Citrus Sinensis ID: 018359

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
MAYMSMGEAHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQCISCAGETRAPSLSKIVQENLHYPKTKRPKQSSSDEVGCNCEGTEMA
cccccccHHHcHHHHHHHHHHHHHHHccHHHHHHccccccccccHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHHcccccHHHHcHHcHHccHHHHHHHHHccHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHcccccEEcccccccccccccccccccc
ccEEcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccHHcHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHcccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEHHHHHHHHHHHHHHHHHccHHHcccccccccccccccc
MAYMSMGEAHRRITDYLNRfsdavssqdVVSLKQLLsfssnspsllsLADSLNVFQDANRlikqsdnyspfaditvplfRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRelasngkspeKLKAAGSFLMKVFGVLAgkgskrvgALYLTCQLFKIYFKLGTVHLCRSVIRSIETarifdfeefpkrdkvTYMYYTGRLevfnenfpaadQKLSYALINCNPQSEANIRMILKYLIPVklsigilpkdwllekynlVEYSNIVQALRRGDLRLLRHALEEHEDQciscagetrapslSKIVQenlhypktkrpkqsssdevgcncegtema
maymsmgeAHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLikqsdnyspFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADrelasngkspekLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSietarifdfeefpkrdkVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQCISCAGETRAPSLSKIVQENLhypktkrpkqsssdevgcncegtema
MAYMSMGEAHRRITDYLNRFSDAVSSQDVVSLKQllsfssnspsllsladslNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDlrllrhaleeheDQCISCAGETRAPSLSKIVQENLHYPKTKRPKQSSSDEVGCNCEGTEMA
************ITDYLNRFSDAV****VVSLKQLL********LLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAE*****************AAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQCISCAG*****************************************
********AHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLAD**NV********K*SDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERAD****************GSFLMKVFGV***KGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS**********EFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQCISCAGETRAPSLSKIVQENLHYPKTKRPKQSSS*************
********AHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQCISCAGETRAPSLSKIVQENLHYP***********************
*AYMSMGEAHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQCISCAGETRAPSLSKIVQENLHYPKTKRPKQS****V*CNC******
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MAYMSMGEAHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQCISCAGETRAPSLSKIVQENLHYPKTKRPKQSSSDEVGCNCEGTEMA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query357 2.2.26 [Sep-21-2011]
Q5JVF3399 PCI domain-containing pro yes no 0.876 0.784 0.332 2e-42
Q5FWP8399 PCI domain-containing pro N/A no 0.837 0.749 0.325 4e-41
Q2TBN6408 PCI domain-containing pro yes no 0.876 0.767 0.326 7e-39
Q8BFV2399 PCI domain-containing pro yes no 0.876 0.784 0.326 9e-39
Q5U3P0399 PCI domain-containing pro yes no 0.882 0.789 0.301 5e-35
Q9VTL1395 PCI domain-containing pro yes no 0.532 0.481 0.353 1e-29
Q54PX7430 PCI domain-containing pro yes no 0.719 0.597 0.283 5e-25
P0CR48403 Protein CSN12 homolog OS= yes no 0.761 0.674 0.280 1e-24
P0CR49403 Protein CSN12 homolog OS= N/A no 0.761 0.674 0.280 1e-24
Q95QU0413 PCI domain-containing pro yes no 0.560 0.484 0.341 4e-22
>sp|Q5JVF3|PCID2_HUMAN PCI domain-containing protein 2 OS=Homo sapiens GN=PCID2 PE=1 SV=2 Back     alignment and function desciption
 Score =  172 bits (437), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 182/334 (54%), Gaps = 21/334 (6%)

Query: 9   AHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNY 68
           AH  I  YL +  +A+ S+D  S  +L+SF    P + +    +   ++  + + +    
Sbjct: 2   AHITINQYLQQVYEAIDSRDGASCAELVSF--KHPHVANPRLQMASPEEKCQQVLEP--- 56

Query: 69  SPFADITVPLFRSLQHYRTGN--LVDAYLAFEKSANAFIQEFR-NWESAWALEALYVIAY 125
            P+ ++     R    Y  GN   ++AY        +F++ F+ + E  WAL  +Y +A 
Sbjct: 57  -PYDEMFAAHLRCT--YAVGNHDFIEAYKCQTVIVQSFLRAFQAHKEENWALPVMYAVAL 113

Query: 126 EIRVLAERADRELASNGKSP--EKLKAAGSFLMKVFGVLAG------KGSKRVGALYLTC 177
           ++RV A  AD++L   GKS   + L+ A   LM  F V A       + SK+ G L+L  
Sbjct: 114 DLRVFANNADQQLVKKGKSKVGDMLEKAAELLMSCFRVCASDTRAGIEDSKKWGMLFLVN 173

