Citrus Sinensis ID: 018383

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
MGLQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQPVNEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKARSSNQASGRKRRESTISDGFPDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESESGSKAIDLNCKGLDQLNGPL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHccccccHHHccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccEccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHccccccccccccccccHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccHccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccEEEccccccccccccc
Coil and Loop (DISEMBL)
mglqnqnmnlvlstdakprlkwtpeLHQRFVDAVnhlggpdkatpkslmrvmgipgltLYHLKSHLQkyrlgksqHVEACIDNKQVVEyketqsssdghvnrnisdgtLNQLNESLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMVsmgcpsssvselteagtsslkdFERKQIRSTICSmessltssessgrkeekqpvneigdtdtcksnkttpelqlmdihihpqdkpfkarssnqasgrkrrestisdgfpdEQQTAKRLATQNekyddqlrntglvgrfdlnsqyqnesesgskaidlnckgldqlngpl
Flexible Loop (DISEMBL)
mglqnqnmnlvlstdAKPRLKWTPELHQRFVDAvnhlggpdkatpksLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVEACIDNKQVVEYKetqsssdghvnrNISDGTLNQLNESLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMVSMGCPSSSVSELTeagtsslkdferkQIRSTICsmessltssessgrkeekqpvneigdtdtcksnKTTPELQLMDihihpqdkpfkarssnqasgrkrrestisdgfpdeqQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNesesgskaidlnckgldqlngpl
Low Complexity Region (SEG)
MGLQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRsticsmessltssessGRKEEKQPVNEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKARSSNQASGRKRRESTISDGFPDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESESGSKAIDLNCKGLDQLNGPL
Disordered region (IsUnstruct)
*******************LKWTPELHQRFVDAVNHLGG******KSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVEACIDNKQVVE***************************LQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLK*******************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*******************LKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQK*****************************************************************************************************************************************************************************************************************************************************************************SGSKAIDLNCKGLDQLNG**
Disordered Region (DISEMBL)
MGLQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVEACIDNKQVVEY*********HVNRNISDGTLNQLNESLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMV******************SLKDFERKQIRSTIC***********************IGDTDTCKSNKTTPELQLMDIHIHPQDK*********************DGFPDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQY********KAIDLNCKGLDQLNGPL
Disordered Region (DISPRO)
***************AKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ***************************************SLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLA*******************************************************************************************TPELQLMDIHIH*Q*******************************************DDQLRNTGLVGRFDLNSQYQNESESGSKAIDLNCKGLDQLN***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQPVNEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKARSSNQASGRKRRESTISDGFPDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESESGSKAIDLNCKGLDQLNGPL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	357	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	no	no	0.400	0.399	0.606	4e-46
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.394	0.341	0.456	1e-32
Q700D9	255	Putative Myb family trans	no	no	0.148	0.207	0.622	8e-14
Q9ZWJ9	664	Two-component response re	no	no	0.165	0.088	0.545	5e-12
Q93WJ9	403	Transcription repressor K	no	no	0.159	0.141	0.561	5e-12
Q9C616	388	Probable transcription fa	no	no	0.159	0.146	0.561	6e-12
Q941I2	322	Probable transcription fa	no	no	0.159	0.177	0.561	1e-11
Q940D0	690	Two-component response re	no	no	0.165	0.085	0.530	1e-11
Q9FJV5	276	Probable transcription fa	no	no	0.238	0.307	0.421	2e-11
Q0J235	532	Probable transcription fa	no	no	0.159	0.107	0.578	2e-11

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  185 bits (470), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/160 (60%), Positives = 120/160 (75%), Gaps = 17/160 (10%)

Query: 10  LVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69
           LVL+TD KPRL+WT ELH+RFVDAV  LGGPDKATPK++MRVMG+ GLTLYHLKSHLQK+
Sbjct: 27  LVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86

Query: 70  RLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNI--SDGTLNQ-LNESLQIAQALQVQM 126
           RLGK  H E    +      KE   +S   + RN+  S G +++ +NE         +QM
Sbjct: 87  RLGKQPHKEYGDHST-----KEGSRASAMDIQRNVASSSGMMSRNMNE---------MQM 132

Query: 127 EVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAG 166
           EVQR+LHEQ+EVQRHLQLRIEAQGKY+QS+L++A +TLAG
Sbjct: 133 EVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLAG 172

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 104/160 (65%), Gaps = 19/160 (11%)

Query: 16  AKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ 75
           +K R++WTPELH+ FV+AVN LGG ++ATPK++++++  PGLT+YH+KSHLQKYR  +  
Sbjct: 230 SKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTAR-- 287

Query: 76  HVEACIDNKQVVEYKETQSSSDGHVNR----NISDGTLNQLNESLQIAQALQVQMEVQRK 131
                        YK   S   G        +I D     +  S++I QAL++QMEVQ++
Sbjct: 288 -------------YKPETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQALRLQMEVQKR 334

Query: 132 LHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSS 171
           LHEQ+E+QR LQL+IE QG+YLQ + +K Q+     SSSS
Sbjct: 335 LHEQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQDNKSSSS 374

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query: 18 PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70
          PRL+WTPELH+ FV AV+ LGG  KATPK ++++M + GLT+ H+KSHLQ YR
Sbjct: 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 7/66 (10%)

Query: 17  KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL----- 71
           KPR+ W+ ELHQ+FV AVN LG  DKA PK ++ +M +PGLT  ++ SHLQKYR+     
Sbjct: 216 KPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRL 274

Query: 72  -GKSQH 76
            G SQH
Sbjct: 275 GGVSQH 280

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 18  PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74
           PR++WT  LH RFV AV  LGG ++ATPKS++ +M +  LTL H+KSHLQ YR  K+
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 276

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 18  PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74
           PR++WT  LH RFV AV  LGG ++ATPKS++ +M +  LTL H+KSHLQ YR  K+
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 270

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query: 18  PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74
           PR++WT  LH  FV AV  LGG ++ATPKS++ +M +  LTL H+KSHLQ YR  KS
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKS 221

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 7/66 (10%)

Query: 17  KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL----- 71
           KPR+ W+ ELHQ+FV AVN LG  +KA PK ++ +M +PGLT  ++ SHLQKYR+     
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRL 295

Query: 72  -GKSQH 76
            G SQH
Sbjct: 296 GGVSQH 301

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 10/95 (10%)

Query: 18  PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHV 77
           PR++WT  LH  FV AV  LGG ++ATPKS++ +M +  LTL H+KSHLQ YR  K    
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK---- 161

Query: 78  EACID----NKQVVEYKETQSSSDGHVNRNISDGT 108
             C D     +  VE +  Q   D + N    +GT
Sbjct: 162 --CTDKGSPGEGKVEKEAEQRIEDNNNNEEADEGT 194

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 18  PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74
           PR++WT  LH RFV AV  LGG ++ATPKS++ +M +  LTL H+KSHLQ YR  KS
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKS 381

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
359473357	684	PREDICTED: uncharacterized protein LOC10	0.946	0.494	0.703	1e-119
296086358	296	unnamed protein product [Vitis vinifera]	0.806	0.972	0.734	1e-104
356502547	351	PREDICTED: uncharacterized protein LOC10	0.935	0.951	0.637	1e-102
224109002	338	predicted protein [Populus trichocarpa]	0.879	0.928	0.649	1e-102
356498314	339	PREDICTED: uncharacterized protein LOC10	0.918	0.967	0.633	1e-101
388522385	344	unknown [Lotus japonicus]	0.932	0.968	0.603	1e-98
255562888	361	transcription factor, putative [Ricinus	0.921	0.911	0.626	7e-98
224101365	296	predicted protein [Populus trichocarpa]	0.817	0.986	0.660	4e-95
356577381	334	PREDICTED: uncharacterized protein LOC10	0.901	0.964	0.604	2e-88
356521672	331	PREDICTED: uncharacterized protein LOC10	0.901	0.972	0.588	4e-87

>gi|359473357|ref|XP_002269530.2| PREDICTED: uncharacterized protein LOC100255052 [Vitis vinifera]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/347 (70%), Positives = 273/347 (78%), Gaps = 9/347 (2%)

Query: 3   LQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHL 62
           +QNQ+M+LVLSTDAKPRLKWTPELH RFV+AV HLGGPDKATPK+LMRVMG+PGLTLYHL
Sbjct: 345 MQNQDMSLVLSTDAKPRLKWTPELHHRFVEAVAHLGGPDKATPKTLMRVMGVPGLTLYHL 404

Query: 63  KSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQAL 122
           KSHLQKYRLGKSQ  E   DN Q  +Y E Q+  + H +R   DGT N +NESLQIAQAL
Sbjct: 405 KSHLQKYRLGKSQQAETFSDNNQE-DYCENQNR-EIHFDRETGDGTQNPINESLQIAQAL 462

Query: 123 QVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELS 182
           QVQ+EVQRKLHE IEVQRHLQLRIEAQGKYLQSVLKKAQETLAGY+SSS GVELAKAEL+
Sbjct: 463 QVQLEVQRKLHEHIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYNSSSVGVELAKAELT 522

Query: 183 QLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQPV 242
           QLVS+   GCPSSS SELTE G S LKD ERK +R T CS+ESSLTSSESSGRKEEKQP 
Sbjct: 523 QLVSIFDTGCPSSSFSELTETGGSGLKDKERKPMRGTGCSLESSLTSSESSGRKEEKQPK 582

Query: 243 NEIGDTDTCKSNKTTPELQLMDIHIHPQD-KPFKARSSNQASGRKRRESTISDGFPDEQQ 301
           NE G+T+ C S   T    LM+  IHP D + +K+ SSNQASGRKR  STISDG   EQ 
Sbjct: 583 NENGNTNKCTSMAPT----LME--IHPGDSQAWKSGSSNQASGRKRNGSTISDGNCVEQP 636

Query: 302 TAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESESGSKAIDLNCK 348
           + KR  T   K  D+LR  GL+   DLN+QYQ + +S  KAIDLNCK
Sbjct: 637 SGKRSPTYAGKTGDRLRKLGLLETLDLNTQYQIDIDSAPKAIDLNCK 683

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086358|emb|CBI31947.3| unnamed protein product [Vitis vinifera]

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/297 (73%), Positives = 240/297 (80%), Gaps = 9/297 (3%)

Query: 8   MNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQ 67
           M+LVLSTDAKPRLKWTPELH RFV+AV HLGGPDKATPK+LMRVMG+PGLTLYHLKSHLQ
Sbjct: 1   MSLVLSTDAKPRLKWTPELHHRFVEAVAHLGGPDKATPKTLMRVMGVPGLTLYHLKSHLQ 60

Query: 68  KYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQALQVQME 127
           KYRLGKSQ  E   DN Q  +Y E Q+  + H +R   DGT N +NESLQIAQALQVQ+E
Sbjct: 61  KYRLGKSQQAETFSDNNQE-DYCENQNR-EIHFDRETGDGTQNPINESLQIAQALQVQLE 118

Query: 128 VQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSM 187
           VQRKLHE IEVQRHLQLRIEAQGKYLQSVLKKAQETLAGY+SSS GVELAKAEL+QLVS+
Sbjct: 119 VQRKLHEHIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYNSSSVGVELAKAELTQLVSI 178

Query: 188 VSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQPVNEIGD 247
              GCPSSS SELTE G S LKD ERK +R T CS+ESSLTSSESSGRKEEKQP NE G+
Sbjct: 179 FDTGCPSSSFSELTETGGSGLKDKERKPMRGTGCSLESSLTSSESSGRKEEKQPKNENGN 238

Query: 248 TDTCKSNKTTPELQLMDIHIHPQD-KPFKARSSNQASGRKRRESTISDGFPDEQQTA 303
           T+ C S   T    LM+  IHP D + +K+ SSNQASGRKR  STISDG   EQ +A
Sbjct: 239 TNKCTSMAPT----LME--IHPGDSQAWKSGSSNQASGRKRNGSTISDGNCVEQPSA 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502547|ref|XP_003520080.1| PREDICTED: uncharacterized protein LOC100787178 [Glycine max]

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/350 (63%), Positives = 263/350 (75%), Gaps = 16/350 (4%)

Query: 3   LQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHL 62
           +QNQ M+ VLSTD+KPRLKWTPELH+RF++A N LGG DKATPKSLMRVMGIPGLTLYHL
Sbjct: 6   MQNQTMHFVLSTDSKPRLKWTPELHRRFIEATNQLGGEDKATPKSLMRVMGIPGLTLYHL 65

Query: 63  KSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQAL 122
           KSHLQK+RLGKSQ +E C DNKQ  +Y ET+SSSDGH +R IS G  NQ+ E++QIAQAL
Sbjct: 66  KSHLQKFRLGKSQQLETCSDNKQE-DYIETKSSSDGHCSREISLGAQNQITENMQIAQAL 124

Query: 123 QVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELS 182
           Q+QMEVQRKL+EQIEVQ+HLQLRIEAQGKYLQSVLKKAQE LAGY+SS  G+EL KAELS
Sbjct: 125 QMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALAGYNSSPVGIELTKAELS 184

Query: 183 QLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQPV 242
           QLV++++  CPSS +SELTE    SL   ERK+ R T+CS+ESSLTSSESSGRKEEKQP+
Sbjct: 185 QLVTIINDACPSSPISELTETRGLSLSCGERKRDRGTMCSLESSLTSSESSGRKEEKQPM 244

Query: 243 NEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFK-ARSSNQASGRKRR-ESTISD--GFPD 298
            EI +  +  SN  + EL LM+IH   +DK      SSN+ SGRKR   +T SD      
Sbjct: 245 EEIVEFKS--SNNVSFELPLMEIHT--EDKASNGGLSSNEGSGRKRSLAATESDDGSCVV 300

Query: 299 EQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESES-GSKAIDLNC 347
           EQ   KR        +  LR   L    DLNSQ Q++ +S GSK +DLNC
Sbjct: 301 EQPCGKRCG------NKLLRKVKLSEMLDLNSQCQSDMDSTGSKTLDLNC 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109002|ref|XP_002315046.1| predicted protein [Populus trichocarpa] gi|222864086|gb|EEF01217.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 230/354 (64%), Positives = 253/354 (71%), Gaps = 40/354 (11%)

Query: 1   MGLQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLY 60
           MGL++QNMNLVLSTD KPRLKWT ELHQRFV+AVN LGG D+ATPKSLMRVM IPGLTLY
Sbjct: 1   MGLRHQNMNLVLSTDGKPRLKWTQELHQRFVEAVNQLGGADRATPKSLMRVMEIPGLTLY 60

Query: 61  HLKSHLQ-----------KYRLGKSQHVEACIDNKQ----VVEYKETQSSSDGHVNRN-- 103
           HLKSHLQ           KYRLGKSQ     I+N Q    V + KE QSS D H   +  
Sbjct: 61  HLKSHLQAILFRMIRSIYKYRLGKSQQSLISIENNQEVLFVADAKEIQSSDD-HFQESAF 119

Query: 104 -------ISDGTLNQLNESLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSV 156
                   SDG  + +N S QIAQALQ+QMEV+RKLHEQIEVQRHLQLRIEAQGKYLQSV
Sbjct: 120 IQSSGGICSDGNQHPINGSFQIAQALQMQMEVKRKLHEQIEVQRHLQLRIEAQGKYLQSV 179

Query: 157 LKKAQETLAGYSSSSAGVELAKAELSQLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQI 216
           LKKAQETLAGY+S S GVELAKAELS+LVSM + GCPSSS+S+LTE G SSL+D ER Q 
Sbjct: 180 LKKAQETLAGYNSYSMGVELAKAELSRLVSMANSGCPSSSISDLTETGGSSLRDMERTQT 239

Query: 217 RSTICSMESSLTSSESSGRKEEKQPVNEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKA 276
           RS +CSMESSLTSSESSGRKE+ Q  NEI DT+  KSN  + EL LMD  IHPQD P   
Sbjct: 240 RSAVCSMESSLTSSESSGRKEDMQQKNEIHDTE--KSNTASVELSLMD--IHPQDNPLNT 295

Query: 277 RSSNQASGRKRRESTISDGFPDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLNS 330
            SSNQ  G+KR    ISDG   EQ  A RL     K  DQL     +G FDLNS
Sbjct: 296 CSSNQ--GKKRSGRIISDGVSVEQPLASRL-----KNGDQLS----LGMFDLNS 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498314|ref|XP_003517998.1| PREDICTED: uncharacterized protein LOC100784670 [Glycine max]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/344 (63%), Positives = 254/344 (73%), Gaps = 16/344 (4%)

Query: 8   MNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQ 67
           M+ VLSTD+KPRLKWTPELH+RF++A N LGG DKATPKSLMRVMGIPGLTLYHLKSHLQ
Sbjct: 1   MHFVLSTDSKPRLKWTPELHRRFIEATNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQ 60

Query: 68  KYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQALQVQME 127
           KYRLGKSQ +E C DNKQ  +Y ET+SSSDGH +R IS G  NQL E++QIAQALQ+QME
Sbjct: 61  KYRLGKSQELETCSDNKQE-DYIETKSSSDGHCSREISIGAQNQLTENMQIAQALQMQME 119

Query: 128 VQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSM 187
           VQRKLHEQIEVQ+HLQLRIEAQGKYLQSVLKKAQE LAGY+SS  G+EL KAELSQLV++
Sbjct: 120 VQRKLHEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALAGYNSSPVGIELTKAELSQLVTI 179

Query: 188 VSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQPVNEIGD 247
           ++  CPSS +SELTE    SL   ERK+ R T+CS+ESSLTSSESSGRKEEKQP+ EI +
Sbjct: 180 INNACPSSPISELTETRGLSLSCGERKRDRGTMCSLESSLTSSESSGRKEEKQPMEEIVE 239

Query: 248 TDTCKSNKTTPELQLMDIHIHPQDKPFKARSSNQASGRKRRESTI--SDG-FPDEQQTAK 304
             +         LQL  + I  +DK     SSN+ASGRKR  +     DG    EQ   K
Sbjct: 240 FKS----SINVSLQLPLMEILTEDKASNGGSSNEASGRKRSATAAESDDGSCVVEQPCGK 295

Query: 305 RLATQNEKYDDQLRNTGLVGRFDLNSQYQNESES-GSKAIDLNC 347
           R         ++LR   L    DLNSQ Q++ +S  SK +DLNC
Sbjct: 296 RCG-------NKLRKAKLSEMLDLNSQCQSDMDSTSSKTLDLNC 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522385|gb|AFK49254.1| unknown [Lotus japonicus]

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 212/351 (60%), Positives = 259/351 (73%), Gaps = 18/351 (5%)

Query: 1   MGLQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLY 60
           MGLQNQ+++ VLSTDAKPRLKWTPELHQRF++A N LGG +KATPK+LMRVMGIPGLTLY
Sbjct: 1   MGLQNQSVHFVLSTDAKPRLKWTPELHQRFIEATNQLGGAEKATPKNLMRVMGIPGLTLY 60

Query: 61  HLKSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQ 120
           HLKSHLQKYRLGKSQ +E C D KQ  +Y     SSD H +R IS G  NQ  E+LQIA+
Sbjct: 61  HLKSHLQKYRLGKSQVLETCSDGKQEDDYDTETKSSDDHCSREISFGAQNQNTENLQIAE 120

Query: 121 ALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSS-AGVELAKA 179
           ALQ+QMEVQRKL+EQIEVQ+HLQLRIEAQGKYLQSVLKKAQE L+GY+++S  G+EL K+
Sbjct: 121 ALQMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALSGYNNTSPVGIELTKS 180

Query: 180 ELSQLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEK 239
           ELSQLV+M++  CP+S  SELTE    SL   +RK+ R T+CS+ESSLTSSESSGR+EEK
Sbjct: 181 ELSQLVTMINHACPNSPTSELTETRGLSLNCGQRKRDRGTMCSLESSLTSSESSGRREEK 240

Query: 240 QPV-NEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKARSSNQASGRKRRESTISDGFPD 298
           QP+  EIGD    K++ T P L+L  + +H +DK     SS++A+GRKR  +T  DG   
Sbjct: 241 QPMEEEIGDF---KNSNTIP-LELTLLTVHHEDKASNGDSSSEANGRKRSAATKFDGSSA 296

Query: 299 EQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESESGSK--AIDLNC 347
           EQ   KR +          R   L    DLNSQ +++ +S S   A+DLNC
Sbjct: 297 EQPPGKRCS----------RKPKLSEMLDLNSQCESDMDSTSSKTALDLNC 337

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562888|ref|XP_002522449.1| transcription factor, putative [Ricinus communis] gi|223538334|gb|EEF39941.1| transcription factor, putative [Ricinus communis]

 Score =  363 bits (932), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 235/375 (62%), Positives = 271/375 (72%), Gaps = 46/375 (12%)

Query: 3   LQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHL 62
           LQNQNMNLVLSTDAKPRLKWTPELHQRFV+AVN LGG DKATPKSLMRVMGIPGLTLYHL
Sbjct: 6   LQNQNMNLVLSTDAKPRLKWTPELHQRFVEAVNQLGGADKATPKSLMRVMGIPGLTLYHL 65

Query: 63  KSHLQKYRLGKSQHVE----------ACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQL 112
           KSHLQKYRLGKSQ +           A I+NKQ  +YKE Q S++  +   I++   N  
Sbjct: 66  KSHLQKYRLGKSQLLHSESPSQSQSQASIENKQ-EDYKEIQ-STNCELKAGIAEEIQNPT 123

Query: 113 NESLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSA 172
           NES QIAQALQ+QMEVQRKLHEQIEVQRHLQLRIEAQGKYL+SVLKKAQETL+GY+ SSA
Sbjct: 124 NESFQIAQALQMQMEVQRKLHEQIEVQRHLQLRIEAQGKYLRSVLKKAQETLSGYNPSSA 183

Query: 173 -GVELAKAELSQLVSMVSMGCPSSSVSELTEAGTSSLKD-FERKQI--RSTICSMESSLT 228
            G+E+AKAELS+LVSMV+ GC SSS+SELTE G S L D  ++ Q+  R T+CS ESSLT
Sbjct: 184 MGIEIAKAELSRLVSMVNTGCSSSSISELTEIGNSILNDTTDKNQMIRRGTVCSAESSLT 243

Query: 229 SSESSGRKEEK-QPVNEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKA----------R 277
           SSESSGRKE+  Q  NEIG T+  KS  T+ EL LMD   H QDK +            +
Sbjct: 244 SSESSGRKEDDMQQKNEIGATN--KSITTSLELPLMD--AHRQDKSWNNNNNNHNNNTYQ 299

Query: 278 SSNQASGRKRRESTI-SDGFPDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNES 336
            +NQA  +KR  +TI SDG   +Q  AKR      +  +QLR       FDLNSQYQ + 
Sbjct: 300 PTNQA--KKRSSTTISSDGICVQQPIAKR-----SRNGEQLR------IFDLNSQYQIDF 346

Query: 337 ESGS-KAIDLNCKGL 350
           E GS +AIDLNC+G 
Sbjct: 347 EPGSTRAIDLNCQGF 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101365|ref|XP_002312250.1| predicted protein [Populus trichocarpa] gi|222852070|gb|EEE89617.1| predicted protein [Populus trichocarpa]

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 216/327 (66%), Positives = 238/327 (72%), Gaps = 35/327 (10%)

Query: 8   MNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQ 67
           MNLVLSTDAKPRLKWT ELHQRFV+AVN LGG DKATPKSLMRVMGIPGLTLYHLKSHLQ
Sbjct: 1   MNLVLSTDAKPRLKWTQELHQRFVEAVNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQ 60

Query: 68  KYRLGKSQHVEACIDN--KQVVEYKE--TQSSSDGHVNRNISDGTLNQLNESLQIAQALQ 123
            + L   Q +  C  N  KQ  ++    TQS+                 N S QIAQALQ
Sbjct: 61  AFSLQNDQ-INLCYYNAEKQDCDFIFLFTQSA---------------MFNRSFQIAQALQ 104

Query: 124 VQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQ 183
           +QMEVQRKLHEQIEVQRHLQLRIEAQGKYLQ+VLKKAQETLAGY+SSS G+ELAKAEL +
Sbjct: 105 MQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQTVLKKAQETLAGYNSSSMGIELAKAELCR 164

Query: 184 LVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQPVN 243
           LVSMV+ GCPSSS+SELTE G S LKD ER Q+R+T+CSMESSLTSSESSGRKE+ Q  N
Sbjct: 165 LVSMVNSGCPSSSISELTETGGSILKDIERTQMRNTVCSMESSLTSSESSGRKEDMQKEN 224

Query: 244 EIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKARSSNQASGRKRRESTISDGFPDEQQTA 303
           EI DT+  KSN    EL LMD  IHPQ+      SSNQ  G+KR  S ISDG   EQ  A
Sbjct: 225 EIHDTN--KSNTAFVELPLMD--IHPQENLLDNDSSNQ--GKKRSGSIISDGVSVEQPLA 278

Query: 304 KRLATQNEKYDDQLRNTGLVGRFDLNS 330
           +RL     K  DQLR    +G FDLNS
Sbjct: 279 RRL-----KNGDQLR----LGTFDLNS 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577381|ref|XP_003556805.1| PREDICTED: uncharacterized protein LOC100805252 [Glycine max]

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 209/346 (60%), Positives = 247/346 (71%), Gaps = 24/346 (6%)

Query: 3   LQNQNM-NLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYH 61
           +QNQ+M  LVLSTDAKPRLKWTPELHQRF +A+N LGG +KATPKSLMRVMGIPGLTLYH
Sbjct: 6   VQNQSMMRLVLSTDAKPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYH 65

Query: 62  LKSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQA 121
           LKSHLQKYRLGKSQ +E C DNKQ   Y E Q+S DGH ++ IS GT NQ+ ESL+IA+A
Sbjct: 66  LKSHLQKYRLGKSQPLETCSDNKQE-GYSEIQNS-DGHCSKEISIGTQNQMTESLKIAEA 123

Query: 122 LQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAEL 181
           LQ+QMEVQRKL+EQIEVQ+HLQLRIEAQGKYLQSVL KA E LA +SSS+ GVELAK EL
Sbjct: 124 LQMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLTKAHEALARHSSSTTGVELAKFEL 183

Query: 182 SQLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQP 241
           S LVS+++  CPSS +SELTE    SL   ERKQ R T+CS+ESSLTSSESS   E++  
Sbjct: 184 SLLVSIINNACPSSPISELTETRGLSLNCGERKQDRGTMCSLESSLTSSESS---EQQHI 240

Query: 242 VNEIGDTDTCKSNKTTPELQLMDIHIHPQD-KPFKARSSNQASGRKRRESTISDGFPDEQ 300
           ++E  +    K +  + EL L  I IHP + K FK  +S    GRKR   T SD   D+ 
Sbjct: 241 MDEAENPQ--KFDGVSVELPL--ISIHPAEVKAFKGDTS--VDGRKRSAETDSDHCVDQP 294

Query: 301 QTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESESGSKAIDLN 346
              K+           LR + +    DLNSQYQ + +S  K IDLN
Sbjct: 295 CGNKK-----------LRKSEVSQMLDLNSQYQRDIDSSVKEIDLN 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521672|ref|XP_003529477.1| PREDICTED: uncharacterized protein LOC100776601 [Glycine max]

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 206/350 (58%), Positives = 243/350 (69%), Gaps = 28/350 (8%)

Query: 1   MGLQN-QN---MNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPG 56
           M LQN QN   M LVLSTDAKPRLKWTPELHQRF +A+N LGG ++ATPKSLMRVMGIPG
Sbjct: 1   MDLQNVQNHSMMRLVLSTDAKPRLKWTPELHQRFTEAINQLGGAERATPKSLMRVMGIPG 60

Query: 57  LTLYHLKSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQLNESL 116
           LTLYHLKSHLQKYRLGKSQ +E C DNKQ   Y E Q+S DGH ++ IS GT NQ+ ESL
Sbjct: 61  LTLYHLKSHLQKYRLGKSQPLETCSDNKQQ-GYCEIQNS-DGHFSKEISIGTQNQMTESL 118

Query: 117 QIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVEL 176
           +IA+ALQ+QMEVQRKL+EQIEVQ+HLQ RIEAQGKYLQSVL KA E LA +SSS+ G+EL
Sbjct: 119 KIAEALQMQMEVQRKLNEQIEVQKHLQRRIEAQGKYLQSVLTKAHEALARHSSSTTGMEL 178

Query: 177 AKAELSQLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRK 236
           AKAEL QL S+++  CP S +SELTE    SL   ERKQ R T+CS+ESSLTSSESS + 
Sbjct: 179 AKAELYQLESIINNACPDSPLSELTETRGLSLNCGERKQDRGTMCSLESSLTSSESSEQH 238

Query: 237 EEKQPVNEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKARSSNQASGRKRRESTISDGF 296
              +  N        K N  + EL LM IH   +DK FK  +S+   GRKR  +T SD  
Sbjct: 239 TMDEAENPQ------KFNGVSVELPLMSIHPE-EDKAFKGDTSD---GRKRSAATDSDHC 288

Query: 297 PDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESESGSKAIDLN 346
            D            +   ++LR + +    DLN QYQ + +S  K IDLN
Sbjct: 289 VD------------QPCGNKLRKSEVSEMLDLNCQYQRDIDSSVKEIDLN 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.537	0.569	0.643	3.4e-61
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.929	0.842	0.425	1.4e-55
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.535	0.475	0.612	2.6e-54
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.546	0.661	0.530	7.7e-48
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.512	0.614	0.541	3e-46
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.425	0.424	0.582	1e-43
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.425	0.646	0.518	6.3e-37
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.383	0.479	0.536	1.5e-35
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.431	0.583	0.468	7.4e-34
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.532	0.460	0.394	2.3e-32

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 130/202 (64%), Positives = 160/202 (79%)

Query:     8 MNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQ 67
             M+LVLSTDAKPRLKWT +LH +F++AVN LGGP+KATPK LM+VM IPGLTLYHLKSHLQ
Sbjct:    25 MSLVLSTDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQ 84

Query:    68 KYRLGKSQHVEACIDNKQVV----EYKETQSSSDGHVNR--NISDGTLNQLNE-SLQIAQ 120
             KYRLGKS   +   DNK  V    E +E +S +D    R  ++++   N   +  LQI +
Sbjct:    85 KYRLGKSMKFD---DNKLEVSSASENQEVESKNDSRDLRGCSVTEENSNPAKDRGLQITE 141

Query:   121 ALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAE 180
             ALQ+QMEVQ+KLHEQIEVQRHLQ++IEAQGKYLQSVL KAQ+TLAGYSSS+ G++ A+ E
Sbjct:   142 ALQMQMEVQKKLHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQTLAGYSSSNLGMDFARTE 201

Query:   181 LSQLVSMVSMGCPSSSVSELTE 202
             LS+L SMV+ GCPS+S SELT+
Sbjct:   202 LSRLASMVNRGCPSTSFSELTQ 223

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 152/357 (42%), Positives = 204/357 (57%)

Query:    10 LVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69
             L+LSTDAKPRLKWTP+LH+RF++AVN LGG DKATPK++M+VMGIPGLTLYHLKSHLQKY
Sbjct:    38 LILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKY 97

Query:    70 RLGKSQHVEACID-NKQ--VVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQALQVQM 126
             RL K+ + +A    NK   +   +E    +D   + N+S G   Q N++  I +ALQ+Q+
Sbjct:    98 RLSKNLNGQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGP--QPNKNSPIGEALQMQI 155

Query:   127 EVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVS 186
             EVQR+LHEQ+EVQRHLQLRIEAQGKYLQSVL+KAQETL   +  +AG+E AK +LS+LVS
Sbjct:   156 EVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGAAGIEAAKVQLSELVS 215

Query:   187 MVSMGCPSSSVSELTEAGTSSLKDFERKQIRXXXXXXXXXXXXXXXXGRKEEKQPVNE-- 244
              VS   P+SS  E  E    +L   ++ Q                   +K  K   N   
Sbjct:   216 KVSAEYPNSSFLEPKEL--QNLCS-QQMQTNYPPDCSLESCLTSSEGTQKNSKMLENNRL 272

Query:   245 -----IGD-TDTCKSNKTTPELQLMDIHIHP--QDKPFKARSSNQASGR----KRRESTI 292
                  IGD T   K     P  Q M++      +  P+ +   ++A  R    +R    +
Sbjct:   273 GLRTYIGDSTSEQKEIMEEPLFQRMELTWTEGLRGNPYLSTMVSEAEQRISYSERSPGRL 332

Query:   293 SDGFPDEQQTAKRLATQNEKYDDQLRNT-GL--VGRFDLNSQYQNESESGSKAIDLN 346
             S G       ++     NE +  + RN  G+      DLN+  +N   + +K  DLN
Sbjct:   333 SIGVGLHGHKSQHQQGNNEDHKLETRNRKGMDSTTELDLNTHVENYCTTRTKQFDLN 389

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 120/196 (61%), Positives = 147/196 (75%)

Query:    10 LVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69
             L+LSTDAKPRLKWTP+LH+RFV+AVN LGG DKATPK++M+VMGIPGLTLYHLKSHLQKY
Sbjct:    38 LILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKY 97

Query:    70 RLGKSQHVEACID-NKQVVE--YKETQSSSDGHVNRNISDGTLNQLNESLQIAQALQVQM 126
             RL K+ + +A    NK  V    +E     D   + ++S G    +N  L I+ ALQ+Q+
Sbjct:    98 RLSKNLNGQANSSLNKTSVMTMVEENPPEVDESHSESLSIGPQPSMN--LPISDALQMQI 155

Query:   127 EVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVS 186
             EVQR+LHEQ+EVQRHLQLRIEAQGKYLQS+L+KAQETL   +  +AG+E  KA+LS+LVS
Sbjct:   156 EVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGRQNLGAAGIEATKAQLSELVS 215

Query:   187 MVSMGCPSSSVSELTE 202
              VS   P SS  E  E
Sbjct:   216 KVSADYPDSSFLEPKE 231

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 112/211 (53%), Positives = 146/211 (69%)

Query:    10 LVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69
             LVL+TD KPRL+WT ELH+RFVDAV  LGGPDKATPK++MR MG+ GLTLYHLKSHLQK+
Sbjct:    30 LVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKF 89

Query:    70 RLGKSQHVEACIDNKQ----VVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQALQVQ 125
             RLG+ Q  +  IDN +    V E ++T SSS   +          + NES Q+ +AL+ Q
Sbjct:    90 RLGR-QSCKESIDNSKDVSCVAESQDTGSSSTSSLRL-----AAQEQNESYQVTEALRAQ 143

Query:   126 MEVQRKLHEQIE---VQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELS 182
             MEVQR+LHEQ+E   VQR LQLRIEAQGKYLQS+L+KA + +   + + AG+E A+ ELS
Sbjct:   144 MEVQRRLHEQLEYTQVQRRLQLRIEAQGKYLQSILEKACKAIEEQAVAFAGLEAAREELS 203

Query:   183 QLVSMVSM--GCP-SSSVSELTEAGTSSLKD 210
             +L    S+  GC  ++S  + T+    SL +
Sbjct:   204 ELAIKASITNGCQGTTSTFDTTKMMIPSLSE 234

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 105/194 (54%), Positives = 136/194 (70%)

Query:    10 LVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69
             LVL+TD KPRL+WT ELH+RFVDAV  LGGPDKATPK++MR MG+ GLTLYHLKSHLQK+
Sbjct:    34 LVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKF 93

Query:    70 RLGKSQHVEACIDNKQ---VVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQALQVQM 126
             RLG+    E+  ++K    V E ++T SSS   +          + NE  Q+ +AL+ QM
Sbjct:    94 RLGRQAGKESTENSKDASCVGESQDTGSSSTSSMRM-----AQQEQNEGYQVTEALRAQM 148

Query:   127 EVQRKLHEQIE---VQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQ 183
             EVQR+LH+Q+E   VQR LQLRIEAQGKYLQS+L+KA +     +++ AG+E A+ ELS+
Sbjct:   149 EVQRRLHDQLEYGQVQRRLQLRIEAQGKYLQSILEKACKAFDEQAATFAGLEAAREELSE 208

Query:   184 LVSMVSMGCPSSSV 197
             L   VS     +SV
Sbjct:   209 LAIKVSNSSQGTSV 222

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 95/163 (58%), Positives = 124/163 (76%)

Query:    10 LVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69
             LVL+TD KPRL+WT ELH+RFVDAV  LGGPDKATPK++MRVMG+ GLTLYHLKSHLQK+
Sbjct:    27 LVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86

Query:    70 RLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQALQVQMEVQ 129
             RLGK  H E   D+      KE   +S   + RN++  +   ++ ++      ++QMEVQ
Sbjct:    87 RLGKQPHKEYG-DHST----KEGSRASAMDIQRNVASSS-GMMSRNMN-----EMQMEVQ 135

Query:   130 RKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSA 172
             R+LHEQ+EVQRHLQLRIEAQGKY+QS+L++A +TLAG + ++A
Sbjct:   136 RRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLAGENMAAA 178

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 83/160 (51%), Positives = 113/160 (70%)

Query:     5 NQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKS 64
             + +  LVL+TD KPRL+WT ELH+RFVDAV HLGGP+KATPK++MRVMG+ GLTLYHLKS
Sbjct:    11 DSSSGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKS 70

Query:    65 HLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQAL-Q 123
             HLQK+RLGK  H E    N  +   ++T  +S   + RN    T       L I + + +
Sbjct:    71 HLQKFRLGKQPHKEHS-QNHSIC-IRDTNRASMLDLRRNAVFTT-----SPLIIGRNMNE 123

Query:   124 VQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQET 163
             +QMEVQR++ E++ ++R +  RI AQGKY++S+L+KA ET
Sbjct:   124 MQMEVQRRIEEEVVIERQVNQRIAAQGKYMESMLEKACET 163

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 81/151 (53%), Positives = 111/151 (73%)

Query:    16 AKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ 75
             +K RL+WT ELH+RFVDAV  LGGPD+ATPK ++RVMG+ GLT+YH+KSHLQKYRL K  
Sbjct:    14 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK-- 71

Query:    76 HVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQALQVQMEVQRKLHEQ 135
             ++    D+    E K+T     G +   + DG+       +QI +AL++QMEVQ++LHEQ
Sbjct:    72 YLP---DSSS--EGKKTDKKESGDMLSGL-DGS-----SGMQITEALKLQMEVQKRLHEQ 120

Query:   136 IEVQRHLQLRIEAQGKYLQSVLKKAQETLAG 166
             +EVQR LQLRIEAQGKYL+ ++++ Q+ L+G
Sbjct:   121 LEVQRQLQLRIEAQGKYLKKIIEE-QQRLSG 150

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 74/158 (46%), Positives = 111/158 (70%)

Query:    11 VLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70
             +++ D KPRL+WT +LH RFVDAV  LGG DKATPKS++++MG+ GLTLYHLKSHLQKYR
Sbjct:     1 MMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYR 60

Query:    71 LGKSQHVEA--CIDNKQVV--EYKETQSSSDGHVNRNISDGTLNQLNESLQIAQALQVQM 126
             LG+ Q  +      NK+     Y    + S G ++ +       + + ++  A+A++ Q+
Sbjct:    61 LGQQQGKKQNRTEQNKENAGSSYVHFDNCSQGGISNDSRFDNHQRQSGNVPFAEAMRHQV 120

Query:   127 EVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETL 164
             + Q++  EQ+EVQ+ LQ+R+EAQGKYL ++L+KAQ++L
Sbjct:   121 DAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSL 158

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 82/208 (39%), Positives = 133/208 (63%)

Query:     3 LQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHL 62
             L  +N +  ++T +K R++WTPELH+ FV+AVN LGG ++ATPK++++++  PGLT+YH+
Sbjct:   218 LSGRNSSSSVAT-SKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHV 276

Query:    63 KSHLQKYRLGKSQHVEACIDNKQVV-EYKETQSSSDGHVNRNISDGTLNQLNESLQIAQA 121
             KSHLQKYR  + +      +  +V  E +E + +S       I D     +  S++I QA
Sbjct:   277 KSHLQKYRTARYKP-----ETSEVTGEPQEKKMTS-------IEDIKSLDMKTSVEITQA 324

Query:   122 LQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAEL 181
             L++QMEVQ++LHEQ+E+QR LQL+IE QG+YLQ + +K Q+     SSSS   E +  + 
Sbjct:   325 LRLQMEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQDNKSSSS---EASPKQC 381

Query:   182 SQLVSMVSMGCPSSSVSELTEAGTSSLK 209
             +   + V +G  + +  +  E+ ++S K
Sbjct:   382 NGSFAEVEVGLETLT-GDQNESASASRK 408

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24	0.691
3rd Layer	3.4.24.57	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036947001 SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (328 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	357
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	1e-22
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	3e-20
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	6e-10
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-07

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 89.4 bits (222), Expect = 1e-22
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query: 17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGK 73
          KPR+ WT +LH RF+ AV  LGGPD ATPK ++ +M + GLT   + SHLQKYRL +
Sbjct: 1  KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 82.7 bits (205), Expect = 3e-20
 Identities = 37/51 (72%), Positives = 48/51 (94%)

Query: 115 SLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLA 165
            +QI +AL++QMEVQR+LHEQ+EVQRHLQ+RIEAQGKYLQ +L+KAQ+TL+
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 60.2 bits (145), Expect = 6e-10
 Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 17  KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70
           K ++ WTPELH+RFV AV  LG  +KA P  ++ +MG+  LT +++ SHLQKYR
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70
          R  WTPE  +  ++AV   G  +      + + +  PG T    K+    Y 
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHL--PGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.92
PLN03162	526	golden-2 like transcription factor; Provisional	99.88
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.85
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.25
smart00426	68	TEA TEA domain.	86.88

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.92  E-value=2.8e-25  Score=165.76  Aligned_cols=51  Identities=75%  Similarity=1.067  Sum_probs=48.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 018383          115 SLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLA  165 (357)
Q Consensus       115 ~~qi~EALr~QmEVQrrLhEQLEVQRhLQLRIEAQGKYLqsiLEKAqe~La  165 (357)
                      +++|+|||++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999999999999999999999999864

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.88  E-value=1.8e-23  Score=206.64  Aligned_cols=64  Identities=44%  Similarity=0.766  Sum_probs=59.9

Q ss_pred             cCCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhhccccchh
Q 018383           14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVE   78 (357)
Q Consensus        14 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl~~~~~~~   78 (357)
                      ..+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.+++...
T Consensus       232 g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~  295 (526)
T PLN03162        232 GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAA  295 (526)
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccc
Confidence            3689999999999999999999999 799999999999999999999999999999999875543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.85  E-value=1.5e-21  Score=147.61  Aligned_cols=56  Identities=57%  Similarity=0.974  Sum_probs=54.5

Q ss_pred             CCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhhc
Q 018383           17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG   72 (357)
Q Consensus        17 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl~   72 (357)
                      |+|++||+|+|.+|++||..||+.+.||||.|+++|++++||..+|+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            79999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.25  E-value=0.00066  Score=48.55  Aligned_cols=48  Identities=27%  Similarity=0.368  Sum_probs=41.3

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhh
Q 018383           19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR   70 (357)
Q Consensus        19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYR   70 (357)
                      |..||++=+..|++||.++|..   .-+.|-+.|+ .|-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            5689999999999999999931   4789999999 8999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=86.88  E-value=0.75  Score=37.04  Aligned_cols=18  Identities=28%  Similarity=0.702  Sum_probs=16.4

Q ss_pred             ccChHHHHHHHHHHHHhC
Q 018383           21 KWTPELHQRFVDAVNHLG   38 (357)
Q Consensus        21 rWT~ELH~rFV~AV~qLG   38 (357)
                      .|.++|-..|++|+...-
T Consensus         5 vWp~~lE~Af~~aL~~~~   22 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP   22 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC
Confidence            699999999999999774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	357
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		6e-08

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG 72
          +   KPR+ WT ELH +F+ AV+HL G ++A PK ++ +M +  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	357
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	2e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 93.8 bits (233), Expect = 2e-24
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG 72
          +   KPR+ WT ELH +F+ AV+HLG  ++A PK ++ +M +  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 73 KSQ 75
            +
Sbjct: 60 LKK 62

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 47/321 (14%), Positives = 107/321 (33%), Gaps = 83/321 (25%)

Query: 61  HLKSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQLNESLQIAQ 120
           H   H   +  G+ Q+       K ++   E     +    +++ D   + L++      
Sbjct: 1   HHHHHHMDFETGEHQY-----QYKDILSVFEDAFVDNFDC-KDVQDMPKSILSKE----- 49

Query: 121 ALQVQMEVQRKLHEQIEVQRHLQL--RIEAQGK-----YLQSVLKKAQETLAG-----YS 168
                 E+   +  +  V   L+L   + ++ +     +++ VL+   + L         
Sbjct: 50  ------EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 169 SSSAGVELAKAELSQLVSMVSMGCPSS-----SVSELTEAGTSSLKDFERKQIRS----T 219
             S    +   +  +L +   +    +        +L +A    L      ++R      
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA----LL-----ELRPAKNVL 154

Query: 220 ICSM----ESSLTSSESSGRKEEKQPVNEI-----GDTDTCKSNKTTPE-LQLMDIHIHP 269
           I  +    ++ +        K + +   +I          C S +T  E LQ +   I  
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK---NCNSPETVLEMLQKLLYQI-- 209

Query: 270 QDKPFKARSSNQASGRKRRESTISDGFPDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLN 329
            D  + +RS + ++ + R  S          Q   R   +++ Y++ L    LV   ++ 
Sbjct: 210 -DPNWTSRSDHSSNIKLRIHSI---------QAELRRLLKSKPYENCL----LVLL-NVQ 254

Query: 330 SQYQNESESGSKAIDLNCKGL 350
           +           A +L+CK L
Sbjct: 255 N------AKAWNAFNLSCKIL 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	357
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	87.93
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	85.49
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	83.06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	80.76
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	80.67

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=2.6e-29  Score=193.52  Aligned_cols=62  Identities=42%  Similarity=0.792  Sum_probs=59.0

Q ss_pred             ccCCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhhcccc
Q 018383           13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ   75 (357)
Q Consensus        13 S~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl~~~~   75 (357)
                      |+++|||++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+...+
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999 799999999999999999999999999999998654

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.93  E-value=1.1  Score=33.66  Aligned_cols=57  Identities=16%  Similarity=0.274  Sum_probs=42.5

Q ss_pred             CCCCccccChHHHHHHHHHHHHhCCCCCCCc---hhHHhhhCCCCccHHhHHHhhhhhhhccc
Q 018383           15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATP---KSLMRVMGIPGLTLYHLKSHLQKYRLGKS   74 (357)
Q Consensus        15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtP---K~IL~lM~v~GLT~~hVKSHLQKYRl~~~   74 (357)
                      +...+-.||+|=+.+|++||..+| .+...|   +.|-+.|  +|=|-.+|+.|.++|-....
T Consensus         4 p~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            4 GSSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHHH
Confidence            445566899999999999999999 222222   3455554  68999999999999976543

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=85.49  E-value=1.8  Score=32.38  Aligned_cols=53  Identities=23%  Similarity=0.337  Sum_probs=42.4

Q ss_pred             CCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhhcc
Q 018383           15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGK   73 (357)
Q Consensus        15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl~~   73 (357)
                      +...+-.||+|=++.|+++|..+|-    .=..|-+.  ++|=|-.+|+.|.++|-...
T Consensus         5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence            4456778999999999999999993    33566665  47899999999999885543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=83.06  E-value=2.2  Score=33.11  Aligned_cols=47  Identities=13%  Similarity=0.144  Sum_probs=39.0

Q ss_pred             CccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhh
Q 018383           18 PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR   70 (357)
Q Consensus        18 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYR   70 (357)
                      .+-.||+|=+.+|++||..+|+-    =+.|-+.|+  +=|..+++.|.++|-
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v~--~RT~~qcr~r~~~~~   63 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYKDD----WNKVSEHVG--SRTQDECILHFLRLP   63 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHHS--SCCHHHHHHHHTTSC
T ss_pred             cCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHcC--CCCHHHHHHHHHHhc
Confidence            36789999999999999999942    367777764  789999999999773

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=80.76  E-value=1.5  Score=31.86  Aligned_cols=51  Identities=22%  Similarity=0.242  Sum_probs=40.5

Q ss_pred             CCCCccccChHHHHHHHHHHHHhC-CCCCCCchhHHhhhCCCCccHHhHHHhhhhhhh
Q 018383           15 DAKPRLKWTPELHQRFVDAVNHLG-GPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL   71 (357)
Q Consensus        15 ~~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl   71 (357)
                      ..-.|-.||+|=..+|++||..+| +-    =+.|-+.|  +|=|-.+++.|.++|-.
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGN----WQDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTC----HHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCc----HHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            455667899999999999999999 32    35666666  67899999999887754

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=80.67  E-value=2.4  Score=34.07  Aligned_cols=58  Identities=26%  Similarity=0.355  Sum_probs=36.7

Q ss_pred             CCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhh---h-C-----------C--CCccHHhHHHhhhhhhhccc
Q 018383           15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRV---M-G-----------I--PGLTLYHLKSHLQKYRLGKS   74 (357)
Q Consensus        15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~l---M-~-----------v--~GLT~~hVKSHLQKYRl~~~   74 (357)
                      |++..-+|.++|-..|++|+...--....  |-+|..   | |           .  +-=|..+|.||||.-+-.+.
T Consensus         2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~   76 (82)
T 2hzd_A            2 DNDAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS   76 (82)
T ss_dssp             CGGGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred             CCCcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence            45667789999999999999977511122  222311   1 1           1  22366789999997665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	357
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	1e-22

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 87.7 bits (217), Expect = 1e-22
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG 72
          +   KPR+ WT ELH +F+ AV+HLG  ++A PK ++ +M +  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 73 KSQ 75
            +
Sbjct: 60 LKK 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	357
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	88.14
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	84.36

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=9.1e-27  Score=177.31  Aligned_cols=62  Identities=42%  Similarity=0.784  Sum_probs=58.3

Q ss_pred             ccCCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhhcccc
Q 018383           13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ   75 (357)
Q Consensus        13 S~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl~~~~   75 (357)
                      |.++|||++||+|||++||+||++||+ ++||||.|+++|+|+|||+.||+|||||||+...+
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            568999999999999999999999985 89999999999999999999999999999997654

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.14  E-value=0.14  Score=35.85  Aligned_cols=49  Identities=22%  Similarity=0.371  Sum_probs=39.5

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhhcc
Q 018383           19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGK   73 (357)
Q Consensus        19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl~~   73 (357)
                      ..+||+|=+..|++||..+|.    .=..|-..|  +|=|..+|++|.++|-...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~~   50 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNK   50 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence            468999999999999999994    244666665  5789999999999886543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.36  E-value=0.9  Score=30.35  Aligned_cols=44  Identities=23%  Similarity=0.283  Sum_probs=35.4

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhh
Q 018383           21 KWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY   69 (357)
Q Consensus        21 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKY   69 (357)
                      .||.+=+.+|++||...| ..  -=+.|-+.|+  |=|..+++.|.++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~~--nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-FG--NWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-TT--CHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-Cc--cHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            399999999999999998 11  2456767775  56899999999887