HHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhh
Confidence            666654422211  23569999999999777666554 567999999999999999999988877777888887654432


Q ss_pred             hhhhhhhcCCcccEEEEccchhhccCC-------------------------------HHHHHHHHHHHHhcccCCcEEE
Q 018352           95 FETQMQEKANQADLVCCFQHLQMCFET-------------------------------EERARRLLQNVSSLLKPGGYFL  143 (357)
Q Consensus        95 ~~~~l~~~~~~FDlV~~~~~lh~~fes-------------------------------~~~~~~~L~~i~~~LkpGG~fi  143 (357)
                      +........++||+|+|+--++..-+.                               ..-.++++++....++..|.+.
T Consensus       126 ~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t  205 (250)
T d2h00a1         126 MDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYS  205 (250)
T ss_dssp             TTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEE
T ss_pred             hhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEE
Confidence            211111135689999998765531100                               0125667788888899999886


Q ss_pred             EEeCCc---hHHHHHHH
Q 018352          144 GITPDS---STIWAKYQ  157 (357)
Q Consensus       144 ~t~pd~---~~i~~~~~  157 (357)
                      ......   ..+.+.++
T Consensus       206 ~~ig~~~~l~~i~~~L~  222 (250)
T d2h00a1         206 CMLGKKCSLAPLKEELR  222 (250)
T ss_dssp             EEESSTTSHHHHHHHHH
T ss_pred             EEecchhhHHHHHHHHH
Confidence            554432   44555443

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=8.3e-09  Score=94.26  Aligned_cols=108  Identities=17%  Similarity=0.039  Sum_probs=78.2

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      ..+|||+|||+|..+..++..+..+|+++|+|+.+++.|+++.+..+...++.+..+|......     ...++||+|+|
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~-----~~~~~fDlIVs  185 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-----EKFASIEMILS  185 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-----GGTTTCCEEEE
T ss_pred             ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccc-----cccCcccEEEE
Confidence            4589999999998777776667789999999999999999999887666677888888765221     13478999999


Q ss_pred             ccchh---------hccCCH----------HHHHHHHHHHHhcccCCcEEEEEeC
Q 018352          112 FQHLQ---------MCFETE----------ERARRLLQNVSSLLKPGGYFLGITP  147 (357)
Q Consensus       112 ~~~lh---------~~fes~----------~~~~~~L~~i~~~LkpGG~fi~t~p  147 (357)
                      +--.-         .-+|..          +..+++   +.+.|+|||++++-+.
T Consensus       186 NPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~Eig  237 (271)
T d1nv8a_         186 NPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEIG  237 (271)
T ss_dssp             CCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEECC
T ss_pred             cccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEEEEC
Confidence            74210         001211          223333   4578999999998754

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.85  E-value=1.9e-08  Score=90.49  Aligned_cols=104  Identities=20%  Similarity=0.255  Sum_probs=80.2

Q ss_pred             HHHHHcC--CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh
Q 018352           23 ALIKIYS--HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (357)
Q Consensus        23 ~Li~~~~--~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l   99 (357)
                      .++..+-  ....+|||||||+|..+..++++ +..+++..|+.+ .++       ......+++++.+|..+ +.    
T Consensus        71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~-------~~~~~~ri~~~~gd~~~-~~----  137 (244)
T d1fp1d2          71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VIE-------NAPPLSGIEHVGGDMFA-SV----  137 (244)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHT-------TCCCCTTEEEEECCTTT-CC----
T ss_pred             HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hhh-------ccCCCCCeEEecCCccc-cc----
Confidence            3444443  34679999999999999888876 556899999843 332       22223479999999865 22    


Q ss_pred             hhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                          ...|+|++...+|. + +.++..++|+++++.|+|||.+++.
T Consensus       138 ----p~~D~~~l~~vLh~-~-~de~~~~iL~~~~~aL~pgg~llI~  177 (244)
T d1fp1d2         138 ----PQGDAMILKAVCHN-W-SDEKCIEFLSNCHKALSPNGKVIIV  177 (244)
T ss_dssp             ----CCEEEEEEESSGGG-S-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----ccceEEEEehhhhh-C-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence                24599999999998 6 6788999999999999999999887

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=9.8e-09  Score=88.29  Aligned_cols=106  Identities=9%  Similarity=0.042  Sum_probs=79.8

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      .+.+|||++||+|......+.++..+|++||.+..+++.+++.++.... .++.++.+|+..  +   +.....+||+|+
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~--~---l~~~~~~fDlIf  116 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMS--F---LAQKGTPHNIVF  116 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHH--H---HSSCCCCEEEEE
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccc--c---ccccccccCEEE
Confidence            4679999999999988888888999999999999999999998876543 367888888643  1   222457899999


Q ss_pred             EccchhhccCCHHHHHHHHHHHH--hcccCCcEEEEEeC
Q 018352          111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITP  147 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~--~~LkpGG~fi~t~p  147 (357)
                      +.-....     .....++..+.  .+|+++|.+++...
T Consensus       117 ~DPPY~~-----~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         117 VDPPFRR-----GLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             ECCSSST-----TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EcCcccc-----chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            8764333     12334455554  47999999998643

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=7.9e-09  Score=91.56  Aligned_cols=107  Identities=14%  Similarity=0.136  Sum_probs=81.6

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh-hhcCCccc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l-~~~~~~FD  107 (357)
                      ...+|||||||+|..+..++.+  ..++++.+|++++..+.|++.++..+...+++++.+|+.... ...+ ....++||
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l-~~~~~~~~~~~fD  137 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL-DELLAAGEAGTFD  137 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHH-HHHHHTTCTTCEE
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcc-hhhhhhcccCCcc
Confidence            4579999999999777766654  357999999999999999999988777778999999975421 1111 11257899


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|.....       .+.....+..+.++|+|||.+++.
T Consensus       138 ~ifiD~d-------k~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         138 VAVVDAD-------KENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             EEEECSC-------STTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEeCC-------HHHHHHHHHHHHHHhcCCcEEEEe
Confidence            9987542       223456678888999999999987

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.71  E-value=3.3e-08  Score=92.04  Aligned_cols=109  Identities=21%  Similarity=0.226  Sum_probs=80.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHh------cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~------~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      ++.+|||.|||+|+.+......      ...+++|+|+++.+++.|+........  ...+..+|.....       ...
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-------~~~  187 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-------LVD  187 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-------CCC
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcccccccc-------ccc
Confidence            5678999999999988776542      123799999999999999887765433  5667788765533       357


Q ss_pred             cccEEEEccchhhccCCHHH---------------HHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          105 QADLVCCFQHLQMCFETEER---------------ARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~---------------~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +||+|+++-.+.... ..+.               ...++..+.+.|+|||++++.+|++
T Consensus       188 ~fD~vi~NPPy~~~~-~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         188 PVDVVISDLPVGYYP-DDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             CEEEEEEECCCSEES-CHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             cccccccCCCCCCCc-cchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            899999986543211 1111               2347999999999999999988875

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.69  E-value=4.9e-08  Score=87.66  Aligned_cols=96  Identities=16%  Similarity=0.124  Sum_probs=76.0

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ...+|||||||+|..+..++++ +..++++.|+. +.++.+       ....+++|+.+|..+. .        ..+|++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~-------~~~~rv~~~~gD~f~~-~--------p~aD~~  142 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENL-------SGSNNLTYVGGDMFTS-I--------PNADAV  142 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTC-------CCBTTEEEEECCTTTC-C--------CCCSEE
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhC-------cccCceEEEecCcccC-C--------CCCcEE
Confidence            3478999999999988888777 55699999984 333322       2234799999998752 2        358999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCC---cEEEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPG---GYFLGI  145 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpG---G~fi~t  145 (357)
                      ++...+|. + +.++..++|+++++.|+||   |++++.
T Consensus       143 ~l~~vLHd-w-~d~~~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         143 LLKYILHN-W-TDKDCLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             EEESCGGG-S-CHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             EEEeeccc-C-ChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence            99999998 6 6788999999999999999   666665

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.60  E-value=4.5e-07  Score=84.12  Aligned_cols=178  Identities=15%  Similarity=0.099  Sum_probs=108.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc----CCCceeEEEEcCCCCCchhhhhhhcC
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ----RKNFIAEFFEADPCAENFETQMQEKA  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~----~~~~~v~f~~~D~~~~~~~~~l~~~~  103 (357)
                      .+...+||.||+|.|+.+..+++. +..+++++||+++.++.|++.+...    ....+++++.+|+..  +   +....
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~--~---l~~~~  149 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA--Y---LERTE  149 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH--H---HHHCC
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHH--H---hhhcC
Confidence            345679999999999888877766 4679999999999999999876431    113478999999754  2   22245


Q ss_pred             CcccEEEEccchhhccCCH-H--HHHHHHHHHHhcccCCcEEEEEe--C--CchHHHHHHHHhHHhhhcCCCCCCCCCCC
Q 018352          104 NQADLVCCFQHLQMCFETE-E--RARRLLQNVSSLLKPGGYFLGIT--P--DSSTIWAKYQKNVEAYHNRSSSMKPNLVP  176 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~-~--~~~~~L~~i~~~LkpGG~fi~t~--p--d~~~i~~~~~~~~~~~~~~~~~~~~~~fg  176 (357)
                      .+||+|++...-.+..... .  -.+++++.+++.|+|||+|+...  +  ..+.+.+.+.+.+.           ..|+
T Consensus       150 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~-----------~~F~  218 (312)
T d1uira_         150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVR-----------EAFR  218 (312)
T ss_dssp             CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHH-----------TTCS
T ss_pred             CcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHH-----------HhCc
Confidence            7899998643210100000 0  12568999999999999998753  2  22344444433221           1344


Q ss_pred             CccCCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEE
Q 018352          177 NCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEY  234 (357)
Q Consensus       177 n~i~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glel  234 (357)
                      +.   ..|..       ..|.||..+.|.+.....+.  --.....+..-.++.++++
T Consensus       219 ~V---~~y~~-------~vPs~~~~w~f~~aS~~~~p--~~~~~~~~~~~~~~~~~~~  264 (312)
T d1uira_         219 YV---RSYKN-------HIPGFFLNFGFLLASDAFDP--AAFSEGVIEARIRERNLAL  264 (312)
T ss_dssp             EE---EEEEE-------EEGGGTEEEEEEEEESSSCT--TCCCTTHHHHHHHHTTCCC
T ss_pred             eE---EEEEe-------eeCCcCCCCEeEEEeCCCCc--cccChhhhhhhHhhcCCCc
Confidence            32   12332       24678877777665432221  1223344555556666654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.60  E-value=4.7e-08  Score=89.36  Aligned_cols=112  Identities=13%  Similarity=0.061  Sum_probs=80.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc---------CCCceeEEEEcCCCCCchhhhh
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ---------RKNFIAEFFEADPCAENFETQM   99 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~---------~~~~~v~f~~~D~~~~~~~~~l   99 (357)
                      .+...+||.||+|.|+.+..+++.+..+++++||++.+++.|++-....         ....+++++.+|+..  +   +
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~--~---l  144 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFE--F---I  144 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHH--H---H
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHH--H---H
Confidence            4566899999999999888887777789999999999999998755321         123478999999753  2   2


Q ss_pred             hhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       100 ~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      . ..++||+|++-..-...-...-.-+.+++.+++.|+|||+++...
T Consensus       145 ~-~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         145 K-NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             H-HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             h-ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            2 257899998754221100000012578999999999999998753

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.57  E-value=3.9e-07  Score=81.42  Aligned_cols=96  Identities=17%  Similarity=0.155  Sum_probs=75.1

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ...+|||||||+|..+..++++ +..++++.|+.+. ++       ......+++++.+|.+.. .      +  ..|++
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~-------~~~~~~r~~~~~~d~~~~-~------P--~ad~~  143 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE-------DAPSYPGVEHVGGDMFVS-I------P--KADAV  143 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT-------TCCCCTTEEEEECCTTTC-C------C--CCSCE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh-------hcccCCceEEeccccccc-C------C--CcceE
Confidence            3578999999999999888887 5569999999753 22       222234789999998652 2      2  35777


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ++...+|. + +.++..++|+++++.|+|||.+++.
T Consensus       144 ~l~~vlh~-~-~d~~~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         144 FMKWICHD-W-SDEHCLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             ECSSSSTT-S-CHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred             EEEEEeec-C-CHHHHHHHHHHHHHhcCCCceEEEE
Confidence            78888887 5 6788999999999999999998876

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.48  E-value=3.1e-07  Score=81.42  Aligned_cols=106  Identities=10%  Similarity=0.074  Sum_probs=81.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh-hh--cCCc
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QE--KANQ  105 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l-~~--~~~~  105 (357)
                      ...+|||+|+++|..+..++.+  ..++++.+|++++..+.|++.++..+...+++++.+|+... + ..+ ..  ..++
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~-L-~~l~~~~~~~~~  136 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV-L-DEMIKDEKNHGS  136 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH-H-HHHHHCGGGTTC
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHH-H-HHHHhccccCCc
Confidence            4579999999999777777655  35799999999999999999998877777899999997541 1 111 11  2468


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ||+|+.-..       .......++.+.++|+|||.+++.
T Consensus       137 fD~iFiDa~-------k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         137 YDFIFVDAD-------KDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             BSEEEECSC-------STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             eeEEEeccc-------hhhhHHHHHHHHhhcCCCcEEEEc
Confidence            999987542       123456788888999999999987

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.43  E-value=5.4e-07  Score=77.04  Aligned_cols=110  Identities=13%  Similarity=0.095  Sum_probs=79.1

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .+.+|||+.||+|......+.++..+++.||.+..+++..++.++..+.. ....+...|+..  +... .....+||+|
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~--~l~~-~~~~~~fDlI  119 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLD--FLKQ-PQNQPHFDVV  119 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHH--HTTS-CCSSCCEEEE
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccc--cccc-cccCCcccEE
Confidence            46799999999999999988899999999999999999999988765432 245556666432  1000 1124579999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHH--hcccCCcEEEEEeCC
Q 018352          110 CCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~--~~LkpGG~fi~t~pd  148 (357)
                      ++---...     ......+..+.  .+|+++|++++..+.
T Consensus       120 FlDPPY~~-----~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         120 FLDPPFHF-----NLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             EECCCSSS-----CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             EechhHhh-----hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            98765433     22445666665  479999999987544

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.39  E-value=2.8e-07  Score=79.99  Aligned_cols=103  Identities=18%  Similarity=0.197  Sum_probs=71.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||.|||+|.++..+...  ....++|+|+++.+++.+          ....++++|.....       ....||
T Consensus        18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~----------~~~~~~~~~~~~~~-------~~~~fd   80 (223)
T d2ih2a1          18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWE-------PGEAFD   80 (223)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCC-------CSSCEE
T ss_pred             CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc----------ccceeeeeehhccc-------cccccc
Confidence            46789999999999988877654  445799999998765432          13466777754432       247899


Q ss_pred             EEEEccchhhcc--CC-----------------------HHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          108 LVCCFQHLQMCF--ET-----------------------EERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       108 lV~~~~~lh~~f--es-----------------------~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      +|+++..+....  ..                       ..-...++..+.+.|++||++.+.+|++
T Consensus        81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1          81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence            999875432100  00                       0012457888999999999999888775

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.3e-06  Score=79.84  Aligned_cols=114  Identities=11%  Similarity=0.020  Sum_probs=80.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc---CCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ---RKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~---~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +...+||-||-|.|+.+..+++. +..+++++||++++++.|++.+...   -...+++++.+|+..  +   +....++
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~--~---l~~~~~~  151 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE--F---MKQNQDA  151 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH--H---HHTCSSC
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHH--H---HhcCCCC
Confidence            45679999999999888888776 5779999999999999999876421   113478999999754  2   2224578


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ||+|++-..-.......-.-+++++.+++.|+|||+|+....+
T Consensus       152 yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         152 FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            9999975421111101111346899999999999999987433

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.31  E-value=3.5e-06  Score=71.93  Aligned_cols=113  Identities=13%  Similarity=0.120  Sum_probs=82.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCccc
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FD  107 (357)
                      ..++..++|..||.||.+..++... ++|+|+|..+++++.|+++..     .++.+++.+...  +...+.. ..+.+|
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~~-----~~~~~~~~~f~~--~~~~l~~~~~~~vd   87 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLHL-----PGLTVVQGNFRH--LKRHLAALGVERVD   87 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCC-----TTEEEEESCGGG--HHHHHHHTTCSCEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhccc-----cceeEeehHHHH--HHHHHHHcCCCccC
Confidence            4588999999999999999998865 599999999999999987532     267888887654  3322221 246799


Q ss_pred             EEEEccchhh-----ccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          108 LVCCFQHLQM-----CFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       108 lV~~~~~lh~-----~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .|+.-.++-.     ...........|....+.|++||.+++.+..+
T Consensus        88 gIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          88 GILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             EEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             EEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            9987543211     11112345568899999999999999887776

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.30  E-value=3.8e-06  Score=76.27  Aligned_cols=114  Identities=12%  Similarity=0.058  Sum_probs=81.5

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc---CCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ---RKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~---~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +...+||-||-|.|+.+..+++. +..+++++||+++.++.|++-+...   -...+++++.+|+..  +   +.....+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~--~---l~~~~~~  148 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM--H---IAKSENQ  148 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH--H---HHTCCSC
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHH--H---HhhcCCC
Confidence            45679999999999888887765 5679999999999999999876431   123478999999754  2   2224578


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ||+|++-..-.......=--+++++.+++.|+|||+|+....+
T Consensus       149 yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence            9999875321110000001356899999999999999987544

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.23  E-value=7.3e-07  Score=81.99  Aligned_cols=114  Identities=18%  Similarity=0.085  Sum_probs=81.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcC---CCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +...+||-||.|.|+.+..+++. +..+++++||++.+++.|++.+....   ...+++++.+|+..  +   +....++
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~--~---l~~~~~~  162 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE--Y---VRKFKNE  162 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH--H---GGGCSSC
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHH--H---HhcCCCC
Confidence            45679999999999888888776 46789999999999999998664321   13478899999754  2   2224578


Q ss_pred             ccEEEEccchhhccCC-HHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          106 ADLVCCFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       106 FDlV~~~~~lh~~fes-~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ||+|++-..-...... .--.+++++.+++.|+|||+|+....+
T Consensus       163 yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         163 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             EEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            9999975422110000 001357899999999999999987654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.21  E-value=7.9e-06  Score=72.46  Aligned_cols=62  Identities=8%  Similarity=0.002  Sum_probs=53.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~   95 (357)
                      .++.+|||||||+|..+..++..+ .+++++|+++.+++.+++++...   .+++++++|+...++
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~   81 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKF   81 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCC
T ss_pred             CCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhccc
Confidence            478999999999999888888764 59999999999999999887653   278999999987665

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.21  E-value=1.3e-06  Score=80.80  Aligned_cols=114  Identities=11%  Similarity=0.038  Sum_probs=79.4

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcC---CCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +...+||-||-|.|+.+..+++. +..+++++||++++++.|++-+....   ...+++++.+|+..  +   +....++
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~--~---l~~~~~~  179 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE--F---LKNHKNE  179 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH--H---HHHCTTC
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHH--H---HHhCCCC
Confidence            45679999999999998888776 45799999999999999998764321   12468888888753  2   2234678


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      ||+|++-..-...-...--.+.+++.+++.|+|||+++....+
T Consensus       180 yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         180 FDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             EEEEEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             CCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence            9999975421110001112467899999999999999987544

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.20  E-value=3.1e-06  Score=78.31  Aligned_cols=120  Identities=17%  Similarity=0.075  Sum_probs=82.9

Q ss_pred             HHHHHHcC--CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352           22 TALIKIYS--HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (357)
Q Consensus        22 s~Li~~~~--~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~   97 (357)
                      |++....+  .++.+|||+|||.|+=+..++..  +.+.+++.|+++.-++..+++.+..+.. ++.....|......  
T Consensus       105 S~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~~~--  181 (313)
T d1ixka_         105 SMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGE--  181 (313)
T ss_dssp             HHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGG--
T ss_pred             ccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-cccccccccccccc--
Confidence            44444433  47899999999999977766654  4568999999999999998888765442 56666666543222  


Q ss_pred             hhhhcCCcccEEEEcc------chh------hccCCH-------HHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           98 QMQEKANQADLVCCFQ------HLQ------MCFETE-------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        98 ~l~~~~~~FDlV~~~~------~lh------~~fes~-------~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                          ....||.|++-.      .++      +-+ +.       ....++|.++.+.|||||+++-+|++-
T Consensus       182 ----~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~-~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         182 ----LNVEFDKILLDAPCTGSGTIHKNPERKWNR-TMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             ----GCCCEEEEEEECCTTSTTTCC--------C-CHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ----ccccccEEEEccccccCCceeeccchhhhh-hhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence                357899998621      111      101 12       224578999999999999998887664

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.15  E-value=2.1e-06  Score=78.64  Aligned_cols=116  Identities=13%  Similarity=0.036  Sum_probs=81.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc---CCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ---RKNFIAEFFEADPCAENFETQMQEKANQ  105 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~---~~~~~v~f~~~D~~~~~~~~~l~~~~~~  105 (357)
                      +...+||=||-|.|+.+..+++. +..+++++||+++.++.|++-+...   ....+++.+.+|+...-.    ....++
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~----~~~~~~  154 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK----NAAEGS  154 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH----TSCTTC
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHh----hccccC
Confidence            45579999999999998888776 5579999999999999999865421   123478899998744111    112468


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ||+|++-..-.......=-.+.+++.+++.|+|||+++....+.
T Consensus       155 yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         155 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             ccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence            99998743211100000013568999999999999999986553

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.14  E-value=4.3e-06  Score=74.11  Aligned_cols=111  Identities=14%  Similarity=0.081  Sum_probs=73.6

Q ss_pred             HHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh-----cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC
Q 018352           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (357)
Q Consensus        19 wvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~-----~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~   93 (357)
                      |+-+.||.+.-  ..+|||+|++.|+.+..|+..     ..++++|+|+.+.....+..      ...+++++++|....
T Consensus        70 ~~~~eli~~~K--Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs~~~  141 (232)
T d2bm8a1          70 AVYHDMLWELR--PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDL  141 (232)
T ss_dssp             HHHHHHHHHHC--CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCS
T ss_pred             HHHHHHHHHhC--CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeecccccH
Confidence            55567777664  369999999999877665432     35799999998654322111      123789999998876


Q ss_pred             chhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        94 ~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .....+  ....+|+|+.-.+ |.   ....... + +....|++||++++.
T Consensus       142 ~~~~~l--~~~~~dlIfID~~-H~---~~~v~~~-~-~~~~lLk~GG~iIve  185 (232)
T d2bm8a1         142 TTFEHL--REMAHPLIFIDNA-HA---NTFNIMK-W-AVDHLLEEGDYFIIE  185 (232)
T ss_dssp             GGGGGG--SSSCSSEEEEESS-CS---SHHHHHH-H-HHHHTCCTTCEEEEC
T ss_pred             HHHHHH--HhcCCCEEEEcCC-cc---hHHHHHH-H-HHhcccCcCCEEEEE
Confidence            554433  2356888876543 54   2233332 3 456899999999876

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=6.9e-06  Score=69.89  Aligned_cols=119  Identities=17%  Similarity=0.091  Sum_probs=80.5

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh--hcC
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKA  103 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~--~~~  103 (357)
                      +++++.+||||||+.|+.+......  ....++|+|+.+.            .....+.++++|...........  ...
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~------------~~i~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM------------DPIVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC------------CCCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc------------cccCCceEeecccccchhhhhhhhhccC
Confidence            3578999999999999988876654  4578999998752            11236789999987744322211  135


Q ss_pred             CcccEEEEccchhhc-------cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc---hHHHHHHHH
Q 018352          104 NQADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK  158 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~-------fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~---~~i~~~~~~  158 (357)
                      .+||+|++-.+....       ..+.+-....+.-+.++|++||.|++-+.+.   ..+++.+.+
T Consensus        87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~  151 (180)
T d1ej0a_          87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS  151 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred             cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh
Confidence            689999997654321       1112223467777889999999999886554   445555543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=3.2e-05  Score=67.12  Aligned_cols=112  Identities=13%  Similarity=0.067  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (357)
Q Consensus        18 nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~   96 (357)
                      ..+.+..+-.++. +.+|||+|+|.|--..-++-. +..+++.+|.+..-+.-.++.....+.. ++++++..+....  
T Consensus        53 Hi~DSl~~~~~~~-~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~--  128 (207)
T d1jsxa_          53 HILDSIVVAPYLQ-GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP--  128 (207)
T ss_dssp             HHHHHHHHGGGCC-SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC--
T ss_pred             HhcchHhhhhhhc-CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhc--
Confidence            3455556666664 569999999999655555544 5579999999998888777766665443 7889998887643  


Q ss_pred             hhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus        97 ~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~  146 (357)
                           ...+||+|+|-.     |.+   ...+++-+...+++||.+++..
T Consensus       129 -----~~~~fD~V~sRA-----~~~---~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         129 -----SEPPFDGVISRA-----FAS---LNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             -----CCSCEEEEECSC-----SSS---HHHHHHHHTTSEEEEEEEEEEE
T ss_pred             -----cccccceehhhh-----hcC---HHHHHHHHHHhcCCCcEEEEEC
Confidence                 246899998865     444   4467888899999999999873

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.07  E-value=6.7e-07  Score=80.10  Aligned_cols=79  Identities=11%  Similarity=0.043  Sum_probs=62.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++.+|||||||+|..+..+++.+ .+|++||+++.+++.+++++...   .+++++++|+...++      +...++.
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~~---~n~~ii~~D~l~~~~------~~~~~~~   96 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLN---TRVTLIHQDILQFQF------PNKQRYK   96 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTC---SEEEECCSCCTTTTC------CCSSEEE
T ss_pred             CCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhhc---cchhhhhhhhhcccc------ccceeee
Confidence            3578899999999999888887765 59999999999998887776543   378999999988766      4456677


Q ss_pred             EEEccchhh
Q 018352          109 VCCFQHLQM  117 (357)
Q Consensus       109 V~~~~~lh~  117 (357)
                      |+++...|-
T Consensus        97 vv~NLPY~I  105 (245)
T d1yuba_          97 IVGNIPYHL  105 (245)
T ss_dssp             EEEECCSSS
T ss_pred             Eeeeeehhh
Confidence            777666554

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.3e-05  Score=72.90  Aligned_cols=114  Identities=14%  Similarity=0.084  Sum_probs=77.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      .++.+|||+|+|.|+=+..++.. ..+.++++|+++.-++..+++.+..+.  +......+......   .. ..+.||.
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~--~~~~~~~~~~~~~~---~~-~~~~fd~  174 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQ---WC-GEQQFDR  174 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHH---HH-TTCCEEE
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc--cceeeeccccccch---hc-ccccccE
Confidence            47889999999999987777655 446899999999999999998877644  22333333222111   11 3468999


Q ss_pred             EEEcc------chh------hccCC------HHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          109 VCCFQ------HLQ------MCFET------EERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       109 V~~~~------~lh------~~fes------~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      |++-.      .+.      +.+..      ..-..++|.++.+.|||||+++-+|++-
T Consensus       175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~  233 (284)
T d1sqga2         175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  233 (284)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence            98621      121      11111      1224679999999999999999887664

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=2.1e-05  Score=73.26  Aligned_cols=115  Identities=16%  Similarity=0.156  Sum_probs=78.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      .++.+|||+.||.|.++..++ ....+|+|+|+++++++.|++..+.++.. +++|+.+|....-..  .......+|+|
T Consensus       211 ~~~~~vlDLycG~G~fsl~La-~~~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~~~~~~~~~~~--~~~~~~~~d~v  286 (358)
T d1uwva2         211 QPEDRVLDLFCGMGNFTLPLA-TQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTK--QPWAKNGFDKV  286 (358)
T ss_dssp             CTTCEEEEESCTTTTTHHHHH-TTSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSS--SGGGTTCCSEE
T ss_pred             CCCceEEEecccccccchhcc-ccccEEEeccCcHHHHHHHHHhHHhcccc-cceeeecchhhhhhh--hhhhhccCceE
Confidence            367899999999998887764 45679999999999999999988776543 789999998653211  11134679999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~  157 (357)
                      +..-.=--       +..+++.+.+. +|. .++-..+|...+.+-+.
T Consensus       287 ilDPPR~G-------~~~~~~~l~~~-~~~-~ivYVSCnp~TlaRDl~  325 (358)
T d1uwva2         287 LLDPARAG-------AAGVMQQIIKL-EPI-RIVYVSCNPATLARDSE  325 (358)
T ss_dssp             EECCCTTC-------CHHHHHHHHHH-CCS-EEEEEESCHHHHHHHHH
T ss_pred             EeCCCCcc-------HHHHHHHHHHc-CCC-EEEEEeCCHHHHHHHHH
Confidence            87542111       12234444442 554 45666688877766554

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.00  E-value=2.2e-05  Score=74.15  Aligned_cols=128  Identities=12%  Similarity=0.026  Sum_probs=87.7

Q ss_pred             cchHHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHH-hcCCeEEEEeCChHHHHHHHHHhHhcCCC--------
Q 018352           10 ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKN--------   80 (357)
Q Consensus        10 ~~p~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~-~~~~~v~GiDiS~~~l~~A~~r~~~~~~~--------   80 (357)
                      .+|..++|.=+--.+++.+  .+.+|||..||+|.-...|+. .+..+|++.|+|+.+++.++++.+.+...        
T Consensus        26 YNp~q~~NRDlsvl~~~~~--~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~  103 (375)
T d2dula1          26 YNPRMALNRDIVVVLLNIL--NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGR  103 (375)
T ss_dssp             CCGGGHHHHHHHHHHHHHH--CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSE
T ss_pred             cCHHHhhhhHHHHHHHHHh--CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCcccccccccc
Confidence            3456665543333333333  457999999999988887766 47779999999999999999988765321        


Q ss_pred             ------ceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352           81 ------FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (357)
Q Consensus        81 ------~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i  152 (357)
                            ..+.+.+.|+..     .+......||+|-+--     |.+   +..+|..+.+.++.||.+.+|.-|...+
T Consensus       104 ~~~~~~~~~~~~~~Da~~-----~~~~~~~~fDvIDiDP-----fGs---~~pfldsAi~a~~~~Gll~vTaTD~a~L  168 (375)
T d2dula1         104 AILKGEKTIVINHDDANR-----LMAERHRYFHFIDLDP-----FGS---PMEFLDTALRSAKRRGILGVTATDGAPL  168 (375)
T ss_dssp             EEEESSSEEEEEESCHHH-----HHHHSTTCEEEEEECC-----SSC---CHHHHHHHHHHEEEEEEEEEEECCHHHH
T ss_pred             ccccccceeEeehhhhhh-----hhHhhcCcCCcccCCC-----CCC---cHHHHHHHHHHhccCCEEEEEecCchhh
Confidence                  124455555422     1222346799997654     333   3457888889999999999997775444

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.93  E-value=2.2e-05  Score=75.20  Aligned_cols=112  Identities=20%  Similarity=0.139  Sum_probs=78.4

Q ss_pred             CCCEEEEECCCCChhHHHHHHh---c-----------CCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCch
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA---L-----------IANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENF   95 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~---~-----------~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~   95 (357)
                      ++.+|||-+||+|+++....+.   .           ...+.|+|+++.+...|+...--.+.. ........|..... 
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~-  240 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE-  240 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC-
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh-
Confidence            5789999999999998766543   1           135999999999999998776443221 13445667765432 


Q ss_pred             hhhhhhcCCcccEEEEccchhhcc-------------CCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           96 ETQMQEKANQADLVCCFQHLQMCF-------------ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        96 ~~~l~~~~~~FDlV~~~~~lh~~f-------------es~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                            ...+||+|+++--+..-.             ......-.++..+.+.|++||++.+.+|++
T Consensus       241 ------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~  301 (425)
T d2okca1         241 ------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  301 (425)
T ss_dssp             ------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             ------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechH
Confidence                  357899999976543210             011122458999999999999999998864

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.00017  Score=65.22  Aligned_cols=78  Identities=10%  Similarity=0.015  Sum_probs=61.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++..|||||||.|..+..+++.+ .+++++++++.+++..++++.......+++++.+|+...++        ..++.
T Consensus        19 ~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~--------~~~~~   89 (278)
T d1zq9a1          19 LRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL--------PFFDT   89 (278)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--------CCCSE
T ss_pred             CCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh--------hhhhh
Confidence            3478899999999999998888775 59999999999999999988765444579999999987654        23456


Q ss_pred             EEEccch
Q 018352          109 VCCFQHL  115 (357)
Q Consensus       109 V~~~~~l  115 (357)
                      |+.+--.
T Consensus        90 vV~NLPY   96 (278)
T d1zq9a1          90 CVANLPY   96 (278)
T ss_dssp             EEEECCG
T ss_pred             hhcchHH
Confidence            6655433

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=0.0002  Score=65.09  Aligned_cols=115  Identities=10%  Similarity=-0.006  Sum_probs=76.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .++.+|||+|||.|+-+..++..  +...++++|+++.-++..+++.+..+.. ++.+...|........   ...+.||
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~---~~~~~fD  168 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSD---PRYHEVH  168 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTC---GGGTTEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccc---cccceee
Confidence            47899999999999977766553  5678999999999999999988776543 5778888865432211   0136799


Q ss_pred             EEEEccc------h------hhcc--C--C----HHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          108 LVCCFQH------L------QMCF--E--T----EERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       108 lV~~~~~------l------h~~f--e--s----~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .|++---      +      .+..  .  .    ....++++.++. .|+|||+++-+|++-
T Consensus       169 ~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl  229 (293)
T d2b9ea1         169 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL  229 (293)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred             EEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence            9986321      1      0100  0  0    111244666666 479999988776653

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=7.8e-05  Score=73.25  Aligned_cols=114  Identities=16%  Similarity=0.134  Sum_probs=73.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh---c----------------CCeEEEEeCChHHHHHHHHHhHhcCCC----ceeEEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA---L----------------IANYIGIDVATSGIGEARDTWENQRKN----FIAEFFE   87 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~---~----------------~~~v~GiDiS~~~l~~A~~r~~~~~~~----~~v~f~~   87 (357)
                      ++.+|+|-+||+|+++......   .                ...++|+|+++.+...|+-..--.+..    ....+..
T Consensus       164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~  243 (524)
T d2ar0a1         164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  243 (524)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhh
Confidence            5679999999999998765442   1                125899999999999988765432211    1112344


Q ss_pred             cCCCCCchhhhhhhcCCcccEEEEccchhhc----------cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352           88 ADPCAENFETQMQEKANQADLVCCFQHLQMC----------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus        88 ~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~----------fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      .+....+.     ....+||+|+++--+...          ......--.++..+.+.|++||++.+.+|++
T Consensus       244 ~~~l~~d~-----~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~  310 (524)
T d2ar0a1         244 GNTLGSDG-----ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  310 (524)
T ss_dssp             SCTTSHHH-----HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             hhhhhhcc-----cccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence            44333221     134689999997643210          0011112358999999999999999998875

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=6.9e-05  Score=66.87  Aligned_cols=77  Identities=6%  Similarity=-0.004  Sum_probs=56.8

Q ss_pred             CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl  108 (357)
                      ..++..|||||||+|..+..++.. ..+|+++|+++.+++..+++....   .+++++.+|+...++.........++-+
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~~---~~~~ii~~D~l~~~~~~~~~~~~~~~~v   94 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAEKMGQPLRV   94 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHHHHTSCEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhhc---cchhHHhhhhhhhcccccccccCCCeEE
Confidence            346889999999999888888765 469999999999999888765432   3789999999887664322222344544


Q ss_pred             E
Q 018352          109 V  109 (357)
Q Consensus       109 V  109 (357)
                      |
T Consensus        95 v   95 (252)
T d1qyra_          95 F   95 (252)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.53  E-value=0.00036  Score=61.53  Aligned_cols=118  Identities=15%  Similarity=0.136  Sum_probs=78.9

Q ss_pred             HHHHHHHHcCC--CCCEEEEECCCCChhHHHHHH-hcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352           20 AKTALIKIYSH--PYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (357)
Q Consensus        20 vks~Li~~~~~--~~~~VLDlGCG~G~~l~k~~~-~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~   96 (357)
                      +.+..+..+++  ...+|+|||+|.|--..-++- .+..+++.+|.+..-+.-.+.-.+..+.. ++.+++..+......
T Consensus        57 ~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~  135 (239)
T d1xdza_          57 YDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQR  135 (239)
T ss_dssp             HHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTC
T ss_pred             cchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhcccc
Confidence            34444555554  467999999999965555544 35679999999988777666655554432 677777765331110


Q ss_pred             hhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE-eCCc
Q 018352           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDS  149 (357)
Q Consensus        97 ~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t-~pd~  149 (357)
                         ....++||+|+|-.     |.+   ...++.-+...+++||.+++. .++.
T Consensus       136 ---~~~~~~~D~v~sRA-----va~---l~~ll~~~~~~l~~~g~~i~~KG~~~  178 (239)
T d1xdza_         136 ---KDVRESYDIVTARA-----VAR---LSVLSELCLPLVKKNGLFVALKAASA  178 (239)
T ss_dssp             ---TTTTTCEEEEEEEC-----CSC---HHHHHHHHGGGEEEEEEEEEEECC-C
T ss_pred             ---ccccccceEEEEhh-----hhC---HHHHHHHHhhhcccCCEEEEECCCCh
Confidence               01246899999875     433   456788899999999999987 4444

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.50  E-value=7e-05  Score=66.36  Aligned_cols=121  Identities=17%  Similarity=0.088  Sum_probs=70.0

Q ss_pred             cCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      ++.+..+|+|||||.|+.+...+.. +...+.|+|+--..-+ .-....... ..-+++...+... .+      +.+..
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~-~ni~~~~~~~dv~-~l------~~~~~  133 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYG-WNLVRLQSGVDVF-FI------PPERC  133 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTT-GGGEEEECSCCTT-TS------CCCCC
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCccccccc-cccccchhhhhHH-hc------CCCcC
Confidence            4678889999999999988877655 3357788888422100 000000000 0123343333211 11      45789


Q ss_pred             cEEEEccchhhccCCHH--HHHHHHHHHHhcccCCcEEEEEeCC--chHHHHHHH
Q 018352          107 DLVCCFQHLQMCFETEE--RARRLLQNVSSLLKPGGYFLGITPD--SSTIWAKYQ  157 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~--~~~~~L~~i~~~LkpGG~fi~t~pd--~~~i~~~~~  157 (357)
                      |+|+|-.+-+..-...+  ...++|.-+.+.|+|||.|++-+.+  ...+++++.
T Consensus       134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le  188 (257)
T d2p41a1         134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKME  188 (257)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHH
T ss_pred             CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHH
Confidence            99999764322111122  2336788888999999999988555  555665554

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.54  E-value=0.003  Score=54.55  Aligned_cols=54  Identities=22%  Similarity=0.273  Sum_probs=45.0

Q ss_pred             HHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhH
Q 018352           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE   75 (357)
Q Consensus        21 ks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~   75 (357)
                      -..+|+.+..++..|||.-||+|..+......+ .+++|+|++++.++.|++|++
T Consensus       202 ~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         202 IERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence            445677778899999999999996666554445 599999999999999999975

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.46  E-value=0.0021  Score=57.32  Aligned_cols=54  Identities=13%  Similarity=0.214  Sum_probs=45.0

Q ss_pred             HHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHh
Q 018352           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN   76 (357)
Q Consensus        22 s~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~   76 (357)
                      ..+|..+..++..|||.-||+|..+......+ .+++|+|++++.++.|++|+..
T Consensus       241 ~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lg-R~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         241 EFFIRMLTEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHhhhhcccCCCEEEecCCCCcHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHHHh
Confidence            45666778899999999999997666655555 4999999999999999999764

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.25  E-value=0.0049  Score=53.86  Aligned_cols=56  Identities=25%  Similarity=0.178  Sum_probs=46.9

Q ss_pred             HHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc
Q 018352           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (357)
Q Consensus        21 ks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~   77 (357)
                      -..+|..+..++..|||.-||+|..+......+. +++|+|+++..++.|++|++..
T Consensus       197 ~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         197 IERLVRALSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            4456777888999999999999977666655554 9999999999999999999753

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.12  E-value=0.0066  Score=56.27  Aligned_cols=101  Identities=16%  Similarity=0.167  Sum_probs=63.4

Q ss_pred             CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCC--CceeEEEEcCCCCCchhhh---hh-------
Q 018352           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQ---MQ-------  100 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~--~~~v~f~~~D~~~~~~~~~---l~-------  100 (357)
                      .+|.|+||..|..+....             ...|+..+++++..+.  ...+.++.-|.-..+|...   ++       
T Consensus        53 ~~IADlGCS~G~Ntl~~v-------------~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~  119 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAV-------------TELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDG  119 (359)
T ss_dssp             ECCEEESCCSSTTTTTGG-------------GTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTT
T ss_pred             eEEEEeCCCCCccHHHHH-------------HHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCC
Confidence            579999999997764431             1234444444433211  2244555555554443211   00       


Q ss_pred             ---------------hcCCcccEEEEccchhhccC------------------C-----------HHHHHHHHHHHHhcc
Q 018352          101 ---------------EKANQADLVCCFQHLQMCFE------------------T-----------EERARRLLQNVSSLL  136 (357)
Q Consensus       101 ---------------~~~~~FDlV~~~~~lh~~fe------------------s-----------~~~~~~~L~~i~~~L  136 (357)
                                     -+.++.|++.|.+++||+=.                  .           .++...+|+.=++-|
T Consensus       120 ~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL  199 (359)
T d1m6ex_         120 VCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEV  199 (359)
T ss_dssp             CEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHB
T ss_pred             CeEEEecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                           05688999999999999410                  0           235667899889999


Q ss_pred             cCCcEEEEEe
Q 018352          137 KPGGYFLGIT  146 (357)
Q Consensus       137 kpGG~fi~t~  146 (357)
                      +|||+++++.
T Consensus       200 v~GG~mvl~~  209 (359)
T d1m6ex_         200 VPGGRMVLTI  209 (359)
T ss_dssp             CTTCEEEEEE
T ss_pred             cCCcEEEEEE
Confidence            9999999884

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.10  E-value=0.0047  Score=52.16  Aligned_cols=108  Identities=13%  Similarity=-0.043  Sum_probs=68.5

Q ss_pred             cCCCCCEEEEECCCCCh-hHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cC
Q 018352           28 YSHPYVTVCDLYCGAGV-DVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~-~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~  103 (357)
                      -++++.+||-+|||..+ .+..+++. +..+++++|.++.-++.|++.-        +.. ..+....++...+..  ..
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G--------a~~-~~~~~~~~~~~~i~~~t~g   92 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG--------FEI-ADLSLDTPLHEQIAALLGE   92 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT--------CEE-EETTSSSCHHHHHHHHHSS
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc--------ccE-EEeCCCcCHHHHHHHHhCC
Confidence            35689999999999744 44555544 6679999999999998886552        111 223333344332211  24


Q ss_pred             CcccEEEEccc------hhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          104 NQADLVCCFQH------LQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~------lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ..+|+++-.-.      .|+.... ......++.+.++++|||++...
T Consensus        93 ~g~D~vid~vG~~~~~~~~~~~~~-~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          93 PEVDCAVDAVGFEARGHGHEGAKH-EAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGGS-BCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCcEEEEECccccccCCcccceee-cCcHHHHHHHHHHHhcCCEEEEe
Confidence            56899885432      2221111 11235688999999999999877

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0072  Score=55.11  Aligned_cols=59  Identities=19%  Similarity=0.220  Sum_probs=49.9

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~   93 (357)
                      .+.+|||||+|.|..+..++.. +..+++++|+++..++..++++...    ++.++.+|+...
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~----~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGS----PLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTS----SCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCC----CcEEEeCchhhc
Confidence            4678999999999988888876 5579999999999999998887543    678899998754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.95  E-value=0.054  Score=43.63  Aligned_cols=100  Identities=13%  Similarity=0.111  Sum_probs=64.1

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh---hhhh-cC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET---QMQE-KA  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~---~l~~-~~  103 (357)
                      .+++.+||-+|||. |..+..+++....+++++|.+++-++.|++.-..      . .+..|........   .+.. ..
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~------~-~~~~~~~~~~~~~~~~~~~~~~g   96 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD------V-TLVVDPAKEEESSIIERIRSAIG   96 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------E-EEECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc------E-EEeccccccccchhhhhhhcccc
Confidence            56889999999995 4455566666556999999999999888775321      1 2233332222211   1111 24


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ..+|+|+-.-.      +.    ..+..+.++|++||+++..
T Consensus        97 ~g~D~vid~~g------~~----~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          97 DLPNVTIDCSG------NE----KCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             SCCSEEEECSC------CH----HHHHHHHHHSCTTCEEEEC
T ss_pred             cCCceeeecCC------Ch----HHHHHHHHHHhcCCceEEE
Confidence            67999875432      11    2466677899999999876

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.84  E-value=0.011  Score=48.75  Aligned_cols=98  Identities=17%  Similarity=0.123  Sum_probs=63.4

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      ++++.+||=+|||. |..+..+++. +..+|+++|.++.-++.|++.-..       +++  |....+..+.+..  ...
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~-------~~i--~~~~~~~~~~v~~~t~g~   95 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT-------DIL--NYKNGHIEDQVMKLTNGK   95 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS-------EEE--CGGGSCHHHHHHHHTTTS
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc-------ccc--cccchhHHHHHHHHhhcc
Confidence            56889999999986 5556667666 456899999999988888654211       122  2222333222221  234


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+-.-.-.          ..+++..++|+|+|.++..
T Consensus        96 G~D~vid~~g~~----------~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          96 GVDRVIMAGGGS----------ETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             CEEEEEECSSCT----------THHHHHHHHEEEEEEEEEC
T ss_pred             CcceEEEccCCH----------HHHHHHHHHHhcCCEEEEE
Confidence            599987644221          2356677899999999876

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.67  E-value=0.017  Score=47.48  Aligned_cols=98  Identities=19%  Similarity=0.107  Sum_probs=61.5

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh---hhh--
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ---MQE--  101 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~---l~~--  101 (357)
                      .+++.+||-+|||. |..+..+++. +..+|+++|.+++-++.|++.-.      . .++  |..+.+..+.   +..  
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa------~-~vi--~~~~~~~~~~~~~i~~~~   96 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA------D-LTL--NRRETSVEERRKAIMDIT   96 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC------S-EEE--ETTTSCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccc------e-EEE--eccccchHHHHHHHHHhh
Confidence            35789999999984 4455666665 44589999999999988865421      1 112  3333332211   111  


Q ss_pred             cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ....+|+|+..-+-          ...++...++|++||+++..
T Consensus        97 ~~~g~Dvvid~vG~----------~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2          97 HGRGADFILEATGD----------SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             TTSCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCceEEeecCCc----------hhHHHHHHHHhcCCCEEEEE
Confidence            23569998754321          12367777899999998755

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.019  Score=46.88  Aligned_cols=97  Identities=15%  Similarity=0.107  Sum_probs=64.2

Q ss_pred             CCCCCEEEEECC-C-CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGC-G-~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||-.|+ | .|..+..+++....++++++-+++.++.+++.-.      . .+  .|..+.++.+.+..  ...
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga------~-~v--i~~~~~~~~~~i~~~t~~~   96 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA------H-EV--FNHREVNYIDKIKKYVGEK   96 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC------S-EE--EETTSTTHHHHHHHHHCTT
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCc------c-cc--cccccccHHHHhhhhhccC
Confidence            458899999997 3 3556667777766699999999888777764311      1 12  24444444443321  356


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+...+           ...+++..++|+|||+++..
T Consensus        97 g~d~v~d~~g-----------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          97 GIDIIIEMLA-----------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             CEEEEEESCH-----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CceEEeeccc-----------HHHHHHHHhccCCCCEEEEE
Confidence            7999986541           12467778899999999865

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.40  E-value=0.035  Score=49.10  Aligned_cols=72  Identities=14%  Similarity=0.028  Sum_probs=54.4

Q ss_pred             CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEc
Q 018352           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~  112 (357)
                      ++||||-||.|+...-+..+++..+.++|+++.+++.-+.++       ....+.+|+......     .-...|+++..
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-------~~~~~~~Di~~~~~~-----~~~~~dll~~g   68 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-------SAKLIKGDISKISSD-----EFPKCDGIIGG   68 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-------CSEEEESCTTTSCGG-----GSCCCSEEEEC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-------CCCCccCChhhCCHh-----HcccccEEeec
Confidence            479999999999988888889877889999998877665554       235678998876542     12468999876


Q ss_pred             cchh
Q 018352          113 QHLQ  116 (357)
Q Consensus       113 ~~lh  116 (357)
                      +-.+
T Consensus        69 ~PCq   72 (324)
T d1dcta_          69 PPCQ   72 (324)
T ss_dssp             CCCT
T ss_pred             cccc
Confidence            5444

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.17  E-value=0.015  Score=47.27  Aligned_cols=99  Identities=14%  Similarity=0.078  Sum_probs=62.3

Q ss_pred             cCCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F  106 (357)
                      -++++.+||-+|||. |..+..+++....+++++|.|++.++.|++.-..       .++...- .....   ....+.|
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~-------~~i~~~~-~~~~~---~~~~~~~   92 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD-------HYIATLE-EGDWG---EKYFDTF   92 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS-------EEEEGGG-TSCHH---HHSCSCE
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCc-------EEeeccc-hHHHH---Hhhhccc
Confidence            456899999999984 4455666666556899999999999988764211       1222110 11111   1134679


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|+..-+-....        .+....++|+|||+++..
T Consensus        93 d~vi~~~~~~~~~--------~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          93 DLIVVCASSLTDI--------DFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             EEEEECCSCSTTC--------CTTTGGGGEEEEEEEEEC
T ss_pred             ceEEEEecCCccc--------hHHHHHHHhhccceEEEe
Confidence            9887643222100        134567899999999876

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.041  Score=44.62  Aligned_cols=99  Identities=11%  Similarity=0.017  Sum_probs=62.6

Q ss_pred             cCCCCCEEEEECCCCChhH-HHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh---hhh-h
Q 018352           28 YSHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET---QMQ-E  101 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l-~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~---~l~-~  101 (357)
                      -..++.+||=+|||..+.+ ..+++. +..+|+++|.++.-++.|++.-..       .++..+-  .....   .+. .
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~-------~~~~~~~--~~~~~~~~~~~~~   93 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD-------LVLQISK--ESPQEIARKVEGQ   93 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-------EEEECSS--CCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc-------ccccccc--ccccccccccccc
Confidence            3568899999999976544 444444 556899999999999888654211       1122221  12211   111 1


Q ss_pred             cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       102 ~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ....+|+|+..-+-.          ..++...+++++||+++..
T Consensus        94 ~g~g~Dvvid~~G~~----------~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          94 LGCKPEVTIECTGAE----------ASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             HTSCCSEEEECSCCH----------HHHHHHHHHSCTTCEEEEC
T ss_pred             CCCCceEEEeccCCc----------hhHHHHHHHhcCCCEEEEE
Confidence            246799987644221          2467778899999999877

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.01  E-value=0.025  Score=50.53  Aligned_cols=73  Identities=15%  Similarity=0.049  Sum_probs=54.5

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      .+.+||||-||-|+....+..+++.-+.++|+++.+++.-+.++...        .++|+......     .-..+|+++
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~-----~~~~~Dll~   76 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEK-----TIPDHDILC   76 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGG-----GSCCCSEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchh-----hcceeeeee
Confidence            46899999999999999988889877888999999988877766432        24676654432     124689998


Q ss_pred             Eccchh
Q 018352          111 CFQHLQ  116 (357)
Q Consensus       111 ~~~~lh  116 (357)
                      ..+-.+
T Consensus        77 ggpPCq   82 (327)
T d2c7pa1          77 AGFPCQ   82 (327)
T ss_dssp             EECCCT
T ss_pred             cccccc
Confidence            755433

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=94.71  E-value=0.073  Score=46.49  Aligned_cols=108  Identities=10%  Similarity=0.031  Sum_probs=67.0

Q ss_pred             CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHH---HHHHhHhcCC-----CceeEEEEcCCCCCchhhhhhhcCC
Q 018352           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGE---ARDTWENQRK-----NFIAEFFEADPCAENFETQMQEKAN  104 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~---A~~r~~~~~~-----~~~v~f~~~D~~~~~~~~~l~~~~~  104 (357)
                      .+|||+-||.|.|+..++..+. +|++++-++.....   +-+|+.....     ..+++++++|..+  +   +.....
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~--~---L~~~~~  163 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT--A---LTDITP  163 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH--H---STTCSS
T ss_pred             CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHH--H---HhccCC
Confidence            4899999999999999887764 89999999876544   4444433211     2268999999643  1   111246


Q ss_pred             cccEEEEccchhhccCCH---HHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352          105 QADLVCCFQHLQMCFETE---ERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~---~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~  157 (357)
                      .||+|..--    ||...   ....+-++-++.++.       ..++.+.+++...
T Consensus       164 ~~DvIYlDP----MFp~~~Ksa~~kk~m~~l~~l~~-------~d~d~~~ll~~a~  208 (250)
T d2oyra1         164 RPQVVYLDP----MFPHKQKSALVKKEMRVFQSLVG-------PDLDADGLLEPAR  208 (250)
T ss_dssp             CCSEEEECC----CCCCCCC-----HHHHHHHHHSC-------CCTTGGGGHHHHH
T ss_pred             CCCEEEECC----CCccccccccchhHHHHHHhhcc-------CCCCHHHHHHHHH
Confidence            799999877    45321   122333333444332       3467777665544

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.66  E-value=0.073  Score=42.67  Aligned_cols=97  Identities=12%  Similarity=0.069  Sum_probs=60.2

Q ss_pred             CCCCCEEEEECCCCC-hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcc
Q 018352           29 SHPYVTVCDLYCGAG-VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQA  106 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G-~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~F  106 (357)
                      .+++.+||=+|||.= ..+..+++....+++++|.+++-++.|++.-.       ..++  |....+....+.. ..+.+
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga-------~~~i--~~~~~~~~~~~~~~~~g~~   95 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA-------SLTV--NARQEDPVEAIQRDIGGAH   95 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC-------SEEE--ETTTSCHHHHHHHHHSSEE
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc-------cccc--cccchhHHHHHHHhhcCCc
Confidence            568899999999863 34455556555799999999999988865421       1222  2223333322221 23444


Q ss_pred             cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+|.+..       ..    ..+....++|++||+++..
T Consensus        96 ~~i~~~~-------~~----~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          96 GVLVTAV-------SN----SAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             EEEECCS-------CH----HHHHHHHTTEEEEEEEEEC
T ss_pred             ccccccc-------cc----hHHHHHHHHhcCCcEEEEE
Confidence            5554433       11    2467788999999998865

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.60  E-value=0.091  Score=41.92  Aligned_cols=98  Identities=16%  Similarity=0.169  Sum_probs=60.9

Q ss_pred             cCCCCCEEEEECCCCChhH-HHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 018352           28 YSHPYVTVCDLYCGAGVDV-DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (357)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l-~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~  105 (357)
                      -.+++.+||=.|||.-+.+ ..+++....+++++|.+++-++.+++.-.        . ...|....++...+.. ..+.
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga--------~-~~~~~~~~~~~~~~~~~~~~~   94 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA--------D-LVVNPLKEDAAKFMKEKVGGV   94 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC--------S-EEECTTTSCHHHHHHHHHSSE
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCc--------c-eecccccchhhhhcccccCCC
Confidence            3668999999999986644 34444555689999999999888765311        1 1223333333322222 2344


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+|.+..       +.    ..+....++|+|||+++..
T Consensus        95 ~~~v~~~~-------~~----~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          95 HAAVVTAV-------SK----PAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             EEEEESSC-------CH----HHHHHHHHHEEEEEEEEEC
T ss_pred             ceEEeecC-------CH----HHHHHHHHHhccCCceEec
Confidence            55554332       11    3467788899999998876

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.32  E-value=0.11  Score=42.11  Aligned_cols=98  Identities=11%  Similarity=0.026  Sum_probs=63.1

Q ss_pred             CCCCCEEEEECCCCChh-HHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 018352           29 SHPYVTVCDLYCGAGVD-VDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~-l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~  105 (357)
                      .+++.+||=+|||.-+. +..+++. +...++++|.++.-++.|++.-.       .+++..  ...+....+.. .++.
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga-------~~~i~~--~~~~~~~~i~~~t~gg   96 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-------THVINS--KTQDPVAAIKEITDGG   96 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-------SEEEET--TTSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC-------eEEEeC--CCcCHHHHHHHHcCCC
Confidence            56899999999986443 3444444 67788999999999888876421       123333  23333332221 2467


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ||+|+-.-.      +.    ..++.+.++++|+|+++..
T Consensus        97 ~D~vid~~G------~~----~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          97 VNFALESTG------SP----EILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             EEEEEECSC------CH----HHHHHHHHTEEEEEEEEEC
T ss_pred             CcEEEEcCC------cH----HHHHHHHhcccCceEEEEE
Confidence            999875431      11    2466778899999998865

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.16  E-value=0.22  Score=38.21  Aligned_cols=100  Identities=11%  Similarity=-0.006  Sum_probs=62.7

Q ss_pred             CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      ++|+=+|+|. |..+.+.+......|+.+|.+++.++.+++++       ...++.+|..+..+.....  -...|.+++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~--i~~a~~vv~   71 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAG--IEDADMYIA   71 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTT--TTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcC--hhhhhhhcc
Confidence            4688888874 44444444444458999999999988776543       3568999998866544332  356888876


Q ss_pred             ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ..      .+. ....++..+.+.+.+. ..+..+-+.
T Consensus        72 ~t------~~d-~~N~~~~~~~k~~~~~-~iI~~~~~~  101 (132)
T d1lssa_          72 VT------GKE-EVNLMSSLLAKSYGIN-KTIARISEI  101 (132)
T ss_dssp             CC------SCH-HHHHHHHHHHHHTTCC-CEEEECSST
T ss_pred             cC------CcH-HHHHHHHHHHHHcCCc-eEEEEecCH
Confidence            32      122 2334455566677777 344444443

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=94.15  E-value=0.12  Score=45.07  Aligned_cols=114  Identities=15%  Similarity=0.079  Sum_probs=75.2

Q ss_pred             CCCEEEEECCCCChhHHHHHHh-----------------------------------------cCCeEEEEeCChHHHHH
Q 018352           31 PYVTVCDLYCGAGVDVDKWETA-----------------------------------------LIANYIGIDVATSGIGE   69 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~-----------------------------------------~~~~v~GiDiS~~~l~~   69 (357)
                      .+..++|-.||+|..+...+..                                         ....++|.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            4567999999999876543210                                         01246799999999998


Q ss_pred             HH---HHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccC-----CHHHHHHHHHHHHhcccCCcE
Q 018352           70 AR---DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGY  141 (357)
Q Consensus        70 A~---~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fe-----s~~~~~~~L~~i~~~LkpGG~  141 (357)
                      |+   ++.+..+....+.+.++|++...-..... .....++|+|+--.--=.+     ..+....+...+.+.|.....
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~-~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~  208 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV  208 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcchhcc-CCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcE
Confidence            85   45555555667899999987643222121 2466799999754322121     235678888889999966666


Q ss_pred             EEEE
Q 018352          142 FLGI  145 (357)
Q Consensus       142 fi~t  145 (357)
                      +++|
T Consensus       209 ~~it  212 (249)
T d1o9ga_         209 IAVT  212 (249)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6655

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.62  E-value=0.3  Score=38.89  Aligned_cols=103  Identities=13%  Similarity=0.066  Sum_probs=63.7

Q ss_pred             EEEEECCCC-ChhHH-HHHHhcC-CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352           34 TVCDLYCGA-GVDVD-KWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (357)
Q Consensus        34 ~VLDlGCG~-G~~l~-k~~~~~~-~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~  110 (357)
                      +|+=+|||. |+.+. .+.+.+. .+|+|+|.+++.++.|++...-       .-...+..  ..      .....|+|+
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~-------~~~~~~~~--~~------~~~~~dlIi   67 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-------DEGTTSIA--KV------EDFSPDFVM   67 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-------SEEESCGG--GG------GGTCCSEEE
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc-------hhhhhhhh--hh------hcccccccc
Confidence            578899997 54444 3433443 4899999999999988765211       00111110  01      235689987


Q ss_pred             EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHH
Q 018352          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (357)
Q Consensus       111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~  158 (357)
                      ..-       ..+....++.++...++++-.++-+.--...+.+.+.+
T Consensus        68 la~-------p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~  108 (171)
T d2g5ca2          68 LSS-------PVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN  108 (171)
T ss_dssp             ECS-------CHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH
T ss_pred             ccC-------CchhhhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence            544       45567788999999999987666544433455555543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.60  E-value=0.053  Score=44.47  Aligned_cols=100  Identities=14%  Similarity=0.078  Sum_probs=62.1

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh-hhcCCc
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l-~~~~~~  105 (357)
                      ++++.+||=+|||. |..+..+++. +...++.+|.+++-++.|++.-..       .++...-......... ....+.
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~-------~~i~~~~~~~~~~~~~~~~~~~G   98 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT-------DCLNPRELDKPVQDVITELTAGG   98 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-------EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC-------cccCCccchhhhhhhHhhhhcCC
Confidence            46889999999997 5455566555 566899999999988877664221       1221111111111111 112467


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpG-G~fi~t  145 (357)
                      +|+|+-.-.      +    ...+.+..+.|++| |.++..
T Consensus        99 ~d~vie~~G------~----~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2          99 VDYSLDCAG------T----AQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             BSEEEESSC------C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CcEEEEecc------c----chHHHHHHHHhhcCCeEEEec
Confidence            999875331      1    23477788899996 998876

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=93.53  E-value=0.84  Score=40.27  Aligned_cols=110  Identities=11%  Similarity=0.027  Sum_probs=73.6

Q ss_pred             CEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcC--CCceeEEEEcCCCCCchhhhhhhc---CCc
Q 018352           33 VTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK---ANQ  105 (357)
Q Consensus        33 ~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~l~~~---~~~  105 (357)
                      ..|+.||||-  |+..+-..  +..+++=+|. +++++.-++.++...  ...+..++..|+.. +....+...   ...
T Consensus        91 ~qvV~LGaGl--DTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~-~~~~~L~~~g~d~~~  166 (297)
T d2uyoa1          91 RQFVILASGL--DSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSA  166 (297)
T ss_dssp             CEEEEETCTT--CCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred             CeEEEeCccc--CChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccc-hHHHHHHhcCCCCCC
Confidence            4677799986  44444322  3346777774 677776666665432  23366788888865 343333321   234


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                      --++++-.++.| + +.+...++|+.+.+...||+.+++...+
T Consensus       167 ptl~i~EGvl~Y-L-~~~~~~~ll~~i~~~~~~GS~l~~d~~~  207 (297)
T d2uyoa1         167 RTAWLAEGLLMY-L-PATAQDGLFTEIGGLSAVGSRIAVETSP  207 (297)
T ss_dssp             CEEEEECSCGGG-S-CHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CEEEEEcccccc-C-CHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            456777778888 5 6788999999999999999999988544

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.34  E-value=0.4  Score=41.29  Aligned_cols=84  Identities=10%  Similarity=-0.034  Sum_probs=58.4

Q ss_pred             CCCEEEEECCCCCh---hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 018352           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (357)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~  103 (357)
                      ++..||=.|++.|-   .+..+++.+ .+|+++|.+++.++.+.+..+......++.++++|+.+..-..    ......
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            36789999999872   233444445 4999999999999998888776544447888999998754211    122234


Q ss_pred             CcccEEEEccch
Q 018352          104 NQADLVCCFQHL  115 (357)
Q Consensus       104 ~~FDlV~~~~~l  115 (357)
                      +..|+++.+.+.
T Consensus        88 g~iD~lVnnAg~   99 (257)
T d1xg5a_          88 SGVDICINNAGL   99 (257)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEecccc
Confidence            779998876543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.24  E-value=0.45  Score=37.70  Aligned_cols=100  Identities=11%  Similarity=0.048  Sum_probs=60.3

Q ss_pred             CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      ++|.=||||. |+.+.+.+.....+|++.|.+++.++.|++.-.       +.-. .+    ...     .-...|+|+.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~-------~~~~-~~----~~~-----~~~~~DiIil   63 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL-------VDEA-GQ----DLS-----LLQTAKIIFL   63 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTS-------CSEE-ES----CGG-----GGTTCSEEEE
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhc-------ccee-ee----ecc-----cccccccccc
Confidence            4677789995 433333333444499999999998887765421       0001 11    111     1256899875


Q ss_pred             ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~  156 (357)
                      .-       ......++++++...|+++-+++-+..-...+.+..
T Consensus        64 av-------p~~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~  101 (165)
T d2f1ka2          64 CT-------PIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPA  101 (165)
T ss_dssp             CS-------CHHHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHH
T ss_pred             cC-------cHhhhhhhhhhhhhhcccccceeeccccchHHHHHH
Confidence            32       345678899999999999887765533333343333

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.19  E-value=0.16  Score=40.95  Aligned_cols=98  Identities=15%  Similarity=0.087  Sum_probs=63.2

Q ss_pred             CCCCCEEEEECCCCChhH-HHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 018352           29 SHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l-~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~  105 (357)
                      +.++.+||=+|||..+.+ ..+++. +...++++|.+++-++.+++.-.       .+++..  .+......... ....
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga-------~~~i~~--~~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA-------DHVVDA--RRDPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC-------SEEEET--TSCHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc-------ceeecC--cccHHHHHHHhhCCCC
Confidence            578899999999876544 455544 66799999999988887775421       122322  22233222221 2356


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+|+..-+-.          ..++...++|++||+++..
T Consensus       101 ~d~vid~~g~~----------~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         101 VNVAMDFVGSQ----------ATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             EEEEEESSCCH----------HHHHHGGGGEEEEEEEEEC
T ss_pred             ceEEEEecCcc----------hHHHHHHHHHhCCCEEEEE
Confidence            99987654221          2367778899999999866

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.93  E-value=0.21  Score=40.13  Aligned_cols=97  Identities=14%  Similarity=0.090  Sum_probs=65.6

Q ss_pred             CCCCCEEEEECCCC--ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~--G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      ++++.+||=.|+|.  |..+..+++....+++++|.|++-++.+++.-..         ...|....++.+.+..  ...
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~---------~vi~~~~~d~~~~v~~~t~g~   96 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW---------QVINYREEDLVERLKEITGGK   96 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS---------EEEETTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe---------EEEECCCCCHHHHHHHHhCCC
Confidence            46889999997775  4456667676667999999999999888754211         1234444555444332  246


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+..-.-.           .+.....+|+++|+++..
T Consensus        97 g~d~v~d~~g~~-----------~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2          97 KVRVVYDSVGRD-----------TWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             CEEEEEECSCGG-----------GHHHHHHTEEEEEEEEEC
T ss_pred             CeEEEEeCccHH-----------HHHHHHHHHhcCCeeeec
Confidence            799987755322           256677899999988764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.072  Score=47.40  Aligned_cols=77  Identities=17%  Similarity=0.137  Sum_probs=52.3

Q ss_pred             CCEEEEECCCCChhHHHHHHhcCC--eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           32 YVTVCDLYCGAGVDVDKWETALIA--NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        32 ~~~VLDlGCG~G~~l~k~~~~~~~--~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      ..+|+||.||.|+....+..+++.  -+.++|+++.+++.-+.++.      ...++..|+....... ++  ...+|++
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~-~~--~~~~Dll   72 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEE-FD--RLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHH-HH--HHCCSEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhH-cC--CCCccEE
Confidence            468999999999988888777763  36799999988887666553      2345677776544322 11  2368999


Q ss_pred             EEccchhh
Q 018352          110 CCFQHLQM  117 (357)
Q Consensus       110 ~~~~~lh~  117 (357)
                      +..+-.+-
T Consensus        73 ~ggpPCq~   80 (343)
T d1g55a_          73 LMSPPCQP   80 (343)
T ss_dssp             EECCC---
T ss_pred             Eeeccccc
Confidence            87665443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.04  E-value=0.4  Score=38.86  Aligned_cols=47  Identities=17%  Similarity=-0.023  Sum_probs=36.3

Q ss_pred             CCCCCEEEEECCCCChhH-HHHHHh-cCCeEEEEeCChHHHHHHHHHhH
Q 018352           29 SHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWE   75 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l-~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~   75 (357)
                      ++++.+||=+|||..+.+ ...++. +..+|+++|.+++-++.|++.-.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA   75 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA   75 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence            568999999999965543 333443 56799999999999999988743

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.75  E-value=0.31  Score=38.89  Aligned_cols=98  Identities=17%  Similarity=0.188  Sum_probs=61.2

Q ss_pred             CCCCCEEEEECCC-C-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cC
Q 018352           29 SHPYVTVCDLYCG-A-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (357)
Q Consensus        29 ~~~~~~VLDlGCG-~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~  103 (357)
                      ..++.+||=+||+ . |..+..+++. +...|+++|.+++-++.+++.-.      . .++..  ...+.......  ..
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga------~-~~i~~--~~~~~~~~~~~~~~~   95 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA------D-YVINA--SMQDPLAEIRRITES   95 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC------S-EEEET--TTSCHHHHHHHHTTT
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC------c-eeecc--CCcCHHHHHHHHhhc
Confidence            5688999999974 2 3334444444 66799999999998888866421      1 22222  23333222211  24


Q ss_pred             CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +.||+|+..-+-          ...++.+.++|+|||+++..
T Consensus        96 ~~~d~vid~~g~----------~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          96 KGVDAVIDLNNS----------EKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             SCEEEEEESCCC----------HHHHTTGGGGEEEEEEEEEC
T ss_pred             ccchhhhccccc----------chHHHhhhhhcccCCEEEEe
Confidence            669999865421          12356667899999999866

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.05  E-value=0.19  Score=40.80  Aligned_cols=100  Identities=11%  Similarity=-0.028  Sum_probs=58.1

Q ss_pred             CCCCCEEEEECCCCChhH-HHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh-hhcCCc
Q 018352           29 SHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l-~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l-~~~~~~  105 (357)
                      ++++.+||=+|||..+.+ ..+++. +..+|+++|.+++-++.|++.-..       .++...-.+....... ....+.
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~-------~~i~~~~~d~~~~~~~~~~~~~G   97 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT-------ECLNPKDYDKPIYEVICEKTNGG   97 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS-------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc-------EEEcCCCchhHHHHHHHHhcCCC
Confidence            568999999999965543 344443 677999999999999988764221       1221111111111111 112457


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccC-CcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKP-GGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~Lkp-GG~fi~t  145 (357)
                      +|+|+-.-.-.          ..+.+....+++ +|.+++.
T Consensus        98 ~d~vid~~g~~----------~~~~~~~~~~~~~~G~~v~v  128 (174)
T d1p0fa2          98 VDYAVECAGRI----------ETMMNALQSTYCGSGVTVVL  128 (174)
T ss_dssp             BSEEEECSCCH----------HHHHHHHHTBCTTTCEEEEC
T ss_pred             CcEEEEcCCCc----------hHHHHHHHHHHHhcCceEEE
Confidence            99987543211          234555555654 6887765

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.48  E-value=0.46  Score=36.18  Aligned_cols=100  Identities=10%  Similarity=-0.029  Sum_probs=58.6

Q ss_pred             EEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEc
Q 018352           34 TVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (357)
Q Consensus        34 ~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~  112 (357)
                      +++=+|||. |..+.+.+......|+.+|.+++.++.++..        ....+.+|++.........  -...|.|++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~--------~~~~~~gd~~~~~~l~~a~--i~~a~~vi~~   71 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY--------ATHAVIANATEENELLSLG--IRNFEYVIVA   71 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT--------CSEEEECCTTCTTHHHHHT--GGGCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh--------CCcceeeecccchhhhccC--CccccEEEEE
Confidence            345568875 5455555555555899999999988876422        2356789998876644332  2467877664


Q ss_pred             cchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352          113 QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (357)
Q Consensus       113 ~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~  150 (357)
                      ..      +......+...+.+ +.+...++..+-+.+
T Consensus        72 ~~------~~~~~~~~~~~~~~-~~~~~~iiar~~~~~  102 (134)
T d2hmva1          72 IG------ANIQASTLTTLLLK-ELDIPNIWVKAQNYY  102 (134)
T ss_dssp             CC------SCHHHHHHHHHHHH-HTTCSEEEEECCSHH
T ss_pred             cC------chHHhHHHHHHHHH-HcCCCcEEeecccHh
Confidence            31      22223333333334 445567666655543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.87  E-value=0.3  Score=39.32  Aligned_cols=97  Identities=16%  Similarity=0.091  Sum_probs=61.1

Q ss_pred             CCCCCEEEEECC-C-CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGC-G-~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~  104 (357)
                      +.++.+||=.|. | .|..+..+++....++++++-+++-.+.+++.-    .  . ..+  |....++...+..  ...
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~G----a--~-~vi--~~~~~~~~~~v~~~t~~~   93 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLG----V--E-YVG--DSRSVDFADEILELTDGY   93 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTC----C--S-EEE--ETTCSTHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccccc----c--c-ccc--cCCccCHHHHHHHHhCCC
Confidence            457889999873 3 345666777776668999988887777665431    1  1 112  3333444333322  246


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .||+|+...+-           ..++.+.++|+++|+++..
T Consensus        94 g~d~v~d~~g~-----------~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          94 GVDVVLNSLAG-----------EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             CEEEEEECCCT-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             CEEEEEecccc-----------hHHHHHHHHhcCCCEEEEE
Confidence            79999875521           1355667899999999875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.35  E-value=0.7  Score=36.87  Aligned_cols=99  Identities=14%  Similarity=0.033  Sum_probs=58.1

Q ss_pred             CCCCCEEEEECCCCCh-hHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEE-cCCCCCchhhhh-hhcCC
Q 018352           29 SHPYVTVCDLYCGAGV-DVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFE-ADPCAENFETQM-QEKAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~-~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~-~D~~~~~~~~~l-~~~~~  104 (357)
                      ++++.+||=+|||-++ .+..+++. +..+|+++|.+++-++.+++.-..       .++. .+.. ....... ....+
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~-------~~i~~~~~~-~~~~~~~~~~~~~   97 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT-------ECVNPQDYK-KPIQEVLTEMSNG   97 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-------EEECGGGCS-SCHHHHHHHHTTS
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe-------eEEecCCch-hHHHHHHHHHhcC
Confidence            5689999999998654 33344443 667999999999988887665321       1111 1111 1121111 11346


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpG-G~fi~t  145 (357)
                      .+|+|+-..+...          .++.....+++| |.++..
T Consensus        98 G~D~vid~~G~~~----------~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          98 GVDFSFEVIGRLD----------TMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             CBSEEEECSCCHH----------HHHHHHHHBCTTTCEEEEC
T ss_pred             CCCEEEecCCchh----------HHHHHHHHHhcCCcceEEe
Confidence            8999987553332          245555677776 555544

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=88.90  E-value=1.5  Score=35.14  Aligned_cols=97  Identities=13%  Similarity=-0.039  Sum_probs=62.0

Q ss_pred             CCCCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh-h-hhcCC
Q 018352           29 SHPYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M-QEKAN  104 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~-l-~~~~~  104 (357)
                      ++++.+||=.|++.|  ..+..+++....++++++-+++-++.+++.-..       ..+.  -......+. + .....
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~-------~vi~--~~~~~~~~~~~~~~~~~   97 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFD-------AAFN--YKTVNSLEEALKKASPD   97 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS-------EEEE--TTSCSCHHHHHHHHCTT
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhh-------hhcc--cccccHHHHHHHHhhcC
Confidence            358899998888654  455666666667999999998877766554211       1222  222222221 1 11346


Q ss_pred             cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      .+|+|+..-+           ...++...++|++||.++..
T Consensus        98 Gvd~v~D~vG-----------~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          98 GYDCYFDNVG-----------GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             CEEEEEESSC-----------HHHHHHHGGGEEEEEEEEEC
T ss_pred             CCceeEEecC-----------chhhhhhhhhccCCCeEEee
Confidence            7999976442           12467888999999999865

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=88.84  E-value=0.2  Score=40.16  Aligned_cols=95  Identities=17%  Similarity=0.118  Sum_probs=60.7

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      ++++.+||=+|||. |..+..+++....+++++|.+++-++.+++.-..       .++  |......   .....+.+|
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad-------~~i--~~~~~~~---~~~~~~~~D   95 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD-------EVV--NSRNADE---MAAHLKSFD   95 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS-------EEE--ETTCHHH---HHTTTTCEE
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCc-------EEE--ECchhhH---HHHhcCCCc
Confidence            56899999999985 4455667666556888999999888777654211       122  2222111   111246799


Q ss_pred             EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+..-+--.          .+....+.|++||+++..
T Consensus        96 ~vid~~g~~~----------~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          96 FILNTVAAPH----------NLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             EEEECCSSCC----------CHHHHHTTEEEEEEEEEC
T ss_pred             eeeeeeecch----------hHHHHHHHHhcCCEEEEe
Confidence            9875442111          255667899999999876

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.32  E-value=1.2  Score=35.17  Aligned_cols=100  Identities=10%  Similarity=0.014  Sum_probs=60.4

Q ss_pred             CCCCCEEEEECCCCCh-hHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh-hcCCc
Q 018352           29 SHPYVTVCDLYCGAGV-DVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ  105 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~-~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~-~~~~~  105 (357)
                      ++++.+||=.|||-.+ .+..+++. +...|+++|.+++-++.|++.-..       .++..+-........+. ...+.
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~-------~~i~~~~~~~~~~~~~~~~~~~g   98 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-------ECINPQDFSKPIQEVLIEMTDGG   98 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc-------EEEeCCchhhHHHHHHHHHcCCC
Confidence            5689999999998433 33333343 677999999999998888764321       12222111122221111 12467


Q ss_pred             ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +|+|+-.-.-.          ..++.+..++++||.++..
T Consensus        99 ~D~vid~~G~~----------~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          99 VDYSFECIGNV----------KVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             BSEEEECSCCH----------HHHHHHHHTBCTTTCEEEE
T ss_pred             CcEeeecCCCH----------HHHHHHHHhhcCCceeEEE
Confidence            99997654322          2467778899998876654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.73  E-value=2.8  Score=35.38  Aligned_cols=85  Identities=8%  Similarity=-0.028  Sum_probs=56.9

Q ss_pred             CCEEEEECCCCCh---hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 018352           32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN  104 (357)
Q Consensus        32 ~~~VLDlGCG~G~---~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~  104 (357)
                      +.++|=-|++.|-   .+..+++.+ .+|+.+|.+.+.++.+.+.........++.++.+|+.+..-..    ......+
T Consensus         3 GKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            5678888988762   223333444 5999999999999988877655433347889999998743211    1112346


Q ss_pred             cccEEEEccchhh
Q 018352          105 QADLVCCFQHLQM  117 (357)
Q Consensus       105 ~FDlV~~~~~lh~  117 (357)
                      ..|+++.+.+...
T Consensus        82 ~iDilVnnAg~~~   94 (254)
T d2gdza1          82 RLDILVNNAGVNN   94 (254)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CcCeecccccccc
Confidence            8999988776544

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.73  E-value=1.9  Score=36.52  Aligned_cols=84  Identities=10%  Similarity=0.063  Sum_probs=58.5

Q ss_pred             CCCEEEEECCCCCh---hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 018352           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (357)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~  103 (357)
                      .|..||=-|++.|-   .+..+++.+ .+|+.+|.+++.++...+.++..+  .++.++.+|+++..-..    ......
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G-~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            46788888998872   334444445 499999999999998888887653  36889999998753211    122245


Q ss_pred             CcccEEEEccchhh
Q 018352          104 NQADLVCCFQHLQM  117 (357)
Q Consensus       104 ~~FDlV~~~~~lh~  117 (357)
                      +..|+++.+.+..+
T Consensus        83 g~idilinnag~~~   96 (244)
T d1yb1a_          83 GDVSILVNNAGVVY   96 (244)
T ss_dssp             CCCSEEEECCCCCC
T ss_pred             CCCceeEeeccccc
Confidence            78999887765443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.44  E-value=2.2  Score=32.95  Aligned_cols=104  Identities=6%  Similarity=-0.077  Sum_probs=62.4

Q ss_pred             CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352           33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (357)
Q Consensus        33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~  111 (357)
                      .+|+=+|+|. |..+.+.+......++.+|.+++......+.....    .+.++.+|..........  .-...|.|++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~----~~~vi~Gd~~d~~~L~~a--~i~~a~~vi~   77 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD----NADVIPGDSNDSSVLKKA--GIDRCRAILA   77 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT----TCEEEESCTTSHHHHHHH--TTTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC----CcEEEEccCcchHHHHHh--ccccCCEEEE
Confidence            4677778874 33333333444558999999987654443333322    578899999886654332  2356888876


Q ss_pred             ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (357)
Q Consensus       112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~  149 (357)
                      ..      .+.+ ...++-...+.+.|.-.++..+-+.
T Consensus        78 ~~------~~d~-~n~~~~~~~r~~~~~~~iia~~~~~  108 (153)
T d1id1a_          78 LS------DNDA-DNAFVVLSAKDMSSDVKTVLAVSDS  108 (153)
T ss_dssp             CS------SCHH-HHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred             cc------ccHH-HHHHHHHHHHHhCCCCceEEEEcCH
Confidence            43      1222 2333444556677877777776554

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.64  E-value=1  Score=38.62  Aligned_cols=113  Identities=12%  Similarity=0.078  Sum_probs=72.6

Q ss_pred             CCEE-EEECCCCCh---hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh----hhhhhcC
Q 018352           32 YVTV-CDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (357)
Q Consensus        32 ~~~V-LDlGCG~G~---~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~----~~l~~~~  103 (357)
                      +.+| |==|++.|-   .+..+++.+..+|+.++.+++.++.+.+.++...  .++.++.+|+.+..-.    .......
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            4555 444766662   2234445556699999999999999888887653  3678999999874321    1222234


Q ss_pred             CcccEEEEccchhhc--cCC--HHHH-----------HHHHHHHHhcccCCcEEEEEe
Q 018352          104 NQADLVCCFQHLQMC--FET--EERA-----------RRLLQNVSSLLKPGGYFLGIT  146 (357)
Q Consensus       104 ~~FDlV~~~~~lh~~--fes--~~~~-----------~~~L~~i~~~LkpGG~fi~t~  146 (357)
                      +..|+++++.++...  +.+  .++.           -.+.+.+...|+++|.++.+.
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            689999988764321  111  2222           235677778889999877663

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.28  E-value=2.4  Score=34.07  Aligned_cols=94  Identities=11%  Similarity=-0.049  Sum_probs=59.5

Q ss_pred             CEEEEECC--CCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcccE
Q 018352           33 VTVCDLYC--GAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQADL  108 (357)
Q Consensus        33 ~~VLDlGC--G~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FDl  108 (357)
                      .+||=.|.  |-|..+..+++. +...+++++-+++......+.....        ...|....++...+.. .+..+|+
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad--------~vi~~~~~~~~~~~~~~~~~GvDv  103 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD--------AAVNYKTGNVAEQLREACPGGVDV  103 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS--------EEEETTSSCHHHHHHHHCTTCEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce--------EEeeccchhHHHHHHHHhccCceE
Confidence            78998873  457788888876 5567888888877655443332211        2334444445443322 2456999


Q ss_pred             EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      |+-.-+           ...+....++|++||+++..
T Consensus       104 v~D~vG-----------g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         104 YFDNVG-----------GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             EEESSC-----------HHHHHHHHTTEEEEEEEEEC
T ss_pred             EEecCC-----------chhHHHHhhhccccccEEEe
Confidence            975442           12467888999999999854

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=86.19  E-value=0.16  Score=41.47  Aligned_cols=100  Identities=14%  Similarity=0.126  Sum_probs=63.4

Q ss_pred             CCCEEEEECCCCCh-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352           31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (357)
Q Consensus        31 ~~~~VLDlGCG~G~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV  109 (357)
                      +..+|+=||+|.-+ .+...+..-..+|+.+|.+.+.+++.+..+...     +++...+-  ..+.+.+    ...|+|
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~-----~~~~~~~~--~~l~~~~----~~aDiv   99 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR-----VELLYSNS--AEIETAV----AEADLL   99 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG-----SEEEECCH--HHHHHHH----HTCSEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc-----ceeehhhh--hhHHHhh----ccCcEE
Confidence            46899999999743 444444555569999999999999888777543     34443322  1232222    468999


Q ss_pred             EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus       110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      ++.-.+--    ...+.-+-+++.+.+|||..++=.
T Consensus       100 I~aalipG----~~aP~lIt~~mv~~Mk~GSVIVDv  131 (168)
T d1pjca1         100 IGAVLVPG----RRAPILVPASLVEQMRTGSVIVDV  131 (168)
T ss_dssp             EECCCCTT----SSCCCCBCHHHHTTSCTTCEEEET
T ss_pred             EEeeecCC----cccCeeecHHHHhhcCCCcEEEEe
Confidence            88653221    111222345667899999887744

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=85.97  E-value=2  Score=36.58  Aligned_cols=83  Identities=8%  Similarity=-0.003  Sum_probs=57.3

Q ss_pred             CCCEEEEECCCCCh---hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh-----hhhc
Q 018352           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-----MQEK  102 (357)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~-----l~~~  102 (357)
                      ++.+||=.|+..|-   .+..+++.+. +|+.+|.+++.++.+.+.++...  .++.++.+|+.+..-...     ....
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHHh
Confidence            57789999998772   2334444454 99999999999999888877653  367889999987542211     1122


Q ss_pred             CCcccEEEEccchh
Q 018352          103 ANQADLVCCFQHLQ  116 (357)
Q Consensus       103 ~~~FDlV~~~~~lh  116 (357)
                      .+..|+++++...+
T Consensus        82 ~g~idilinnag~~   95 (258)
T d1ae1a_          82 DGKLNILVNNAGVV   95 (258)
T ss_dssp             TSCCCEEEECCCCC
T ss_pred             CCCcEEEecccccc
Confidence            36789988765544

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.90  E-value=1.5  Score=33.05  Aligned_cols=98  Identities=8%  Similarity=-0.104  Sum_probs=59.7

Q ss_pred             EEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEcc
Q 018352           35 VCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (357)
Q Consensus        35 VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~  113 (357)
                      |+=+|+  |.....+.+. ....++.+|.+++.++.++.+        .+.++.+|+.+.......  .-...+.+++..
T Consensus         3 ivI~G~--g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~--------~~~~i~Gd~~~~~~L~~a--~i~~A~~vi~~~   70 (129)
T d2fy8a1           3 VVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLRS--------GANFVHGDPTRVSDLEKA--NVRGARAVIVNL   70 (129)
T ss_dssp             EEEESC--CHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT--------TCEEEESCTTSHHHHHHT--TCTTCSEEEECC
T ss_pred             EEEECC--CHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc--------CccccccccCCHHHHHHh--hhhcCcEEEEec
Confidence            444454  5455555443 334689999999987765332        467899999876543322  235688877633


Q ss_pred             chhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352          114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (357)
Q Consensus       114 ~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~  151 (357)
                            .+ +....++-...+.+.|...++..+-+.+.
T Consensus        71 ------~~-d~~n~~~~~~~r~~~~~~~iia~~~~~~~  101 (129)
T d2fy8a1          71 ------ES-DSETIHCILGIRKIDESVRIIAEAERYEN  101 (129)
T ss_dssp             ------SS-HHHHHHHHHHHHHHCSSSCEEEECSSGGG
T ss_pred             ------cc-hhhhHHHHHHHHHHCCCceEEEEEcCHHH
Confidence                  12 22333444556678898888877666543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=85.21  E-value=2.8  Score=35.55  Aligned_cols=83  Identities=14%  Similarity=0.033  Sum_probs=56.4

Q ss_pred             CCEEEEECCCCCh---hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 018352           32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN  104 (357)
Q Consensus        32 ~~~VLDlGCG~G~---~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~  104 (357)
                      +.++|=-|++.|-   .+..+++.+ .+|+.+|.+++.++.+.+.........++.++++|+.+..-..    ......+
T Consensus         4 gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            5678888988772   334444445 4999999999999888777655443446888999998744221    1112347


Q ss_pred             cccEEEEccch
Q 018352          105 QADLVCCFQHL  115 (357)
Q Consensus       105 ~FDlV~~~~~l  115 (357)
                      ..|+++.+.++
T Consensus        83 ~iDiLVnnAG~   93 (258)
T d1iy8a_          83 RIDGFFNNAGI   93 (258)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            89998876653

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.91  E-value=3.6  Score=36.47  Aligned_cols=111  Identities=13%  Similarity=0.141  Sum_probs=62.7

Q ss_pred             CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHH-hHhc--------------------CCCceeEEEEcC
Q 018352           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDT-WENQ--------------------RKNFIAEFFEAD   89 (357)
Q Consensus        31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r-~~~~--------------------~~~~~v~f~~~D   89 (357)
                      +...|+-||||.=.-...+... ..++.-+|++-..+-..|.+ +++.                    -...+...+.+|
T Consensus        96 ~~~QVV~LGaG~DTr~~Rl~~~-~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D  174 (328)
T d1rjda_          96 EKVQVVNLGCGSDLRMLPLLQM-FPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  174 (328)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHH-CTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCccchHHHHhhcc-CCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence            4568999999975333333322 22444444443333333322 2110                    001246778889


Q ss_pred             CCCCchhhhhhhc---CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352           90 PCAENFETQMQEK---ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (357)
Q Consensus        90 ~~~~~~~~~l~~~---~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t  145 (357)
                      +.+......+...   ...--++++-.++.| + +.+...++++.+.+....+ .|+.-
T Consensus       175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Y-l-~~~~~~~li~~~~~~f~~~-~~i~Y  230 (328)
T d1rjda_         175 LNDITETTRLLDVCTKREIPTIVISECLLCY-M-HNNESQLLINTIMSKFSHG-LWISY  230 (328)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGG-S-CHHHHHHHHHHHHHHCSSE-EEEEE
T ss_pred             CCCcHhhHHHHHccCCCCCCeEEEEeeehhc-C-CHHHHHHHHHHHHHhCCCc-eEEEe
Confidence            8764433322211   233446777788999 5 6788999999999988654 45543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=84.46  E-value=1.9  Score=33.99  Aligned_cols=45  Identities=18%  Similarity=-0.006  Sum_probs=34.4

Q ss_pred             CCCCCEEEEECCCCChhHHH-HHH-hcCCeEEEEeCChHHHHHHHHH
Q 018352           29 SHPYVTVCDLYCGAGVDVDK-WET-ALIANYIGIDVATSGIGEARDT   73 (357)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~k-~~~-~~~~~v~GiDiS~~~l~~A~~r   73 (357)
                      ++++.+||=+|||.++.+.. +++ .+...|+++|.+++-++.|++.
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            56899999999998654433 333 3667899999999988887764

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=82.27  E-value=1.5  Score=39.51  Aligned_cols=60  Identities=5%  Similarity=-0.072  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh--------cCCeEEEEeCChHHHHHHHHHhHh
Q 018352           17 YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA--------LIANYIGIDVATSGIGEARDTWEN   76 (357)
Q Consensus        17 ~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~--------~~~~v~GiDiS~~~l~~A~~r~~~   76 (357)
                      .+|+...+-..-.++..+|+|+|+|+|..+.-.+..        ....|+-+++|+...+.-+++.+.
T Consensus        65 a~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~  132 (365)
T d1zkda1          65 GLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  132 (365)
T ss_dssp             HHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence            356555554433445678999999999766544332        234699999999877766666543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.90  E-value=2.6  Score=35.44  Aligned_cols=79  Identities=11%  Similarity=0.012  Sum_probs=53.5

Q ss_pred             CCCEEEEECCCCCh---hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (357)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD  107 (357)
                      .+.++|=-|++.|-   .+..+++.+ .+|+.+|.+++.++...+...      .+..+++|+.+..-.+..-..-++.|
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G-~~V~~~~r~~~~l~~~~~~~~------~~~~~~~Dv~d~~~v~~~~~~~g~iD   78 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLDSLVRECP------GIEPVCVDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcC------CCeEEEEeCCCHHHHHHHHHHhCCce
Confidence            46789999988872   333444445 499999999998887766543      35778899987543222223457899


Q ss_pred             EEEEccchh
Q 018352          108 LVCCFQHLQ  116 (357)
Q Consensus       108 lV~~~~~lh  116 (357)
                      +++.+.+..
T Consensus        79 ilVnnAg~~   87 (244)
T d1pr9a_          79 LLVNNAAVA   87 (244)
T ss_dssp             EEEECCCCC
T ss_pred             EEEeccccc
Confidence            988765443

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.97  E-value=1.6  Score=35.56  Aligned_cols=100  Identities=12%  Similarity=0.030  Sum_probs=64.1

Q ss_pred             CEEEEECCCCCh--hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-------CCCc--------------eeEEEEcC
Q 018352           33 VTVCDLYCGAGV--DVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKNF--------------IAEFFEAD   89 (357)
Q Consensus        33 ~~VLDlGCG~G~--~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-------~~~~--------------~v~f~~~D   89 (357)
                      .+|-=||+|.=|  .+..++.++ ..|+.+|.++++++.+.++.+..       +...              ++.+ ..|
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G-~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~-~~d   82 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATG-HTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-STD   82 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-ESC
T ss_pred             EEEEEECcCHHHHHHHHHHHhCC-CcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc-cch
Confidence            378889999632  333444445 49999999999999998876532       0000              0000 001


Q ss_pred             CCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352           90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (357)
Q Consensus        90 ~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd  148 (357)
                           +    ...-...|+|+-.     ..|+.+..+++++++.+.++++-+|.-.+..
T Consensus        83 -----~----~~a~~~ad~ViEa-----v~E~l~~K~~v~~~l~~~~~~~~ilasnTS~  127 (192)
T d1f0ya2          83 -----A----ASVVHSTDLVVEA-----IVENLKVKNELFKRLDKFAAEHTIFASNTSS  127 (192)
T ss_dssp             -----H----HHHTTSCSEEEEC-----CCSCHHHHHHHHHHHTTTSCTTCEEEECCSS
T ss_pred             -----h----Hhhhcccceehhh-----cccchhHHHHHHHHHhhhcccCceeeccCcc
Confidence                 1    0113457787654     3788898999999999999999776655443

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=80.05  E-value=2.5  Score=35.94  Aligned_cols=81  Identities=10%  Similarity=-0.003  Sum_probs=54.0

Q ss_pred             CCCEEEEECCCCCh---hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 018352           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (357)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~  103 (357)
                      .+.++|=-|++.|-   .+..+++.+ .+|+.+|.+++.++.+.+.+...   ..+.++.+|+.+..-..    ......
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46788889988772   223344444 58999999999998887776543   25778899998743211    111234


Q ss_pred             CcccEEEEccch
Q 018352          104 NQADLVCCFQHL  115 (357)
Q Consensus       104 ~~FDlV~~~~~l  115 (357)
                      +..|+++.+.+.
T Consensus        81 g~iD~lVnnAG~   92 (268)
T d2bgka1          81 GKLDIMFGNVGV   92 (268)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcceecccccc
Confidence            689999876653