Query: 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQ 237
           QLFKIYFK+  +HLC+ +IR+I+++ + D  ++    +VTY YY GR  +F+ +F  A++
Sbjct: 174 QLFKIYFKINKLHLCKPLIRAIDSSNLKD--DYSTAQRVTYKYYVGRKAMFDSDFKQAEE 231

Query: 238 KLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDL 297
            LS+A  +C+  S+ N RMIL YL+PVK+ +G +P   LL+KY+L++++ + +A+  G+L
Sbjct: 232 YLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAEVTRAVSEGNL 291

Query: 298 RLLRHALEEHEDQCISCAGETRAPSLSKIVQENL 331
            LL  AL +HE   I C        L  I   NL
Sbjct: 292 LLLHEALAKHEAFFIRCGIFLILEKLKIITYRNL 325
Required for B-cell survival through the regulation of the expression of cell-cycle checkpoint MAD2L1 protein during B cell differentiation.
Homo sapiens (taxid: 9606)
>sp|Q5FWP8|PCID2_XENLA PCI domain-containing protein 2 OS=Xenopus laevis GN=pcid2 PE=2 SV=1 Back     alignment and function description
>sp|Q2TBN6|PCID2_BOVIN PCI domain-containing protein 2 OS=Bos taurus GN=PCID2 PE=2 SV=1 Back     alignment and function description
>sp|Q8BFV2|PCID2_MOUSE PCI domain-containing protein 2 OS=Mus musculus GN=Pcid2 PE=2 SV=1 Back     alignment and function description
>sp|Q5U3P0|PCID2_DANRE PCI domain-containing protein 2 OS=Danio rerio GN=pcid2 PE=2 SV=1 Back     alignment and function description
>sp|Q9VTL1|PCID2_DROME PCI domain-containing protein 2 homolog OS=Drosophila melanogaster GN=PCID2 PE=1 SV=2 Back     alignment and function description
>sp|Q54PX7|PCID2_DICDI PCI domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=pcid2 PE=3 SV=1 Back     alignment and function description
>sp|P0CR48|CSN12_CRYNJ Protein CSN12 homolog OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CSN12 PE=3 SV=1 Back     alignment and function description
>sp|P0CR49|CSN12_CRYNB Protein CSN12 homolog OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CSN12 PE=3 SV=1 Back     alignment and function description
>sp|Q95QU0|PCID2_CAEEL PCI domain-containing protein 2 homolog OS=Caenorhabditis elegans GN=C27F2.10 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
224088756413 predicted protein [Populus trichocarpa] 0.873 0.755 0.865 1e-149
225444936413 PREDICTED: PCI domain-containing protein 0.873 0.755 0.852 1e-149
255546087412 PCI domain-containing protein, putative 0.868 0.752 0.864 1e-148
449446588413 PREDICTED: PCI domain-containing protein 0.873 0.755 0.830 1e-146
30680717413 proteasome-like protein [Arabidopsis tha 0.868 0.750 0.806 1e-146
356561961413 PREDICTED: PCI domain-containing protein 0.868 0.750 0.845 1e-145
297832206414 hypothetical protein ARALYDRAFT_480516 [ 0.868 0.748 0.813 1e-145
356547787410 PREDICTED: PCI domain-containing protein 0.859 0.748 0.850 1e-143
148906436414 unknown [Picea sitchensis] 0.865 0.746 0.679 1e-120
115478961409 Os09g0386400 [Oryza sativa Japonica Grou 0.854 0.745 0.661 1e-118
>gi|224088756|ref|XP_002308527.1| predicted protein [Populus trichocarpa] gi|222854503|gb|EEE92050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 270/312 (86%), Positives = 287/312 (91%)

Query: 1   MAYMSMGEAHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANR 60
           MAY+SMGEAHRRIT+YLNRFSDAVS QD  SLKQLLS SS+SPSLLSLADSLNVFQDANR
Sbjct: 1   MAYLSMGEAHRRITEYLNRFSDAVSFQDGASLKQLLSVSSDSPSLLSLADSLNVFQDANR 60

Query: 61  LIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEAL 120
           LIKQSD YS F +I  P FR LQ YR GNL+DAY AFEK+ANAF+ EFRNWESAWALEAL
Sbjct: 61  LIKQSDKYSQFGEIIAPFFRCLQSYRIGNLLDAYHAFEKAANAFLPEFRNWESAWALEAL 120

Query: 121 YVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLF 180
           YVIAYEIR+LAERADRELASNGKSPEKLK AGSFLMKVFGVLAGKG KRVGALY+TCQLF
Sbjct: 121 YVIAYEIRILAERADRELASNGKSPEKLKGAGSFLMKVFGVLAGKGPKRVGALYVTCQLF 180

Query: 181 KIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLS 240
           KIYFKLGTVHLCRSVIRSIETAR FDFEEFPKRDKVTYMYYTGRLEVFNENFPAAD KLS
Sbjct: 181 KIYFKLGTVHLCRSVIRSIETARFFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADHKLS 240

