Citrus Sinensis ID: 018379

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
MAETSSSPAQVELASKTVQELITSGKELPESYIYKGSDARSLDASLPLMDIPIIDIGLLTSPSSSSTQELEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRKDGSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVFCIPNPDREIEPVNGVVNEARPRLYKKVKDYVSLYFEYYQRGRRPIEAAII
cccccccccccccccccHHHHHHcccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHccccHHHHHHHHccccccEEccccccccccccccccEEEEcEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccEEEEEEcccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEccEEEEEEcccccccccEEEccccccEEEEEEEEccccccEEEccccccccccccccccHHHHHHHHHHHHHccccccccccc
cccccccccccccccHHHHHHHHccccccHHcEcccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHcccHHHHHEcEHHHcEccEEEccccccccccccccEEEEEEEEcHHHccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccHHHHcEEEEEEEEEcccccccccccEEEEcccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEcccccEEcccHHHcccccccccccHHHHHHHHHHHcHcccccHHHHcc
maetssspaqVELASKTVQELITSgkelpesyiykgsdarsldaslplmdipiidiglltspsssstQELEKLRSALSFWGCFQainyhgiepefldkmgevgkqffdfppetkhkysrkdgstegygsdiiiaeeqtldwtdrlflttspkdqrqlkfwpeipeSFRETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARfnfyppcprpdlvigvkphadaSAFTYLLQDKQVEGlqflkdnqwyrvplnpealvinagdyaeimsngifkspvhravtnsERKRMSLAVfcipnpdreiepvngvvnearpRLYKKVKDYVSLYFEYYQRGRRPIEAAII
maetssspaqveLASKTVQELITsgkelpesyiyKGSDARSLDASLPLMDIPIIDIGLLTSPSSSSTQELEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFdfppetkhkysrkdgstegyGSDIIIAEEQTLDWTDRLFLTtspkdqrqlkfwpeipeSFRETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVFcipnpdreiepvngvvnearprlykKVKDYVSLYFeyyqrgrrpieaaii
MAETSSSPAQVELASKTVQELITSGKELPESYIYKGSDARSLDASLPLMDIPIIDIGLLTSPSSSSTQELEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRKDGSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVFCIPNPDREIEPVNGVVNEARPRLYKKVKDYVSLYFEYYQRGRRPIEAAII
*******************************YIYKG****SLDASLPLMDIPIIDIGLL****************ALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDF****************GYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVFCIPNPDREIEPVNGVVNEARPRLYKKVKDYVSLYFEYYQRG*********
*************************KELPESYIYKGS**********LMDIPIIDIGLLTSP****TQELEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDFPPETKHK**RK*GSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVFCIPNPDREIEPVNGVVNEARPRLYKKVKDYVSLYFEYYQRGRRPIEAAII
************LASKTVQELITSGKELPESYIYKGSDARSLDASLPLMDIPIIDIGLLTSP**********LRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRKDGSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVFCIPNPDREIEPVNGVVNEARPRLYKKVKDYVSLYFEYYQRGRRPIEAAII
*************ASKTVQEL**SGKELPESYIYKGSDARSLDASLPLMDIPIIDIGLLTSPSSSSTQELEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRKDGSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVFCIPNPDREIEPVNGVVNEARPRLYKKVKDYVSLYFEYYQR*RRPI*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAETSSSPAQVELASKTVQELITSGKELPESYIYKGSDARSLDASLPLMDIPIIDIGLLTSPSSSSTQELEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRKDGSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLHEYTTExxxxxxxxxxxxxxxxxxxxxCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVFCIPNPDREIEPVNGVVNEARPRLYKKVKDYVSLYFEYYQRGRRPIEAAII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query357 2.2.26 [Sep-21-2011]
D4N501364 Probable 2-oxoglutarate/F N/A no 0.932 0.914 0.351 1e-58
Q39224358 Protein SRG1 OS=Arabidops no no 0.946 0.944 0.349 6e-57
D4N502360 Codeine O-demethylase OS= N/A no 0.887 0.880 0.380 1e-56
D4N500364 Thebaine 6-O-demethylase N/A no 0.829 0.813 0.372 2e-53
Q9M547334 Flavonol synthase/flavano N/A no 0.784 0.838 0.4 8e-53
Q7XZQ6337 Flavonol synthase/flavano N/A no 0.792 0.839 0.373 1e-49
P51091357 Leucoanthocyanidin dioxyg N/A no 0.781 0.781 0.357 1e-48
Q41452349 Flavonol synthase/flavano N/A no 0.789 0.808 0.358 2e-48
A2A1A0352 S-norcoclaurine synthase N/A no 0.851 0.863 0.378 7e-48
Q07512348 Flavonol synthase/flavano N/A no 0.792 0.813 0.368 1e-47
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function desciption
 Score =  227 bits (578), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 194/347 (55%), Gaps = 14/347 (4%)

Query: 6   SSPAQVELASKTVQELITSGKELPESYIYKGSDARSLDASLPLMD----IPIIDI-GLLT 60
           S P+  ELA  T+        E+P  YI    + + L     ++D    +P+IDI  L++
Sbjct: 14  SIPSVQELAKLTL-------AEIPSRYICTVENLQ-LPVGASVIDDHETVPVIDIENLIS 65

Query: 61  SPSSSSTQELEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRK 120
           S   +   EL++L SA   WG FQ +N HG++   +D +    + FF+     K KY +K
Sbjct: 66  SEPVTEKLELDRLHSACKEWGFFQVVN-HGVDTSLVDNVKSDIQGFFNLSMNEKIKYGQK 124

Query: 121 DGSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLHEYTTELEK 180
           DG  EG+G   + +E+QTLDW D   + T P   R+   + ++P   RET+  Y++E++K
Sbjct: 125 DGDVEGFGQAFVASEDQTLDWADIFMILTLPLHLRKPHLFSKLPLPLRETIESYSSEMKK 184

Query: 181 LNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAF 240
           L+ +L + M   L ++     ++    ++ T + R N+YPPCP+P+L IG+ PH+D    
Sbjct: 185 LSMVLFEKMEKALQVQAVEIKEISEVFKDMTQVMRMNYYPPCPQPELAIGLTPHSDFGGL 244

Query: 241 TYLLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERK 300
           T LLQ  +VEGLQ   + +W  V   P A V+N GD  EIM+NG+++S  HRAV NS ++
Sbjct: 245 TILLQLNEVEGLQIKNEGRWISVKPLPNAFVVNVGDVLEIMTNGMYRSVDHRAVVNSTKE 304

Query: 301 RMSLAVFCIPNPDREIEPVNGVVNEARPRLYKKVKDYVSLYFEYYQR 347
           R+S+A F  PN + EI P++ ++    P L++    Y  L  E++ R
Sbjct: 305 RLSIATFHDPNLESEIGPISSLITPNTPALFRSGSTYGELVEEFHSR 351
Non-heme dioxygenase active on an unknown substrate. No activity with (S)-reticuline, salutaridine, papaverine, (S)-corytuberine, oripavine, (S)-scoulerine, pavine, noscapine, codeine or thebaine.
Papaver somniferum (taxid: 3469)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ6|FLS_PETCR Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|P51091|LDOX_MALDO Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1 Back     alignment and function description
>sp|Q41452|FLS_SOLTU Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
224120306347 predicted protein [Populus trichocarpa] 0.966 0.994 0.638 1e-133
224142523353 predicted protein [Populus trichocarpa] 0.969 0.980 0.626 1e-125
296084534381 unnamed protein product [Vitis vinifera] 0.966 0.905 0.609 1e-122
225446211377 PREDICTED: protein SRG1 [Vitis vinifera] 0.966 0.915 0.609 1e-122
2688828348 ethylene-forming-enzyme-like dioxygenase 0.963 0.988 0.595 1e-122
297847230348 oxidoreductase [Arabidopsis lyrata subsp 0.949 0.974 0.582 1e-118
15241348348 oxidoreductase, 2OG-Fe(II) oxygenase fam 0.949 0.974 0.591 1e-116
15222131348 2-oxoglutarate (2OG) and Fe(II)-dependen 0.949 0.974 0.576 1e-115
21593366348 ethylene-forming-enzyme-like dioxygenase 0.949 0.974 0.588 1e-115
15241383349 oxidoreductase, 2OG-Fe(II) oxygenase fam 0.949 0.971 0.580 1e-115
>gi|224120306|ref|XP_002331015.1| predicted protein [Populus trichocarpa] gi|222872945|gb|EEF10076.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/349 (63%), Positives = 285/349 (81%), Gaps = 4/349 (1%)

Query: 9   AQVELASKTVQELITSGKELPESYIYKGSDARSLDASLPLMDIPIIDIGLLTSPSSSSTQ 68
           A+  L S +VQE+  +G+E P  Y  KG+D   LDAS+PL+DIP++D+GLLTSPS+S+ Q
Sbjct: 3   AKTVLISNSVQEMALNGEEPPVKYFCKGNDVGVLDASVPLIDIPVVDLGLLTSPSTSA-Q 61

Query: 69  ELEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRKDGSTEGYG 128
           ELEK   A S WGCFQ +N HG+   FLDK+ +V K+FF    E K KYSR+  S EGYG
Sbjct: 62  ELEKFHLAASSWGCFQVVN-HGMTSSFLDKIRDVSKRFFALSMEDKQKYSREADSIEGYG 120

Query: 129 SDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLHEYTTELEKLNEILLKA 188
           +D+I+++ QT+DW+DRL+LT SP+DQR++KFWPE P+ FRETL+EYT +L+++NEILL+A
Sbjct: 121 NDMILSDHQTIDWSDRLYLTISPEDQRKIKFWPENPKDFRETLNEYTMKLQEINEILLRA 180

Query: 189 MAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQDKQ 248
           MAM LNLEE+ FLD YGE+    + ARFNFYPPCPRPD ++GVKPHADASA T+LLQDK+
Sbjct: 181 MAMSLNLEESSFLDQYGER--PLVAARFNFYPPCPRPDRILGVKPHADASAITFLLQDKE 238

Query: 249 VEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVFC 308
           VEGLQFLKDNQW+RVP+ P AL+IN GD  EIMSNGIFKSPVHR VTN+E++R +LAVFC
Sbjct: 239 VEGLQFLKDNQWFRVPIIPHALLINVGDQVEIMSNGIFKSPVHRVVTNTEKERNTLAVFC 298

Query: 309 IPNPDREIEPVNGVVNEARPRLYKKVKDYVSLYFEYYQRGRRPIEAAII 357
           IP+ D+EI+P +G+++E RP LYKKVKDYVS+YF+YYQ+G+RPIEA  I
Sbjct: 299 IPDSDKEIKPADGLISETRPSLYKKVKDYVSIYFQYYQQGKRPIEAVKI 347

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224142523|ref|XP_002324605.1| predicted protein [Populus trichocarpa] gi|222866039|gb|EEF03170.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296084534|emb|CBI25555.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225446211|ref|XP_002263317.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|2688828|gb|AAB88878.1| ethylene-forming-enzyme-like dioxygenase [Prunus armeniaca] Back     alignment and taxonomy information
>gi|297847230|ref|XP_002891496.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297337338|gb|EFH67755.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15241348|ref|NP_197540.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gi|27754538|gb|AAO22716.1| putative ethylene-forming dioxygenase [Arabidopsis thaliana] gi|28827734|gb|AAO50711.1| putative ethylene-forming dioxygenase [Arabidopsis thaliana] gi|332005456|gb|AED92839.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15222131|ref|NP_175364.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gi|5430761|gb|AAD43161.1|AC007504_16 Similar to ethylene-forming-enzyme-like dioxygenase [Arabidopsis thaliana] gi|332194303|gb|AEE32424.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21593366|gb|AAM65315.1| ethylene-forming-enzyme-like dioxygenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15241383|ref|NP_197555.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gi|21537316|gb|AAM61657.1| ethylene-forming-enzyme-like dioxygenase-like [Arabidopsis thaliana] gi|133778810|gb|ABO38745.1| At5g20550 [Arabidopsis thaliana] gi|332005474|gb|AED92857.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
TAIR|locus:2149214348 AT5G20400 [Arabidopsis thalian 0.949 0.974 0.591 6.3e-108
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.949 0.974 0.576 2.1e-107
TAIR|locus:2149907349 AT5G20550 [Arabidopsis thalian 0.949 0.971 0.580 5.7e-107
TAIR|locus:2154744349 AT5G54000 [Arabidopsis thalian 0.949 0.971 0.549 4.2e-102
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.941 0.923 0.42 4.8e-62
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.938 0.935 0.349 1.8e-55
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.929 0.919 0.364 4.8e-55
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.943 0.908 0.360 6.1e-55
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.893 0.896 0.368 1.3e-54
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.879 0.882 0.383 1.6e-54
TAIR|locus:2149214 AT5G20400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
 Identities = 204/345 (59%), Positives = 257/345 (74%)

Query:    16 KTVQELITSGKELPESYIYKGS---DARSLDASLPLMDIPIIDIGLLTSPSSSSTQELEK 72
             KTVQE++ +G+ LPE Y++  +   + + L+A++P MDIP ID+ LL S S +  QEL K
Sbjct:     7 KTVQEVVAAGEGLPERYLHAPTGDGEVQPLNAAVPEMDIPAIDLNLLLSSSEAGQQELSK 66

Query:    73 LRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRKDGSTEGYGSDII 132
             L SALS WG  Q +N HGI   FLDK+ ++ K+FF  P E K K +R+  S +GYG+D+I
Sbjct:    67 LHSALSTWGVVQVMN-HGITKAFLDKIYKLTKEFFALPTEEKQKCAREIDSIQGYGNDMI 125

Query:   133 IAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLHEYTTELEKLNEILLKAMAMC 192
             + ++Q LDW DRL++TT P+DQRQL FWPE+P  FRETLHEYT +   + E   KAMA  
Sbjct:   126 LWDDQVLDWIDRLYITTYPEDQRQLNFWPEVPLGFRETLHEYTMKQRIVIEQFFKAMARS 185

Query:   193 LNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQDKQVEGL 252
             L LEEN FLDMYGE  +AT+  RFN YPPCP PD VIGVKPHAD SA T LL DK V GL
Sbjct:   186 LELEENSFLDMYGE--SATLDTRFNMYPPCPSPDKVIGVKPHADGSAITLLLPDKDVGGL 243

Query:   253 QFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVFCIPNP 312
             QF KD +WY+ P+ P+ ++IN GD  EIMSNGI+KSPVHR VTN E++R+S+A FCIP  
Sbjct:   244 QFQKDGKWYKAPIVPDTILINVGDQMEIMSNGIYKSPVHRVVTNREKERISVATFCIPGA 303

Query:   313 DREIEPVNGVVNEARPRLYKKVKDYVSLYFEYYQRGRRPIEAAII 357
             D+EI+PVN +V+EARPRLYK VK YV LYF+YYQ+GRRPIEAA+I
Sbjct:   304 DKEIQPVNELVSEARPRLYKTVKKYVELYFKYYQQGRRPIEAALI 348
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149907 AT5G20550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154744 AT5G54000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.766
4th Layer1.14.11.9LOW CONFIDENCE prediction!
3rd Layer1.14.11.13LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_scaffold_152000026
hypothetical protein (347 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-165
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-91
PLN02216357 PLN02216, PLN02216, protein SRG1 3e-79
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 9e-79
PLN02704335 PLN02704, PLN02704, flavonol synthase 7e-67
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-66
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 3e-66
PLN02947374 PLN02947, PLN02947, oxidoreductase 4e-56
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 3e-52
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-50
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-50
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 2e-50
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 2e-50
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 7e-46
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-45
PLN02997325 PLN02997, PLN02997, flavonol synthase 3e-45
PLN02904357 PLN02904, PLN02904, oxidoreductase 1e-42
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 1e-42
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-42
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 9e-32
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 9e-26
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 5e-25
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 5e-24
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 1e-22
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 3e-22
PLN02485329 PLN02485, PLN02485, oxidoreductase 9e-22
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 6e-16
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 6e-07
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  464 bits (1195), Expect = e-165
 Identities = 210/345 (60%), Positives = 264/345 (76%), Gaps = 6/345 (1%)

Query: 16  KTVQELITSGKELPESYIYKGS---DARSLDASLPLMDIPIIDIGLLTSPSSSSTQELEK 72
           KTVQE++ +G+ LPE Y++  +   + + L+ ++P MDIP ID+ LL S S    +EL K
Sbjct: 7   KTVQEVVAAGEGLPERYLHTPTGDGEGQPLNGAVPEMDIPAIDLSLLLSSSDDGREELSK 66

Query: 73  LRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRKDGSTEGYGSDII 132
           L SALS WG  Q +N HGI   FLDK+ ++ KQFF  P E K K +R+ GS +GYG+D+I
Sbjct: 67  LHSALSTWGVVQVMN-HGITEAFLDKIYKLTKQFFALPTEEKQKCAREIGSIQGYGNDMI 125

Query: 133 IAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLHEYTTELEKLNEILLKAMAMC 192
           ++++Q LDW DRL+LTT P+DQRQLKFWP++P  FRETLHEYT +   + E   KAMA  
Sbjct: 126 LSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRETLHEYTMKQRLVIEKFFKAMARS 185

Query: 193 LNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQDKQVEGL 252
           L LEENCFL+MYGE  NATM  RFN YPPCPRPD VIGVKPHAD SAFT LL DK VEGL
Sbjct: 186 LELEENCFLEMYGE--NATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPDKDVEGL 243

Query: 253 QFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVFCIPNP 312
           QFLKD +WY+ P+ P+ ++IN GD  EIMSNGI+KSPVHR VTN E++R+S+A FCIP  
Sbjct: 244 QFLKDGKWYKAPIVPDTILINVGDQMEIMSNGIYKSPVHRVVTNREKERISVATFCIPGA 303

Query: 313 DREIEPVNGVVNEARPRLYKKVKDYVSLYFEYYQRGRRPIEAAII 357
           D+EI+PV+G+V+EARPRLYK VK YV L+F+YYQ+GRRPIEAA+I
Sbjct: 304 DKEIQPVDGLVSEARPRLYKTVKKYVELFFKYYQQGRRPIEAALI 348

Length = 348
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 357
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02947374 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02997325 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.88
PLN03176120 flavanone-3-hydroxylase; Provisional 99.87
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.8
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.11
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.0
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 93.65
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 92.3
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 92.2
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=1.7e-82  Score=608.05  Aligned_cols=338  Identities=38%  Similarity=0.683  Sum_probs=301.4

Q ss_pred             hcHHHHHh--CCCCCCCccccCCCCCCCcCC-CCCCCCCcEEEcCCCCCCCCChHHHHHHHHHHhhccceEEEEcCCCCC
Q 018379           16 KTVQELIT--SGKELPESYIYKGSDARSLDA-SLPLMDIPIIDIGLLTSPSSSSTQELEKLRSALSFWGCFQAINYHGIE   92 (357)
Q Consensus        16 ~~v~~~~~--~~~~~p~~y~~p~~~~~~~~~-~~~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~Gff~l~n~hgi~   92 (357)
                      +.|+.|+.  ++.+||++||+|+++++.... ......||+|||+.+.+++. +.+++++|.+||++||||||+| |||+
T Consensus        15 ~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~-~~~~~~~l~~Ac~~~GFF~v~n-HGI~   92 (357)
T PLN02216         15 PSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTA-MDSEVEKLDFACKEWGFFQLVN-HGID   92 (357)
T ss_pred             hhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCcc-HHHHHHHHHHHHHHCcEEEEEC-CCCC
Confidence            45999986  588999999999999864211 11124799999999876543 2568999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHhhCCCHHHhcccccCCCCccccccccccccccccccccccccCCCCccccccCcCCCCchhHHHHHH
Q 018379           93 PEFLDKMGEVGKQFFDFPPETKHKYSRKDGSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLH  172 (357)
Q Consensus        93 ~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~WP~~~~~fr~~~~  172 (357)
                      .++++++++.+++||+||.|+|+++.......+||+........+..||+|.|.+...|.....+|.||+.++.||+.++
T Consensus        93 ~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~  172 (357)
T PLN02216         93 SSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLE  172 (357)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHH
Confidence            99999999999999999999999997655567899765443445568999999877666555678999998999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhccccccccceEEeeeCCCCCCCCcccccCccCCCcEEEEeecCCCCce
Q 018379          173 EYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQDKQVEGL  252 (357)
Q Consensus       173 ~y~~~~~~la~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~qd~~~~GL  252 (357)
                      +|+++|.+|+.+||++|+++||+++++|.+.+.+  ...+.||++|||||+.++..+|+++|||+|+||||+||+.++||
T Consensus       173 ~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~--~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GL  250 (357)
T PLN02216        173 TYSAEVKSIAKILFAKMASALEIKPEEMEKLFDD--DLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGL  250 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc--CchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCce
Confidence            9999999999999999999999999999998853  34578999999999988889999999999999999995479999


Q ss_pred             eEeeCCcEEEecCCCCeEEEEccchhHhhhCCcccCCcceeccCCCCCeEEEEEeecCCCCceEecCCcccCCCCCCCCc
Q 018379          253 QFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVFCIPNPDREIEPVNGVVNEARPRLYK  332 (357)
Q Consensus       253 qv~~~g~W~~V~~~~g~~vVnvGd~l~~~TnG~~~s~~HRV~~~~~~~R~Si~~F~~P~~d~~i~pl~~~~~~~~p~~y~  332 (357)
                      ||+++|+|++|+|.||++|||+||+||+||||+|||++|||+.++.++||||+||+.|+.|++|+|+++|+++++|++|+
T Consensus       251 QV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~  330 (357)
T PLN02216        251 QIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFK  330 (357)
T ss_pred             eEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCC
Confidence            99999999999999999999999999999999999999999988888999999999999999999999999999999999


Q ss_pred             ChH--HHHHHHHHHhcCCCCccccccC
Q 018379          333 KVK--DYVSLYFEYYQRGRRPIEAAII  357 (357)
Q Consensus       333 ~~~--e~~~~~~~~~~~~~~~~~~~~~  357 (357)
                      +++  ||+..++.+...++..++.+||
T Consensus       331 ~~t~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        331 SLTTKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             CcCHHHHHHHHHhcccCCcchhhhhcC
Confidence            999  9999999998889999999886

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 8e-44
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 8e-44
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 6e-43
1w9y_A319 The Structure Of Acc Oxidase Length = 319 5e-36
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 1e-14
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 9e-09
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 1e-08
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 5e-06
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  174 bits (440), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 91/267 (34%), Positives = 145/267 (54%), Gaps = 5/267 (1%)
Query: 51  IPIIDIGLLTSPSSSSTQE-LEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDF 109
           +P ID+  + S      +  +E+L+ A   WG    IN HGI  + ++++ + G++FF  
Sbjct: 47  VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLIN-HGIPADLMERVKKAGEEFFSL 105
Query: 110 PPETKHKYS--RKDGSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESF 167
             E K KY+  +  G  +GYGS +       L+W D  F    P+++R L  WP+ P  +
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 165
Query: 168 RETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDL 227
            E   EY   L  L   + KA+++ L LE +      G  E   +  + N+YP CP+P+L
Sbjct: 166 IEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPEL 225
Query: 228 VIGVKPHADASAFTYLLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFK 287
            +GV+ H D SA T++L +  V GLQ   + +W      P+++V++ GD  EI+SNG +K
Sbjct: 226 ALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK 284
Query: 288 SPVHRAVTNSERKRMSLAVFCIPNPDR 314
           S +HR + N E+ R+S AVFC P  D+
Sbjct: 285 SILHRGLVNKEKVRISWAVFCEPPKDK 311
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-139
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-132
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 3e-75
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 4e-75
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 6e-64
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 1e-63
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  398 bits (1026), Expect = e-139
 Identities = 106/356 (29%), Positives = 176/356 (49%), Gaps = 15/356 (4%)

Query: 13  LASKTVQELITSG-KELPESYIY------KGSDARSLDASLPLMDIPIIDIGLLTSPSSS 65
           +A + V+ L  SG   +P+ YI         +D    +       +P ID+  + S    
Sbjct: 2   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61

Query: 66  STQE-LEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRKD--G 122
             +  +E+L+ A   WG    IN HGI  + ++++ + G++FF    E K KY+     G
Sbjct: 62  IRENCIEELKKASLDWGVMHLIN-HGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATG 120

Query: 123 STEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLHEYTTELEKLN 182
             +GYGS +       L+W D  F    P+++R L  WP+ P  + E   EY   L  L 
Sbjct: 121 KIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLA 180

Query: 183 EILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTY 242
             + KA+++ L LE +      G  E   +  + N+YP CP+P+L +GV+ H D SA T+
Sbjct: 181 TKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF 240

Query: 243 LLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRM 302
           +L +  V GLQ   + +W      P+++V++ GD  EI+SNG +KS +HR + N E+ R+
Sbjct: 241 ILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRI 299

Query: 303 SLAVFCIPNPDR-EIEPVNGVVNEARPRLYKKVKDYVSLYFEYYQRGRRPIEAAII 357
           S AVFC P  D+  ++P+  +V+   P  +       + + E+   G+   E    
Sbjct: 300 SWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRT--FAQHIEHKLFGKEQEELVSE 353
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 95.61
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.25
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 89.6
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 84.63
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 84.29
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 82.41
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 82.09
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 81.18
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=7.6e-82  Score=604.36  Aligned_cols=334  Identities=30%  Similarity=0.592  Sum_probs=295.7

Q ss_pred             hcHHHHHh-CCCCCCCccccCCCCCCCcCC---CC---CCCCCcEEEcCCCCCCCCC-hHHHHHHHHHHhhccceEEEEc
Q 018379           16 KTVQELIT-SGKELPESYIYKGSDARSLDA---SL---PLMDIPIIDIGLLTSPSSS-STQELEKLRSALSFWGCFQAIN   87 (357)
Q Consensus        16 ~~v~~~~~-~~~~~p~~y~~p~~~~~~~~~---~~---~~~~iPvIDls~l~~~~~~-~~~~~~~l~~A~~~~Gff~l~n   87 (357)
                      ++||+|++ |+.+||.+||+|+++++....   ..   ....||||||+.+.+++++ +.+++++|.+||++||||||+|
T Consensus         5 ~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~n   84 (356)
T 1gp6_A            5 ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLIN   84 (356)
T ss_dssp             CCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             ccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeC
Confidence            57999999 889999999999888764221   01   1236999999999765543 2568999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCHHHhcccccCC--CCccccccccccccccccccccccccCCCCccccccCcCCCCch
Q 018379           88 YHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRKD--GSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPE  165 (357)
Q Consensus        88 ~hgi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~WP~~~~  165 (357)
                       |||+.++++++++.+++||+||.|+|+++....  ...+||+........+..||+|.|++...|.....+|.||+.++
T Consensus        85 -HGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~  163 (356)
T 1gp6_A           85 -HGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS  163 (356)
T ss_dssp             -CSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSST
T ss_pred             -CCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcch
Confidence             999999999999999999999999999997643  46799987655455567899999988766654456799999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhccccccccceEEeeeCCCCCCCCcccccCccCCCcEEEEee
Q 018379          166 SFRETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQ  245 (357)
Q Consensus       166 ~fr~~~~~y~~~~~~la~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q  245 (357)
                      +||+.+++|++.|.+++..|+++|+++||+++++|.+.+...+.+.+.||++|||||+.++..+|+++|||+|+||||+|
T Consensus       164 ~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q  243 (356)
T 1gp6_A          164 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH  243 (356)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEEE
Confidence            99999999999999999999999999999999999998841112577899999999998888899999999999999999


Q ss_pred             cCCCCceeEeeCCcEEEecCCCCeEEEEccchhHhhhCCcccCCcceeccCCCCCeEEEEEeecCCCCc-eEecCCcccC
Q 018379          246 DKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVFCIPNPDR-EIEPVNGVVN  324 (357)
Q Consensus       246 d~~~~GLqv~~~g~W~~V~~~~g~~vVnvGd~l~~~TnG~~~s~~HRV~~~~~~~R~Si~~F~~P~~d~-~i~pl~~~~~  324 (357)
                      | .++||||+++|+|++|+|.||++|||+||+||+||||+|||++|||+++++++||||+||++|+.|+ +|.|+++|++
T Consensus       244 d-~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~~  322 (356)
T 1gp6_A          244 N-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVS  322 (356)
T ss_dssp             C-SCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCC
T ss_pred             c-CCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhcC
Confidence            8 8999999999999999999999999999999999999999999999998888999999999999999 9999999999


Q ss_pred             CCCCCCCcChH--HHHHHHHHHhcCCCCc
Q 018379          325 EARPRLYKKVK--DYVSLYFEYYQRGRRP  351 (357)
Q Consensus       325 ~~~p~~y~~~~--e~~~~~~~~~~~~~~~  351 (357)
                      +++|++|++++  ||++.++.++++++..
T Consensus       323 ~~~p~~y~~~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          323 VESPAKFPPRTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             SSSCCSSCCEEHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCccCCCccHHHHHHHHHHhccCcchh
Confidence            99999999999  9999999887766544
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 357
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-66
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 4e-64
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 2e-52
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 7e-43
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  212 bits (539), Expect = 1e-66
 Identities = 100/341 (29%), Positives = 168/341 (49%), Gaps = 18/341 (5%)

Query: 18  VQELITSG-KELPESYIY------KGSDARSLDASLPLMDIPIIDIGLLTSPSSSSTQEL 70
           V+ L  SG   +P+ YI         +D    +       +P ID+  + S      +  
Sbjct: 6   VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65

Query: 71  -EKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRKD--GSTEGY 127
            E+L+ A   WG    +  HGI  + ++++ + G++FF    E K KY+     G  +GY
Sbjct: 66  IEELKKASLDWGVMH-LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGY 124

Query: 128 GSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLHEYTTELEKLNEILLK 187
           GS +       L+W D  F    P+++R L  WP+ P  + E   EY   L  L   + K
Sbjct: 125 GSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFK 184

Query: 188 AMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQDK 247
           A+++ L LE +      G  E   +  + N+YP CP+P+L +GV+ H D SA T++L + 
Sbjct: 185 ALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN- 243

Query: 248 QVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVF 307
            V GLQ   + +W      P+++V++ GD  EI+SNG +KS +HR + N E+ R+S AVF
Sbjct: 244 MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 303

Query: 308 CIPNPDREI-EPVNGVVNEARPRLYKKVKDYVSLYFEYYQR 347
           C P  D+ + +P+  +V+   P  +         + ++ + 
Sbjct: 304 CEPPKDKIVLKPLPEMVSVESPAKFPPRT-----FAQHIEH 339
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 91.97
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 89.93
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.7e-77  Score=572.20  Aligned_cols=327  Identities=31%  Similarity=0.605  Sum_probs=285.2

Q ss_pred             hcHHHHHh-CCCCCCCccccCCCCCCCcCC------CCCCCCCcEEEcCCCCCCCCCh-HHHHHHHHHHhhccceEEEEc
Q 018379           16 KTVQELIT-SGKELPESYIYKGSDARSLDA------SLPLMDIPIIDIGLLTSPSSSS-TQELEKLRSALSFWGCFQAIN   87 (357)
Q Consensus        16 ~~v~~~~~-~~~~~p~~y~~p~~~~~~~~~------~~~~~~iPvIDls~l~~~~~~~-~~~~~~l~~A~~~~Gff~l~n   87 (357)
                      ..||+|++ |+.+||..||+|+++++....      .....+||||||+.+.+++++. .+++++|.+||+++|||||+|
T Consensus         4 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~n   83 (349)
T d1gp6a_           4 ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLIN   83 (349)
T ss_dssp             CCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             cchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence            47999999 999999999999999876321      2234479999999998877543 678999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCHHHhcccccC--CCCccccccccccccccccccccccccCCCCccccccCcCCCCch
Q 018379           88 YHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRK--DGSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPE  165 (357)
Q Consensus        88 ~hgi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~--~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~WP~~~~  165 (357)
                       |||+.++++++++++++||+||.|+|++|...  .+...||+........+..++.+.+.....+.....+|.||..++
T Consensus        84 -HGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~  162 (349)
T d1gp6a_          84 -HGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS  162 (349)
T ss_dssp             -CSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSST
T ss_pred             -cCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccc
Confidence             99999999999999999999999999999652  234455655444444445666665543334445556799999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhccccccccceEEeeeCCCCCCCCcccccCccCCCcEEEEee
Q 018379          166 SFRETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTYLLQ  245 (357)
Q Consensus       166 ~fr~~~~~y~~~~~~la~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q  245 (357)
                      .|++.+.+|+++|.+++.+|+++++++||+++++|.+.+...+...+.||++|||+++.+...+|+++|||+|+||||+|
T Consensus       163 ~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q  242 (349)
T d1gp6a_         163 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH  242 (349)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEec
Confidence            99999999999999999999999999999999999888742224567899999999998888999999999999999999


Q ss_pred             cCCCCceeEeeCCcEEEecCCCCeEEEEccchhHhhhCCcccCCcceeccCCCCCeEEEEEeecCCCCceE-ecCCcccC
Q 018379          246 DKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAVTNSERKRMSLAVFCIPNPDREI-EPVNGVVN  324 (357)
Q Consensus       246 d~~~~GLqv~~~g~W~~V~~~~g~~vVnvGd~l~~~TnG~~~s~~HRV~~~~~~~R~Si~~F~~P~~d~~i-~pl~~~~~  324 (357)
                      | .++||||+.+|+|++|+|.+|++|||+||+||+||||+||||+|||+.+++++||||+||++|+.|++| +|+++|++
T Consensus       243 ~-~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~  321 (349)
T d1gp6a_         243 N-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVS  321 (349)
T ss_dssp             C-SCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCC
T ss_pred             c-CCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcC
Confidence            8 999999999999999999999999999999999999999999999999988999999999999999865 89999999


Q ss_pred             CCCCCCCcChH--HHHHHHHHH
Q 018379          325 EARPRLYKKVK--DYVSLYFEY  344 (357)
Q Consensus       325 ~~~p~~y~~~~--e~~~~~~~~  344 (357)
                      +++|++|++++  ||++.++..
T Consensus       322 ~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         322 VESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             SSSCCSSCCEEHHHHHHHHHHH
T ss_pred             CCCCCCCCCccHHHHHHHHHhc
Confidence            99999999999  999998754
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure