Citrus Sinensis ID: 018373

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
MLLGAYSWGIISDNYGRRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
ccccHHHHHEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHc
cEEEEEEEEEEEEccccHHHHEHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHccccccHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHEEEEccHcccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHEEEEEEEcHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHcccccccccHHHHHcc
mllgayswgiisdnygrrGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFyglapesprylCAKARTVDAHRILEKMAFvnqtklppgilvsdKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSklssgdnkcgskvlhadkskdnslYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVAtiyapeiyptsarttgfgvasslgkvggmVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASsllfpfetmgRELKDTVDAIES
MLLGAYSWGIISDNYGRRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMafvnqtklppgilVSDKAIKENEesnllrdthmlSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKvlhadkskdnSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASsllfpfetmgrELKDTVDAIES
MLLGAYSWGIISDNYGRRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
**LGAYSWGIISDNYGRRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDK**************HMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS***KCGSKVLHA***KDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG************
MLLGAYSWGIISDNYGRRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVS*********************************SSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD*******
MLLGAYSWGIISDNYGRRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
MLLGAYSWGIISDNYGRRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKE******LRDTHMLSMTRKI**KLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVL****SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVD**ES
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iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
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MLLGAYSWGIISDNYGRRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query357 2.2.26 [Sep-21-2011]
Q940M4500 Organic cation/carnitine yes no 0.941 0.672 0.536 8e-93
Q5R5T8548 Synaptic vesicle 2-relate yes no 0.843 0.549 0.347 4e-43
Q8N4V2548 Synaptic vesicle 2-relate yes no 0.843 0.549 0.347 4e-43
Q2XWK0548 Synaptic vesicle 2-relate N/A no 0.851 0.554 0.333 6e-42
Q1JP63548 Synaptic vesicle 2-relate yes no 0.843 0.549 0.341 8e-42
P30638520 Putative transporter ZK63 yes no 0.862 0.592 0.309 3e-40
Q9Z2I7548 Synaptic vesicle 2-relate yes no 0.837 0.545 0.342 5e-39
Q8BFT9548 Synaptic vesicle 2-relate yes no 0.843 0.549 0.330 5e-38
Q8N434492 Putative transporter SVOP no no 0.854 0.619 0.283 2e-31
Q6PDF3494 Putative transporter SVOP no no 0.854 0.617 0.284 3e-31
>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1 Back     alignment and function desciption
 Score =  340 bits (873), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 186/347 (53%), Positives = 239/347 (68%), Gaps = 11/347 (3%)

Query: 18  RGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYL 77
           RG WMV  SAFWT GTIFEASLAW+VM RL WRWLLAFSSVPS  LLLFY    ESPRYL
Sbjct: 146 RGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYL 205

Query: 78  CAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNL-LRDTHML--------- 127
             + R  +A  ILEK+A +N+T+LPPG+L S+   +  E  N+   +TH+L         
Sbjct: 206 ILQGRKAEALAILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAV 265

Query: 128 SMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKC 187
           ++++ +    K    S   L S  L++ TLLLWV+FF N F+YYG VLLT++L++  N+C
Sbjct: 266 AVSKIVLKADKEPGFSLLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRC 325

Query: 188 GSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL 247
                    S D + Y DVFIAS AE PGL++SA +VD++GRK SM  M  + CIFLLPL
Sbjct: 326 YPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPL 384

Query: 248 VFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPL 307
           + HQS  +TTVLLFG R+C++   TV  IYAPEIYPT+ RTTG GV SS+G++GG++CPL
Sbjct: 385 LSHQSPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPL 444

Query: 308 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDA 354
           VAVGLV  CH  +AV+LFEVV +++     LFPFET GR+L D++ A
Sbjct: 445 VAVGLVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDSISA 491
High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1 Back     alignment and function description
>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1 Back     alignment and function description
>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1 Back     alignment and function description
>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1 Back     alignment and function description
>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5 Back     alignment and function description
>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1 Back     alignment and function description
>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1 Back     alignment and function description
>sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2 Back     alignment and function description
>sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
224118680 492 predicted protein [Populus trichocarpa] 0.946 0.686 0.662 1e-122
224118546 493 predicted protein [Populus trichocarpa] 0.949 0.687 0.646 1e-121
255574249 497 sugar transporter, putative [Ricinus com 0.955 0.686 0.640 1e-116
255573803 498 sugar transporter, putative [Ricinus com 0.952 0.682 0.620 1e-112
383932368 482 MFS [Gossypium hirsutum] 0.938 0.695 0.633 1e-110
225443470 495 PREDICTED: synaptic vesicle 2-related pr 0.952 0.686 0.593 1e-106
357467655 499 Synaptic vesicle 2-related protein [Medi 0.949 0.679 0.570 1e-103
218195538 529 hypothetical protein OsI_17329 [Oryza sa 0.935 0.631 0.556 1e-100
222629519424 hypothetical protein OsJ_16102 [Oryza sa 0.935 0.787 0.556 1e-100
38567900 588 OSJNBa0060N03.20 [Oryza sativa Japonica 0.935 0.568 0.556 1e-100
>gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/338 (66%), Positives = 265/338 (78%)