Query: 241 YALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLL 300
           YAL++CNP  EANIRMILKYLIPVKLSIGILP+D LLEKY LVEYSN+VQAL+RGDLRLL
Sbjct: 241 YALMHCNPHHEANIRMILKYLIPVKLSIGILPEDQLLEKYGLVEYSNVVQALKRGDLRLL 300

Query: 301 RHALEEHEDQCI 312
           R AL+EHED+ +
Sbjct: 301 RQALQEHEDRFL 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444936|ref|XP_002282302.1| PREDICTED: PCI domain-containing protein 2 [Vitis vinifera] gi|297738675|emb|CBI27920.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546087|ref|XP_002514103.1| PCI domain-containing protein, putative [Ricinus communis] gi|223546559|gb|EEF48057.1| PCI domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449446588|ref|XP_004141053.1| PREDICTED: PCI domain-containing protein 2-like [Cucumis sativus] gi|449488021|ref|XP_004157917.1| PREDICTED: PCI domain-containing protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30680717|ref|NP_179546.2| proteasome-like protein [Arabidopsis thaliana] gi|26452802|dbj|BAC43481.1| unknown protein [Arabidopsis thaliana] gi|330251801|gb|AEC06895.1| proteasome-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356561961|ref|XP_003549244.1| PREDICTED: PCI domain-containing protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|297832206|ref|XP_002883985.1| hypothetical protein ARALYDRAFT_480516 [Arabidopsis lyrata subsp. lyrata] gi|297329825|gb|EFH60244.1| hypothetical protein ARALYDRAFT_480516 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356547787|ref|XP_003542290.1| PREDICTED: PCI domain-containing protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|148906436|gb|ABR16371.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|115478961|ref|NP_001063074.1| Os09g0386400 [Oryza sativa Japonica Group] gi|49387717|dbj|BAD26107.1| proteasome protein-like [Oryza sativa Japonica Group] gi|113631307|dbj|BAF24988.1| Os09g0386400 [Oryza sativa Japonica Group] gi|125563577|gb|EAZ08957.1| hypothetical protein OsI_31223 [Oryza sativa Indica Group] gi|215693242|dbj|BAG88624.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
TAIR|locus:2050414413 EER5 "ENHANCED ETHYLENE RESPON 0.829 0.716 0.75 3.4e-116
UNIPROTKB|Q5JVF3399 PCID2 "PCI domain-containing p 0.588 0.526 0.372 1.1e-38
MGI|MGI:2443003399 Pcid2 "PCI domain containing 2 0.588 0.526 0.367 2.2e-38
UNIPROTKB|F1NEE3403 PCID2 "Uncharacterized protein 0.588 0.521 0.365 7.3e-38
RGD|1307041400 Pcid2 "PCI domain containing 2 0.588 0.525 0.375 1.2e-37
UNIPROTKB|F1RN42405 PCID2 "Uncharacterized protein 0.588 0.518 0.349 1e-36
UNIPROTKB|F1MWG9408 PCID2 "PCI domain-containing p 0.910 0.796 0.291 1.2e-35
UNIPROTKB|Q2TBN6408 PCID2 "PCI domain-containing p 0.910 0.796 0.291 1.2e-35
ZFIN|ZDB-GENE-041114-79399 pcid2 "PCI domain containing 2 0.630 0.563 0.322 6.3e-35
FB|FBgn0036184395 PCID2 "PCI domain-containing p 0.565 0.511 0.341 1.6e-29
TAIR|locus:2050414 EER5 "ENHANCED ETHYLENE RESPONSE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
 Identities = 222/296 (75%), Positives = 249/296 (84%)

Query:     1 MAYMSMGEAHRRITDYLNRFSDAVSSQDVVSLKQXXXXXXXXXXXXXXXXXXNVFQDANR 60
             MAY+SMGEAHRRIT+YLNRF DAVS QD  +L +                  NVFQD++ 
Sbjct:     1 MAYVSMGEAHRRITEYLNRFCDAVSYQDSSTLCRLLSFSSNSPPLLSLADALNVFQDSSS 60

Query:    61 LIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEAL 120
             LI+QSD +S + +I   +FRSLQ YR GNLV+AYLAF+K ANAF+QEFRNWESAWALEAL
Sbjct:    61 LIRQSDRFSEYGEILAHVFRSLQSYRVGNLVEAYLAFDKFANAFVQEFRNWESAWALEAL 120

Query:   121 YVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLF 180
             YV+ YEIRVLAE+AD++L SNGKSPEKLKAAGS LMKVFGVLAGKG KRVGALY+TCQLF
Sbjct:   121 YVVCYEIRVLAEKADKDLTSNGKSPEKLKAAGSLLMKVFGVLAGKGPKRVGALYVTCQLF 180

Query:   181 KIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLS 240
             K YFKLGTV+LCRSVIRSIETARIFDFEEFP+RDKVTYMYYTGRLEVFNENFPAAD KLS
Sbjct:   181 KTYFKLGTVNLCRSVIRSIETARIFDFEEFPRRDKVTYMYYTGRLEVFNENFPAADTKLS 240

Query:   241 YALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGD 296
             YAL NCNP+ E NIRMILKYL+PVKLS+GI+PKD LL  YNL EY+ IVQALR+GD
Sbjct:   241 YALQNCNPKRERNIRMILKYLVPVKLSLGIIPKDELLRNYNLHEYTKIVQALRKGD 296
GO:0005739 "mitochondrion" evidence=ISM
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;IPI
GO:0048364 "root development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IMP
GO:0000303 "response to superoxide" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0008219 "cell death" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009743 "response to carbohydrate stimulus" evidence=RCA
GO:0009751 "response to salicylic acid stimulus" evidence=RCA
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
UNIPROTKB|Q5JVF3 PCID2 "PCI domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443003 Pcid2 "PCI domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEE3 PCID2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1307041 Pcid2 "PCI domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RN42 PCID2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWG9 PCID2 "PCI domain-containing protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBN6 PCID2 "PCI domain-containing protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-79 pcid2 "PCI domain containing 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0036184 PCID2 "PCI domain-containing protein 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016574001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (335 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
COG5600413 COG5600, COG5600, Transcription-associated recombi 1e-19
>gnl|CDD|227887 COG5600, COG5600, Transcription-associated recombination protein [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score = 89.1 bits (221), Expect = 1e-19
 Identities = 82/328 (25%), Positives = 124/328 (37%), Gaps = 49/328 (14%)

Query: 15  DYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYS---PF 71
           D  N   DAV+  +   L + LS +            L      +  I      +   PF
Sbjct: 2   DMANTLLDAVAHGNSSHLTKCLSQNG------REIAILGKVLTGDSKIDAKLKETIQRPF 55

Query: 72  ADI----TVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEI 127
                  T+ L + L   R     D     ++S+   +QE          E  Y  A  +
Sbjct: 56  GRNDTAVTLVLQKFLNLGR-----DKDPWSKRSSEL-LQEL---YKNLTAELSYSSAPHL 106

Query: 128 RVLAERADRELAS----------------NGKSPEK---LKAAGSFLMKVFGVL------ 162
            VL + A R L                    KS      L      L ++F  +      
Sbjct: 107 EVLVKNAVRMLGREIWNLTVVKKQLYGLLELKSELNQDNLSKISRLLTRMFNSILNDRSP 166

Query: 163 AGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYT 222
           A   SK+VG  Y+   LF+IY +LG   LC + +++ +   + D  E+ K   V + YY 
Sbjct: 167 ALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYL 226

Query: 223 GRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIG-ILPKDWLLEKYN 281
           G   + NENF  A   L+ A + C      N + IL Y IP  L +    P   LLE++ 
Sbjct: 227 GIYYLLNENFHEAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKFPPTKDLLERFK 286

Query: 282 LVE-YSNIVQALRRGDLRLLRHALEEHE 308
               YS +V+A+R G++     AL  +E
Sbjct: 287 RCSVYSPLVKAVRSGNIEDFDLALSRNE 314

Length = 413

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 357
KOG2688394 consensus Transcription-associated recombination p 100.0
COG5600413 Transcription-associated recombination protein [DN 100.0
KOG2581493 consensus 26S proteasome regulatory complex, subun 99.89
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 97.75
PF01399105 PCI: PCI domain; InterPro: IPR000717 A homology do 96.96
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 95.8
KOG2908380 consensus 26S proteasome regulatory complex, subun 95.76
KOG1463411 consensus 26S proteasome regulatory complex, subun 95.53
PF10255404 Paf67: RNA polymerase I-associated factor PAF67; I 95.37
COG5159421 RPN6 26S proteasome regulatory complex component [ 95.08
PF1337173 TPR_9: Tetratricopeptide repeat 94.41
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 92.89
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 92.88
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 92.64
TIGR02552135 LcrH_SycD type III secretion low calcium response 88.79
cd00189100 TPR Tetratricopeptide repeat domain; typically con 88.68
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 87.99
KOG2582422 consensus COP9 signalosome, subunit CSN3 [Posttran 87.44
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 87.33
PRK15359144 type III secretion system chaperone protein SscB; 86.82
cd00189100 TPR Tetratricopeptide repeat domain; typically con 86.81
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 86.77
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 84.28
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 83.6
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 83.4
PF1342844 TPR_14: Tetratricopeptide repeat 82.28
KOG2300629 consensus Uncharacterized conserved protein [Funct 82.11
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-58  Score=449.37  Aligned_cols=332  Identities=31%  Similarity=0.448  Sum_probs=290.5

Q ss_pred             HHHHHHHHHHHhcCChHHHhccccCcCCCCchhhHHhhhhhhhhHHHHhhhcCCCCChHHHHHHHHHHhhhhc-cCCHHH
Q 018359           14 TDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYR-TGNLVD   92 (357)
Q Consensus        14 ~~yl~~v~~ai~~~dg~~La~lLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~l~~~~~~~-~~~~~~   92 (357)
                      ++|++++..++...||+.++...+..+.+  ..   .....+.+.+..+++... .||++++..|.++...+. +.+...
T Consensus         1 ~~y~~~~~~~~~~~d~~~~a~~~~~~~~~--~~---~~~~~~d~~~~~l~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~s   74 (394)
T KOG2688|consen    1 NDYFSQLLSAVARLDGELLAVQLSRRDGH--VQ---TSRTVFDAEEERLQQFIG-KPFDTIVGLHLRVLLRVAYPCDAAS   74 (394)
T ss_pred             CchHHHHHHHHHhccHHHHHHhcCCCcch--hh---cchhhcccHHHHHHhccC-CCcchhHhHHHHHHhhhccCcchhh
Confidence            47999999999999999999999998877  22   222233455666666554 799999999999877754 667888


Q ss_pred             HHHHHHHHHH-HHHHHhccc-CCceehHHHHHHHHHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHHhhhCC----
Q 018359           93 AYLAFEKSAN-AFIQEFRNW-ESAWALEALYVIAYEIRVLAERADRELAS-NGKSPEKLKAAGSFLMKVFGVLAGK----  165 (357)
Q Consensus        93 af~~~~~~~~-~l~~~~~~~-~~~W~lp~L~~~~~~L~~la~~~D~~~~~-~~~~~~~le~~a~~l~~~F~~~~~D----  165 (357)
                      ||..+. +.+ ...+.++.. +++|++|+++++|.+++.+|..+|....+ +...++.+|.+|++++++|+.|++|    
T Consensus        75 a~~~~~-~~~~~~l~~~~s~~~~~w~~~~l~rv~~~l~~la~~~~~~~~~~~s~~~~~le~~s~~i~~~f~~cl~d~~~~  153 (394)
T KOG2688|consen   75 AFSQQK-LFGFLSLRAFSSGNDENWILPNLYRVCKDLRYLAINADCALLSFSSLPNQLLEAASRTISRLFSSCLSDRRAD  153 (394)
T ss_pred             hhhhHH-HHhhhhHHHHhcccccchHHHHHHHHHHHHHHHhhhhHHhhcCcccCchHHHHHHHHHHHHHHHHHhCccccc
Confidence            898887 333 455556554 79999999999999999999999988754 2344679999999999999999999    


Q ss_pred             --CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHH
Q 018359          166 --GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL  243 (357)
Q Consensus       166 --~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~  243 (357)
                        ++||+|+++++|++|+|||++++++||+|++|++++.. +..+.++++|+|+|+||+||++|++.|+.+|+.+|.+||
T Consensus       154 ~~~~kk~~~~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~~-~~~~~~~l~~~v~y~YylGr~a~~~~d~~~A~~~L~~af  232 (394)
T KOG2688|consen  154 LEESKKVAMLYIVNQLFQIYFRIEKLLLCKNLIRAFDQSG-SDISDFPLAQLVVYHYYLGRYAMFESDFLNAFLQLNEAF  232 (394)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHhhHHHhHHHHHHhhccc-cchhhcccccceeeeeeeeeehhhhhhHHHHHHHHHHHH
Confidence              38999999999999999999999999999999999873 677899999999999999999999999999999999999


Q ss_pred             HhcCcCchHHHHHHHHHHHHHHhhcCCCCChHhhcccCccccHHHHHHHhhCCHHHHHHHHHHhhHHhHhcCchhhhhhh
Q 018359          244 INCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQCISCAGETRAPSL  323 (357)
Q Consensus       244 ~~c~~~~~~n~r~IL~~LIpv~LllG~~P~~~lL~~~~l~~y~~l~~avr~Gnl~~f~~~l~~~~~~f~k~glylllerl  323 (357)
                      ++||....+|+|+|++|+||++|++|++|+..+|++|.+..|.|+++|||.||+..|+.++++||.+|+++|+|++|+++
T Consensus       233 ~~cp~~~~~n~~~iliylip~~~llg~~Pt~~lL~~~~~~~~~~lv~aVr~Gnl~~f~~al~~~E~~f~~~gi~l~l~~l  312 (394)
T KOG2688|consen  233 RLCPDLLLKNKRLILIYLIPTGLLLGRIPTKELLDFYTLDKYSPLVQAVRSGNLRLFDLALADNERFFIRSGIYLTLEKL  312 (394)
T ss_pred             HhCcHHHHhhhhhHHHHHhHHHHHhccCcchhhHhHhhHHhHHHHHHHHHhccHHHHHHHHhhhHHHHHHhccHHHhhhh
Confidence            99999999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             hHHHhHHhh---cccccCCCCC-----------------Ccccccccccc
Q 018359          324 SKIVQENLH---YPKTKRPKQS-----------------SSDEVGCNCEG  353 (357)
Q Consensus       324 r~lv~RnL~---~~~~~~~~~~-----------------~~~~~~~~~~~  353 (357)
                      |.+||||||   +.--..++++                 +.||||||+|+
T Consensus       313 ~lv~yrnL~kkv~~~~~~~~~lpls~~~~al~~~~~~~~~~deveciLa~  362 (394)
T KOG2688|consen  313 PLVVYRNLFKKVIQLWGKTSQLPLSRFLTALQFSGVTDVDLDEVECILAN  362 (394)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHh
Confidence            999999999   3332244443                 23999999987

>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
3t5x_A203 Pcid2:dss1 Structure Length = 203 5e-15
3t5v_B455 Sac3:thp1:sem1 Complex Length = 455 6e-04
>pdb|3T5X|A Chain A, Pcid2:dss1 Structure Length = 203 Back     alignment and structure 
Iteration: 1

 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 61/89 (68%)
Query: 208 EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLS 267
           +++    +VTY YY GR  +F+ +F  A++ LS+A  +C+  S+ N RMIL YL+PVK+ 
Sbjct: 6   DDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKML 65
Query: 268 IGILPKDWLLEKYNLVEYSNIVQALRRGD 296
           +G +P   LL+KY+L++++ + +A+  G+
Sbjct: 66  LGHMPTVELLKKYHLMQFAEVTRAVSEGN 94
>pdb|3T5V|B Chain B, Sac3:thp1:sem1 Complex Length = 455 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 9e-59
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 2e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Length = 455 Back     alignment and structure
 Score =  195 bits (497), Expect = 9e-59
 Identities = 61/329 (18%), Positives = 116/329 (35%), Gaps = 31/329 (9%)

Query: 15  DYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDAN--RLIKQS---DNYS 69
           D  N+  D ++  +   L   LS   N   +  L   L  F D      ++Q     N +
Sbjct: 2   DMANQLLDELAHGNFSHLTLNLSQ--NGREIAILQKQLTGFDDKQLETFVEQHPAMPNDT 59

Query: 70  PFADITVPLF---RSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYE 126
            F  +        R +  +   +  D    F +     +           +         
Sbjct: 60  RFKIMCTSFLNYARDVDPWSAWSSSDLIFEFYQCLINCLINDNAPHIEMLIPVATRETEF 119

Query: 127 IRVLAERADREL-ASNGKSPEKLKAAGSFLMKVFGVL---------AGKGSKRVGALYLT 176
           I  LA + D      + +S + L    S L ++F  +              K+   LYL 
Sbjct: 120 IINLAGKLDSFHLQLHTRSHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLV 179

Query: 177 CQLFKIYFKLGTVHLCRSVIRSIETARIF-DFEEFPKRDKVTYMYYTGRLEVFNENFPAA 235
            +L  IYF++ +  LC ++ ++ +   +   F E+    ++ Y Y  GR  + N     A
Sbjct: 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNA 239

Query: 236 DQKLSYAL------INCNPQSEANIRMILKYLIPVKLSIGILPKDWLLE----KYNLVEY 285
             + + A          N     N   IL Y+IP  L +G + K   L     +  +  +
Sbjct: 240 FVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNW 299

Query: 286 SNIVQALRRGDLRLLRHALEEHEDQCISC 314
           S + + +R G+++ +   L ++E    + 
Sbjct: 300 SVLYKHVRYGNIQGVSLWLRQNERHLCAR 328
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Length = 203 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 100.0
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 100.0
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 99.97
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 98.72
4b4t_O393 26S proteasome regulatory subunit RPN9; hydrolase, 98.33
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 97.84
4b0z_A229 RPN12, 26S proteasome regulatory subunit RPN12; pr 97.34
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 97.21
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 97.05
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 92.72
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 92.62
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 92.56
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 92.15
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 92.08
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 91.67
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 91.03
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 90.68
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 90.32
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 89.86
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 89.49
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 89.46
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 89.35
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 89.24
3q15_A378 PSP28, response regulator aspartate phosphatase H; 89.24
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 89.14
3k9i_A117 BH0479 protein; putative protein binding protein, 89.05
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 88.8
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 88.52
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 88.5
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 88.3
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 88.14
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 87.84
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 87.68
3q49_B137 STIP1 homology and U box-containing protein 1; E3 87.37
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 87.28
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 87.01
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 86.86
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 86.78
2l6j_A111 TPR repeat-containing protein associated with HSP; 86.68
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 86.42
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 86.37
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 86.28
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 86.12
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 86.02
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 85.98
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 85.71
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 85.53
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 85.1
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 85.05
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 84.82
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 84.66
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 84.63
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 84.44
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 84.32
2kat_A115 Uncharacterized protein; NESG, structure, structur 84.14
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 84.09
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 84.03
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 83.99
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 83.92
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 83.9
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 83.73
3u3w_A293 Transcriptional activator PLCR protein; ternary co 83.59
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 83.25
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 83.19
3q49_B137 STIP1 homology and U box-containing protein 1; E3 83.16
3q15_A378 PSP28, response regulator aspartate phosphatase H; 83.03
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 83.01
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 82.89
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 82.72
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 82.5
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 82.32
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 82.16
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 82.02
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 81.73
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 81.47
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 81.05
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 81.05
4i17_A228 Hypothetical protein; TPR repeats protein, structu 80.72
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 80.7
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 80.34
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 80.24
3u4t_A272 TPR repeat-containing protein; structural genomics 80.15
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 80.08
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1.8e-67  Score=531.33  Aligned_cols=315  Identities=18%  Similarity=0.212  Sum_probs=283.9

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHhccccCcCCCCc--hhhHHhhhh--hhhhHHHHhhhc---CCCCChHHHHHHHHHHh
Q 018359           10 HRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPS--LLSLADSLN--VFQDANRLIKQS---DNYSPFADITVPLFRSL   82 (357)
Q Consensus        10 m~~l~~yl~~v~~ai~~~dg~~La~lLs~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~vv~~~l~~~   82 (357)
                      |+.+++|+.+|.+      |.  ..+|+++|+.|.  +..+.+.+.  .+.++++.|++.   .+|++|.++|.+|++++
T Consensus         1 m~~~~~fl~~i~~------~~--~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~ve~~~~~~~w~~f~~~v~~yl~~~   72 (455)
T 3t5v_B            1 MDMANQLLDELAH------GN--FSHLTLNLSQNGREIAILQKQLTGFDDKQLETFVEQHPAMPNDTRFKIMCTSFLNYA   72 (455)
T ss_dssp             -CCHHHHHHHHHH------TC--CSSCCSCSSSSHHHHHHHHHHHHHSCHHHHHHHHHHSTTCCSCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHh------cc--cceEEeCCCCCchHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Confidence            5678999999998      33  999999998873  444544432  234577777764   56888999999999999


Q ss_pred             hhhccCCHHHHHHHHHHHHHHHHHHhcccCCcee---hHHHHHHHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHH
Q 018359           83 QHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWA---LEALYVIAYEIRVLAERADRELASN-GKSPEKLKAAGSFLMKV  158 (357)
Q Consensus        83 ~~~~~~~~~~af~~~~~~~~~l~~~~~~~~~~W~---lp~L~~~~~~L~~la~~~D~~~~~~-~~~~~~le~~a~~l~~~  158 (357)
                      ++++++++.++|+.+.+++++++++|.+++.+|+   +|+++.+++.++.+|.++|++.... ..+++++|+||++|+|+
T Consensus        73 rdv~~~sl~~s~dll~~~~~~l~~a~~~~~~~wi~~l~p~~~~~~~~l~~~a~~lD~~~~~~~~~~~~~le~~a~~i~k~  152 (455)
T 3t5v_B           73 RDVDPWSAWSSSDLIFEFYQCLINCLINDNAPHIEMLIPVATRETEFIINLAGKLDSFHLQLHTRSHQFLSHISSILSRL  152 (455)
T ss_dssp             HHCCTTCSSTTHHHHHHHHHHHHTTSSSTTCTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCTTHHHHHHHHHHHHH
T ss_pred             HhCCcchHHHHHHHHHHHHHHHHHHHcCCCCchHHHhHHHHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHH
Confidence            9999999999999999999999999998778998   8888889999999999999988543 34578999999999999


Q ss_pred             HHhhhCCC------C---chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccC-CCCCCCCCccceeehhhhhhhHhhh
Q 018359          159 FGVLAGKG------S---KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETAR-IFDFEEFPKRDKVTYMYYTGRLEVF  228 (357)
Q Consensus       159 F~~~~~D~------s---Kk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~-~p~~~~~~~~~~v~y~YY~Gr~~~~  228 (357)
                      |+.|++|+      +   ||+|++|++|+|||+|||+|+++||+|++|++++++ +|+++.||++|+|||+||+||++++
T Consensus       153 F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~  232 (455)
T 3t5v_B          153 FNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLL  232 (455)
T ss_dssp             HHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHH
Confidence            99999983      3   999999999999999999999999999999999875 4789999999999999999999999


Q ss_pred             ccChHHHHHHHHHHHHh-cCcC-----chHHHHHHHHHHHHHHhhcCCCCChHhhccc---Cccc-cHHHHHHHhhCCHH
Q 018359          229 NENFPAADQKLSYALIN-CNPQ-----SEANIRMILKYLIPVKLSIGILPKDWLLEKY---NLVE-YSNIVQALRRGDLR  298 (357)
Q Consensus       229 ~~~~~~A~~~L~~A~~~-c~~~-----~~~n~r~IL~~LIpv~LllG~~P~~~lL~~~---~l~~-y~~l~~avr~Gnl~  298 (357)
                      +++|.+|+++|++||++ ||++     +.+|+++||+||||++|++|++|++.+++++   .+.+ |.+|++|||+||+.
T Consensus       233 ~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~  312 (455)
T 3t5v_B          233 NSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQ  312 (455)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHH
T ss_pred             HccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHH
Confidence            99999999999999999 9987     4799999999999999999999999999994   4665 99999999999999


Q ss_pred             HHHHHHHHhhHHhHhcCc-hhhhhhhhHHHhHHhh
Q 018359          299 LLRHALEEHEDQCISCAG-ETRAPSLSKIVQENLH  332 (357)
Q Consensus       299 ~f~~~l~~~~~~f~k~gl-ylllerlr~lv~RnL~  332 (357)
                      +|++++++|+.+|+++|+ |+++||+|++|||||+
T Consensus       313 ~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLi  347 (455)
T 3t5v_B          313 GVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLI  347 (455)
T ss_dssp             HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999 9999999999999999
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 94.59
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 91.18
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 90.91
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 88.14
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 87.49
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 87.34
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 86.02
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 84.8
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 83.72
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 81.78
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 80.91
d1w3ba_ 388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 80.11
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=0.49  Score=40.82  Aligned_cols=217  Identities=12%  Similarity=0.003  Sum_probs=125.1

Q ss_pred             ChHHHHHHHHHHhhhhc-cCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 018359           70 PFADITVPLFRSLQHYR-TGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKL  148 (357)
Q Consensus        70 ~~~~vv~~~l~~~~~~~-~~~~~~af~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~L~~la~~~D~~~~~~~~~~~~l  148 (357)
                      .|++-...|.+....+. .++|.+|-+.+.+.+....+.-    ..+-      .+..+..+|....    ..    ...
T Consensus        32 ~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~----~~~~------~a~~~~~~g~~y~----~~----~~~   93 (290)
T d1qqea_          32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG----NEDE------AGNTYVEAYKCFK----SG----GNS   93 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT----CHHH------HHHHHHHHHHHHH----HT----TCH
T ss_pred             cHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC----CCHH------HHHHHHHHHHHHH----Hh----CCc
Confidence            46666666777655543 3567777777777665443321    1111      1222222332211    11    134


Q ss_pred             HHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHh-cCChhhHHHHHHH-hhccCCCCCCCCCccceeehhhhhhhHh
Q 018359          149 KAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFK-LGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLE  226 (357)
Q Consensus       149 e~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfk-l~~~~l~~nlik~-i~~~~~p~~~~~~~~~~v~y~YY~Gr~~  226 (357)
                      ++|.....++.......+ ...........+-.+|.+ +++++-+-...+. ++-..  .  .-......+.++-+|.++
T Consensus        94 ~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~--~--~~~~~~~~~~~~~la~~~  168 (290)
T d1qqea_          94 VNAVDSLENAIQIFTHRG-QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA--Q--DQSVALSNKCFIKCADLK  168 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH--H--TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHhhhcc-cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH--h--cCchhhhhhHHHHHHHHH
Confidence            455666666555444332 223333445566677754 7988888776653 32110  0  112234455677789999


Q ss_pred             hhccChHHHHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcCCCCChH-hhcccC-c-------c---ccHHHHHHH
Q 018359          227 VFNENFPAADQKLSYALINCNPQS--EANIRMILKYLIPVKLSIGILPKDW-LLEKYN-L-------V---EYSNIVQAL  292 (357)
Q Consensus       227 ~~~~~~~~A~~~L~~A~~~c~~~~--~~n~r~IL~~LIpv~LllG~~P~~~-lL~~~~-l-------~---~y~~l~~av  292 (357)
                      .-.++|.+|.+.+..+....+...  ..+...++...+-+.+..|...... .++++. +       .   ....++.|+
T Consensus       169 ~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~  248 (290)
T d1qqea_         169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV  248 (290)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH
T ss_pred             HHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHH
Confidence            999999999999999999887653  2233333333444555667765543 233331 1       1   136788999


Q ss_pred             hhCCHHHHHHHHHHhhH
Q 018359          293 RRGDLRLLRHALEEHED  309 (357)
Q Consensus       293 r~Gnl~~f~~~l~~~~~  309 (357)
                      ..||...|++++..+..
T Consensus       249 ~~~d~e~~~eai~~y~~  265 (290)
T d1qqea_         249 NEGDSEQLSEHCKEFDN  265 (290)
T ss_dssp             HTTCTTTHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHHH
Confidence            99999999999998754
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure