Citrus Sinensis ID: 018354


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
MRGNEPNGHRGVRRKDHVVQENGDTDTSSGSDELDPWTAWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIAIPTIREYNSYLQDR
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
cccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHcccccEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
mrgnepnghrgvrrkdhvvqengdtdtssgsdeldpwtawaykprtiSFLLIGACFLIwasgaldpqsdsgdvvTSVKRGIWAMIAVFLTYCLLqapstvlirphpAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFlhpdlgvelpersygadcriyvhenptsrfkNVYETLFDEFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMlpnfnecwwdSIILDILICNWFGIWAGMHtvryfdgktyewvgisrqpniiGKFKrtlgqftpaqwdkdewhpllgpwRFIQVLTLCIIFLTVELNTFFLKFclwvpprnpvIIYRLILWWLIAIPTIREYNSYLQDR
mrgnepnghrgvrrkdhvvqengdtdtssgsdeldpWTAWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLhpdlgvelperSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIAIPTIREynsylqdr
MRGNEPNGHRGVRRKDHVVQENGDTDTSSGSDELDPWTAWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIAIPTIREYNSYLQDR
**********************************DPWTAWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIAIPTIREYNSY****
*****************************GSDELDPWTAWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGISR******K**RTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIAIPTIREYNSYLQD*
************RRKDHVVQ************ELDPWTAWAYKPRTISFLLIGACFLIWASGALD*********TSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIAIPTIREYNSYLQDR
****************************SGSDELDPWTAWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIAIPTIREYNSYLQDR
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MRGNEPNGHRGVRRKDHVVQENGDTDTSSGSDELDPWTAWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIAIPTIREYNSYLQDR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query357 2.2.26 [Sep-21-2011]
Q08D11 474 Phosphatidylserine syntha yes no 0.960 0.723 0.393 1e-66
E7EY42 452 Phosphatidylserine syntha yes no 0.907 0.716 0.391 2e-65
E1BYA3442 Phosphatidylserine syntha yes no 0.977 0.789 0.382 7e-65
Q9BVG9 487 Phosphatidylserine syntha yes no 0.924 0.677 0.397 9e-65
Q9Z1X2 473 Phosphatidylserine syntha yes no 0.977 0.737 0.373 2e-64
O08888 474 Phosphatidylserine syntha yes no 0.871 0.656 0.406 2e-64
B2GV22 471 Phosphatidylserine syntha yes no 0.977 0.740 0.373 3e-64
Q803C9 465 Phosphatidylserine syntha no no 0.848 0.651 0.382 1e-53
Q00576 471 Phosphatidylserine syntha no no 0.848 0.643 0.376 1e-46
Q5PQL5 473 Phosphatidylserine syntha no no 0.840 0.634 0.372 1e-46
>sp|Q08D11|PTSS2_XENTR Phosphatidylserine synthase 2 OS=Xenopus tropicalis GN=ptdss2 PE=2 SV=2 Back     alignment and function desciption
 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 137/348 (39%), Positives = 200/348 (57%), Gaps = 5/348 (1%)

Query: 10  RGVRRKDHVVQENGDTDTSSGSDELDPWT-AWAYKPRTISFLLIGACFLIWASGALDPQS 68
           RG R   +     G+  +S+ S+  D  T  + ++  T++ L I  C L + +   +   
Sbjct: 28  RGNRNLGNKFSHRGELRSSTESEVFDDGTNTFFWRAHTLTVLFILTCSLGYVTLLEETPQ 87

Query: 69  DSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLF 128
           D+     + KRGI A I VFL + + QA      RPHPA WR    ++VVY + L F+LF
Sbjct: 88  DTA---YNAKRGIIASILVFLCFGVTQAKDGPFSRPHPAYWRFWLCVSVVYELFLIFILF 144

Query: 129 QKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFG 188
           Q   D RQFMKF+ P LGV LPER YG +C IY   N T  + N+++ + D FV AH  G
Sbjct: 145 QTVHDGRQFMKFIDPKLGVPLPERDYGGNCLIYDPGNKTDPYHNLWDKM-DGFVPAHFLG 203

Query: 189 WWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMH 248
           W+ K ++IR+  +  ++S+ FE +E +  H LPNF+ECWWD  I+D+L+CN FGI+ GM 
Sbjct: 204 WYIKTLMIRDWWMCMIISVMFEFLEYSLEHQLPNFSECWWDHWIMDVLVCNGFGIYCGMK 263

Query: 249 TVRYFDGKTYEWVGISRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCII 308
           T+ +   K Y+W G+   P   GK KR   QFTP  W K EW P     R++ V  +  +
Sbjct: 264 TLEWLSMKPYKWQGLWNIPTYRGKMKRIAFQFTPYSWVKFEWKPASSLRRWLAVCGIIFV 323

Query: 309 FLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIAIPTIREYNSYLQD 356
           FL  ELNTF+LKF LW+PP + +++ RL+ +  +    +RE   ++ D
Sbjct: 324 FLLAELNTFYLKFVLWMPPEHYLVLLRLVFFVNVGGVAMREIYDFMDD 371




Catalyzes a base-exchange reaction in which the polar head group of phosphatidylethanolamine (PE) or phosphatidylcholine (PC) is replaced by L-serine. PTDSS2 is specific for phosphatatidylethanolamine and does not act on phosphatidylcholine.
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: 7EC: .EC: 8EC: .EC: 2EC: 9
>sp|E7EY42|PTSS2_DANRE Phosphatidylserine synthase 2 OS=Danio rerio GN=ptdss2 PE=3 SV=1 Back     alignment and function description
>sp|E1BYA3|PTSS2_CHICK Phosphatidylserine synthase 2 OS=Gallus gallus GN=PTDSS1 PE=3 SV=1 Back     alignment and function description
>sp|Q9BVG9|PTSS2_HUMAN Phosphatidylserine synthase 2 OS=Homo sapiens GN=PTDSS2 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z1X2|PTSS2_MOUSE Phosphatidylserine synthase 2 OS=Mus musculus GN=Ptdss2 PE=2 SV=2 Back     alignment and function description
>sp|O08888|PTSS2_CRIGR Phosphatidylserine synthase 2 OS=Cricetulus griseus GN=PTDSS2 PE=2 SV=1 Back     alignment and function description
>sp|B2GV22|PTSS2_RAT Phosphatidylserine synthase 2 OS=Rattus norvegicus GN=Ptdss2 PE=2 SV=1 Back     alignment and function description
>sp|Q803C9|PTSS1_DANRE Phosphatidylserine synthase 1 OS=Danio rerio GN=ptdss1 PE=2 SV=2 Back     alignment and function description
>sp|Q00576|PTSS1_CRIGR Phosphatidylserine synthase 1 OS=Cricetulus griseus GN=PTDSS1 PE=2 SV=1 Back     alignment and function description
>sp|Q5PQL5|PTSS1_RAT Phosphatidylserine synthase 1 OS=Rattus norvegicus GN=Ptdss1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
225424118426 PREDICTED: phosphatidylserine synthase 2 0.988 0.828 0.906 0.0
356575602426 PREDICTED: phosphatidylserine synthase 2 0.985 0.826 0.878 0.0
356536262426 PREDICTED: phosphatidylserine synthase 2 0.985 0.826 0.878 0.0
224099433422 predicted protein [Populus trichocarpa] 0.985 0.834 0.881 0.0
255570711423 phosphatidylserine synthase, putative [R 0.980 0.827 0.887 0.0
224111574423 predicted protein [Populus trichocarpa] 0.985 0.832 0.884 1e-180
449465912428 PREDICTED: phosphatidylserine synthase 2 0.988 0.824 0.850 1e-179
449493488426 PREDICTED: LOW QUALITY PROTEIN: phosphat 0.977 0.819 0.851 1e-178
449435204426 PREDICTED: phosphatidylserine synthase 2 0.977 0.819 0.851 1e-178
297734271430 unnamed protein product [Vitis vinifera] 0.988 0.820 0.836 1e-177
>gi|225424118|ref|XP_002283058.1| PREDICTED: phosphatidylserine synthase 2 [Vitis vinifera] gi|297737747|emb|CBI26948.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/354 (90%), Positives = 336/354 (94%), Gaps = 1/354 (0%)

Query: 5   EPNGHRGVRRKDHVVQENGDTDTSSGSDELDPWTAWAYKPRTISFLLIGACFLIWASGAL 64
           EPNGHR  RRKD  VQ NG+   SS  DE DPWTAWAYKPRTIS LLIGACFLIWASGAL
Sbjct: 2   EPNGHRRARRKDSAVQANGNGSLSSVGDEHDPWTAWAYKPRTISLLLIGACFLIWASGAL 61

Query: 65  DPQS-DSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVAL 123
           DP+S  SG++VTSVKRG+WAMIAVFL YCLLQAPSTVLIRPHPAIWRLVHGMAV+YLV L
Sbjct: 62  DPESRSSGNLVTSVKRGVWAMIAVFLAYCLLQAPSTVLIRPHPAIWRLVHGMAVIYLVCL 121

Query: 124 TFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVL 183
           TFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYV ENPTSRFKNVYETLFDEFV+
Sbjct: 122 TFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVPENPTSRFKNVYETLFDEFVV 181

Query: 184 AHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGI 243
           AHIFGWWGKAI+IRNQPLLW+LSIGFELMELTFRHMLPNFNECWWDSIILDIL+CNWFGI
Sbjct: 182 AHIFGWWGKAIMIRNQPLLWVLSIGFELMELTFRHMLPNFNECWWDSIILDILVCNWFGI 241

Query: 244 WAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVL 303
           WAGMHTVRYFDG+TYEWVGISRQPNIIGK KRTLGQFTPAQWDKDEWHPLLGPWRFIQVL
Sbjct: 242 WAGMHTVRYFDGRTYEWVGISRQPNIIGKVKRTLGQFTPAQWDKDEWHPLLGPWRFIQVL 301

Query: 304 TLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIAIPTIREYNSYLQDR 357
           +LCI+FLTVELNTFFLKFCLW+PPRNPVI+YRLILWWLIAIPTIREYNSYLQDR
Sbjct: 302 SLCIVFLTVELNTFFLKFCLWIPPRNPVIVYRLILWWLIAIPTIREYNSYLQDR 355




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575602|ref|XP_003555928.1| PREDICTED: phosphatidylserine synthase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356536262|ref|XP_003536658.1| PREDICTED: phosphatidylserine synthase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224099433|ref|XP_002311482.1| predicted protein [Populus trichocarpa] gi|222851302|gb|EEE88849.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255570711|ref|XP_002526310.1| phosphatidylserine synthase, putative [Ricinus communis] gi|223534391|gb|EEF36099.1| phosphatidylserine synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224111574|ref|XP_002315905.1| predicted protein [Populus trichocarpa] gi|222864945|gb|EEF02076.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449465912|ref|XP_004150671.1| PREDICTED: phosphatidylserine synthase 2-like [Cucumis sativus] gi|449519402|ref|XP_004166724.1| PREDICTED: phosphatidylserine synthase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449493488|ref|XP_004159313.1| PREDICTED: LOW QUALITY PROTEIN: phosphatidylserine synthase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449435204|ref|XP_004135385.1| PREDICTED: phosphatidylserine synthase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297734271|emb|CBI15518.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
TAIR|locus:2037788453 PSS1 "AT1G15110" [Arabidopsis 0.974 0.768 0.851 6.9e-173
DICTYBASE|DDB_G0278159487 pssA "phosphatidylserine synth 0.862 0.632 0.481 4.3e-77
UNIPROTKB|Q9BVG9 487 PTDSS2 "Phosphatidylserine syn 0.921 0.675 0.401 1.2e-65
UNIPROTKB|E1BYA3442 PTDSS1 "Phosphatidylserine syn 0.907 0.733 0.407 2e-65
UNIPROTKB|E2R5C7 482 PTDSS2 "Uncharacterized protei 0.929 0.688 0.400 3.2e-65
UNIPROTKB|O08888 474 PTDSS2 "Phosphatidylserine syn 0.907 0.683 0.404 5.2e-65
MGI|MGI:1351664 473 Ptdss2 "phosphatidylserine syn 0.907 0.684 0.401 6.7e-65
RGD|1307914 471 Ptdss2 "phosphatidylserine syn 0.907 0.687 0.401 1.1e-64
ZFIN|ZDB-GENE-040426-837 465 ptdss1 "phosphatidylserine syn 0.848 0.651 0.382 6.1e-55
ZFIN|ZDB-GENE-081031-18 464 si:ch211-153f2.6 "si:ch211-153 0.848 0.653 0.363 6.3e-53
TAIR|locus:2037788 PSS1 "AT1G15110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1680 (596.4 bits), Expect = 6.9e-173, P = 6.9e-173
 Identities = 305/358 (85%), Positives = 330/358 (92%)

Query:     5 EPNGHRGVRRKD-HVVQENG---DTDTSSGSDELDPWTAWAYKPRTISFLLIGACFLIWA 60
             EPNG+R  RRK+ H+ + NG   D +T     +LDPWTAWAYKPRTIS LLIGACFLIWA
Sbjct:     2 EPNGYRKERRKEQHLGRMNGGGGDVET-----DLDPWTAWAYKPRTISLLLIGACFLIWA 56

Query:    61 SGALDPQSD-SGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVY 119
             SGALDP S  S D+VTSVKRG+WAMIAVFL Y LLQAPSTVLIRPHPAIWRLVHGMAV+Y
Sbjct:    57 SGALDPDSTTSDDLVTSVKRGVWAMIAVFLAYSLLQAPSTVLIRPHPAIWRLVHGMAVIY 116

Query:   120 LVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFD 179
             LVALTFLLFQ+RDDARQFMKFLHPDLG+ELPE+SYGADCRIYV ++PT+RFKN+Y+T+FD
Sbjct:   117 LVALTFLLFQRRDDARQFMKFLHPDLGIELPEKSYGADCRIYVPDHPTNRFKNLYDTVFD 176

Query:   180 EFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICN 239
             EF LAHIFGWWGKAILIRNQPLLW+LSIGFEL+E+TFRHMLPNFNECWWDSI+LDILICN
Sbjct:   177 EFFLAHIFGWWGKAILIRNQPLLWVLSIGFELLEVTFRHMLPNFNECWWDSIVLDILICN 236

Query:   240 WFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRF 299
             WFGIWAGM+TVRYFDGKTYEWVGISRQPNIIGK KRTLGQFTPA WDKDEWHPL GPWRF
Sbjct:   237 WFGIWAGMYTVRYFDGKTYEWVGISRQPNIIGKVKRTLGQFTPAHWDKDEWHPLQGPWRF 296

Query:   300 IQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIAIPTIREYNSYLQDR 357
             IQVLTLCIIFLTVELNTFFLKF LW+PPRNPVI+YRLILWWLIAIPT REYNSYLQDR
Sbjct:   297 IQVLTLCIIFLTVELNTFFLKFSLWIPPRNPVILYRLILWWLIAIPTTREYNSYLQDR 354




GO:0003882 "CDP-diacylglycerol-serine O-phosphatidyltransferase activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0006659 "phosphatidylserine biosynthetic process" evidence=IEA;ISS;IMP
GO:0005634 "nucleus" evidence=IDA
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
DICTYBASE|DDB_G0278159 pssA "phosphatidylserine synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BVG9 PTDSS2 "Phosphatidylserine synthase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYA3 PTDSS1 "Phosphatidylserine synthase 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2R5C7 PTDSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O08888 PTDSS2 "Phosphatidylserine synthase 2" [Cricetulus griseus (taxid:10029)] Back     alignment and assigned GO terms
MGI|MGI:1351664 Ptdss2 "phosphatidylserine synthase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307914 Ptdss2 "phosphatidylserine synthase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-837 ptdss1 "phosphatidylserine synthase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081031-18 si:ch211-153f2.6 "si:ch211-153f2.6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.8LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00030428001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (426 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021187001
SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (331 aa)
      0.907
GSVIVG00034191001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (755 aa)
       0.899
GSVIVG00033053001
SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (1073 aa)
       0.899
GSVIVG00026323001
SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (1087 aa)
       0.899
GSVIVG00025319001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa)
       0.899
GSVIVG00024115001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (431 aa)
       0.899
GSVIVG00022270001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (507 aa)
       0.899
GSVIVG00019084001
SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (488 aa)
       0.899
GSVIVG00017959001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (464 aa)
       0.899
GSVIVG00016909001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (117 aa)
       0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
PLN02930353 PLN02930, PLN02930, CDP-diacylglycerol-serine O-ph 0.0
pfam03034278 pfam03034, PSS, Phosphatidyl serine synthase 1e-137
>gnl|CDD|178518 PLN02930, PLN02930, CDP-diacylglycerol-serine O-phosphatidyltransferase Back     alignment and domain information
 Score =  637 bits (1646), Expect = 0.0
 Identities = 288/318 (90%), Positives = 307/318 (96%), Gaps = 1/318 (0%)

Query: 41  AYKPRTISFLLIGACFLIWASGALDPQS-DSGDVVTSVKRGIWAMIAVFLTYCLLQAPST 99
           AYKP TIS LLIGACFLIWASGALDP+S  SGD+VTSVKRG+WAMIAVFL YCLLQAPST
Sbjct: 1   AYKPHTISLLLIGACFLIWASGALDPESTTSGDLVTSVKRGVWAMIAVFLAYCLLQAPST 60

Query: 100 VLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCR 159
           VLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCR
Sbjct: 61  VLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCR 120

Query: 160 IYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHM 219
           IY  E+P+SRFKNVY+TLFDEFV+AHI GWWGKAI+IRNQPLLW+LSIGFELMELTFRHM
Sbjct: 121 IYTPEHPSSRFKNVYDTLFDEFVVAHILGWWGKAIMIRNQPLLWVLSIGFELMELTFRHM 180

Query: 220 LPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQ 279
           LPNFNECWWDSI+LD+LICNWFGIWAGMHTV+YFDGKTYEWVGISRQPNIIGK KRTLGQ
Sbjct: 181 LPNFNECWWDSIVLDVLICNWFGIWAGMHTVKYFDGKTYEWVGISRQPNIIGKVKRTLGQ 240

Query: 280 FTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILW 339
           FTPAQWDKDEWHPL GPWRF+QVL LC++FLTVELNTFFLKFCLW+PPRNP+I+YRLILW
Sbjct: 241 FTPAQWDKDEWHPLQGPWRFLQVLFLCVVFLTVELNTFFLKFCLWIPPRNPLIVYRLILW 300

Query: 340 WLIAIPTIREYNSYLQDR 357
           WLIAIPTIREYNS+LQDR
Sbjct: 301 WLIAIPTIREYNSFLQDR 318


Length = 353

>gnl|CDD|145924 pfam03034, PSS, Phosphatidyl serine synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 357
KOG2735466 consensus Phosphatidylserine synthase [Lipid trans 100.0
PLN02930353 CDP-diacylglycerol-serine O-phosphatidyltransferas 100.0
PF03034280 PSS: Phosphatidyl serine synthase; InterPro: IPR00 100.0
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=6.4e-140  Score=1030.58  Aligned_cols=342  Identities=53%  Similarity=0.944  Sum_probs=322.3

Q ss_pred             CCCCCCCCCccccccccccCCCCCCCCCCCccCCcccceecchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhhhHH
Q 018354            3 GNEPNGHRGVRRKDHVVQENGDTDTSSGSDELDPWTAWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIW   82 (357)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ffykPhTit~L~~~~~~l~y~a~~~~~~~~~~~~~~n~~~Gi~   82 (357)
                      ++||++.|+.|+.....++..+.-.|..  ..|+|++|||||||||+|++++|.++|+|++.++++   ++++|+|||++
T Consensus        23 ~~e~~~~r~~~r~e~~~~~~~~~~ne~~--vdDit~dffykphTiTlL~i~~~~l~y~a~~~~~~~---~t~~N~~rGil   97 (466)
T KOG2735|consen   23 SVEPNGARKLRRDELHEKMHFRMINERV--VDDITTDFFYKPHTITLLLILICFLIYKAFTGDTEN---TTETNVKRGIL   97 (466)
T ss_pred             ccCCCCccchhhhhhhhhhccCccceee--eccchhhheecCceehHHHHHHHHHHHHHHhCCCCc---chHHHHHHHHH
Confidence            5778777777666553355554444444  449999999999999999999999999999987644   36789999999


Q ss_pred             HHHHHHHhhhhccCCCCcccCCChhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHcCCCC--CCCCcccccCCCcc
Q 018354           83 AMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLG--VELPERSYGADCRI  160 (357)
Q Consensus        83 a~i~~Fl~~~~l~~pdgpf~RPHPa~WR~V~gl~vlYll~LvFLLFq~~~daR~~l~~ldP~Lg--~~l~eksYa~nC~i  160 (357)
                      |++++||++|++|||||||+|||||+||+|||+||+|+++|+|+||||.+|+||+|+|+||+||  .++|||+||.||++
T Consensus        98 ~~i~~FL~~svlafpngpF~RPHPa~WR~vfg~SViYll~L~FlLFQ~~~d~r~~l~wldPkl~~~~~l~EkeYg~nC~~  177 (466)
T KOG2735|consen   98 AMIAVFLIISVLAFPNGPFIRPHPALWRIVFGVSVIYLLFLQFLLFQTFDDIRQFLKWLDPKLGGQIELPEKEYGVNCSI  177 (466)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHhhhHHHHhHheeeCcccCCCcccchhhhcCcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999  88999999999999


Q ss_pred             cccCCCccchhhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhccCCCcchhhhHHHHHHHHhhH
Q 018354          161 YVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNW  240 (357)
Q Consensus       161 ~tp~~p~~~~~ni~~~~~DiF~~aH~~GW~~KaliiRd~~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~  240 (357)
                      |+||       |||++ +|+|++|||+||++||++|||+++||++||+||++|++|+|+||||+||||||||||||+|||
T Consensus       178 ~spd-------ri~sh-~D~Fa~aHf~GW~mKalLIR~~~lcw~iSI~wEltE~~f~hlLPNFaECWWD~iILDVLiCNg  249 (466)
T KOG2735|consen  178 YSPD-------RIWSH-LDIFAFAHFLGWAMKALLIRHWVLCWVISIMWELTELTFRHLLPNFAECWWDSIILDVLICNG  249 (466)
T ss_pred             CCHH-------HHhhh-hhhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHheeccc
Confidence            9865       68887 699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccCccccccccccCCCcccchhhhhcccCCCccccccccCCCChhHHHHHHHHHHHHHHHhhhHHHHh
Q 018354          241 FGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLK  320 (357)
Q Consensus       241 lGI~lGm~~~~~l~~k~Y~W~g~~~i~~~~gK~kr~~~QFtP~sw~~~~W~~~~s~~R~~~v~~l~~~~ll~ELN~FfLK  320 (357)
                      +|||+||++||+|+||+|+|+|+++|||++||+||++.||||+||+++||+|.+|++|+++|+.++++||++||||||||
T Consensus       250 lGI~~Gmk~c~~L~mrty~W~sik~i~t~~GK~KR~~lQFTPasW~~~~W~p~ss~~R~~~V~~lviiwlltELNTFFlK  329 (466)
T KOG2735|consen  250 LGIWAGMKTCRWLSMRTYHWESIKNIPTTRGKMKRAALQFTPASWSKFEWHPASSLRRFAAVYTLVIIWLLTELNTFFLK  329 (466)
T ss_pred             chhhhHhHHHhhhcccceeeeeeccCcccchhHHHHhhccCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 018354          321 FCLWVPPRNPVIIYRLILWWLIAIPTIREYNSYLQDR  357 (357)
Q Consensus       321 ~~Lwipp~h~l~~~RL~l~~l~~~pa~rEyY~yi~D~  357 (357)
                      |+|||||+||++++||++|+++|+|++||||.|+||+
T Consensus       330 hvf~ipp~Hpvv~~RlIli~~i~aptiRqyy~y~tD~  366 (466)
T KOG2735|consen  330 HVFWIPPKHPVVLWRLILIALIAAPTIRQYYVYLTDK  366 (466)
T ss_pred             eeEecCCCCceeehhHHHHHhhccchHHHHHHHccCc
Confidence            9999999999999999999999999999999999995



>PLN02930 CDP-diacylglycerol-serine O-phosphatidyltransferase Back     alignment and domain information
>PF03034 PSS: Phosphatidyl serine synthase; InterPro: IPR004277 Phosphatidyl serine synthase is also known as serine exchange enzyme (2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 53/389 (13%), Positives = 105/389 (26%), Gaps = 99/389 (25%)

Query: 4   NEPNGHRGVRR-----KDHVVQENGDTDTSSGSDELD-PWTAWAYKPRTISFLLIGACFL 57
              +   G  R          QE            ++  +     K       ++   + 
Sbjct: 56  MSKDAVSGTLRLFWTLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY- 112

Query: 58  IWASGALDPQSDSGDVVT--SVKRG--IWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVH 113
                  D   +   V    +V R           L   LL+      +RP   +  L+ 
Sbjct: 113 ---IEQRDRLYNDNQVFAKYNVSRLQPYLK-----LRQALLE------LRPAKNV--LID 156

Query: 114 GMA-----VVYLVALTFLLFQKRDDARQF-MKFLH---PDLGVELPER-SYGADCRIYVH 163
           G+       V L        Q + D + F +   +   P+  +E+ ++  Y  D      
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 164 ENPTSRFKNVYETLFDEFVLAHIFGWWG--KAILI-RNQPLLWLLSI--GFEL---MELT 215
            + +S  K    ++  E  L  +         +L+  N   +        F L   + LT
Sbjct: 217 SDHSSNIKLRIHSIQAE--LRRLLKSKPYENCLLVLLN---VQNAKAWNAFNLSCKILLT 271

Query: 216 FRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYF-DGKTYE----WVGISRQ---- 266
            R              + D L        +  H        +       ++    Q    
Sbjct: 272 TR-----------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 267 ------P---NIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLT-VELNT 316
                 P   +II +  R       A W  D W   +   +   ++   +  L   E   
Sbjct: 321 EVLTTNPRRLSIIAESIRDG----LATW--DNW-KHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 317 FFLKFCL-----WVPPRNPVIIYRLILWW 340
            F +  +      +P    ++    ++W+
Sbjct: 374 MFDRLSVFPPSAHIPTI--LLS---LIWF 397


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00