Query: 17  RRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRY 76
            RG WMV  S FWT GTIFEA+LAW+V+ RLNWRWLLAFSS+PS A L FY + PESPRY
Sbjct: 146 HRGTWMVVFSTFWTFGTIFEAALAWIVLPRLNWRWLLAFSSLPSIAQLFFYWIVPESPRY 205

Query: 77  LCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDK 136
           L  K R  +AH ILEK+A +NQ+KLPPG+LVSD  I  +EES   + T +LS TR +   
Sbjct: 206 LSMKGRITEAHNILEKIAQLNQSKLPPGMLVSDSTIGLDEESAPSKYTPLLSSTRNLVSD 265

Query: 137 LKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADK 196
            KSGFSSF MLFS KLIRTTLLLW+LFF N FSYYG +LLTS+LSS + KC S VL ++ 
Sbjct: 266 FKSGFSSFVMLFSSKLIRTTLLLWLLFFGNAFSYYGIILLTSELSSEEGKCASTVLRSEN 325

Query: 197 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVT 256
            +D+SLY++VFI SLAELPG++LSAIIVD+ GRKLSM  MFV ACIFLLPLVFHQ A +T
Sbjct: 326 LQDDSLYINVFITSLAELPGILLSAIIVDRFGRKLSMAFMFVLACIFLLPLVFHQHATLT 385

Query: 257 TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC 316
           T LLFG RMC  GT TVA IYAPE+YPT  R TG GVA+++G++GGMVCPLVAVGLV  C
Sbjct: 386 TALLFGARMCAIGTFTVAAIYAPEVYPTVIRATGAGVANAVGRIGGMVCPLVAVGLVAGC 445

Query: 317 HLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDA 354
           HL+ A+ILFEVV V+++   LLFPFET GREL D++ A
Sbjct: 446 HLKEAIILFEVVIVISVVCVLLFPFETSGRELSDSLAA 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|225443470|ref|XP_002273636.1| PREDICTED: synaptic vesicle 2-related protein [Vitis vinifera] gi|297735684|emb|CBI18371.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357467655|ref|XP_003604112.1| Synaptic vesicle 2-related protein [Medicago truncatula] gi|355505167|gb|AES86309.1| Synaptic vesicle 2-related protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|218195538|gb|EEC77965.1| hypothetical protein OsI_17329 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|222629519|gb|EEE61651.1| hypothetical protein OsJ_16102 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|38567900|emb|CAE03655.2| OSJNBa0060N03.20 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
TAIR|locus:2089270500 NiaP "nicotinate transporter" 0.938 0.67 0.545 1.8e-101
UNIPROTKB|Q8N4V2548 SVOP "Synaptic vesicle 2-relat 0.563 0.366 0.377 2e-44
UNIPROTKB|F6XK47483 SVOP "Uncharacterized protein" 0.563 0.416 0.368 5e-44
RGD|620277548 Svop "SV2 related protein" [Ra 0.563 0.366 0.368 1.5e-43
UNIPROTKB|Q9Z2I7548 Svop "Synaptic vesicle 2-relat 0.563 0.366 0.368 1.5e-43
UNIPROTKB|F1LPX1548 Svop "Synaptic vesicle 2-relat 0.563 0.366 0.368 2e-43
UNIPROTKB|G3MZU5547 SVOP "Synaptic vesicle 2-relat 0.563 0.367 0.368 2.2e-43
UNIPROTKB|Q1JP63548 SVOP "Synaptic vesicle 2-relat 0.563 0.366 0.368 2.2e-43
UNIPROTKB|F1RGB1548 SVOP "Uncharacterized protein" 0.563 0.366 0.368 2.2e-43
UNIPROTKB|F1NIB3554 SVOP "Uncharacterized protein" 0.563 0.362 0.373 2.4e-43
TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 922 (329.6 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
 Identities = 190/348 (54%), Positives = 239/348 (68%)

Query:    18 RGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYL 77
             RG WMV  SAFWT GTIFEASLAW+VM RL WRWLLAFSSVPS  LLLFY    ESPRYL
Sbjct:   146 RGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYL 205

Query:    78 CAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNL-LRDTHMLSM------- 129
               + R  +A  ILEK+A +N+T+LPPG+L S+   +  E  N+   +TH+L         
Sbjct:   206 ILQGRKAEALAILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAV 265

Query:   130 -TRKITDKL--KSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNK 186
                KI  K   + GFS    L S  L++ TLLLWV+FF N F+YYG VLLT++L++  N+
Sbjct:   266 AVSKIVLKADKEPGFS-LLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNR 324

Query:   187 CGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP 246
             C         S D + Y DVFIAS AE PGL++SA +VD++GRK SM  M  + CIFLLP
Sbjct:   325 CYPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLP 383

Query:   247 LVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCP 306
             L+ HQS  +TTVLLFG R+C++   TV  IYAPEIYPT+ RTTG GV SS+G++GG++CP
Sbjct:   384 LLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCP 443

Query:   307 LVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDA 354
             LVAVGLV  CH  +AV+LFEVV +++     LFPFET GR+L D++ A
Sbjct:   444 LVAVGLVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDSISA 491
GO:0005215 "transporter activity" evidence=IEA
GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006810 "transport" evidence=IEA
GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0022857 "transmembrane transporter activity" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0090416 "nicotinate transporter activity" evidence=IDA
GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA
GO:2001142 "nicotinate transport" evidence=IDA
GO:2001143 "N-methylnicotinate transport" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006865 "amino acid transport" evidence=RCA
GO:0009693 "ethylene biosynthetic process" evidence=RCA
GO:0009827 "plant-type cell wall modification" evidence=RCA
GO:0009860 "pollen tube growth" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|620277 Svop "SV2 related protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Z2I7 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPX1 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIB3 SVOP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q940M4OCT7_ARATHNo assigned EC number0.53600.94110.672yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_scaffold_164000007
hypothetical protein (492 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
TIGR00898505 TIGR00898, 2A0119, cation transport protein 2e-48
TIGR00895398 TIGR00895, 2A0115, benzoate transport 6e-16
pfam00083449 pfam00083, Sugar_tr, Sugar (and other) transporter 3e-12
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 4e-11
TIGR00879481 TIGR00879, SP, MFS transporter, sugar porter (SP) 2e-10
TIGR01299742 TIGR01299, synapt_SV2, synaptic vesicle protein SV 7e-10
TIGR00887502 TIGR00887, 2A0109, phosphate:H+ symporter 2e-07
PRK11551406 PRK11551, PRK11551, putative 3-hydroxyphenylpropio 7e-07
TIGR00883394 TIGR00883, 2A0106, metabolite-proton symporter 1e-06
cd06174 352 cd06174, MFS, The Major Facilitator Superfamily (M 2e-06
pfam07690 346 pfam07690, MFS_1, Major Facilitator Superfamily 2e-06
TIGR01299742 TIGR01299, synapt_SV2, synaptic vesicle protein SV 4e-06
PRK12307426 PRK12307, PRK12307, putative sialic acid transport 2e-05
PRK10077479 PRK10077, xylE, D-xylose transporter XylE; Provisi 2e-04
PRK03893496 PRK03893, PRK03893, putative sialic acid transport 0.001
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein Back     alignment and domain information 
 Score =  170 bits (432), Expect = 2e-48
 Identities = 93/327 (28%), Positives = 156/327 (47%), Gaps = 48/327 (14%)

Query: 28  FWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAH 87
           F++ G +    +A+ +    +WRWL    S+P+F   L     PESPR+L ++ R  +A 
Sbjct: 224 FFSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEAL 280

Query: 88  RILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFML 147
           +IL+++A +N  KLP  +L                    LS+ + ++   K    SF  L
Sbjct: 281 KILQRIAKINGKKLPAEVL-------------------SLSLEKDLSSSKK--QYSFLDL 319

Query: 148 F-SRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDV 206
           F +  L +TTL L +L+F   FSYYG VL    L                    ++Y+D+
Sbjct: 320 FRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGG------------------NIYLDL 361

Query: 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVVTTVLLFGVR 264
           FI+ L ELP  +++ +++D++GR+ +M    +     + LL  V      + T L    +
Sbjct: 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGK 421

Query: 265 MCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVIL 324
             +T    +  +Y  E+YPT  R  G GV S++ +VG ++ P +    +    L L ++L
Sbjct: 422 FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV--YLGEKWLFLPLVL 479

Query: 325 FEVVFVLAIASSLLFPFETMGRELKDT 351
           F  + +LA   +L  P ET G  L +T
Sbjct: 480 FGGLALLAGILTLFLP-ETKGVPLPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport Back     alignment and domain information
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family Back     alignment and domain information
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 Back     alignment and domain information
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter Back     alignment and domain information
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 Back     alignment and domain information
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional Back     alignment and domain information
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 357
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 100.0
KOG0569485 consensus Permease of the major facilitator superf 100.0
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 100.0
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 100.0
KOG0254513 consensus Predicted transporter (major facilitator 100.0
TIGR00898505 2A0119 cation transport protein. 100.0
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 100.0
KOG0255521 consensus Synaptic vesicle transporter SVOP and re 100.0
KOG0252538 consensus Inorganic phosphate transporter [Inorgan 99.97
PRK10077479 xylE D-xylose transporter XylE; Provisional 99.96
PRK10642490 proline/glycine betaine transporter; Provisional 99.95
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 99.94
PRK09952438 shikimate transporter; Provisional 99.92
PRK10406432 alpha-ketoglutarate transporter; Provisional 99.91
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 99.88
PRK12307426 putative sialic acid transporter; Provisional 99.86
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 99.85
PRK15075434 citrate-proton symporter; Provisional 99.84
TIGR00895398 2A0115 benzoate transport. 99.82
TIGR00891405 2A0112 putative sialic acid transporter. 99.82
PRK10489417 enterobactin exporter EntS; Provisional 99.81
PRK11663434 regulatory protein UhpC; Provisional 99.81
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.77
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 99.77
PRK03893496 putative sialic acid transporter; Provisional 99.77
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.75
TIGR00893399 2A0114 d-galactonate transporter. 99.74
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 99.72
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 99.72
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 99.72
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.71
PRK05122399 major facilitator superfamily transporter; Provisi 99.7
PRK03545390 putative arabinose transporter; Provisional 99.69
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 99.69
PRK11010491 ampG muropeptide transporter; Validated 99.68
PRK09705393 cynX putative cyanate transporter; Provisional 99.68
PRK12382392 putative transporter; Provisional 99.65
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 99.64
PRK15011393 sugar efflux transporter B; Provisional 99.64
TIGR00900365 2A0121 H+ Antiporter protein. 99.63
PLN00028476 nitrate transmembrane transporter; Provisional 99.63
PRK03699394 putative transporter; Provisional 99.63
TIGR00881379 2A0104 phosphoglycerate transporter family protein 99.58
TIGR00901356 2A0125 AmpG-related permease. 99.58
PRK11902402 ampG muropeptide transporter; Reviewed 99.57
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 99.57
PRK09874408 drug efflux system protein MdtG; Provisional 99.56
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.55
PRK09528420 lacY galactoside permease; Reviewed 99.55
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.54
TIGR00897402 2A0118 polyol permease family. This family of prot 99.54
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.53
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.53
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 99.52
PRK10473392 multidrug efflux system protein MdtL; Provisional 99.52
PRK10504471 putative transporter; Provisional 99.51
PRK11043401 putative transporter; Provisional 99.49
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.48
PRK10091382 MFS transport protein AraJ; Provisional 99.48
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 99.48
PRK11195393 lysophospholipid transporter LplT; Provisional 99.48
PRK10213394 nepI ribonucleoside transporter; Reviewed 99.48
PRK15402406 multidrug efflux system translocase MdfA; Provisio 99.47
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.47
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.46
TIGR00902382 2A0127 phenyl proprionate permease family protein. 99.45
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.42
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 99.39
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 99.39
TIGR00892455 2A0113 monocarboxylate transporter 1. 99.39
PRK03633381 putative MFS family transporter protein; Provision 99.39
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.37
PRK14995495 methyl viologen resistance protein SmvA; Provision 99.36
PRK10054395 putative transporter; Provisional 99.35
PRK11652394 emrD multidrug resistance protein D; Provisional 99.34
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 99.34
KOG2533495 consensus Permease of the major facilitator superf 99.34
PRK11646400 multidrug resistance protein MdtH; Provisional 99.33
PRK10133438 L-fucose transporter; Provisional 99.33
TIGR00896355 CynX cyanate transporter. This family of proteins 99.32
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 99.31
PRK15403413 multidrug efflux system protein MdtM; Provisional 99.3
TIGR00880141 2_A_01_02 Multidrug resistance protein. 99.3
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.25
TIGR01299 742 synapt_SV2 synaptic vesicle protein SV2. This mode 99.25
PLN00028 476 nitrate transmembrane transporter; Provisional 99.25
TIGR00710 385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.24
TIGR02332 412 HpaX 4-hydroxyphenylacetate permease. This protein 99.23
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 99.23
TIGR00895 398 2A0115 benzoate transport. 99.23
PRK10213 394 nepI ribonucleoside transporter; Reviewed 99.2
PRK11551 406 putative 3-hydroxyphenylpropionic transporter MhpT 99.2
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 99.18
PRK10473 392 multidrug efflux system protein MdtL; Provisional 99.18
PRK15402 406 multidrug efflux system translocase MdfA; Provisio 99.17
PRK09669444 putative symporter YagG; Provisional 99.16
PRK03893 496 putative sialic acid transporter; Provisional 99.16
PRK10504 471 putative transporter; Provisional 99.15
PRK15462 493 dipeptide/tripeptide permease D; Provisional 99.15
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 99.15
PRK15403 413 multidrug efflux system protein MdtM; Provisional 99.14
TIGR00887 502 2A0109 phosphate:H+ symporter. This model represen 99.13
PRK11663 434 regulatory protein UhpC; Provisional 99.13
PRK10054 395 putative transporter; Provisional 99.13
TIGR00711 485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.12
PRK11273 452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.11
KOG2532466 consensus Permease of the major facilitator superf 99.11
TIGR00893 399 2A0114 d-galactonate transporter. 99.11
PF07690 352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.11
TIGR00891 405 2A0112 putative sialic acid transporter. 99.11
PRK12307 426 putative sialic acid transporter; Provisional 99.11
PRK03545 390 putative arabinose transporter; Provisional 99.1
PRK03699 394 putative transporter; Provisional 99.09
TIGR00788468 fbt folate/biopterin transporter. The only functio 99.08
PRK11102 377 bicyclomycin/multidrug efflux system; Provisional 99.07
PRK10429473 melibiose:sodium symporter; Provisional 99.06
TIGR00900 365 2A0121 H+ Antiporter protein. 99.04
PRK10091 382 MFS transport protein AraJ; Provisional 99.04
PRK14995 495 methyl viologen resistance protein SmvA; Provision 99.03
PRK11652 394 emrD multidrug resistance protein D; Provisional 99.01
TIGR01272310 gluP glucose/galactose transporter. Disruption of 99.01
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 99.01
TIGR00881 379 2A0104 phosphoglycerate transporter family protein 98.99
TIGR00712 438 glpT glycerol-3-phosphate transporter. This model 98.99
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 98.98
TIGR00886 366 2A0108 nitrite extrusion protein (nitrite facilita 98.98
PRK09874 408 drug efflux system protein MdtG; Provisional 98.96
TIGR00903 368 2A0129 major facilitator 4 family protein. This fa 98.96
PRK10642 490 proline/glycine betaine transporter; Provisional 98.96
PRK11646 400 multidrug resistance protein MdtH; Provisional 98.95
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 98.94
PRK11043 401 putative transporter; Provisional 98.93
COG2270438 Permeases of the major facilitator superfamily [Ge 98.93
PRK15034 462 nitrate/nitrite transport protein NarU; Provisiona 98.93
PRK15075 434 citrate-proton symporter; Provisional 98.93
PF13347428 MFS_2: MFS/sugar transport protein 98.92
TIGR00924 475 yjdL_sub1_fam amino acid/peptide transporter (Pept 98.92
cd06174 352 MFS The Major Facilitator Superfamily (MFS) is a l 98.92
TIGR00898 505 2A0119 cation transport protein. 98.91
TIGR00890 377 2A0111 Oxalate/Formate Antiporter. 98.89
TIGR00879 481 SP MFS transporter, sugar porter (SP) family. This 98.89
KOG0255 521 consensus Synaptic vesicle transporter SVOP and re 98.89
PRK10207 489 dipeptide/tripeptide permease B; Provisional 98.88
PRK11462460 putative transporter; Provisional 98.88
TIGR00894 465 2A0114euk Na(+)-dependent inorganic phosphate cotr 98.87
PRK09584 500 tppB putative tripeptide transporter permease; Rev 98.87
KOG1330493 consensus Sugar transporter/spinster transmembrane 98.87
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 98.86
PRK10077 479 xylE D-xylose transporter XylE; Provisional 98.84
PRK10406 432 alpha-ketoglutarate transporter; Provisional 98.84
COG0738422 FucP Fucose permease [Carbohydrate transport and m 98.84
PRK11195 393 lysophospholipid transporter LplT; Provisional 98.82
COG2271 448 UhpC Sugar phosphate permease [Carbohydrate transp 98.8
PRK09584500 tppB putative tripeptide transporter permease; Rev 98.77
COG2814 394 AraJ Arabinose efflux permease [Carbohydrate trans 98.77
TIGR00892 455 2A0113 monocarboxylate transporter 1. 98.76
PRK09556 467 uhpT sugar phosphate antiporter; Reviewed 98.76
PRK10489 417 enterobactin exporter EntS; Provisional 98.75
COG2223 417 NarK Nitrate/nitrite transporter [Inorganic ion tr 98.75
PRK09848448 glucuronide transporter; Provisional 98.74
PRK05122 399 major facilitator superfamily transporter; Provisi 98.74
COG2807395 CynX Cyanate permease [Inorganic ion transport and 98.72
PRK03633 381 putative MFS family transporter protein; Provision 98.71
PF06609599 TRI12: Fungal trichothecene efflux pump (TRI12); I 98.71
TIGR00897 402 2A0118 polyol permease family. This family of prot 98.7
COG2211467 MelB Na+/melibiose symporter and related transport 98.69
PRK09705 393 cynX putative cyanate transporter; Provisional 98.68
TIGR00899 375 2A0120 sugar efflux transporter. This family of pr 98.68
PRK09952 438 shikimate transporter; Provisional 98.68
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 98.65
PF06609 599 TRI12: Fungal trichothecene efflux pump (TRI12); I 98.65
TIGR00885 410 fucP L-fucose:H+ symporter permease. This family d 98.64
PRK10207489 dipeptide/tripeptide permease B; Provisional 98.62
PRK11010 491 ampG muropeptide transporter; Validated 98.62
PRK12382 392 putative transporter; Provisional 98.62
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 98.62
PTZ00207591 hypothetical protein; Provisional 98.6
PTZ00207 591 hypothetical protein; Provisional 98.6
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 98.58
KOG0254 513 consensus Predicted transporter (major facilitator 98.57
KOG0569 485 consensus Permease of the major facilitator superf 98.57
PRK10133 438 L-fucose transporter; Provisional 98.52
KOG3764 464 consensus Vesicular amine transporter [Intracellul 98.5
KOG2615 451 consensus Permease of the major facilitator superf 98.5
TIGR00883 394 2A0106 metabolite-proton symporter. This model rep 98.49
TIGR00901 356 2A0125 AmpG-related permease. 98.47
PRK15011 393 sugar efflux transporter B; Provisional 98.44
KOG2615451 consensus Permease of the major facilitator superf 98.37
KOG1330 493 consensus Sugar transporter/spinster transmembrane 98.37
TIGR00896 355 CynX cyanate transporter. This family of proteins 98.35
TIGR01301 477 GPH_sucrose GPH family sucrose/H+ symporter. This 98.34
PRK09528 420 lacY galactoside permease; Reviewed 98.34
PRK11902 402 ampG muropeptide transporter; Reviewed 98.3
TIGR00805 633 oat sodium-independent organic anion transporter. 98.22
TIGR00806 511 rfc RFC reduced folate carrier. Proteins of the RF 98.17
TIGR00882 396 2A0105 oligosaccharide:H+ symporter. 98.17
PF00083 451 Sugar_tr: Sugar (and other) transporter; InterPro: 98.03
KOG2532 466 consensus Permease of the major facilitator superf 98.01
TIGR00792 437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 97.96
KOG2816 463 consensus Predicted transporter ADD1 (major facili 97.96
COG3104 498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 97.92
KOG2504 509 consensus Monocarboxylate transporter [Carbohydrat 97.88
KOG0252 538 consensus Inorganic phosphate transporter [Inorgan 97.85
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 97.8
TIGR02718 390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 97.79
TIGR00902 382 2A0127 phenyl proprionate permease family protein. 97.76
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 97.75
COG0738 422 FucP Fucose permease [Carbohydrate transport and m 97.72
PRK15462493 dipeptide/tripeptide permease D; Provisional 97.71
PRK11128 382 putative 3-phenylpropionic acid transporter; Provi 97.7
TIGR00805633 oat sodium-independent organic anion transporter. 97.68
TIGR00889 418 2A0110 nucleoside transporter. This family of prot 97.59
PRK09669 444 putative symporter YagG; Provisional 97.59
TIGR00806511 rfc RFC reduced folate carrier. Proteins of the RF 97.53
PF11700 477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 97.52
TIGR00788 468 fbt folate/biopterin transporter. The only functio 97.49
KOG3764464 consensus Vesicular amine transporter [Intracellul 97.44
KOG2533 495 consensus Permease of the major facilitator superf 97.44
PRK10429 473 melibiose:sodium symporter; Provisional 97.43
KOG2563480 consensus Permease of the major facilitator superf 97.42
KOG2816463 consensus Predicted transporter ADD1 (major facili 97.39
PRK11462 460 putative transporter; Provisional 97.39
PF13347 428 MFS_2: MFS/sugar transport protein 97.3
KOG0253 528 consensus Synaptic vesicle transporter SV2 (major 97.28
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 97.07
TIGR00880141 2_A_01_02 Multidrug resistance protein. 97.01
PF05631 354 DUF791: Protein of unknown function (DUF791); Inte 96.98
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 96.74
KOG3762618 consensus Predicted transporter [General function 96.67
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 96.44
PF03092 433 BT1: BT1 family; InterPro: IPR004324 Members of th 96.29
PF01306 412 LacY_symp: LacY proton/sugar symporter; InterPro: 96.28
COG2211 467 MelB Na+/melibiose symporter and related transport 96.22
PF01770412 Folate_carrier: Reduced folate carrier; InterPro: 96.2
KOG2563 480 consensus Permease of the major facilitator superf 96.14
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 95.89
TIGR00769 472 AAA ADP/ATP carrier protein family. These proteins 95.59
PRK09848 448 glucuronide transporter; Provisional 95.52
PF03825 400 Nuc_H_symport: Nucleoside H+ symporter 95.38
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 94.97
COG0477 338 ProP Permeases of the major facilitator superfamil 94.43
TIGR01272 310 gluP glucose/galactose transporter. Disruption of 92.78
KOG2325 488 consensus Predicted transporter/transmembrane prot 91.91
PF05631354 DUF791: Protein of unknown function (DUF791); Inte 90.43
KOG2325488 consensus Predicted transporter/transmembrane prot 90.07
PF03209 403 PUCC: PUCC protein; InterPro: IPR004896 This prote 90.01
PF01733309 Nucleoside_tran: Nucleoside transporter; InterPro: 89.84
KOG3626735 consensus Organic anion transporter [Secondary met 89.31
PF1283277 MFS_1_like: MFS_1 like family 88.79
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 88.61
COG2270 438 Permeases of the major facilitator superfamily [Ge 88.32
COG2807 395 CynX Cyanate permease [Inorganic ion transport and 85.62
TIGR00769472 AAA ADP/ATP carrier protein family. These proteins 82.8
COG3104498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 81.25
PF03219 491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 81.25
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=7.8e-50  Score=349.42  Aligned_cols=337  Identities=39%  Similarity=0.648  Sum_probs=271.0

Q ss_pred             Cccccchhhhhhcccccc--------------------------------------------------------hhHHHH
Q 018373            1 MLLGAYSWGIISDNYGRR--------------------------------------------------------GRWMVA   24 (357)
Q Consensus         1 ~~~ga~~~g~~~d~~grr--------------------------------------------------------g~~~~~   24 (357)
                      |++||..||.++|+.|||                                                        +.++.+
T Consensus       126 mllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~  205 (528)
T KOG0253|consen  126 MLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVM  205 (528)
T ss_pred             hhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhH
Confidence            689999999999999999                                                        444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHHHHcCCCCCCC
Q 018373           25 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG  104 (357)
Q Consensus        25 ~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~~~~~~~~~  104 (357)
                      . .+|.+|+++++.++|..+...|||+......+|..+.....+++||||||++.|||.+||.+.|+|+++.|+++.|..
T Consensus       206 ~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplg  284 (528)
T KOG0253|consen  206 S-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLG  284 (528)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcc
Confidence            5 999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 018373          105 ILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGD  184 (357)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~  184 (357)
                      ++.....++.+++..+..        +...+.+++.......+++++.+|+++.+|.+||++.+.||+..+....+.+..
T Consensus       285 vl~~s~~~~~e~e~~~~~--------~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsg  356 (528)
T KOG0253|consen  285 VLESSAIDRQEQEESDLD--------DSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSG  356 (528)
T ss_pred             eeeeehhhhhhhhhhchh--------hhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            765433222222211100        001111222334567789999999999999999999999999988776654433


Q ss_pred             CCCC------cccccC---CCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHH
Q 018373          185 NKCG------SKVLHA---DKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVV  255 (357)
Q Consensus       185 ~~~~------~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~  255 (357)
                      .-|+      ..+...   -...+..-|-..+++.+.+++|.++.++++||+|||+.+..+.+.++++.+.+........
T Consensus       357 d~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~  436 (528)
T KOG0253|consen  357 DACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNA  436 (528)
T ss_pred             CccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcch
Confidence            3232      111110   0111122367788899999999999999999999999999999999999888765433333


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Q 018373          256 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIAS  335 (357)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  335 (357)
                      ...+.|...+++.+.+...|+|++|+|||.+|++|.|.|..++|+++++.|+++  +....+.+.+..+|+++++++.++
T Consensus       437 ~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIa  514 (528)
T KOG0253|consen  437 YTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIA  514 (528)
T ss_pred             hHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHH
Confidence            445667777888899999999999999999999999999999999999999988  455556678899999999999999


Q ss_pred             HhhccccccCcch
Q 018373          336 SLLFPFETMGREL  348 (357)
Q Consensus       336 ~~~~~pet~~~~l  348 (357)
                      +-+++-|||||++
T Consensus       515 vcffPiEtkGR~l  527 (528)
T KOG0253|consen  515 VCFFPIETKGRSL  527 (528)
T ss_pred             heeeeeccCCCCC
Confidence            9999999999986

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
4gby_A491 The Structure Of The Mfs (Major Facilitator Superfa 7e-04
>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 Back     alignment and structure 
Iteration: 1

 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 100/255 (39%), Gaps = 49/255 (19%)
Query: 48  NWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILV 107
            WR++ A   +P+   L+     PESPR+L ++ +   A  IL K+          G  +
Sbjct: 198 GWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM---------GNTL 248
Query: 108 SDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVL--FFA 165
           + +A++E +        H L   RK   +L        ++F   +I   ++L +   F  
Sbjct: 249 ATQAVQEIK--------HSLDHGRKTGGRL--------LMFGVGVIVIGVMLSIFQQFVG 292
Query: 166 -NVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIV 224
            NV  YY   +              K L A  S D +L +   I  +  L   +L+ + V
Sbjct: 293 INVVLYYAPEVF-------------KTLGA--STDIAL-LQTIIVGVINLTFTVLAIMTV 336
Query: 225 DKIGRKLSMVLMFVSACI--FLLPLVFHQSA---VVTTVLLFGVRMCVTGTITVATIYAP 279
           DK GRK   ++  +   I  F L   F+  A   V    +LF V         V  +   
Sbjct: 337 DKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS 396
Query: 280 EIYPTSARTTGFGVA 294
           EI+P + R     +A
Sbjct: 397 EIFPNAIRGKALAIA 411

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 100.0
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 99.82
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 99.76
2cfq_A417 Lactose permease; transport, transport mechanism, 99.75
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 99.69
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 99.52
1pw4_A 451 Glycerol-3-phosphate transporter; transmembrane, i 99.4
2xut_A524 Proton/peptide symporter family protein; transport 99.32
3o7q_A 438 L-fucose-proton symporter; transporter, multi-PASS 99.29
4aps_A 491 DI-OR tripeptide H+ symporter; transport protein, 99.2
2gfp_A 375 EMRD, multidrug resistance protein D; membrane pro 99.14
2xut_A 524 Proton/peptide symporter family protein; transport 99.09
4gc0_A 491 D-xylose-proton symporter; MFS, transport protein; 98.81
2cfq_A 417 Lactose permease; transport, transport mechanism, 97.73
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
Probab=100.00  E-value=9.4e-37  Score=292.78  Aligned_cols=296  Identities=17%  Similarity=0.222  Sum_probs=186.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHh--------cCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHH
Q 018373           19 GRWMVALSAFWTAGTIFEASLAWVVM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRIL   90 (357)
Q Consensus        19 g~~~~~~~~~~~~G~l~~~~i~~~~~--------~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l   90 (357)
                      |+..++.+.++..|.+++..+++...        ..+.||+++.++.+|+++.++.++++|||||||..|+|.||+++.+
T Consensus       161 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l  240 (491)
T 4gc0_A          161 GKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL  240 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhH
Confidence            44445555666666666665554432        2357999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHH
Q 018373           91 EKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSY  170 (357)
Q Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  170 (357)
                      +|.++.+..           +++..+.+..           ..  .++ +......++..+  +..+......+.+...+
T Consensus       241 ~~~~~~~~~-----------~~~~~~~~~~-----------~~--~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  293 (491)
T 4gc0_A          241 RKIMGNTLA-----------TQAVQEIKHS-----------LD--HGR-KTGGRLLMFGVG--VIVIGVMLSIFQQFVGI  293 (491)
T ss_dssp             HHHHHHHHH-----------HHHHHHHHHH-----------HH--HHH-HHTTHHHHSCCT--HHHHHHHHHHHHHHTCH
T ss_pred             HHhcCCchh-----------HHHHHHHHHH-----------HH--hhh-hhhhHHHHhccc--HHHHHHHHHHHHHHhhh
Confidence            988764210           0000000000           00  000 000111122211  11111222222222222


Q ss_pred             HHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-
Q 018373          171 YGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-  249 (357)
Q Consensus       171 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~-  249 (357)
                      +.+..+.+.+....           ............+.++..+++.+++++++||+|||+.++.+..++.+.++.+.. 
T Consensus       294 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~  362 (491)
T 4gc0_A          294 NVVLYYAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA  362 (491)
T ss_dssp             HHHHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHhcchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence            33333333322110           111122233445667888999999999999999999998887776665554432 


Q ss_pred             --hh-hhHHHHHHH-HHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhh------cchh
Q 018373          250 --HQ-SAVVTTVLL-FGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS------CHLR  319 (357)
Q Consensus       250 --~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~------~~~~  319 (357)
                        .. ......... +....+..+..++.|.+.+|+||+++|+++.|++++++|+++++++++++.+.+.      .+..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~  442 (491)
T 4gc0_A          363 FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNG  442 (491)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTC
T ss_pred             HhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence              11 122211211 1122233344568899999999999999999999999999999998887765432      2234


Q ss_pred             hHHHHHHHHHHHHHHHHhhccccccCcchhhhH
Q 018373          320 LAVILFEVVFVLAIASSLLFPFETMGRELKDTV  352 (357)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e~~  352 (357)
                      .++++++++++++.+++++++||||||++||+-
T Consensus       443 ~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~  475 (491)
T 4gc0_A          443 FSYWIYGCMGVLAALFMWKFVPETKGKTLEELE  475 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence            567889999999999999999999999999853
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 357
d1pw4a_447 f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es 2e-06
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 35/373 (9%), Positives = 89/373 (23%), Gaps = 28/373 (7%)

Query: 1   MLLGAYSWGIISDNYGRRGRWMVALSAFWTAGTI-----------------------FEA 37
                +  G +SD    R  ++ A      A  +                       +  
Sbjct: 72  YGFSKFIMGSVSDRSNPR-VFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQ 130

Query: 38  SLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVN 97
            + W    R    W          ++             L         +     +    
Sbjct: 131 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 190

Query: 98  QTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTL 157
              +   +          +   L       +      ++      +   +F + ++   L
Sbjct: 191 FCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKL 250

Query: 158 LLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGL 217
           L ++             +L    +         +  +  +     Y  +    L      
Sbjct: 251 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM-- 308

Query: 218 ILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIY 277
               +     G      +  V+    +  +    +  V  + +  +   + G + +  ++
Sbjct: 309 -SDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH 367

Query: 278 APEIYPTSARTTGFGVASSLGKVGGMVC-PLVAVGLVTSCHLRLAVILFEVVFVLAIASS 336
           A E+ P  A  T  G     G +GG V    +    V         ++     +LA+   
Sbjct: 368 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 427

Query: 337 LLFPFETMGRELK 349
           ++       R  +
Sbjct: 428 IVVMIGEKRRHEQ 440

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 99.82
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.8
d1pw4a_ 447 Glycerol-3-phosphate transporter {Escherichia coli 99.27
d1pv7a_ 417 Lactose permease {Escherichia coli [TaxId: 562]} 98.41
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=3.5e-19  Score=165.36  Aligned_cols=150  Identities=15%  Similarity=0.166  Sum_probs=97.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHH---HHHHHHh--hhhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 018373          206 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACI---FLLPLVF--HQSAVVTTVLLFGVRMCVTGTITVATIYAPE  280 (357)
Q Consensus       206 ~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  280 (357)
                      ..+..+..+++.++++++.||++||............   .......  ..+........+...+...+..+..+.+.+|
T Consensus       291 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  370 (447)
T d1pw4a_         291 YFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE  370 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             hhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677889999999999999987654333222221   1111111  1222222223333333444555677889999


Q ss_pred             cccCcchhhHHHHHHHHHHHH-HhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCcchhhhHhhhh
Q 018373          281 IYPTSARTTGFGVASSLGKVG-GMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIE  356 (357)
Q Consensus       281 lfPt~~R~~~~~~~~~~~~l~-~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e~~~~~~  356 (357)
                      .+|++.|+++.|+.+.+++++ .+.+|.+...+.+..+....+++++++++++.++.+++.+ .+.|..||..+|++
T Consensus       371 ~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~e~~  446 (447)
T d1pw4a_         371 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI-GEKRRHEQLLQELV  446 (447)
T ss_dssp             TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHGGGGGSC
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHhCC
Confidence            999999999999999999885 4667888888888777666667777776766666665543 34455577777754
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure