Citrus Sinensis ID: 018416

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEccHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHcccEEEcccEEEEEEEcccccEEEEEcccccEEEccEEEEccccccccHHHHHccccccccEEEccccccccccEEEccccccccccccccccEEccHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccEEEEEcccccEEEEcccccccEEEEEEEccEEEEEEEEcccHHHHHHHHHHHHcccccccHHHHHccccccHHHHccccccccccccccccccccccccccEEccccEEEEHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEEccccHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEccEEEEEEEccccEEEEEEEccccEEcccEEEEcccEEEccHHHcccccEEccEEcccccccccccEcccccEEEccccccccccEEEccccHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEEEEcccccEEEEEcccccccEEEEEccccEEEEEEEccccHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MALKLEefglsgsdaenvcyLRDLADANRLVNVMKScsggnavvigGGYIGMECAASLVINKInvtmvfpeahcmarlfTPKIASYYEEYYKskgvkfvkgtvlssfdvdsngkvVAVNlrdgnrlptdmvvvgigirpntslfegQLTLEKggikvtgrlqssnssvyavgdvaafplkllgetrrlEHVDSARKSAKHAVAAImepdktdkfdylpffysRVFTLSWQFYGDNVGEVVhygnfsgttfGAYWVNKGRlvgsfleggtKEEYEAIAKATRLQPVVEDLAELETQGLGFALAvsqkplpstpvdgktvpglvlgkslyplhaTAGVILAASIAAFAYWYGRRRRRW
Flexible Loop (DISEMBL)
malkleefglsgsdaenVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVlssfdvdsngkvvavnlrdgnrlptDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGrlqssnssvyavGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAimepdktdkfdYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVsqkplpstpvdGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Low Complexity Region (SEG)
MALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Disordered region (IsUnstruct)
**************AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH**********AVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQK*****PVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGR*****
Disordered Region (DISOPRED)
MALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGF*********************LVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRR*
Disordered Region (DISEMBL)
MALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE***********AVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Disordered Region (DISPRO)
*****EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
Q9LK94	488	Probable monodehydroascor	yes	no	0.997	0.727	0.733	1e-147
Q43497	433	Monodehydroascorbate redu	N/A	no	0.834	0.685	0.531	3e-89
Q93WJ8	435	Probable monodehydroascor	no	no	0.845	0.691	0.529	8e-89
Q40977	433	Monodehydroascorbate redu	N/A	no	0.837	0.688	0.508	1e-86
Q42711	434	Monodehydroascorbate redu	N/A	no	0.845	0.693	0.535	6e-86
Q9LFA3	434	Probable monodehydroascor	no	no	0.845	0.693	0.525	3e-84
Q9SR59	441	Probable monodehydroascor	no	no	0.837	0.675	0.513	4e-83
P92947	493	Monodehydroascorbate redu	no	no	0.825	0.596	0.428	5e-66
P83966	166	Monodehydroascorbate redu	N/A	no	0.398	0.855	0.459	4e-34
P16640	422	Putidaredoxin reductase O	yes	no	0.685	0.578	0.306	5e-27

>sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1

 Score =  522 bits (1345), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 267/364 (73%), Positives = 306/364 (84%), Gaps = 9/364 (2%)

Query: 2   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 61
           ALKLEEFG+ GSDAENVCYLRDLADANRL  V++S S GNAVVIGGGYIGMECAASLVIN
Sbjct: 125 ALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVIN 184

Query: 62  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121
           KINVTMVFPEAHCMARLFTPKIAS YE+YY++KGVKF+KGTVL+SF+ DSN KV AVNL+
Sbjct: 185 KINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLK 244

Query: 122 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
           DG+ LP D+VVVGIGIRPNTSLFEGQLT+EKGGIKV  R+QSS+SSVYA+GDVA FP+KL
Sbjct: 245 DGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKL 304

Query: 182 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 241
            GE RRLEHVDSARKSA+HAV+AIM+P KT  FDYLPFFYSRVF  SWQFYGD  G+VVH
Sbjct: 305 FGEMRRLEHVDSARKSARHAVSAIMDPIKTGDFDYLPFFYSRVFAFSWQFYGDPTGDVVH 364

Query: 242 YGNF-SGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVE-DLAELETQGLGF 299
           +G +  G +FGAYWV KG LVGSFLEGGTKEEYE I+KAT+L+P V  DL ELE +GLGF
Sbjct: 365 FGEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEELEREGLGF 424

Query: 300 A-LAVSQ------KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRR 352
           A   VSQ      K +PS  +  ++   +++ K LY  HA  GV++AAS+AAFA+WYGRR
Sbjct: 425 AHTVVSQQKVPEVKDIPSAEMVKQSASVVMIKKPLYVWHAATGVVVAASVAAFAFWYGRR 484

Query: 353 RRRW 356
           RRRW
Sbjct: 485 RRRW 488

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 4

>sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1

 Score =  328 bits (842), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 162/305 (53%), Positives = 214/305 (70%), Gaps = 8/305 (2%)

Query: 3   LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 62
           LKL +FG+ G+D++N+ YLR++ DA++LV  +K+   G AVV+GGGYIG+E +A L +N 
Sbjct: 127 LKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLELSAVLRLNN 186

Query: 63  INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 122
           I V MV+PE  CM RLFT  IA++YE YYK+KGV  +KGTV   FD   NG+V  V L+D
Sbjct: 187 IEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGEVKEVKLKD 246

Query: 123 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 182
           G  L  D+VVVG+G RP T+LF+GQ+  EKGGIK     ++S   VYAVGDVA FPLK+ 
Sbjct: 247 GRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGDVATFPLKMY 306

Query: 183 GETRRLEHVDSARKSAKHAVAAIMEPDK---TDKFDYLPFFYSRVFTLSWQFYGDNVGEV 239
            E RR+EHVD +RKSA+ AV AI   ++    D++DYLP+FYSR F LSWQFYGDNVGE 
Sbjct: 307 NEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFDLSWQFYGDNVGET 366

Query: 240 VHYG----NFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 295
           V +G    N +   FG YW+  G++VG+FLE G+ EE +AIAK  ++QP    L +L  +
Sbjct: 367 VLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAKVAKVQPPA-TLDQLAQE 425

Query: 296 GLGFA 300
           G+ FA
Sbjct: 426 GISFA 430

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1

 Score =  327 bits (838), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 163/308 (52%), Positives = 214/308 (69%), Gaps = 7/308 (2%)

Query: 3   LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 62
           ++L +FG+ G+DA+N+ YLR+L DA+ L   M++   G AVV+GGGYIG+E  A+L  N 
Sbjct: 128 IRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANN 187

Query: 63  INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 122
           ++VTMV+PE  CM RLFT  IAS+YE YY +KG+  VKGTV S F  +SNG+V  V L+D
Sbjct: 188 LDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKD 247

Query: 123 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 182
           G  L  D+V+VG+G RP  SLF+ Q+  EKGG+K  G  ++S   VYA+GDVA FP+KL 
Sbjct: 248 GRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLY 307

Query: 183 GETRRLEHVDSARKSAKHAVAAIM---EPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 239
            E RR+EHVD ARKSA+ AV AI    E +   ++DYLP+FYSR F LSWQFYGDNVGE 
Sbjct: 308 NEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDNVGES 367

Query: 240 VHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 295
           V +G+    +    FG+YW+ + ++VG+FLEGG+ EE  AIAK  R QP VE L  L  +
Sbjct: 368 VLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEVLSKE 427

Query: 296 GLGFALAV 303
           GL FA  +
Sbjct: 428 GLSFATNI 435

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1

 Score =  320 bits (819), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 155/305 (50%), Positives = 213/305 (69%), Gaps = 7/305 (2%)

Query: 3   LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 62
           ++L +FG+ G++A+N+ YLR++ DA++L   +K       VV+GGGYIG+E +A L +N 
Sbjct: 126 IRLTDFGVIGANAKNIFYLREVDDADKLYEAIKRKKNAKRVVVGGGYIGLELSAVLKLND 185

Query: 63  INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 122
           ++VTMV+PE  CM RLFT +IA++YE YY +KG+  +KGTV   F  +S+G+V  V L+D
Sbjct: 186 LDVTMVYPEPWCMPRLFTSEIAAFYEGYYANKGINIIKGTVAVGFTANSDGEVKEVKLKD 245

Query: 123 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 182
           G  L  D+V+VG+G RP  SLF+GQ+  + GGIK     ++S   VYAVGDVA FPLKL 
Sbjct: 246 GRVLEADIVIVGVGGRPQISLFKGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATFPLKLY 305

Query: 183 GETRRLEHVDSARKSAKHAVAAIMEPD---KTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 239
            + RR+EHVD ARKSA+ A  AI   D     +++DYLP+FYSR F LSWQFYGDNVGE 
Sbjct: 306 NDVRRVEHVDHARKSAEQAAKAIFAADVGKSVEEYDYLPYFYSRSFDLSWQFYGDNVGET 365

Query: 240 VHYGN----FSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 295
           V +G+     S   FG YW+ +G++VG+FLEGGT +E +AIAK  R +P VED+ +L  +
Sbjct: 366 VLFGDNDPASSKPKFGTYWIKEGKVVGAFLEGGTPDENKAIAKVARAKPAVEDVNQLAEE 425

Query: 296 GLGFA 300
           GL FA
Sbjct: 426 GLSFA 430

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1

 Score =  317 bits (813), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 165/308 (53%), Positives = 218/308 (70%), Gaps = 7/308 (2%)

Query: 3   LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 62
           +KL +FG+ G+DA+N+ YLR++ DA++LV  +K+   G  VV+GGGYIG+E  A+L IN 
Sbjct: 127 IKLSDFGVQGADAKNIFYLREIDDADQLVEAIKAKENGKVVVVGGGYIGLELGAALRINN 186

Query: 63  INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 122
            +V+MV+PE  CM RLFTP+IA++YE YY  KG+  +KGTV   F VD+NG+V  V L+D
Sbjct: 187 FDVSMVYPEPWCMPRLFTPEIAAFYEGYYAQKGITIIKGTVAVGFTVDTNGEVKEVKLKD 246

Query: 123 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 182
           G  L  D+VVVG+G RP TSLF+GQ+  EKGGIK     ++S   VYAVGDVA FPLKL 
Sbjct: 247 GRVLEADIVVVGVGARPLTSLFKGQIVEEKGGIKTDEFFKTSVPDVYAVGDVATFPLKLY 306

Query: 183 GETRRLEHVDSARKSAKHAVAAIM---EPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 239
            E RR+EHVD +RKSA+ AV AI    E    +++DYLP+FYSR F LSWQFYGDNVG+ 
Sbjct: 307 NELRRVEHVDHSRKSAEQAVKAIKASEEGKAIEEYDYLPYFYSRSFDLSWQFYGDNVGDA 366

Query: 240 VHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 295
           V +G+ S  +    FG+YW+  G++VG+FLE G+ EE +AIAK  R+QP VE    L  +
Sbjct: 367 VLFGDNSPDSATHKFGSYWIKDGKVVGAFLESGSPEENKAIAKVARIQPSVESSDLLLKE 426

Query: 296 GLGFALAV 303
           G+ FA  V
Sbjct: 427 GISFASKV 434

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LFA3|MDAR3_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1

 Score =  312 bits (799), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 162/308 (52%), Positives = 221/308 (71%), Gaps = 7/308 (2%)

Query: 3   LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 62
           L+L +FG+ G+D++N+ YLR++ DA++LV  +K+  GG AVV+GGGYIG+E +A L IN 
Sbjct: 127 LRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINN 186

Query: 63  INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 122
           ++VTMVFPE  CM RLFT  IA++YE YY +KGVK +KGTV S F    NG+V  V L+D
Sbjct: 187 LDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKD 246

Query: 123 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 182
           G  L  D+V+VG+G +P TSLF+GQ+  +KGGIK     ++S   VYAVGDVA FPLK+ 
Sbjct: 247 GRTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMY 306

Query: 183 GETRRLEHVDSARKSAKHAVAAIMEPD---KTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 239
           G+ RR+EHVD +RKSA+ AV AI   +     +++DYLPFFYSR F LSWQFYGDNVG+ 
Sbjct: 307 GDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYGDNVGDS 366

Query: 240 VHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 295
           V +G+ + +     FGAYWV  G++VG+F+EGG+ +E +A+AK  + +P  E L EL  Q
Sbjct: 367 VLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESLDELVKQ 426

Query: 296 GLGFALAV 303
           G+ FA  +
Sbjct: 427 GISFAAKI 434

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9SR59|MDAR1_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1

 Score =  308 bits (789), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 157/306 (51%), Positives = 209/306 (68%), Gaps = 8/306 (2%)

Query: 3   LKLEEFGLSGSDAENVCYLRDLADANRLVNVMK-SCSGGNAVVIGGGYIGMECAASLVIN 61
           ++L E G+  +D +N+ YLR++ D++ L   M+     G AV+IGGG++G+E +++L  N
Sbjct: 128 IRLSEIGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRAN 187

Query: 62  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121
              VTMVFPE   + R FT +IAS+YE YY +KG+K +KGTV + F  +S+G+V  V L 
Sbjct: 188 NHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLE 247

Query: 122 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
           DG  L  ++VV G+G RP TSLF+GQL  EKGGIK  G  ++S   VYA+GDVA FP+K+
Sbjct: 248 DGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKM 307

Query: 182 LGETRRLEHVDSARKSAKHAVAAIM--EPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGE 238
            G TRR+EH D+ARKSA  AV AI   E  KT   +DYLP+FYSR F LSW+FYG+NVGE
Sbjct: 308 YGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGENVGE 367

Query: 239 VVHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELET 294
            V +G+    +    FG YWV  G++VG FLEGGT+EE++AIAK  R QP VE L  L  
Sbjct: 368 SVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLDVLSE 427

Query: 295 QGLGFA 300
           +GL FA
Sbjct: 428 EGLSFA 433

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P92947|MDARP_ARATH Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3

 Score =  251 bits (642), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 132/308 (42%), Positives = 186/308 (60%), Gaps = 14/308 (4%)

Query: 12  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
           G     V Y+R++ADA+ L+  +        V++GGGYIGME AA+ V   ++ T+VFPE
Sbjct: 191 GGHLPGVHYIREVADADSLIASLGKAK--KIVIVGGGYIGMEVAAAAVAWNLDTTIVFPE 248

Query: 72  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
              + RLFTP +A  YEE Y+  GVKFVKG  +++ +  S+G+V AV L DG+ +  D V
Sbjct: 249 DQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEADTV 308

Query: 132 VVGIGIRPNTSLFEGQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE 189
           V+GIG +P    FE  L + K  GGI+V G  ++S   ++A+GDVAAFPLK+     R+E
Sbjct: 309 VIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVE 367

Query: 190 HVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLS-------WQFYGDNVGEVVHY 242
           HVD AR+SA+H V +++    TD +DYLP+FYSRVF          WQF+GDNVGE V  
Sbjct: 368 HVDHARRSAQHCVKSLLTA-HTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVEV 426

Query: 243 GNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALA 302
           GNF       +W+  GRL G  +E G+ EE++ + K  R QP+V+         +  AL 
Sbjct: 427 GNFD-PKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALE 485

Query: 303 VSQKPLPS 310
           ++Q  L S
Sbjct: 486 IAQAALQS 493

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P83966|MDARF_CUCSA Monodehydroascorbate reductase, fruit isozyme (Fragments) OS=Cucumis sativus PE=1 SV=1

 Score =  145 bits (367), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 107/183 (58%), Gaps = 41/183 (22%)

Query: 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVY 169
           D++  V A+ L+DG  L  D+VVVG+G RP  SLF                 ++S   VY
Sbjct: 23  DADQLVEAIKLKDGRTLDADIVVVGVGGRPLVSLF-----------------KTSIPDVY 65

Query: 170 AVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSW 229
           AVGDVA +PLKL  E RR+EHVD AR S              +++DYLP+FYSR F L+W
Sbjct: 66  AVGDVATYPLKLYNELRRVEHVDHARLS-------------IEEYDYLPYFYSRTFNLAW 112

Query: 230 QFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDL 289
           QFYGDNVGE V + +     FG YW+   ++VG FLEGGT +EY    K  R+QP VE L
Sbjct: 113 QFYGDNVGETVLFPD----NFGTYWI---KVVGVFLEGGTPDEY----KVARVQPPVESL 161

Query: 290 AEL 292
            +L
Sbjct: 162 DQL 164

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P16640|CAMA_PSEPU Putidaredoxin reductase OS=Pseudomonas putida GN=camA PE=1 SV=1

 Score =  122 bits (305), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 132/251 (52%), Gaps = 7/251 (2%)

Query: 15  AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74
           A N  YLR L DA  +   +   +    VVIGGGYIG+E AA+ +   ++VT++   A  
Sbjct: 127 ANNFRYLRTLEDAECIRRQL--IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV 184

Query: 75  MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVV 133
           + R+  P ++++YE  ++  GV    GT +  F++ ++  KV AV   DG RLP D+V+ 
Sbjct: 185 LERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIA 244

Query: 134 GIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 193
           GIG+ PN  L          GI +   +Q+S+  + AVGD A F  +L     R+E V +
Sbjct: 245 GIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPN 304

Query: 194 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFG 251
           A + A+  +AAI+   K  + +  P+F+S  + +  +  G + G   ++  G+ +   F 
Sbjct: 305 ALEQARK-IAAIL-CGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFS 362

Query: 252 AYWVNKGRLVG 262
            +++   R++ 
Sbjct: 363 VFYLQGDRVLA 373

The oxidation of camphor by cytochrome P450-CAM requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
225452428	478	PREDICTED: probable monodehydroascorbate	0.994	0.740	0.845	1e-176
224055551	478	predicted protein [Populus trichocarpa]	0.994	0.740	0.805	1e-170
356571330	478	PREDICTED: probable monodehydroascorbate	0.994	0.740	0.797	1e-166
449483761	480	PREDICTED: probable monodehydroascorbate	0.994	0.737	0.812	1e-165
449450093	480	PREDICTED: probable monodehydroascorbate	0.994	0.737	0.809	1e-165
255560882	478	monodehydroascorbate reductase, putative	0.957	0.713	0.800	1e-162
356558865	478	PREDICTED: probable monodehydroascorbate	0.994	0.740	0.805	1e-156
218117601	320	peroxisomal monodehydroascorbate reducta	0.898	1.0	0.794	1e-148
15232273	488	monodehydroascorbate reductase (NADH) [A	0.997	0.727	0.733	1e-146
297815040	488	ATMDAR4 [Arabidopsis lyrata subsp. lyrat	0.994	0.725	0.730	1e-144

>gi|225452428|ref|XP_002277200.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Vitis vinifera] gi|147795418|emb|CAN77104.1| hypothetical protein VITISV_018446 [Vitis vinifera] gi|296087650|emb|CBI34906.3| unnamed protein product [Vitis vinifera]

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 300/355 (84%), Positives = 327/355 (92%), Gaps = 1/355 (0%)

Query: 2   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 61
           AL+LEEFG++GSDAENVCYLRDLADA RLV+VMKSC+GGNAVVIGGGYIGMECAASLVIN
Sbjct: 125 ALQLEEFGVAGSDAENVCYLRDLADATRLVDVMKSCTGGNAVVIGGGYIGMECAASLVIN 184

Query: 62  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121
           KINVTMVFPEAHCMARLFTPKIASYYE+YYKSKGVKF+KGT LSSFD+D +GKV AV LR
Sbjct: 185 KINVTMVFPEAHCMARLFTPKIASYYEDYYKSKGVKFIKGTALSSFDIDDSGKVTAVTLR 244

Query: 122 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
           DGNRLP DMVVVGIGIRPNT LFEGQLTLEKGGIKV G +QSSNSSVYAVGDVAAFP+KL
Sbjct: 245 DGNRLPADMVVVGIGIRPNTGLFEGQLTLEKGGIKVNGWMQSSNSSVYAVGDVAAFPVKL 304

Query: 182 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 241
            GETRRLEHVDSARKSA+HAV AIMEP KT +FDYLPFFYSRVFTLSWQFYGD+VGEVVH
Sbjct: 305 FGETRRLEHVDSARKSARHAVTAIMEPAKTSEFDYLPFFYSRVFTLSWQFYGDSVGEVVH 364

Query: 242 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 301
           YG+FSG+TFGAYWV+KG+LVGSFLEGGTKEEYEAIAKAT+L+P VEDLAELE QGLGFAL
Sbjct: 365 YGDFSGSTFGAYWVSKGQLVGSFLEGGTKEEYEAIAKATKLKPDVEDLAELERQGLGFAL 424

Query: 302 AVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 356
           AVS+KP PS P +  +  GL L K +Y  HATAGVI+AAS+A FAYWYGR+RRRW
Sbjct: 425 AVSRKPPPSQPPEVSS-SGLNLQKPMYAWHATAGVIVAASVAVFAYWYGRKRRRW 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055551|ref|XP_002298535.1| predicted protein [Populus trichocarpa] gi|222845793|gb|EEE83340.1| predicted protein [Populus trichocarpa]

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 286/355 (80%), Positives = 320/355 (90%), Gaps = 1/355 (0%)

Query: 2   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 61
           ALKLEEFG+SGSDAENVCYLRDLADANR+V+VM+SC+ GNAVVIGGGYIGMECAASLV N
Sbjct: 125 ALKLEEFGVSGSDAENVCYLRDLADANRVVDVMQSCASGNAVVIGGGYIGMECAASLVTN 184

Query: 62  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121
           +INVTMVFPE HCMARLFTPKIASYYE YY SKGV+FVKGTVLSSF++D  GKV AVNLR
Sbjct: 185 RINVTMVFPEVHCMARLFTPKIASYYEGYYNSKGVRFVKGTVLSSFEIDPIGKVTAVNLR 244

Query: 122 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
           DG++LP DMVVVGIGIRPNTSLFEGQLTLEKGGIKV GR+Q+SN+SVYAVGDVAAFP+KL
Sbjct: 245 DGSQLPADMVVVGIGIRPNTSLFEGQLTLEKGGIKVNGRMQTSNTSVYAVGDVAAFPVKL 304

Query: 182 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 241
            GETRRLEHVDSARK+AKHAVAAIMEP+KTD+FDYLPFFYSR FT SWQFYGDN GEVVH
Sbjct: 305 FGETRRLEHVDSARKTAKHAVAAIMEPEKTDEFDYLPFFYSRFFTFSWQFYGDNAGEVVH 364

Query: 242 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 301
           +G++SG T GAYW++KG LVGSFLEGGTKEEYEA+AK TRL+P ++D+ ELE QGLGFA+
Sbjct: 365 FGDYSGNTIGAYWISKGHLVGSFLEGGTKEEYEALAKTTRLKPAIDDITELERQGLGFAV 424

Query: 302 AVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 356
            VS+KPL S P D  +   LVL + L+  HATAGVI AASIAAFAYWYG+RRRRW
Sbjct: 425 TVSKKPLTSPPAD-VSDSTLVLERPLFAWHATAGVITAASIAAFAYWYGKRRRRW 478

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571330|ref|XP_003553831.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Glycine max]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 283/355 (79%), Positives = 318/355 (89%), Gaps = 1/355 (0%)

Query: 2   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 61
           ALKLEEFG++GSDA NVCYLRD+ADANRLV+VM+SC GGNAVVIGGGYIGMECAASLVIN
Sbjct: 125 ALKLEEFGVTGSDAGNVCYLRDIADANRLVDVMQSCPGGNAVVIGGGYIGMECAASLVIN 184

Query: 62  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121
           KINVTMVFPE HCM RLFT KIA+YYEEYYKS+GV F+KGTVLSSFD DSNGKV AVNLR
Sbjct: 185 KINVTMVFPEEHCMGRLFTSKIANYYEEYYKSRGVNFIKGTVLSSFDFDSNGKVTAVNLR 244

Query: 122 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
           DG+ L  DMVVVGIGIRPNT LFEGQLTLEKGGIKV G LQSSNSSVYA+GDVAAFP+K 
Sbjct: 245 DGSTLSVDMVVVGIGIRPNTGLFEGQLTLEKGGIKVNGMLQSSNSSVYAIGDVAAFPVKA 304

Query: 182 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 241
           +GETRRLEHVDSARKSA+H V+AIMEP+KT +FDYLPFFYSR+FTLSWQFYGDNVGEVV+
Sbjct: 305 VGETRRLEHVDSARKSARHVVSAIMEPNKTREFDYLPFFYSRIFTLSWQFYGDNVGEVVY 364

Query: 242 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 301
           YG+ SG+TFGAYWV+K  LVG+FLEGGTKEEYEAIAKATRL+PV+EDL ELE QGL FA+
Sbjct: 365 YGDMSGSTFGAYWVSKDHLVGAFLEGGTKEEYEAIAKATRLRPVIEDLTELERQGLRFAV 424

Query: 302 AVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 356
            VS+KP+ S P++ +    L+L K LY  HATAGVI+AASIA FAY+YG++R RW
Sbjct: 425 TVSEKPMASPPIEVRA-SDLLLEKPLYAWHATAGVIIAASIAGFAYFYGKKRHRW 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483761|ref|XP_004156683.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2-like [Cucumis sativus]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/357 (81%), Positives = 321/357 (89%), Gaps = 3/357 (0%)

Query: 2   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 61
           ALKLEEFG++GSDAENVCYLRDL DANR V+VM SCSGGNAVVIGGGYIGMECAASLVIN
Sbjct: 125 ALKLEEFGVNGSDAENVCYLRDLNDANRAVDVMHSCSGGNAVVIGGGYIGMECAASLVIN 184

Query: 62  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121
           KINVTMVFPEA CM RLFTPKIAS+YE+YYKSKGV+FVKGTVLSSFD+DSNGKVVAVNLR
Sbjct: 185 KINVTMVFPEAQCMPRLFTPKIASFYEDYYKSKGVEFVKGTVLSSFDMDSNGKVVAVNLR 244

Query: 122 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
           DG RLP DMVVVGIGIRPNTSLFEGQLTLEKGGIKV G++QSSNSSVYAVGDVAAFP+K+
Sbjct: 245 DGKRLPVDMVVVGIGIRPNTSLFEGQLTLEKGGIKVNGKMQSSNSSVYAVGDVAAFPVKI 304

Query: 182 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 241
             ETRRLEHVDSARK A+HAVAAIMEP+KT  FDY+PFFYSR+F LSWQFYGDN+GEVV+
Sbjct: 305 FSETRRLEHVDSARKCARHAVAAIMEPEKTGDFDYVPFFYSRIFALSWQFYGDNIGEVVY 364

Query: 242 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 301
           +G+FSG TFGAYWVNKG LVGSFLEGGTKEEY AIA  T L+P +EDLAELE++GL +A+
Sbjct: 365 FGDFSGNTFGAYWVNKGHLVGSFLEGGTKEEYAAIAMVTSLKPAIEDLAELESRGLSYAM 424

Query: 302 AVSQKPLPS--TPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 356
           A+S++P P   T VD  + P LV+ K +Y  HATAGVILA SIAAFAYWYGRRRRRW
Sbjct: 425 AISREPPPPQVTNVD-VSGPSLVIEKPMYRWHATAGVILAGSIAAFAYWYGRRRRRW 480

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450093|ref|XP_004142798.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2-like [Cucumis sativus]

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 289/357 (80%), Positives = 320/357 (89%), Gaps = 3/357 (0%)

Query: 2   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 61
           ALKLEEFG++GSDAENVCYLRDL DANR V+VM SCSGGNAVVIGGGYIGMECAASLVIN
Sbjct: 125 ALKLEEFGVNGSDAENVCYLRDLNDANRAVDVMHSCSGGNAVVIGGGYIGMECAASLVIN 184

Query: 62  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121
           KINV MVFPEA CM RLFTPKIAS+YE+YYKSKGV+FVKGTVLSSFD+DSNGKVVAVNLR
Sbjct: 185 KINVAMVFPEAQCMPRLFTPKIASFYEDYYKSKGVEFVKGTVLSSFDMDSNGKVVAVNLR 244

Query: 122 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
           DG RLP DMVVVGIGIRPNTSLFEGQLTLEKGGIKV G++QSSNSSVYAVGDVAAFP+K+
Sbjct: 245 DGKRLPVDMVVVGIGIRPNTSLFEGQLTLEKGGIKVNGKMQSSNSSVYAVGDVAAFPVKI 304

Query: 182 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 241
             ETRRLEHVDSARK A+HAVAAIMEP+KT  FDY+PFFYSR+F LSWQFYGDN+GEVV+
Sbjct: 305 FSETRRLEHVDSARKCARHAVAAIMEPEKTGDFDYVPFFYSRIFALSWQFYGDNIGEVVY 364

Query: 242 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 301
           +G+FSG TFGAYWVNKG LVGSFLEGGTKEEY AIA  T L+P +EDLAELE++GL +A+
Sbjct: 365 FGDFSGNTFGAYWVNKGHLVGSFLEGGTKEEYAAIAMVTSLKPAIEDLAELESRGLSYAM 424

Query: 302 AVSQKPLPS--TPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 356
           A+S++P P   T VD  + P LV+ K +Y  HATAGVILA SIAAFAYWYGRRRRRW
Sbjct: 425 AISREPPPPQVTNVD-VSGPSLVIEKPMYRWHATAGVILAGSIAAFAYWYGRRRRRW 480

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560882|ref|XP_002521454.1| monodehydroascorbate reductase, putative [Ricinus communis] gi|223539353|gb|EEF40944.1| monodehydroascorbate reductase, putative [Ricinus communis]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/346 (80%), Positives = 315/346 (91%), Gaps = 5/346 (1%)

Query: 2   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 61
           ALKLEEFG++GS+AENVCYLRD+ADA+RLVNVM+SC+GGNAV+IGGGYIGMECAASL IN
Sbjct: 125 ALKLEEFGVNGSNAENVCYLRDVADADRLVNVMQSCTGGNAVIIGGGYIGMECAASLAIN 184

Query: 62  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121
           K+NVTMVFPEAHCMARLFTPKIASYYE+YYK KGV+F+KGTVLSS D+DSNGKV AVNLR
Sbjct: 185 KMNVTMVFPEAHCMARLFTPKIASYYEDYYKCKGVQFIKGTVLSSLDMDSNGKVTAVNLR 244

Query: 122 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
           DGNRLP D+VVVGIGIRPNTSLFEGQLTLEKGGIKV GR+Q+S +SVYAVGDVA+FP+KL
Sbjct: 245 DGNRLPADIVVVGIGIRPNTSLFEGQLTLEKGGIKVNGRMQTSITSVYAVGDVASFPVKL 304

Query: 182 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 241
            GETRRLEHVDSARKSA++AVAAIMEP+KT  FDYLPFFYSRVF LSWQFYGDN GEVVH
Sbjct: 305 FGETRRLEHVDSARKSARYAVAAIMEPNKTVDFDYLPFFYSRVFALSWQFYGDNAGEVVH 364

Query: 242 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 301
           +G++SG+T GAYWV+KG LVGSFLEGGTKEEYEAIAKATRL+P +ED ++LE QGLGFAL
Sbjct: 365 FGDYSGSTIGAYWVSKGHLVGSFLEGGTKEEYEAIAKATRLKPAIEDTSDLERQGLGFAL 424

Query: 302 AVSQKPLPSTPVD--GKTVPGLVLGKSLYPLHATAGVILAASIAAF 345
           AVS+ P+ S P D  G +   L+L + LY  HATAGV+LAAS+AAF
Sbjct: 425 AVSENPVTSPPGDVGGSS---LILERPLYAWHATAGVVLAASVAAF 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558865|ref|XP_003547723.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2-like [Glycine max]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/355 (80%), Positives = 316/355 (89%), Gaps = 1/355 (0%)

Query: 2   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 61
           ALKLEEFG+SGSDAENVCYLR +ADANRLV+VM+SC GGNAVVIGGGYIGMECAASLVIN
Sbjct: 125 ALKLEEFGVSGSDAENVCYLRHIADANRLVDVMQSCPGGNAVVIGGGYIGMECAASLVIN 184

Query: 62  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121
           KINVTMVFPE HCMARLFT KIA+YYEEYYKS+GV F+KGTVLSSFD DSNGKV AVNLR
Sbjct: 185 KINVTMVFPEEHCMARLFTSKIANYYEEYYKSRGVNFIKGTVLSSFDFDSNGKVTAVNLR 244

Query: 122 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
           DG  L  DMVVVGIGIRPNT LFEGQLTLEKGGIKV G LQSSNSSVYA+GDVAAFP+K 
Sbjct: 245 DGTTLSVDMVVVGIGIRPNTGLFEGQLTLEKGGIKVNGMLQSSNSSVYAIGDVAAFPVKA 304

Query: 182 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 241
            GETRRLEHVDSARKSA H V++IMEP+KT +FDY+PFFYSRVFTLSWQFYGDNVGEVV+
Sbjct: 305 FGETRRLEHVDSARKSAIHVVSSIMEPNKTGEFDYIPFFYSRVFTLSWQFYGDNVGEVVY 364

Query: 242 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 301
           YG+ SG+ FGAYWV+KG LVG+FLEGGTKEEYEAIAKATRL+P +EDL ELE QGL FA+
Sbjct: 365 YGDMSGSAFGAYWVSKGHLVGAFLEGGTKEEYEAIAKATRLRPAIEDLTELERQGLSFAV 424

Query: 302 AVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 356
            VSQKP+   PV+ +    L+L K LY  HATAGVI+AASIAAFAY+YG++RRRW
Sbjct: 425 TVSQKPVVPPPVEVRA-SDLLLEKPLYAWHATAGVIIAASIAAFAYFYGKKRRRW 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218117601|dbj|BAH03208.1| peroxisomal monodehydroascorbate reductase [Glycine max]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/321 (79%), Positives = 285/321 (88%), Gaps = 1/321 (0%)

Query: 36  SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG 95
           SC GGNAVVIGGGYIGMECAASLVINKINVTMVFPE HCMARLFT KIA+YYEEYYKS+G
Sbjct: 1   SCPGGNAVVIGGGYIGMECAASLVINKINVTMVFPEEHCMARLFTSKIANYYEEYYKSRG 60

Query: 96  VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGI 155
           V F+KGTVLSSFD DSNGKV AVNLRDG  L  DMVVVGIGIRPNT LFEGQLTLEKGGI
Sbjct: 61  VNFIKGTVLSSFDFDSNGKVTAVNLRDGTTLSVDMVVVGIGIRPNTGLFEGQLTLEKGGI 120

Query: 156 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFD 215
           KV G LQSSNSSVYA+GDVAAFP+K +GETRRLEHVDSARKSA+H V+AIMEP+KT +FD
Sbjct: 121 KVNGMLQSSNSSVYAIGDVAAFPVKAVGETRRLEHVDSARKSARHVVSAIMEPNKTREFD 180

Query: 216 YLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEA 275
           YLPFFYSR+FTLSWQFYGDNVGEVV+YG+ SG+TFGAYWV+K  LVG+FLEGGTKEEYEA
Sbjct: 181 YLPFFYSRIFTLSWQFYGDNVGEVVYYGDMSGSTFGAYWVSKDHLVGAFLEGGTKEEYEA 240

Query: 276 IAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAG 335
           IAKATRL+PV++DL ELE QGL FA+ VS+KP+ S P++ +    L+L K LY  HATAG
Sbjct: 241 IAKATRLRPVIKDLTELERQGLRFAVTVSEKPMASPPIEVRA-SDLLLEKPLYAWHATAG 299

Query: 336 VILAASIAAFAYWYGRRRRRW 356
           VI+AASIA FAY+YG++R RW
Sbjct: 300 VIIAASIAGFAYFYGKKRHRW 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232273|ref|NP_189420.1| monodehydroascorbate reductase (NADH) [Arabidopsis thaliana] gi|50401174|sp|Q9LK94.1|MDAR2_ARATH RecName: Full=Probable monodehydroascorbate reductase, cytoplasmic isoform 2; Short=MDAR 2 gi|11994487|dbj|BAB02528.1| cytosolic monodehydroascorbate reductase [Arabidopsis thaliana] gi|14532712|gb|AAK64157.1| putative monodehydroascorbate reductase [Arabidopsis thaliana] gi|22136780|gb|AAM91734.1| putative monodehydroascorbate reductase [Arabidopsis thaliana] gi|332643846|gb|AEE77367.1| monodehydroascorbate reductase (NADH) [Arabidopsis thaliana]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/364 (73%), Positives = 306/364 (84%), Gaps = 9/364 (2%)

Query: 2   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 61
           ALKLEEFG+ GSDAENVCYLRDLADANRL  V++S S GNAVVIGGGYIGMECAASLVIN
Sbjct: 125 ALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVIN 184

Query: 62  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121
           KINVTMVFPEAHCMARLFTPKIAS YE+YY++KGVKF+KGTVL+SF+ DSN KV AVNL+
Sbjct: 185 KINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLK 244

Query: 122 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
           DG+ LP D+VVVGIGIRPNTSLFEGQLT+EKGGIKV  R+QSS+SSVYA+GDVA FP+KL
Sbjct: 245 DGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKL 304

Query: 182 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 241
            GE RRLEHVDSARKSA+HAV+AIM+P KT  FDYLPFFYSRVF  SWQFYGD  G+VVH
Sbjct: 305 FGEMRRLEHVDSARKSARHAVSAIMDPIKTGDFDYLPFFYSRVFAFSWQFYGDPTGDVVH 364

Query: 242 YGNF-SGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVE-DLAELETQGLGF 299
           +G +  G +FGAYWV KG LVGSFLEGGTKEEYE I+KAT+L+P V  DL ELE +GLGF
Sbjct: 365 FGEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEELEREGLGF 424

Query: 300 A-LAVSQ------KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRR 352
           A   VSQ      K +PS  +  ++   +++ K LY  HA  GV++AAS+AAFA+WYGRR
Sbjct: 425 AHTVVSQQKVPEVKDIPSAEMVKQSASVVMIKKPLYVWHAATGVVVAASVAAFAFWYGRR 484

Query: 353 RRRW 356
           RRRW
Sbjct: 485 RRRW 488

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815040|ref|XP_002875403.1| ATMDAR4 [Arabidopsis lyrata subsp. lyrata] gi|297321241|gb|EFH51662.1| ATMDAR4 [Arabidopsis lyrata subsp. lyrata]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 265/363 (73%), Positives = 304/363 (83%), Gaps = 9/363 (2%)

Query: 3   LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 62
           LKLEEFG+ GSDAENVCYLRDLADANRL  V++S S GNAVVIGGGYIGMECAASLVINK
Sbjct: 126 LKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVINK 185

Query: 63  INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 122
           INVTMVFPEAHCMARLFTPKIAS YE+YY++KGVKFVKGTVL+SF+ DSN KV AVNL+D
Sbjct: 186 INVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFVKGTVLTSFEFDSNKKVTAVNLKD 245

Query: 123 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 182
           G+ L  D+VVVGIGIRPNTSLFEGQLT+EKGGIKV  R+QSS+SSVYA+GDVA FP+KL 
Sbjct: 246 GSHLSADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKLF 305

Query: 183 GETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY 242
           GE RRLEHVDSARKSA+HAV+AIM+P KT +FDYLPFFYSRVF  SWQFYGD  G+VVH+
Sbjct: 306 GEMRRLEHVDSARKSARHAVSAIMDPIKTGEFDYLPFFYSRVFAFSWQFYGDPTGDVVHF 365

Query: 243 GNFS-GTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVE-DLAELETQGLGFA 300
           G +  G +FGAYWV KG LVGSFLEGGTKEEYE I+KAT+L+P V  DL ELE +GL FA
Sbjct: 366 GEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEELEREGLRFA 425

Query: 301 -LAVSQ------KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRR 353
              VSQ      K +PS  +  ++   +++ K LY  HA  GV++AAS+AAFA+WYGRRR
Sbjct: 426 HTVVSQQKVPEVKDIPSAEMVRQSASVVMIKKPLYVWHAATGVVVAASVAAFAFWYGRRR 485

Query: 354 RRW 356
           RRW
Sbjct: 486 RRW 488

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
TAIR|locus:2086430	488	MDAR4 "monodehydroascorbate re	0.997	0.727	0.733	1.9e-140
TAIR|locus:2085176	466	MDAR1 "monodehydroascorbate re	0.845	0.645	0.525	2.7e-84
TAIR|locus:2144588	435	ATMDAR2 [Arabidopsis thaliana	0.837	0.685	0.534	5.8e-82
TAIR|locus:2100143	441	MDHAR "monodehydroascorbate re	0.837	0.675	0.513	1.3e-77
TAIR|locus:2195503	493	MDAR6 "monodehydroascorbate re	0.825	0.596	0.428	2.3e-62
UNIPROTKB|P95146	411	Rv1869c "Probable reductase" [	0.679	0.588	0.3	9.4e-27
TIGR_CMR|SPO_3737	403	SPO_3737 "pyridine nucleotide-	0.612	0.540	0.348	1.5e-26
UNIPROTKB|F1P4Q6	494	LOC427826 "Uncharacterized pro	0.617	0.445	0.323	1.2e-24
WB|WBGene00017640	549	F20D6.11 [Caenorhabditis elega	0.761	0.493	0.279	6e-23
UNIPROTKB|Q19655	549	F20D6.11 "Protein F20D6.11" [C	0.761	0.493	0.279	6e-23

TAIR|locus:2086430 MDAR4 "monodehydroascorbate reductase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1374 (488.7 bits), Expect = 1.9e-140, P = 1.9e-140
 Identities = 267/364 (73%), Positives = 306/364 (84%)

Query:     2 ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 61
             ALKLEEFG+ GSDAENVCYLRDLADANRL  V++S S GNAVVIGGGYIGMECAASLVIN
Sbjct:   125 ALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVIN 184

Query:    62 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121
             KINVTMVFPEAHCMARLFTPKIAS YE+YY++KGVKF+KGTVL+SF+ DSN KV AVNL+
Sbjct:   185 KINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLK 244

Query:   122 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
             DG+ LP D+VVVGIGIRPNTSLFEGQLT+EKGGIKV  R+QSS+SSVYA+GDVA FP+KL
Sbjct:   245 DGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKL 304

Query:   182 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 241
              GE RRLEHVDSARKSA+HAV+AIM+P KT  FDYLPFFYSRVF  SWQFYGD  G+VVH
Sbjct:   305 FGEMRRLEHVDSARKSARHAVSAIMDPIKTGDFDYLPFFYSRVFAFSWQFYGDPTGDVVH 364

Query:   242 YGNFS-GTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVE-DLAELETQGLGF 299
             +G +  G +FGAYWV KG LVGSFLEGGTKEEYE I+KAT+L+P V  DL ELE +GLGF
Sbjct:   365 FGEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEELEREGLGF 424

Query:   300 A-LAVSQ------KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRR 352
             A   VSQ      K +PS  +  ++   +++ K LY  HA  GV++AAS+AAFA+WYGRR
Sbjct:   425 AHTVVSQQKVPEVKDIPSAEMVKQSASVVMIKKPLYVWHAATGVVVAASVAAFAFWYGRR 484

Query:   353 RRRW 356
             RRRW
Sbjct:   485 RRRW 488

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IMP;IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;IMP;TAS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2085176 MDAR1 "monodehydroascorbate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
 Identities = 162/308 (52%), Positives = 221/308 (71%)

Query:     3 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 62
             L+L +FG+ G+D++N+ YLR++ DA++LV  +K+  GG AVV+GGGYIG+E +A L IN 
Sbjct:   159 LRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINN 218

Query:    63 INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 122
             ++VTMVFPE  CM RLFT  IA++YE YY +KGVK +KGTV S F    NG+V  V L+D
Sbjct:   219 LDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKD 278

Query:   123 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 182
             G  L  D+V+VG+G +P TSLF+GQ+  +KGGIK     ++S   VYAVGDVA FPLK+ 
Sbjct:   279 GRTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMY 338

Query:   183 GETRRLEHVDSARKSAKHAVAAIMEPD---KTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 239
             G+ RR+EHVD +RKSA+ AV AI   +     +++DYLPFFYSR F LSWQFYGDNVG+ 
Sbjct:   339 GDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYGDNVGDS 398

Query:   240 VHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 295
             V +G+ + +     FGAYWV  G++VG+F+EGG+ +E +A+AK  + +P  E L EL  Q
Sbjct:   399 VLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESLDELVKQ 458

Query:   296 GLGFALAV 303
             G+ FA  +
Sbjct:   459 GISFAAKI 466

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;TAS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2144588 ATMDAR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 163/305 (53%), Positives = 213/305 (69%)

Query:     3 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 62
             ++L +FG+ G+DA+N+ YLR+L DA+ L   M++   G AVV+GGGYIG+E  A+L  N 
Sbjct:   128 IRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANN 187

Query:    63 INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 122
             ++VTMV+PE  CM RLFT  IAS+YE YY +KG+  VKGTV S F  +SNG+V  V L+D
Sbjct:   188 LDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKD 247

Query:   123 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 182
             G  L  D+V+VG+G RP  SLF+ Q+  EKGG+K  G  ++S   VYA+GDVA FP+KL 
Sbjct:   248 GRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLY 307

Query:   183 GETRRLEHVDSARKSAKHAVAAIM---EPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 239
              E RR+EHVD ARKSA+ AV AI    E +   ++DYLP+FYSR F LSWQFYGDNVGE 
Sbjct:   308 NEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDNVGES 367

Query:   240 VHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 295
             V +G+    +    FG+YW+ + ++VG+FLEGG+ EE  AIAK  R QP VE L  L  +
Sbjct:   368 VLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEVLSKE 427

Query:   296 GLGFA 300
             GL FA
Sbjct:   428 GLSFA 432

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2100143 MDHAR "monodehydroascorbate reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 157/306 (51%), Positives = 209/306 (68%)

Query:     3 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-CSGGNAVVIGGGYIGMECAASLVIN 61
             ++L E G+  +D +N+ YLR++ D++ L   M+     G AV+IGGG++G+E +++L  N
Sbjct:   128 IRLSEIGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRAN 187

Query:    62 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121
                VTMVFPE   + R FT +IAS+YE YY +KG+K +KGTV + F  +S+G+V  V L 
Sbjct:   188 NHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLE 247

Query:   122 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
             DG  L  ++VV G+G RP TSLF+GQL  EKGGIK  G  ++S   VYA+GDVA FP+K+
Sbjct:   248 DGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKM 307

Query:   182 LGETRRLEHVDSARKSAKHAVAAIM--EPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGE 238
              G TRR+EH D+ARKSA  AV AI   E  KT   +DYLP+FYSR F LSW+FYG+NVGE
Sbjct:   308 YGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGENVGE 367

Query:   239 VVHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELET 294
              V +G+    +    FG YWV  G++VG FLEGGT+EE++AIAK  R QP VE L  L  
Sbjct:   368 SVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLDVLSE 427

Query:   295 QGLGFA 300
             +GL FA
Sbjct:   428 EGLSFA 433

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009610 "response to symbiotic fungus" evidence=IEP

GO:0043903 "regulation of symbiosis, encompassing mutualism through parasitism" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2195503 MDAR6 "monodehydroascorbate reductase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 132/308 (42%), Positives = 186/308 (60%)

Query:    12 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
             G     V Y+R++ADA+ L+  +        V++GGGYIGME AA+ V   ++ T+VFPE
Sbjct:   191 GGHLPGVHYIREVADADSLIASLGKAK--KIVIVGGGYIGMEVAAAAVAWNLDTTIVFPE 248

Query:    72 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
                + RLFTP +A  YEE Y+  GVKFVKG  +++ +  S+G+V AV L DG+ +  D V
Sbjct:   249 DQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEADTV 308

Query:   132 VVGIGIRPNTSLFEGQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE 189
             V+GIG +P    FE  L + K  GGI+V G  ++S   ++A+GDVAAFPLK+     R+E
Sbjct:   309 VIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVE 367

Query:   190 HVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLS-------WQFYGDNVGEVVHY 242
             HVD AR+SA+H V +++    TD +DYLP+FYSRVF          WQF+GDNVGE V  
Sbjct:   368 HVDHARRSAQHCVKSLLTAH-TDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVEV 426

Query:   243 GNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALA 302
             GNF       +W+  GRL G  +E G+ EE++ + K  R QP+V+         +  AL 
Sbjct:   427 GNFD-PKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALE 485

Query:   303 VSQKPLPS 310
             ++Q  L S
Sbjct:   486 IAQAALQS 493

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|P95146 Rv1869c "Probable reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 75/250 (30%), Positives = 128/250 (51%)

Query:    10 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
             + GSDA  V YLR   DA  L +V+    G +  V+G G+IG+E AAS     ++VT+V 
Sbjct:   119 IPGSDAAGVHYLRSYNDAVALNSVL--VQGSSLAVVGAGWIGLEVAASARQRGVDVTVVE 176

Query:    70 PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 129
                  +       +   + + ++ +GV     T L      ++GK   + +RDG+ +  D
Sbjct:   177 TAIQPLLAALGEAVGKVFADLHRDQGVDLRLQTQLEEITA-ADGKATGLKMRDGSTVAAD 235

Query:   130 MVVVGIGIRPNTSLFE-GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 188
              V+V +G +PN  L +   L + +GG+ V   L++S+  +YAVGD+AA    LLG   R 
Sbjct:   236 AVLVAVGAKPNVELAQQAGLAMGEGGVLVDASLRTSDPDIYAVGDIAAAEHPLLGTRVRT 295

Query:   189 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD--NVGEVVHYGNFS 246
             EH  +A K    A A ++   +  ++  LP+ ++  + L  ++ G   +   VV  GN +
Sbjct:   296 EHWANALKQPAVAAAGML--GRPGEYAELPYLFTDQYDLGMEYVGHAPSCDRVVFRGNVA 353

Query:   247 GTTFGAYWVN 256
             G  F ++W++
Sbjct:   354 GREFLSFWLD 363

GO:0005576 "extracellular region" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TIGR_CMR|SPO_3737 SPO_3737 "pyridine nucleotide-disulphide oxidoreductase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 79/227 (34%), Positives = 121/227 (53%)

Query:    12 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
             G D   V  +RDLAD + +   +    G  A+++GGGYIG+E AA      + VT+V   
Sbjct:   118 GGDLAGVHVVRDLADIDAMAPSVTE--GARALIVGGGYIGLEAAAVCAKRGVQVTLVEMA 175

Query:    72 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
                + R+  P+ ++Y+   +   GV   +G  L+   + + G+V    L DG+ LP D+V
Sbjct:   176 DRILQRVAAPETSAYFRALHTGHGVDIREGVGLTRL-IGAQGRVTGAVLTDGSELPVDLV 234

Query:   132 VVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH 190
             VVG+GI P T+L E   L LE G I+   + ++S+ S++A GD A+FP K  G   RLE 
Sbjct:   235 VVGVGIAPATALAEAAGLVLENG-IRTDAQGRTSDPSIWAAGDCASFPYK--GGRIRLES 291

Query:   191 VDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 237
             V +A   A+  VA  M+    D +   P+F+S  + +  Q  G N G
Sbjct:   292 VPNAIDQAE-TVAQNMQGAGKD-YVAQPWFWSDQYDVKLQIAGLNTG 336

GO:0008152 "metabolic process" evidence=ISS

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

UNIPROTKB|F1P4Q6 LOC427826 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 286 (105.7 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 74/229 (32%), Positives = 119/229 (51%)

Query:    12 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
             G+D +NVC+L+   DA++   V++  SG N V++G  +IGME AA L      +++V  +
Sbjct:   250 GADLQNVCHLQTPEDASK---VLELASGKNLVIVGASFIGMETAAFLSDKAAAISVVEKQ 306

Query:    72 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
                  +   P++     +  +SKGVKF     L       +GKV    L  G +LP D+V
Sbjct:   307 EFPFQKTLGPQVGGVVLKMLQSKGVKFYMKKELHELK-GKDGKVAEAILASGEKLPADVV 365

Query:   132 VVGIGIRPNTSLFEGQLTLE--KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL-GETRRL 188
             VVGIG+ PN++  +G    +   G I V  R+Q++  +V+A GDV +FP+ LL G+   +
Sbjct:   366 VVGIGVTPNSAFLKGTSIAKDNSGAILVDLRMQTNIPNVFAAGDVVSFPVALLNGDHSSI 425

Query:   189 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 237
              H   A   A  ++AA     K  +   +PFF++ +   S  + G   G
Sbjct:   426 HHQQVAE--AHGSIAAFNMLKKQKELHTVPFFWTTMLGRSIHYAGCGKG 472

GO:0005737 "cytoplasm" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

WB|WBGene00017640 F20D6.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 272 (100.8 bits), Expect = 6.0e-23, P = 6.0e-23
 Identities = 80/286 (27%), Positives = 142/286 (49%)

Query:    12 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
             GSD +N+CYLR + +AN + N+     G + V +G  +IGME A++L     +VT++   
Sbjct:   258 GSDLKNICYLRKVEEANIISNLHP---GKHVVCVGSSFIGMEVASALAEKAASVTVISNT 314

Query:    72 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
                +  +F   I       ++ KGVKF     + +   +  G+V  V L +G  L  D++
Sbjct:   315 PEPLP-VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVDLL 373

Query:   132 VVGIGIRPNTSLFEGQ-LTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG-ETRRL 188
             V GIG+ P T   EG  + L+ +G I+V  + +++ S ++A+GDV   PL L   ++  +
Sbjct:   374 VCGIGVTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINI 433

Query:   189 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGDNVGEVVHY--GNF 245
             +H  +A+   +H    I+   K      +P+F++  F     +F G N G    Y  G+ 
Sbjct:   434 QHFQTAQAHGQHLGYTIV--GKPQPGPIVPYFWTLFFFAFGLKFSGCNQGSTKEYTNGDP 491

Query:   246 SGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATR--LQPVVEDL 289
                TF  Y++ K ++V +   GG        A+  +  ++  ++DL
Sbjct:   492 ETGTFIRYFLKKDKVV-AVAAGGPSSVASQFAEIFKKGIEVTLKDL 536

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q19655 F20D6.11 "Protein F20D6.11" [Caenorhabditis elegans (taxid:6239)]

 Score = 272 (100.8 bits), Expect = 6.0e-23, P = 6.0e-23
 Identities = 80/286 (27%), Positives = 142/286 (49%)

Query:    12 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
             GSD +N+CYLR + +AN + N+     G + V +G  +IGME A++L     +VT++   
Sbjct:   258 GSDLKNICYLRKVEEANIISNLHP---GKHVVCVGSSFIGMEVASALAEKAASVTVISNT 314

Query:    72 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
                +  +F   I       ++ KGVKF     + +   +  G+V  V L +G  L  D++
Sbjct:   315 PEPLP-VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVDLL 373

Query:   132 VVGIGIRPNTSLFEGQ-LTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG-ETRRL 188
             V GIG+ P T   EG  + L+ +G I+V  + +++ S ++A+GDV   PL L   ++  +
Sbjct:   374 VCGIGVTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINI 433

Query:   189 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGDNVGEVVHY--GNF 245
             +H  +A+   +H    I+   K      +P+F++  F     +F G N G    Y  G+ 
Sbjct:   434 QHFQTAQAHGQHLGYTIV--GKPQPGPIVPYFWTLFFFAFGLKFSGCNQGSTKEYTNGDP 491

Query:   246 SGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATR--LQPVVEDL 289
                TF  Y++ K ++V +   GG        A+  +  ++  ++DL
Sbjct:   492 ETGTFIRYFLKKDKVV-AVAAGGPSSVASQFAEIFKKGIEVTLKDL 536

GO:0005739 "mitochondrion" evidence=ISS

GO:0051882 "mitochondrial depolarization" evidence=ISS

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=ISS

GO:0008635 "activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LK94	MDAR2_ARATH	1, ., 6, ., 5, ., 4	0.7335	0.9971	0.7274	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020720001	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_21, whole genome shotgun sequence); (478 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025312001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (609 aa)						•	•		0.905
	GSVIVG00015409001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (421 aa)						•	•		0.902
	GSVIVG00024455001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (246 aa)						•	•		0.900
	GSVIVG00036111001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (289 aa)						•			0.899
	GSVIVG00017414001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (575 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	9e-29
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	1e-25
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	3e-23
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	6e-22
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	2e-21
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	1e-18
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	9e-17
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	4e-16
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	5e-15
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	6e-13
TIGR02053	463	TIGR02053, MerA, mercuric reductase	6e-13
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	1e-12
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	1e-12
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	1e-11
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	1e-11
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	4e-11
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	6e-11
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	2e-10
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	9e-10
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	3e-09
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	5e-09
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	1e-08
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	3e-08
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	1e-07
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	2e-07
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	2e-07
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	1e-06
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	1e-06
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	1e-06
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	1e-06
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	3e-06
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	7e-06
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	9e-06
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	1e-05
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	1e-05
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	1e-05
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	2e-05
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	3e-05
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	3e-05
PRK13984	604	PRK13984, PRK13984, putative oxidoreductase; Provi	3e-05
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	4e-05
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	7e-05
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	9e-05
PRK10262	321	PRK10262, PRK10262, thioredoxin reductase; Provisi	1e-04
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	2e-04
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	4e-04
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	7e-04
PLN02507	499	PLN02507, PLN02507, glutathione reductase	0.001
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	0.001
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	0.003
TIGR01318	467	TIGR01318, gltD_gamma_fam, glutamate synthase smal	0.003
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	0.004

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  112 bits (282), Expect = 9e-29
 Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 5/166 (3%)

Query: 16  ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 75
             V  LR + D++ ++ +++       VV+GGGYIG+E AA+L      VT+V      +
Sbjct: 121 VEVATLRGVIDSDEILELLEL--PKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLL 178

Query: 76  ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 135
           AR    +I++   E  +   +      V+       +GKVV V L DG  L  D+V+V I
Sbjct: 179 ARAD-DEISAALLEKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAI 237

Query: 136 GIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 179
           G RPNT L E  G    E+G I V   L++S   +YA GDVA    
Sbjct: 238 GRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score =  106 bits (265), Expect = 1e-25
 Identities = 81/309 (26%), Positives = 113/309 (36%), Gaps = 26/309 (8%)

Query: 7   EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 66
                 SD E V  LR   DA  L    +     + VV+G G IG+E A +       VT
Sbjct: 106 PRPPPISDWEGVVTLRLREDAEALKGGAEP--PKDVVVVGAGPIGLEAAEAAAKRGKKVT 163

Query: 67  MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA-VNLRDGNR 125
           ++        +L  P++A    E  +  GV+ + GT +   +   N  VV  V   DG  
Sbjct: 164 LIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEE 223

Query: 126 LPTDMVVVGIGIRPNTSLFE---GQLTLEKGGIKVTGRLQSSNS-SVYAVGDVAAFPLKL 181
           +  D+V++G G RPN  L       L L  G + V  R  +S    VYA GDVA  P   
Sbjct: 224 IKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAE 283

Query: 182 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTL----SWQFYGDNVG 237
            G+  R+     A  + +  +AA            L    S V  L    +    G   G
Sbjct: 284 TGKGGRIALWAIAVAAGR--IAAENIAGALRIPGLLGTVISDVGDLCAASTGLTEGKERG 341

Query: 238 EVVHYGNFSGTTFGAYWVNKGRLVGSFLEG-------------GTKEEYEAIAKATRLQP 284
             V      G    A+      LVG  L G                +   A+A A  L  
Sbjct: 342 IDVVLVVSGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQELEVLKRIGALALAIGLGD 401

Query: 285 VVEDLAELE 293
            V +L  L+
Sbjct: 402 TVAELDALD 410

Length = 415

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 99.8 bits (249), Expect = 3e-23
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 9   GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMV 68
            + G + + V  LR+L D + +   +      N V+IGGGYIG+E A +L     NVT++
Sbjct: 107 NIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLI 166

Query: 69  FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT 128
                 + +LF  ++    EE  K   +       L+       G+        G     
Sbjct: 167 HRSERILNKLFDEEMNQIVEEELKKHEINL----RLNEEVDSIEGEERVKVFTSGGVYQA 222

Query: 129 DMVVVGIGIRPNTSLFE-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVA 175
           DMV++  GI+PN+ L +   L L E G I V  + Q+S  ++YA GDVA
Sbjct: 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVA 271

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score = 95.4 bits (237), Expect = 6e-22
 Identities = 70/273 (25%), Positives = 115/273 (42%), Gaps = 24/273 (8%)

Query: 1   MALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVI 60
                    L  +  E    LR   DA RL  V++     + V++G G IG+E AAS   
Sbjct: 108 TGAAARPLPLLDALGERCFTLRHAGDAARLREVLQP--ERSVVIVGAGTIGLELAASATQ 165

Query: 61  NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL 120
            +  VT++   A  M R   P +  Y  + ++  GV+ +    +       +G+ V + L
Sbjct: 166 RRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHV---VDGEKVELTL 222

Query: 121 RDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLK 180
           + G  L  D+V+ GIGI  N  L          GI +    ++ + +++A GDVA   L 
Sbjct: 223 QSGETLQADVVIYGIGISANDQLAREANLDTANGIVIDEACRTCDPAIFAGGDVAITRLD 282

Query: 181 LLGETRRLEHVDSARKSAKHAVAAIM--EPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE 238
             G   R E  ++A   A+ A AA++             P+F+S  ++ + QF GD  G+
Sbjct: 283 -NGALHRCESWENANNQAQIAAAAMLGLPLPLLPP----PWFWSDQYSDNLQFIGDMRGD 337

Query: 239 VVH------------YGNFSGTTFGAYWVNKGR 259
                          +   +G   GA  +N+GR
Sbjct: 338 DWLCRGNPETQKAIWFNLQNGVLIGAVTLNQGR 370

Length = 396

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 5/164 (3%)

Query: 14  DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 73
           + ENV  L+ + D   L  ++K     N V+IG G+IG+E   +      NV ++  E  
Sbjct: 124 NLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183

Query: 74  CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 133
            +   F  +I    EE  +  GV+      + S   +   + V     D      D+V+V
Sbjct: 184 ILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT---DKGEYEADVVIV 240

Query: 134 GIGIRPNTSLFEGQL--TLEKGGIKVTGRLQSSNSSVYAVGDVA 175
             G++PNT   E     TL+ G I V    ++S  ++YA GD A
Sbjct: 241 ATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCA 284

Length = 444

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 6/167 (3%)

Query: 12  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
           GSD   V   R + D   +++  ++     AVVIGGG +G+E A  L    + VT+V   
Sbjct: 120 GSDLPGVFVYRTIDDVEAMLDCARNKKK--AVVIGGGLLGLEAARGLKDLGMEVTVVHIA 177

Query: 72  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
              M R              +  G+K +      + ++    KV  V   DG  +P D+V
Sbjct: 178 PTLMERQLDRTAGRLLRRKLEDLGIKVLLEKN--TEEIVGEDKVEGVRFADGTEIPADLV 235

Query: 132 VVGIGIRPNTSLF-EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 177
           V+ +GIRPN  L  E  L + + GI V   +Q+S+  +YAVG+ A  
Sbjct: 236 VMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEH 281

Length = 793

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 80.3 bits (199), Expect = 9e-17
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 4/133 (3%)

Query: 44  VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 103
           V+GGG IG E A  L      VT+V   A  +A L  P+++S  +      GV  +  + 
Sbjct: 146 VVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQ 205

Query: 104 LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF-EGQLTLEKGGIKVTGRLQ 162
           L    ++     +   L  G  +  D V+   G+RPNT+L     L + + GI V   LQ
Sbjct: 206 LQG--LEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQ 262

Query: 163 SSNSSVYAVGDVA 175
           +S   +YA+GD A
Sbjct: 263 TSAPDIYALGDCA 275

Length = 377

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 78.8 bits (195), Expect = 4e-16
 Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 28/185 (15%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 100
           V++GGGYIG+E A   V   +   VT+V      +     P+I+    +  +  GVK + 
Sbjct: 177 VIVGGGYIGLEFA--SVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKGGVKILL 233

Query: 101 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEK-------- 152
            T +++ +   +G +V +   +G  +  D V+V IG +PNT      L LE         
Sbjct: 234 NTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT----DGLGLENAGVELDDR 289

Query: 153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTD 212
           G IKV  ++ ++   +YA+GDV   P+        L HV  A    + A   I    K  
Sbjct: 290 GFIKVDDQMTTNVPGIYAIGDVIGGPM--------LAHV--AMAEGRIAAENIAG-GKRT 338

Query: 213 KFDYL 217
             DY 
Sbjct: 339 PIDYR 343

Length = 454

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 75.3 bits (186), Expect = 5e-15
 Identities = 53/187 (28%), Positives = 76/187 (40%), Gaps = 33/187 (17%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY--------EEYYKSK 94
           V++GGG IG+E A+ L    + VT+V  EA         +I                K  
Sbjct: 184 VIVGGGVIGLEWASMLADFGVEVTVV--EA-------ADRILPTEDAELSKEVARLLKKL 234

Query: 95  GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS---LFEGQLT 149
           GV+ V G  +    +  +G V+ V   +G    L  D V+V +G RPNT    L    + 
Sbjct: 235 GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDID 294

Query: 150 LEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 209
           +E G I++    Q+    +YA+GDV   P         L HV  A        A  +   
Sbjct: 295 VEGGFIQIDDFCQTKERHIYAIGDVIGEPQ--------LAHVAMAEGE---MAAEHIAGK 343

Query: 210 KTDKFDY 216
           K   FDY
Sbjct: 344 KPRPFDY 350

Length = 472

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 4/165 (2%)

Query: 12  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
           G+D + V   R + D + ++ + +      A VIGGG +G+E A  L    ++V+++   
Sbjct: 115 GADKKGVYVFRTIEDLDAIMAMAQRFK--KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHA 172

Query: 72  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
              MA+          +   + KG+ F+      + ++    K   +  +DG+ L  D++
Sbjct: 173 PGLMAKQLDQTAGRLLQRELEQKGLTFLLEK--DTVEIVGATKADRIRFKDGSSLEADLI 230

Query: 132 VVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAA 176
           V+  GIRPN  L          GI V   +Q+S+  +YAVG+ A 
Sbjct: 231 VMAAGIRPNDELAVSAGIKVNRGIIVNDSMQTSDPDIYAVGECAE 275

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 69.0 bits (169), Expect = 6e-13
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
            VIGGG IG+E A +       VT++   +  +     P+I++  EE    +G++ V   
Sbjct: 170 AVIGGGAIGVELAQAFARLGSEVTILQ-RSDRLLPREEPEISAAVEEALAEEGIEVVTSA 228

Query: 103 VLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTSLFE----GQLTLEKGGIKV 157
            + +  V   GK++ V    G   +  D ++V  G RPNT        G    E+GGI V
Sbjct: 229 QVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILV 288

Query: 158 TGRLQSSNSSVYAVGDV 174
              L++SN  +YA GDV
Sbjct: 289 DETLRTSNPGIYAAGDV 305

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 41  NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 100
             VV+GGGYIG+E A++L      VT+V      + R F  +IA   +E  +  G++ + 
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59

Query: 101 GTVLSSFDVDSNGKVVAVNLRDG 123
            T +   + + +G VV +   DG
Sbjct: 60  NTTVEEIEGNGDGVVVKLKTGDG 82

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 68.2 bits (168), Expect = 1e-12
 Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 21/149 (14%)

Query: 42  AVVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARL---FTPKIASYYEEYYKSKG 95
            VVIGGGYIG+E A   ASL      VT+V  EA  + R+      +I+   E   K +G
Sbjct: 175 LVVIGGGYIGVEFASAYASL---GAEVTIV--EA--LPRILPGEDKEISKLAERALKKRG 227

Query: 96  VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT---DMVVVGIGIRPNTS---LFEGQLT 149
           +K   G      +   +G  V V L DG +  T   D V+V +G RPNT    L E  + 
Sbjct: 228 IKIKTGAKAKKVEQTDDG--VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVK 285

Query: 150 LEKGGIKVTGRLQSSNSSVYAVGDVAAFP 178
            ++G I+V  +L+++  ++YA+GD+   P
Sbjct: 286 TDRGFIEVDEQLRTNVPNIYAIGDIVGGP 314

Length = 462

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 22/183 (12%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVKFV 99
           V+IGGG IG+E A+        VT++  E   + R+      +++   ++  K KGVK +
Sbjct: 174 VIIGGGVIGVEFASIFASLGSKVTVI--EM--LDRILPGEDAEVSKVLQKALKKKGVKIL 229

Query: 100 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 155
             T +++ + + +         +   L  + V+V +G +PNT        G    E+G I
Sbjct: 230 TNTKVTAVEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRI 289

Query: 156 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFD 215
            V   ++++   +YA+GDV   P+        L HV  A      A   I    +    D
Sbjct: 290 VVDEYMRTNVPGIYAIGDVIGGPM--------LAHV--ASHEGIVAAENIAG-KEPAHID 338

Query: 216 YLP 218
           Y  
Sbjct: 339 YDA 341

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 64.8 bits (159), Expect = 1e-11
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
           V+IGGGYIG+E A         VT++      + R     +A+   E  + +G+      
Sbjct: 175 VIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNA 233

Query: 103 VLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTSLFEGQLTLEK--------G 153
                + D +G  V ++   G   +    ++V +G  PNT   +  L LE         G
Sbjct: 234 ECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT---DD-LGLEAAGVETDARG 289

Query: 154 GIKVTGRLQSSNSSVYAVGDV 174
            IKV  +L+++N  +YA GD 
Sbjct: 290 YIKVDDQLRTTNPGIYAAGDC 310

Length = 463

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 42/202 (20%)

Query: 8   FGLSGSDAENVCYLRDLADANRLVNVMKSC-------SGGNA----VVIGGGYIGMECAA 56
           FG+ G+ AE    L+ L DA RL   +              A    V++GGG  G+E A 
Sbjct: 114 FGIPGA-AEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAG 172

Query: 57  SL------------VIN-KINVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVKFVK 100
            L            V   ++ V +V  EA    R+   F PK++ Y E   +  GV+ + 
Sbjct: 173 ELAERLHRLLKKFRVDPSELRVILV--EA--GPRILPMFPPKLSKYAERALEKLGVEVLL 228

Query: 101 GTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTSL--FEGQLTLEKGGIKV 157
           GT ++   V  +G    V L+DG   +P D VV   G+R +  L    G  T  +G + V
Sbjct: 229 GTPVTE--VTPDG----VTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVV 282

Query: 158 TGRLQS-SNSSVYAVGDVAAFP 178
              LQ   +  ++A GD AA  
Sbjct: 283 NPTLQVPGHPDIFAAGDCAAVI 304

Length = 405

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 62.9 bits (154), Expect = 6e-11
 Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 24/184 (13%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKG 101
            VIGGG IG+E   +L    + VT+   E    +  L  P+++   ++   SK  K   G
Sbjct: 173 AVIGGGVIGLELGQALSRLGVKVTVF--ERGDRILPLEDPEVSKQAQKIL-SKEFKIKLG 229

Query: 102 TVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNT---SLFEGQLTLEKGG-IK 156
             ++S +   + KV  +        +  D V+V  G RPNT    L    + L++ G   
Sbjct: 230 AKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPV 289

Query: 157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV--DSARKSAKHAVAAIMEPDKTDKF 214
           V    Q+S   +YA GDV   P         L H   D  R +A++A       D     
Sbjct: 290 VDEHTQTSVPGIYAAGDVNGKPP--------LLHEAADEGRIAAENAAG-----DVAGGV 336

Query: 215 DYLP 218
            Y P
Sbjct: 337 RYHP 340

Length = 460

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 35/166 (21%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 12  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
           G +++    LR+L D + +   +K+     A+V+G GYI +E   +L    ++ T++   
Sbjct: 121 GFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRS 180

Query: 72  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
              + +L    +     +    + + +     + +  ++ N     V  + G     DM+
Sbjct: 181 DK-INKLMDADMNQPILDELDKREIPYRLNEEIDA--INGN----EVTFKSGKVEHYDMI 233

Query: 132 VVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVA 175
           + G+G  PN+   E   + L +KG I V  + +++  ++YA+GD+ 
Sbjct: 234 IEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDII 279

Length = 438

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 58.8 bits (143), Expect = 9e-10
 Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 20/152 (13%)

Query: 39  GGNAVVIGGGYIGMECAASLVINKINVTMVF------PEAHCMARLFTPKIASYYEEYYK 92
           G + VVIGGG   +E A  L      VT+V        E   + RL             K
Sbjct: 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLK------------K 190

Query: 93  SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTSLFEGQLTLE 151
           +  ++ +  TV+     D    VV  N++   + LP D V + IG  PNT L +G   L+
Sbjct: 191 NVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLD 250

Query: 152 KGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLL 182
           + G I V   +++S   ++A GDVA    + +
Sbjct: 251 ENGYIVVDEEMETSVPGIFAAGDVADKNGRQI 282

Length = 305

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 29/168 (17%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF---TPKIASYYEEYYKSKGV 96
            + V+ G G IGME A  L    ++VT+V      + R       +++    + YK  GV
Sbjct: 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIV----EFLDRALPNEDAEVSKEIAKQYKKLGV 228

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEG-------- 146
           K + GT + S D + +   V V+ +DG    L  D V+  IG  P     EG        
Sbjct: 229 KILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV---EGYGLEKTGV 285

Query: 147 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA 194
            LT ++G I +   ++++   +YA+GDV A   KL      L HV  A
Sbjct: 286 ALT-DRGAIAIDDYMRTNVPHIYAIGDVTA---KLQ-----LAHVAEA 324

Length = 466

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 57.1 bits (139), Expect = 5e-09
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 43  VVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 101
            V+G GYI +E A   V+N +   T +F       R F P I     E  + KG++    
Sbjct: 171 AVVGAGYIAVEFAG--VLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTN 228

Query: 102 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR- 160
            V  + + +++G +  + L DG  L  D ++  IG  PNT      L LE  G+K+  + 
Sbjct: 229 AVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTD----GLGLENAGVKLNEKG 283

Query: 161 -------LQSSNSSVYAVGDV 174
                    ++   +YAVGDV
Sbjct: 284 YIIVDEYQNTNVPGIYAVGDV 304

Length = 450

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 42  AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 101
            ++ GGGYI +E A       +  T+++     +   F   +        + +G++ +  
Sbjct: 169 ILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRG-FDDDMRRGLAAALEERGIRILPE 227

Query: 102 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF----EGQLTLEKGGIKV 157
             ++S   D +G++ A  L     +  D+V+   G  PNT+       G    + G I V
Sbjct: 228 DSITSISKDDDGRLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAV 286

Query: 158 TGRLQSSNSSVYAVGDV 174
               ++S  S+YAVGDV
Sbjct: 287 DEYSRTSTPSIYAVGDV 303

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 44  VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 103
           +IGGG IG+E  A L     +   V   A  +     P +A+  ++Y +  G+ F+    
Sbjct: 162 IIGGGNIGLE-FAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAH 220

Query: 104 LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLT----LEKGGIKVTG 159
            +    D +  +V            D ++   G +PNT     + T     E+G IKV  
Sbjct: 221 TTEVKNDGDQVLVVTE---DETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDD 277

Query: 160 RLQSSNSSVYAVGDV 174
             Q+S   V+AVGDV
Sbjct: 278 YCQTSVPGVFAVGDV 292

Length = 438

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 48/200 (24%), Positives = 67/200 (33%), Gaps = 47/200 (23%)

Query: 9   GLSGSDAENVCYLRDLADAN---RLVNVMKSCS----GGNAVVIGGGYIGMECAASLVIN 61
           G+ G +   V        A      VN   +      G   VVIGGG   M+ A +    
Sbjct: 242 GIPGENLGGVY------SAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRL 295

Query: 62  KI-NVTMVF--PEAHCMARLFTPKIASYYE-EYYKSKGVKFVKGTVLSSFDVDSNGK--V 115
              +VT+V+       M        AS  E E+ K +GV+F           D      V
Sbjct: 296 GAESVTIVYRRGREE-MP-------ASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGV 347

Query: 116 VAVNLRDGNR----------------LPTDMVVVGIGIRPNTSLFEGQLTLE---KGGIK 156
             V +  G                  LP D+V+  IG  PN  +      LE    G I 
Sbjct: 348 EFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTII 407

Query: 157 VT-GRLQSSNSSVYAVGDVA 175
                 ++S   V+A GD+ 
Sbjct: 408 ADDETGRTSLPGVFAGGDIV 427

Length = 457

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 34  MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS 93
           +  C G   +V+G  Y+ +ECA  L    ++VT++      + R F    A+   E+ + 
Sbjct: 176 LPYCPG-KTLVVGASYVALECAGFLAGIGLDVTVMVRS--ILLRGFDQDCANKVGEHMEE 232

Query: 94  KGVKFVKGTVLSSFD-VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEK 152
            GVKF +  V    + +++   V   +  +G     D V++ IG    T     +L LE 
Sbjct: 233 HGVKFKRQFVPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTR----KLNLEN 288

Query: 153 GGIKV---TGRL------QSSNSSVYAVGDVA 175
            G+K+   TG++      Q++   +YAVGD+ 
Sbjct: 289 VGVKINKKTGKIPADEEEQTNVPYIYAVGDIL 320

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
           ++ G G IG E A+      + VT++      ++ L   +I+     + +  GV      
Sbjct: 179 IIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFL-DDEISDALSYHLRDSGVTIRHNE 237

Query: 103 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE--------KGG 154
            +   +   +G +V  +L+ G ++  D ++   G   NT      L LE        +G 
Sbjct: 238 EVEKVEGGDDGVIV--HLKSGKKIKADCLLYANGRTGNTD----GLNLENAGLEADSRGQ 291

Query: 155 IKVTGRLQSSNSSVYAVGDVAAFP 178
           +KV    Q++   +YAVGDV  FP
Sbjct: 292 LKVNENYQTAVPHIYAVGDVIGFP 315

Length = 461

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 47/185 (25%), Positives = 72/185 (38%), Gaps = 37/185 (20%)

Query: 39  GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEE--YYKSKGV 96
           G + VVIGGG   ++ A +    ++       E HC+ R     + +  EE  + + +GV
Sbjct: 272 GKSVVVIGGGNTAVDSART--ALRLGA-----EVHCLYRRTREDMTARVEEIAHAEEEGV 324

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRD---------GNRLP-----------TDMVVVGIG 136
           KF           D  G V AV  R          G R              D V+V IG
Sbjct: 325 KFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIG 384

Query: 137 IRPNTSLFEGQ--LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA 194
              N  + E     T E+G I V    ++S   V+A GD+      +LG    +  +   
Sbjct: 385 NGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDI------ILGAATVIRAMGQG 438

Query: 195 RKSAK 199
           +++AK
Sbjct: 439 KRAAK 443

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 21/150 (14%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT---PKIASYYEEYYKSKGVKFV 99
            VIG G IG+E  +  V  ++   +   EA  +         ++A    + +  +G+   
Sbjct: 187 AVIGAGVIGLELGS--VWRRLGAEVTILEA--LPAFLAAADEQVAKEAAKAFTKQGLDIH 242

Query: 100 KGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTSLFEGQLTLEKGG--- 154
            G  +        G  VA    DG    L  D ++V IG  PNT      L LE  G   
Sbjct: 243 LGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT----DGLGLEAVGLKL 298

Query: 155 -----IKVTGRLQSSNSSVYAVGDVAAFPL 179
                I V    +++  +VYA+GDV   P+
Sbjct: 299 DERGFIPVDDHCRTNVPNVYAIGDVVRGPM 328

Length = 475

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 29/193 (15%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
           V++GGGYI  E A         VT+V   +  + R     I+  + E  K K      G 
Sbjct: 173 VIVGGGYIAAEFAHVFSALGTRVTIVN-RSTKLLRHLDEDISDRFTEIAKKK-WDIRLGR 230

Query: 103 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVT--GR 160
            +++ + D +G  V + L DG+ +  D+++V  G  PN       L  E  G++V   GR
Sbjct: 231 NVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGD----LLDAEAAGVEVDEDGR 284

Query: 161 L------QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA-KHAVAAIMEPDKTDK 213
           +      ++S   V+A+GDV++ P +       L+HV +A     KH +     P+   K
Sbjct: 285 IKVDEYGRTSARGVWALGDVSS-PYQ-------LKHVANAEARVVKHNLL---HPNDLRK 333

Query: 214 FDYLPFFYSRVFT 226
             +  F  S VFT
Sbjct: 334 MPH-DFVPSAVFT 345

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 8/178 (4%)

Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           + GS+ ++    R + D N +    +    G   V+GGG +G+E A +L    +   ++ 
Sbjct: 118 IKGSETQDCFVYRTIEDLNAIEACARRSKRG--AVVGGGLLGLEAAGALKNLGVETHVIE 175

Query: 70  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGNRLP 127
                MA               +S GV+    T  ++ ++   G      +R  DG+ L 
Sbjct: 176 FAPMLMAEQLDQMGGEQLRRKIESMGVRV--HTSKNTLEIVQEGVEARKTMRFADGSELE 233

Query: 128 TDMVVVGIGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG 183
            D +V   GIRP   L    G     +GGI +    Q+S+  +YA+G+ A++  ++ G
Sbjct: 234 VDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG 291

Length = 847

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 25/146 (17%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGVKF 98
           +++GGG IG E A+        VT+V  E   MA    P     IA    E  ++ GVK 
Sbjct: 174 LIVGGGVIGCEFASIYSRLGTKVTIV--E---MAPQLLPGEDEDIAHILREKLENDGVKI 228

Query: 99  VKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLTLEKGG-- 154
             G  L   +   + K  A+   +G+   +  + V+V +G +P       QL LEK G  
Sbjct: 229 FTGAALKGLN---SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ----QLNLEKAGVQ 281

Query: 155 -----IKVTGRLQSSNSSVYAVGDVA 175
                I V   +Q++   +YA GDV 
Sbjct: 282 FSNKGISVNEHMQTNVPHIYACGDVI 307

Length = 458

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 8/139 (5%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
           +VIG   + +E A +       VT V   +  +++   P +    E  ++ +G++ +K T
Sbjct: 182 LVIGASVVALELAQAFARLGSRVT-VLARSRVLSQE-DPAVGEAIEAAFRREGIEVLKQT 239

Query: 103 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIKVTG 159
             S  D +    ++  N      L  + ++V  G  PNT     +   +  E+G I++  
Sbjct: 240 QASEVDYNGREFILETN---AGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDE 296

Query: 160 RLQSSNSSVYAVGDVAAFP 178
            LQ++ S +YA GD    P
Sbjct: 297 HLQTTVSGIYAAGDCTDQP 315

Length = 468

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 31/158 (19%)

Query: 39  GGNAVVIGGGYIGMECA-ASLVINKI-NVTMVFPEAHCMARLFTPKIASYYEEYYK--SK 94
           G + VV+GGG   M+ A A+L +  +  VT+V+       +   P   ++ EEY +    
Sbjct: 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT----KQEMP---AWREEYEEALED 720

Query: 95  GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR----------------LPTDMVVVGIGIR 138
           GV+F +  +L+    D++G +    ++ G                  L  D V+  IG +
Sbjct: 721 GVEFKE--LLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ 778

Query: 139 PNTSLFE--GQLTLEKGGIKVTGRLQSSNSSVYAVGDV 174
            +T L +  G    +KG   V    ++S ++VY +GDV
Sbjct: 779 VDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDV 816

Length = 1019

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 18/146 (12%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 100
            V+GGG   +E A  L + +I   VT+V    H   +    KI    +   K+  ++F+ 
Sbjct: 144 AVVGGGDSAIEEA--LYLTRIAKKVTLV----HRRDKFRAEKI--LLDRLKKNPKIEFLW 195

Query: 101 GTVLSSFDVDSNGKVVAVNLRDGNR-----LPTDMVVVGIGIRPNTSLFEGQLTLEKGG- 154
            + +   ++  + KV  V +++        L  D V + IG  PNT L +G L L++ G 
Sbjct: 196 NSTVK--EIVGDNKVEGVKIKNTVTGEEEELEVDGVFIAIGHEPNTELLKGLLELDENGY 253

Query: 155 IKVTGRLQSSNSSVYAVGDVAAFPLK 180
           I     +++S   V+A GDV     +
Sbjct: 254 IVTDEGMRTSVPGVFAAGDVRDKGYR 279

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 48/181 (26%), Positives = 70/181 (38%), Gaps = 46/181 (25%)

Query: 31  VNVMKSCS---------GGNAVVIGGGYIGME-CAASLVINKINVTMVF--PEAHCMARL 78
           VN+M + S         G    V+GGG   M+    +  +    VT+V+   E    ARL
Sbjct: 553 VNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARL 612

Query: 79  FTPKIASYYEEYY--KSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DGNR-- 125
                    EE    K +G++F+       +  D  G V  V L+          G R  
Sbjct: 613 ---------EEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRP 663

Query: 126 ---------LPTDMVVVGIGIRPN---TSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGD 173
                    +  D+V+V +G+ PN    S   G     KG I V   +QSS   +YA GD
Sbjct: 664 VAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGD 723

Query: 174 V 174
           +
Sbjct: 724 I 724

Length = 752

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 19/148 (12%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK-GVKFVKG 101
           V++GGG+I  E A       + VT+V   +  + R     I+  + E    +  V+  + 
Sbjct: 170 VIVGGGFIAAEFAHVFSALGVRVTVV-NRSGRLLRHLDDDISERFTELASKRWDVRLGRN 228

Query: 102 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVT--G 159
            V     V  +G  V + L DG+ +  D+++V  G  PN       L     G+ V   G
Sbjct: 229 VV----GVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD----LLDAAAAGVDVDEDG 280

Query: 160 RL------QSSNSSVYAVGDVAA-FPLK 180
           R+      ++S   V+A+GDV++ + LK
Sbjct: 281 RVVVDEYQRTSAEGVFALGDVSSPYQLK 308

Length = 451

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 39/200 (19%)

Query: 8   FGLSGSDAENVCYLRDLADA----NRLVNVMKSCSGGNA-----------VVIGGGYIGM 52
           F + G + E   +L+++  A     R+V  ++  S               VV+GGG  G+
Sbjct: 128 FNIPGVE-ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGV 186

Query: 53  ECAASLV-INKINVTMVFPE--AHCMARLF--TPKIASYYEEYYKSKGVKFVKGTVLSSF 107
           E AA L    + +V  + PE    C   +     ++   +++  +  G + ++       
Sbjct: 187 EFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRR---LGV 243

Query: 108 DVDSNGKVVAVN-----LRDGNRLPTDMVV--VGIGIRPNTSLFEGQLTLEK---GGIKV 157
           D+ +   V  V      L+DG  +PT +VV   G+G  P T     QL ++K   G I V
Sbjct: 244 DIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTK----QLKVDKTSRGRISV 299

Query: 158 TGRLQSSN-SSVYAVGDVAA 176
              L+     +V+A+GD AA
Sbjct: 300 DDHLRVKPIPNVFALGDCAA 319

Length = 424

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 24/115 (20%)

Query: 43  VVIGGGYIGMECAASLV--INKINVTMVFPEAHCMARLFTP-------------KIASYY 87
           V++GGG+ G+  A  L   +  + +T+V    +    LFTP             +IA   
Sbjct: 7   VILGGGFGGLSAAKRLARKLPDVEITLVDRRDY---HLFTPLLYEVATGTLSESEIAIPL 63

Query: 88  EEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 141
               +  G V+FV+G V    D+D + K V   L D   +  D +VV +G   N 
Sbjct: 64  RALLRKSGNVQFVQGEVT---DIDRDAKKVT--LADLGEISYDYLVVALGSETNY 113

Length = 405

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 25/186 (13%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 99
              V++G GYI +E A  L        +V      + R F   I+    E Y+ +G+   
Sbjct: 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINVH 225

Query: 100 KGTVLSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSLFEGQLTLEKGGIKVT 158
           K +     +    GK+V ++  DG  +   D ++  IG +PNT      L LE  GIK+ 
Sbjct: 226 KLSKPVKVEKTVEGKLV-IHFEDGKSIDDVDELIWAIGRKPNTK----GLGLENVGIKLN 280

Query: 159 GR-------LQSSN-SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 210
            +        Q++N   +YA+GDV            ++E    A  + +     +     
Sbjct: 281 EKGQIIVDEYQNTNVPGIYALGDV----------VGKVELTPVAIAAGRKLSERLFNGKT 330

Query: 211 TDKFDY 216
            DK DY
Sbjct: 331 DDKLDY 336

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 36/166 (21%)

Query: 43  VVIGGGYIGMECAASLV------INKINVTMVFPEAHCMARLFTPKIASYYE-EYYKSKG 95
           VVIGGG + M+ A S+         ++NV +       + R F    A   E E    +G
Sbjct: 422 VVIGGGNVAMDIARSMARLQKMEYGEVNVKVT-----SLERTFEEMPADMEEIEEGLEEG 476

Query: 96  VKFVKGTVLSSFDVDSNGKVVAVNLR------DGNR-------------LPTDMVVVGIG 136
           V    G       ++ N KV  V  +      D                +  DMVV  IG
Sbjct: 477 VVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIG 535

Query: 137 IRPNTSLF----EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFP 178
             P+ S      + +L   +G I      Q+S   ++A GD+   P
Sbjct: 536 QAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGP 581

Length = 604

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 44/180 (24%), Positives = 66/180 (36%), Gaps = 46/180 (25%)

Query: 31  VNVMKS---------CSGGNAVVIGGGYIGMECAASLVINKINVTMVF--PEAHCMARLF 79
           VN+MK+           G    V+GGG + M+ A + +     V +V+   E    AR+ 
Sbjct: 264 VNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARV- 322

Query: 80  TPKIASYYEEYY--KSKGVKFVKGTVLSSFDVDSNGKVVAVNL---------RDGNR--- 125
                   EE +  K +GV F   T       D NG V  +             G R   
Sbjct: 323 --------EEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPV 374

Query: 126 --------LPTDMVVVGIGIRPN---TSLFEGQLTLEKGGIKVTGR-LQSSNSSVYAVGD 173
                   L  D V++ +G  PN   +S  +G    ++G I        +S   V+A GD
Sbjct: 375 EIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGD 434

Length = 464

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 102 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGR 160
            V     V   G   A+ L DG  LP D ++   G R    L E  L L E G ++V   
Sbjct: 207 EVHEGAPVTR-GPDGALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPT 265

Query: 161 LQS-SNSSVYAVGDVAAFP 178
           LQS S+  V+A GD A   
Sbjct: 266 LQSLSHPHVFAAGDCAVIT 284

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 9/140 (6%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 99
           G  +++G  YIG+E A  L  N++   +         R F  + +    EY K +G  F+
Sbjct: 183 GKTLIVGASYIGLETAGFL--NELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFL 240

Query: 100 KGTVLSSFD-VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT---SLFEGQLTLEKGGI 155
           +G V  + + +D     + V   DG     D V+   G +P+    +L    + + K   
Sbjct: 241 EGVVPINIEKMDDK---IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNK 297

Query: 156 KVTGRLQSSNSSVYAVGDVA 175
            +     ++  +++AVGDV 
Sbjct: 298 IIAPNDCTNIPNIFAVGDVV 317

Length = 499

>gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 133 VGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QSSNSSVYAVGDV 174
           V IG  PNT++FEGQL LE G IKV   +     Q+S   V+A GDV
Sbjct: 242 VAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDV 288

Length = 321

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 6/135 (4%)

Query: 43  VVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 101
            + G GYI +E     V+N++   + +F   + + R F   I +  E   K   +  +  
Sbjct: 241 GIAGSGYIAVELIN--VVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITH 298

Query: 102 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIKVT 158
             +   +      +             D V+  +G  PNT     +   +   KG IKV 
Sbjct: 299 ANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVD 358

Query: 159 GRLQSSNSSVYAVGD 173
              ++S   +YAVGD
Sbjct: 359 DNQRTSVKHIYAVGD 373

Length = 561

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 16/139 (11%)

Query: 44  VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK----IASYYEEYYKSKGVKFV 99
           ++GGGYIG+E A+        VT++  EA   A LF P+    IA       + +GV  +
Sbjct: 163 ILGGGYIGVEFASMFANFGSKVTIL--EA---ASLFLPREDRDIADNIATILRDQGVDII 217

Query: 100 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 155
               +    +  +   V V+         D +++  G +P T+       G    E+G I
Sbjct: 218 LNAHVER--ISHHENQVQVHSEHAQLA-VDALLIASGRQPATASLHPENAGIAVNERGAI 274

Query: 156 KVTGRLQSSNSSVYAVGDV 174
            V   L ++  +++A+GDV
Sbjct: 275 VVDKYLHTTADNIWAMGDV 293

Length = 441

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 40/165 (24%), Positives = 60/165 (36%), Gaps = 28/165 (16%)

Query: 38  SGGNAVVIGGGYIGMECAA-SLVINKINVTMVFPEAHCMARLFTPKIASYYE-EYYKSKG 95
            G   VVIGGG   M+CA  +L +   +VT  + E         P  A+  E      +G
Sbjct: 261 KGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEG 320

Query: 96  VKFVKGTVLSSFDVDSNGKVVAVNL-------------RDGN--------RLPTDMVVVG 134
           V+ +      +F  +  G+V  V               R G             D V++ 
Sbjct: 321 VERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILA 380

Query: 135 IGIRPNTSLF----EGQLTLEKGGIKV-TGRLQSSNSSVYAVGDV 174
           IG   + +       G    ++G IKV     Q+S   V+A GD 
Sbjct: 381 IGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDA 425

Length = 457

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 42  AVVIGGGYIGMECAASLVINKINVTM-VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 100
           AVV+GGGYI +E A+  +   +  T+ +F       R F  ++ +      + +G+    
Sbjct: 206 AVVLGGGYIAVEFAS--IWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHP 263

Query: 101 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS---LFEGQLTLEK-GGIK 156
            T L+       G  + V    G     D+V+   G  PNT    L    + L+K G +K
Sbjct: 264 RTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVK 321

Query: 157 VTGRLQSSNSSVYAVGDV 174
           V    +++  S++A+GDV
Sbjct: 322 VDEYSRTNIPSIWAIGDV 339

Length = 499

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 112 NGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSN 165
             KV  +  +D N     +L  D V V IG+ PNT   +  + L  +G I +  R ++S 
Sbjct: 418 GDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRTSV 477

Query: 166 SSVYAVGDVAAFPLK 180
             ++A GDV   P K
Sbjct: 478 PGIFAAGDVTTVPYK 492

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 16/119 (13%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAH-CMARLFTPKIASYY-------------- 87
           V+IGGG  G+  A  L    + V ++  E   C  R   PK                   
Sbjct: 3   VIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLALP 62

Query: 88  EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 146
           EE YK  GV+ + GT +   D      VV  ++  G  +  D +++  G RP      G
Sbjct: 63  EEVYKEFGVEVLLGTEVVDIDRG-EKTVVLKDVETGREITYDKLIIATGARPRIPGIPG 120

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 33/166 (19%)

Query: 36  SCSGGNAVVIGGGYIGMECA-ASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK 94
              G   VV+GGG   M+C   ++ +   +VT  +            ++A+  EE     
Sbjct: 279 DVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREE----- 333

Query: 95  GVKFVKGTVLSSFDVDSNGKVVAVNL---------RDGNR-----------LPTDMVVVG 134
           GV+F+        + D +G+V  V L          DG R           LP D+V++ 
Sbjct: 334 GVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMA 393

Query: 135 IGIRP-NTSLFEGQ-LTLEKGGIKVTG-----RLQSSNSSVYAVGD 173
            G +P       G  +TL+  G  +TG       Q++N  ++A GD
Sbjct: 394 FGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGD 439

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 45/206 (21%)

Query: 39  GGNAVVIGGGYIGMECA-ASLVINKI-NVTMVFPEAHCMARLFTPKIASYYEEYYKS--K 94
           G + VV+GGG   M+ A A+L +  +  VT+V+       R     + +  EE  ++   
Sbjct: 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVY-------RRTKRYMPASREELEEALED 718

Query: 95  GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR----------------LPTDMVVVGIGIR 138
           GV F +     SF+   +G +    ++ G                  LP D V+  +G +
Sbjct: 719 GVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ 775

Query: 139 PNTSLFE--GQLTLEKGGIKV-TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSAR 195
            +T L +  G    E G   V     +++ ++V+ +GD         G    +E +   R
Sbjct: 776 VDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDA------NRGPATIVEAIADGR 829

Query: 196 KSAKHAVAAIMEPD--KTDKFDYLPF 219
           K+A     AI+  +   +D     P 
Sbjct: 830 KAAN----AILSREGLNSDVDKVFPI 851

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	100.0
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
PRK06370	463	mercuric reductase; Validated	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PLN02507	499	glutathione reductase	100.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PLN02546	558	glutathione reductase	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	100.0
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.98
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.96
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.96
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.95
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.94
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.93
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.93
PRK10262	321	thioredoxin reductase; Provisional	99.91
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	99.91
PRK12831	464	putative oxidoreductase; Provisional	99.91
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.89
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.89
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.88
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.88
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.88
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.88
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.86
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.86
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.86
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.86
PRK13984	604	putative oxidoreductase; Provisional	99.85
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.84
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.84
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.84
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.83
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.83
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.83
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.82
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.8
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.8
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.73
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.73
PLN02852	491	ferredoxin-NADP+ reductase	99.72
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.68
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.65
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.58
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.55
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.42
KOG2755	334	consensus Oxidoreductase [General function predict	99.39
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.36
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.18
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.11
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.1
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.06
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.94
COG2081	408	Predicted flavoproteins [General function predicti	98.92
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.89
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.82
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.82
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.8
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.78
PRK06847	375	hypothetical protein; Provisional	98.76
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	98.75
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.74
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.74
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.72
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.71
PRK07236	386	hypothetical protein; Provisional	98.68
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.63
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.63
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	98.61
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.6
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.6
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.6
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.58
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.57
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.57
PRK10262	321	thioredoxin reductase; Provisional	98.55
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.54
PRK06834	488	hypothetical protein; Provisional	98.53
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.51
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.51
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.49
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.48
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.48
PRK08163	396	salicylate hydroxylase; Provisional	98.48
PRK07045	388	putative monooxygenase; Reviewed	98.46
PRK08244	493	hypothetical protein; Provisional	98.46
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.46
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.46
PRK12831	464	putative oxidoreductase; Provisional	98.45
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.45
PLN02463	447	lycopene beta cyclase	98.44
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.44
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.44
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.43
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.42
PLN02661	357	Putative thiazole synthesis	98.42
PRK07588	391	hypothetical protein; Provisional	98.42
PRK05868	372	hypothetical protein; Validated	98.42
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.41
PRK06184	502	hypothetical protein; Provisional	98.4
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.4
PLN02852	491	ferredoxin-NADP+ reductase	98.4
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.39
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.39
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.37
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.35
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.35
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.35
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.33
PRK06116	450	glutathione reductase; Validated	98.32
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.32
PRK06753	373	hypothetical protein; Provisional	98.32
PRK10157	428	putative oxidoreductase FixC; Provisional	98.32
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.32
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.32
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.31
PRK09126	392	hypothetical protein; Provisional	98.31
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.31
PRK08013	400	oxidoreductase; Provisional	98.3
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.3
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.3
PRK07190	487	hypothetical protein; Provisional	98.29
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.29
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.28
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.27
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.27
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.27
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.24
PLN02697	529	lycopene epsilon cyclase	98.24
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.24
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.24
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.24
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.23
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.23
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.23
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	98.21
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.21
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.21
PRK06475	400	salicylate hydroxylase; Provisional	98.2
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.19
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.19
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.19
PRK10015	429	oxidoreductase; Provisional	98.18
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.18
PTZ00188	506	adrenodoxin reductase; Provisional	98.18
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.17
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.16
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.14
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.14
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.14
PRK06185	407	hypothetical protein; Provisional	98.11
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.1
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.09
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.09
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.08
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.08
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.07
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.07
PRK06370	463	mercuric reductase; Validated	98.05
PRK13984	604	putative oxidoreductase; Provisional	98.05
PF14759	85	Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX	98.04
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.04
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.02
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.02
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.02
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.02
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.01
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.0
PRK09897	534	hypothetical protein; Provisional	97.99
COG0579	429	Predicted dehydrogenase [General function predicti	97.99
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.99
PRK14694	468	putative mercuric reductase; Provisional	97.98
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.98
TIGR02053	463	MerA mercuric reductase. This model represents the	97.98
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.98
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.97
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.97
PRK13748	561	putative mercuric reductase; Provisional	97.96
PRK06996	398	hypothetical protein; Provisional	97.95
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.94
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.94
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.93
PRK07538	413	hypothetical protein; Provisional	97.93
PRK06126	545	hypothetical protein; Provisional	97.92
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.91
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.91
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.9
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.9
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.89
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.89
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.88
PRK11445	351	putative oxidoreductase; Provisional	97.87
PTZ00058	561	glutathione reductase; Provisional	97.85
PLN02546	558	glutathione reductase	97.85
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.84
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.81
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.8
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.78
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.77
PLN02507	499	glutathione reductase	97.77
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.76
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.75
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.75
PRK14727	479	putative mercuric reductase; Provisional	97.74
PRK07121	492	hypothetical protein; Validated	97.73
PRK08274	466	tricarballylate dehydrogenase; Validated	97.72
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.71
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.7
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.69
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	97.69
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.68
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.67
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.67
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.67
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.66
PLN02985	514	squalene monooxygenase	97.66
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.64
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.59
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.59
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.57
PRK08294	634	phenol 2-monooxygenase; Provisional	97.56
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.52
PRK08401	466	L-aspartate oxidase; Provisional	97.52
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.51
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.51
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.48
PTZ00188	506	adrenodoxin reductase; Provisional	97.47
PRK07804	541	L-aspartate oxidase; Provisional	97.45
PTZ00052	499	thioredoxin reductase; Provisional	97.41
PRK07846	451	mycothione reductase; Reviewed	97.4
PRK08275	554	putative oxidoreductase; Provisional	97.39
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.38
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.38
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.36
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.34
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.32
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.32
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.31
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.31
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.31
PRK06175	433	L-aspartate oxidase; Provisional	97.3
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.3
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.3
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.28
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.28
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.27
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.26
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.23
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.23
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.23
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.22
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.21
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.18
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.18
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.18
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.17
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.16
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.16
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.14
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.13
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.1
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.09
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.09
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.06
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.05
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.05
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.0
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	96.99
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.95
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	96.91
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	96.89
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.85
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	96.83
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	96.78
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.77
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.76
PRK08071	510	L-aspartate oxidase; Provisional	96.75
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	96.72
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	96.71
PRK05320	257	rhodanese superfamily protein; Provisional	96.71
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	96.71
PRK07395	553	L-aspartate oxidase; Provisional	96.7
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	96.67
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.66
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	96.63
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	96.62
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.6
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.59
PRK11883	451	protoporphyrinogen oxidase; Reviewed	96.58
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.54
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	96.54
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	96.54
PRK07512	513	L-aspartate oxidase; Provisional	96.52
PLN02815	594	L-aspartate oxidase	96.5
PRK07233	434	hypothetical protein; Provisional	96.48
COG3349	485	Uncharacterized conserved protein [Function unknow	96.46
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	96.45
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	96.43
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	96.43
PLN02268	435	probable polyamine oxidase	96.4
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.4
PRK12839	572	hypothetical protein; Provisional	96.39
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.37
KOG2755	334	consensus Oxidoreductase [General function predict	96.35
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	96.28
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	96.27
PRK07208	479	hypothetical protein; Provisional	96.26
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	96.25
PRK09077	536	L-aspartate oxidase; Provisional	96.24
KOG2852	380	consensus Possible oxidoreductase [General functio	96.2
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	96.18
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.11
PTZ00367	567	squalene epoxidase; Provisional	96.1
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.07
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	96.07
PLN03000	881	amine oxidase	96.06
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	96.0
PLN02576	496	protoporphyrinogen oxidase	95.96
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	95.92
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	95.85
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	95.82
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	95.81
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	95.8
PRK12416	463	protoporphyrinogen oxidase; Provisional	95.76
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.74
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.72
PLN02529	738	lysine-specific histone demethylase 1	95.71
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.7
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.61
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.58
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.58
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.49
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.45
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.45
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	95.43
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.41
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	95.4
PF14721	133	AIF_C: Apoptosis-inducing factor, mitochondrion-as	95.37
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	95.36
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.35
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.31
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.29
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	95.29
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	95.25
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	95.23
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.16
PLN02487	569	zeta-carotene desaturase	95.14
PLN02612	567	phytoene desaturase	95.13
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	95.13
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	95.12
PLN02328	808	lysine-specific histone demethylase 1 homolog	95.07
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.05
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.0
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.99
PRK08275	554	putative oxidoreductase; Provisional	94.99
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.95
PLN02612	567	phytoene desaturase	94.94
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.91
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	94.91
PRK04148	134	hypothetical protein; Provisional	94.85
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	94.82
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.77
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	94.69
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	94.63
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.61
PLN02568	539	polyamine oxidase	94.56
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	94.53
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.52
PLN02676	487	polyamine oxidase	94.45
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	94.41
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.38
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.37
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	94.37
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	94.31
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	94.26
PRK05257	494	malate:quinone oxidoreductase; Validated	94.24
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.22
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	94.16
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.1
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.94
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	93.91
PRK08071	510	L-aspartate oxidase; Provisional	93.9
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.87
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	93.83
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	93.81
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.79
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.72
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	93.65
PRK07804	541	L-aspartate oxidase; Provisional	93.58
PRK09077	536	L-aspartate oxidase; Provisional	93.52
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.44
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	93.42
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	93.42
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	93.27
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.23
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	93.21
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	93.18
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	93.18
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.12
PRK13339	497	malate:quinone oxidoreductase; Reviewed	93.09
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	93.01
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.82
PRK12842	574	putative succinate dehydrogenase; Reviewed	92.81
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	92.79
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	92.75
PRK08401	466	L-aspartate oxidase; Provisional	92.65
COG2907	447	Predicted NAD/FAD-binding protein [General functio	92.65
PRK09620	229	hypothetical protein; Provisional	92.53
COG0569	225	TrkA K+ transport systems, NAD-binding component [	92.51
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	92.47
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.41
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.34
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	92.27
PLN02976	1713	amine oxidase	92.25
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.24
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	92.19
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	92.19
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	92.18
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	92.1
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	92.03
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	92.0
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	91.99
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	91.98
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.92
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	91.91
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	91.91
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	91.91
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	91.88
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	91.84
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	91.82
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	91.82
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	91.78
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	91.77
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	91.67
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	91.66
PRK07512	513	L-aspartate oxidase; Provisional	91.65
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	91.63
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	91.63
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	91.54
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	91.43
PRK11730	715	fadB multifunctional fatty acid oxidation complex	91.4
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	91.39
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.34
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	91.28
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	91.21
PRK06175	433	L-aspartate oxidase; Provisional	91.2
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	91.2
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	91.15
PRK09496	453	trkA potassium transporter peripheral membrane com	91.14
PRK06849	389	hypothetical protein; Provisional	91.06
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	91.06
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	91.05
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	90.91
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	90.87
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	90.85
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	90.84
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	90.82
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	90.76
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	90.69
PRK07523	255	gluconate 5-dehydrogenase; Provisional	90.68
PLN02815	594	L-aspartate oxidase	90.65
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	90.62
PRK02106	560	choline dehydrogenase; Validated	90.6
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	90.59
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	90.59
PRK07233	434	hypothetical protein; Provisional	90.59
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	90.58

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=1e-41  Score=337.29  Aligned_cols=294  Identities=17%  Similarity=0.291  Sum_probs=242.2

Q ss_pred             CCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHH
Q 018416           11 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY   90 (356)
Q Consensus        11 pG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~   90 (356)
                      |+.+.++++++++++++..+++++....+++++|||||++|+|+|..|+++|.+||++++.+++++. +|+++.+.+.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~  198 (438)
T PRK13512        120 LGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDE  198 (438)
T ss_pred             CCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHH
Confidence            4444578999999999999998887656899999999999999999999999999999999998886 899999999999


Q ss_pred             HHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEecccccCCCCE
Q 018416           91 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSV  168 (356)
Q Consensus        91 l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~l~ts~~~V  168 (356)
                      |+++||++++++++++++.      ..+++++|+++++|.|++++|++||+++++.. +.. ++|+|.||++|||+.|+|
T Consensus       199 l~~~gI~i~~~~~v~~i~~------~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~I  272 (438)
T PRK13512        199 LDKREIPYRLNEEIDAING------NEVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNI  272 (438)
T ss_pred             HHhcCCEEEECCeEEEEeC------CEEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCE
Confidence            9999999999999999963      14667788899999999999999999987655 555 568899999999999999


Q ss_pred             EEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCC-CCCCeEEEEecCceEEEeecccceEEEEc----
Q 018416          169 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKF-DYLPFFYSRVFTLSWQFYGDNVGEVVHYG----  243 (356)
Q Consensus       169 yAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~~~~~~~g----  243 (356)
                      ||+|||+..+....+.+...+++..|.+||+.+++||+|... ..+ +..+..+..++++.++++|+++.++...+    
T Consensus       273 yA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~-~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~~~~  351 (438)
T PRK13512        273 YAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDT-IEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMV  351 (438)
T ss_pred             EEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCc-cccCCcccceEEEEcCceEEeecCCHHHHccCCcEEE
Confidence            999999986544445554556777899999999999998542 222 44556677889999999999886543221    


Q ss_pred             ---c--------CCCCceEEEEe--eCCeEEEEEEeCCC-HH-HHHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCCCC
Q 018416          244 ---N--------FSGTTFGAYWV--NKGRLVGSFLEGGT-KE-EYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPL  308 (356)
Q Consensus       244 ---~--------~~~~~~~~~~~--~~g~ilGa~~vg~~-~~-~~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~~~  308 (356)
                         .        ....+|.++..  ++++|||+|++|++ +. .++.++.+|++++|++||.+++   +.|+|+|++..+
T Consensus       352 ~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~~P~~~~~~~  428 (438)
T PRK13512        352 EVTQGAHANYYPGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFE---VAYAPPYSHPKD  428 (438)
T ss_pred             EEecCCcCCCcCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcc---cccCCCCCcccc
Confidence               0        01123666554  58999999999986 55 4678999999999999999988   999999999887


Q ss_pred             CCCcccc
Q 018416          309 PSTPVDG  315 (356)
Q Consensus       309 ~~~~~~~  315 (356)
                      +.+..++
T Consensus       429 ~~~~~~~  435 (438)
T PRK13512        429 LINMIGY  435 (438)
T ss_pred             HHHHHHH
Confidence            7666553

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=1.3e-41  Score=337.29  Aligned_cols=304  Identities=20%  Similarity=0.235  Sum_probs=250.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.++++++++++++.++++.+....+++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++++
T Consensus       114 ~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~  193 (444)
T PRK09564        114 RPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEI  193 (444)
T ss_pred             CCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHH
Confidence            57778999998889999999999999999887656899999999999999999999999999999999998885589999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEeccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL  161 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~l  161 (356)
                      .+.+++.|+++||++++++++++++.  ++.+..+.+ ++.++++|.+++|+|++|++++++.. +.. ++|+|.||+++
T Consensus       194 ~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~-~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~  270 (444)
T PRK09564        194 TDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVT-DKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYG  270 (444)
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEe-CCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCc
Confidence            99999999999999999999999964  344444544 45579999999999999999887755 665 56889999999


Q ss_pred             ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEE
Q 018416          162 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH  241 (356)
Q Consensus       162 ~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~  241 (356)
                      ||+.|+|||+|||+..+....+.+.+.+++..|.+||+.+|+||+|.... .....+.....++++.++++|.++.++..
T Consensus       271 ~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~-~~~~~~~~~~~~~~~~~a~vG~t~~~a~~  349 (444)
T PRK09564        271 ETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVS-FKGTLGSACIKVLDLEAARTGLTEEEAKK  349 (444)
T ss_pred             ccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCC-CCCcccceEEEECCEEEEEecCCHHHHHH
Confidence            99999999999999987766666666788999999999999999986532 22334444556889999999998764421


Q ss_pred             Ec---------cCC--------CCceEEEEe--eCCeEEEEEEeCCC-H-HHHHHHHHHHHcCCCcCcHHHHhhcCCCcc
Q 018416          242 YG---------NFS--------GTTFGAYWV--NKGRLVGSFLEGGT-K-EEYEAIAKATRLQPVVEDLAELETQGLGFA  300 (356)
Q Consensus       242 ~g---------~~~--------~~~~~~~~~--~~g~ilGa~~vg~~-~-~~~~~~a~ai~~~~~~~dl~~l~~~~~~ya  300 (356)
                      .|         ...        ..+|.++..  ++++|+|+|++|+. + +.++.++.+|++++|++||.+++   ..|+
T Consensus       350 ~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~---~~~~  426 (444)
T PRK09564        350 LGIDYKTVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMD---FCYA  426 (444)
T ss_pred             CCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcc---cccC
Confidence            11         111        123666554  68999999999985 5 44678899999999999999988   9999


Q ss_pred             cCcCCCCCCCCccc
Q 018416          301 LAVSQKPLPSTPVD  314 (356)
Q Consensus       301 p~~~~~~~~~~~~~  314 (356)
                      |+|+++.++.+..+
T Consensus       427 p~~~~~~~~~~~~~  440 (444)
T PRK09564        427 PPFARTWDALNVAG  440 (444)
T ss_pred             CCCCCCcCHHHHHH
Confidence            99999988766554

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=100.00  E-value=2.8e-41  Score=333.28  Aligned_cols=299  Identities=25%  Similarity=0.321  Sum_probs=249.1

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.++++++++++++.++++.++...+++++|||+|++|+|+|..|++.|.+||++++.++++.+.+++++
T Consensus       102 ~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~  181 (427)
T TIGR03385       102 SPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEM  181 (427)
T ss_pred             CCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHH
Confidence            68888999988889999999999999999886556899999999999999999999999999999999988544489999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEeccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL  161 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~l  161 (356)
                      .+.+.+.|++.||++++++.+++++.  ++.+  +.+.+|+++++|.+++++|.+|++++++.. +.. .+|+|.||+++
T Consensus       182 ~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~  257 (427)
T TIGR03385       182 NQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKF  257 (427)
T ss_pred             HHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCc
Confidence            99999999999999999999999975  3332  456788899999999999999999988764 655 56899999999


Q ss_pred             ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCC-CCCCeEEEEecCceEEEeecccceEE
Q 018416          162 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKF-DYLPFFYSRVFTLSWQFYGDNVGEVV  240 (356)
Q Consensus       162 ~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~~~~~  240 (356)
                      ||+.|+|||+|||+..+....+.+...+++..|.+||+.+|+||.|..  ..+ ...+...+.++++.++++|.++.++.
T Consensus       258 ~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~~--~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~  335 (427)
T TIGR03385       258 QTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGND--IEFKGVLGTNITKFFDLTIASTGVTENEAK  335 (427)
T ss_pred             EeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCCC--CCCCCcceeeEEEEcCeEEEEecCCHHHHH
Confidence            999999999999999877666665556788999999999999999864  334 33455667889999999998775322


Q ss_pred             EEc---------cCC--------CCceEEEEe--eCCeEEEEEEeCCC-HHH-HHHHHHHHHcCCCcCcHHHHhhcCCCc
Q 018416          241 HYG---------NFS--------GTTFGAYWV--NKGRLVGSFLEGGT-KEE-YEAIAKATRLQPVVEDLAELETQGLGF  299 (356)
Q Consensus       241 ~~g---------~~~--------~~~~~~~~~--~~g~ilGa~~vg~~-~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~y  299 (356)
                      ..|         ...        ..+|.++..  ++++|+|+|++|+. +.+ ++.++.||++++|++||.+++   +.|
T Consensus       336 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~  412 (427)
T TIGR03385       336 KLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFE---LAY  412 (427)
T ss_pred             HCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcc---ccc
Confidence            111         111        123666655  57999999999988 655 578899999999999999988   999


Q ss_pred             ccCcCCCCCCCC
Q 018416          300 ALAVSQKPLPST  311 (356)
Q Consensus       300 ap~~~~~~~~~~  311 (356)
                      +|+|.+..++.+
T Consensus       413 ~p~~~~~~~~~~  424 (427)
T TIGR03385       413 APPYSRVWDPLN  424 (427)
T ss_pred             CCCCCCccchHH
Confidence            999998865544

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=9.1e-40  Score=319.49  Aligned_cols=281  Identities=27%  Similarity=0.355  Sum_probs=239.4

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++++.+.++++++++++|+.++++.+.  .+++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++
T Consensus       111 ~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~--~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~  188 (396)
T PRK09754        111 AARPLPLLDALGERCFTLRHAGDAARLREVLQ--PERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPV  188 (396)
T ss_pred             CCCCCCCCCcCCCCEEecCCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHH
Confidence            46677888877789999999999999998876  5799999999999999999999999999999999999987679999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEEecccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  162 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~vd~~l~  162 (356)
                      .+.+.+.++++||++++++++++++.  ++. ..+++.+|+++++|.|++++|.+||+.+++.. +.. +++|.||++||
T Consensus       189 ~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~~~  264 (396)
T PRK09754        189 QRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEACR  264 (396)
T ss_pred             HHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCCCc
Confidence            99999999999999999999999974  222 35778899999999999999999999887644 443 46799999999


Q ss_pred             cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccce-EEE
Q 018416          163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE-VVH  241 (356)
Q Consensus       163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~-~~~  241 (356)
                      |++|+|||+|||+..+.+ +|...+.++|..|.+||++||.||+|..  ..+..+|++|+++|+++++++|....+ ...
T Consensus       265 ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~  341 (396)
T PRK09754        265 TCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAMLGLP--LPLLPPPWFWSDQYSDNLQFIGDMRGDDWLC  341 (396)
T ss_pred             cCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcCCC--CCCCCCCceEEEeCCccEEEeeCCCCCEEEE
Confidence            999999999999988776 7777788999999999999999999875  467789999999999999999965543 345


Q ss_pred             EccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhc
Q 018416          242 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ  295 (356)
Q Consensus       242 ~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~  295 (356)
                      .++.++..|..++.++|+|+|+.++|. ..+...+..+|+.+.++ +...|.++
T Consensus       342 ~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~  393 (396)
T PRK09754        342 RGNPETQKAIWFNLQNGVLIGAVTLNQ-GREIRPIRKWIQSGKTF-DAKLLIDE  393 (396)
T ss_pred             ecCCCCceEEEEEeeCCEEEEEEEECC-HHHHHHHHHHHHCCCCC-CHHHhcCc
Confidence            555554457777778999999999995 56677778889988876 45555533

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=1.2e-40  Score=326.32  Aligned_cols=276  Identities=25%  Similarity=0.323  Sum_probs=221.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+...+++-++.   ..+.     .-|++++|||||+||+|+|..++++|.+||++++.+++++. +|+++
T Consensus       146 ~p~~~~~~~~~~~~~~~s~~~---l~~~-----~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei  216 (454)
T COG1249         146 RPRIPPGPGIDGARILDSSDA---LFLL-----ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEI  216 (454)
T ss_pred             CCcCCCCCCCCCCeEEechhh---cccc-----cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHH
Confidence            588888888876666643332   2111     15899999999999999999999999999999999999997 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCCCCch---hhhccccc-ccCcEEE
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS---LFEGQLTL-EKGGIKV  157 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~---l~~~~l~~-~~g~I~v  157 (356)
                      ++.+.+.|++.|+++++++.+++++.++++  ..+.+++|+  ++++|.+++|+|++||++   |.+.+++. ++|+|.|
T Consensus       217 ~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~V  294 (454)
T COG1249         217 SKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKV  294 (454)
T ss_pred             HHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEe
Confidence            999999999999999999999999874444  567777776  799999999999999998   33445777 5689999


Q ss_pred             ecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEEecCceEEEeeccc
Q 018416          158 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME-PDKTDKFDYLPFFYSRVFTLSWQFYGDNV  236 (356)
Q Consensus       158 d~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~~~~~~~~~G~~~  236 (356)
                      |++++|++|+|||+|||+..+.          +...|..||++|++||++ .....++..+|+.++  .+..++++|+++
T Consensus       295 D~~~~Tnvp~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~if--t~Peia~VGlte  362 (454)
T COG1249         295 DDQMTTNVPGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVF--TDPEIASVGLTE  362 (454)
T ss_pred             CCccccCCCCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEE--CCCcceeeeCCH
Confidence            9888889999999999988763          467899999999999997 332346788997665  456679999988


Q ss_pred             ceEEEEc--------c----------CCCCceEEEEe--eCCeEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhc
Q 018416          237 GEVVHYG--------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQ  295 (356)
Q Consensus       237 ~~~~~~g--------~----------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~-~~~a~ai~~~~~~~dl~~l~~~  295 (356)
                      .++...+        .          .+..+|.|+..  ++++|||+|++|+++.++ ..++.||++++|++|+....  
T Consensus       363 ~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i--  440 (454)
T COG1249         363 EEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTI--  440 (454)
T ss_pred             HHHHhcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCC--
Confidence            6543221        0          11234766654  579999999999998876 56799999999999887766  


Q ss_pred             CCCcccCcCCC
Q 018416          296 GLGFALAVSQK  306 (356)
Q Consensus       296 ~~~yap~~~~~  306 (356)
                        ..+|++++.
T Consensus       441 --~~HPT~sE~  449 (454)
T COG1249         441 --HAHPTLSEA  449 (454)
T ss_pred             --CCCCChHHH
Confidence              566776654

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=100.00  E-value=3.1e-40  Score=314.58  Aligned_cols=293  Identities=51%  Similarity=0.882  Sum_probs=268.5

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      .|+.+++||.+.++++++|+++|+..+...+.  ..++||++|+|++|+|+|..|...+.+||+|++.+.++++.+.+++
T Consensus       180 ~~~~l~~pG~~~~nv~~ireieda~~l~~~~~--~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i  257 (478)
T KOG1336|consen  180 SAKTLDIPGVELKNVFYLREIEDANRLVAAIQ--LGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSI  257 (478)
T ss_pred             ccccCCCCCccccceeeeccHHHHHHHHHHhc--cCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHH
Confidence            57899999999999999999999999988886  4788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhccccc-ccCcEEEecccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQ  162 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~I~vd~~l~  162 (356)
                      ++.++++|+++||++++++.+.+++.+++|++..|.+.||+++++|+|++++|.+||+.+++.+..+ .+|+|.||+++|
T Consensus       258 ~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~  337 (478)
T KOG1336|consen  258 GQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQ  337 (478)
T ss_pred             HHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccccceecccCCEeehhcee
Confidence            9999999999999999999999999988899999999999999999999999999999998855333 789999999999


Q ss_pred             cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEE
Q 018416          163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY  242 (356)
Q Consensus       163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~  242 (356)
                      |++|+|||+|||+..+...++..+++.|++.|+.+|+.+...+...... .+.++|+|++.+|++.|.+.|.+.++.+.+
T Consensus       338 t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~-~~~~lPyf~t~~f~~~~~~~G~g~~~~v~~  416 (478)
T KOG1336|consen  338 TSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQD-AYDYLPYFYTRFFSLSWRFAGDGVGDVVLF  416 (478)
T ss_pred             eccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCcc-cccccchHHHHHhhhhccccCcCccceeee
Confidence            9999999999999999988887777999999999999887777655442 377999999999999999999999999999


Q ss_pred             ccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhcCCCcc
Q 018416          243 GNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFA  300 (356)
Q Consensus       243 g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~ya  300 (356)
                      |+.+...|+.+|.+ +..+++.+-+..+++.+.++.+++.+..++.+..+...+..|+
T Consensus       417 G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~~~a~l~~~~~~v~~~~~~~~~~~~~~  473 (478)
T KOG1336|consen  417 GDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVSQFAKLARQGPEVTSLKLLSKSGDSFW  473 (478)
T ss_pred             cccccccceeeEee-ccEEEEEeccCCChHHHHHHHHHhcCCcchhhhhccccchhhH
Confidence            98877779999999 9999999999888889999999999999998888776666554

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=2e-37  Score=325.58  Aligned_cols=310  Identities=19%  Similarity=0.227  Sum_probs=242.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+.+++|++++++|+.++++.+.  .+++++|||||++|+|+|..|+++|.+||++++.+++++..+|+++
T Consensus       112 ~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~--~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~  189 (847)
T PRK14989        112 YPWIPPIKGSETQDCFVYRTIEDLNAIEACAR--RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMG  189 (847)
T ss_pred             CcCCCCCCCCCCCCeEEECCHHHHHHHHHHHh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHH
Confidence            57788999999899999999999999988876  5789999999999999999999999999999999999987799999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEeccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL  161 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~l  161 (356)
                      ++.+++.|+++||++++++.++++..++++....+.+++|+++++|+|++++|++||+++++.. +.. ++|+|.||++|
T Consensus       190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l  269 (847)
T PRK14989        190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSC  269 (847)
T ss_pred             HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCC
Confidence            9999999999999999999999997533344567888999999999999999999999987654 665 67899999999


Q ss_pred             ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccce---
Q 018416          162 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE---  238 (356)
Q Consensus       162 ~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~---  238 (356)
                      |||+|+|||+|||+......+      .++..|.+||+.||+||+|.... ..........+++++.++++|...+.   
T Consensus       270 ~Ts~p~IYAiGD~a~~~~~~~------gl~~~a~~~a~vaa~~i~g~~~~-~~g~~~~~~lk~~G~~v~s~G~~~~~~~~  342 (847)
T PRK14989        270 QTSDPDIYAIGECASWNNRVF------GLVAPGYKMAQVAVDHLLGSENA-FEGADLSAKLKLLGVDVGGIGDAHGRTPG  342 (847)
T ss_pred             cCCCCCEEEeecceeEcCccc------ccHHHHHHHHHHHHHHhcCCCcC-CCCcccceEEEECCcceEecccccCCCCC
Confidence            999999999999999865433      46789999999999999987632 22223345678889999988854332   


Q ss_pred             --EEEEccCCCCceEEEEe--eCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCc-HHHHhhcCCC--cccCcCCCCCCCC
Q 018416          239 --VVHYGNFSGTTFGAYWV--NKGRLVGSFLEGGTKEEYEAIAKATRLQPVVED-LAELETQGLG--FALAVSQKPLPST  311 (356)
Q Consensus       239 --~~~~g~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~d-l~~l~~~~~~--yap~~~~~~~~~~  311 (356)
                        ...+.+.....|.++.+  ++++|+|++++|+.. ....+...+..+.++++ ...|..+...  -+|..+....|..
T Consensus       343 ~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~-~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~d~  421 (847)
T PRK14989        343 ARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTS-DYGNLLQLVLNAIELPENPDSLILPAHAGSGKPSIGVDKLPDS  421 (847)
T ss_pred             ceeEEEEcCCCCEEEEEEEECCCCEEEEEEEECCHH-HHHHHHHHHHcCCCCccchhheecCCCCCCCCCccccccCCCC
Confidence              23333333345888766  467999999999644 34444455566777654 3333321111  1244555678888


Q ss_pred             cccccccccccc
Q 018416          312 PVDGKTVPGLVL  323 (356)
Q Consensus       312 ~~~~~~~n~~~~  323 (356)
                      ..+|.|.|+-.+
T Consensus       422 a~iC~C~~Vt~~  433 (847)
T PRK14989        422 AQICSCFDVTKG  433 (847)
T ss_pred             CEEEEeecccHH
Confidence            899985555444

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=1.4e-37  Score=308.61  Aligned_cols=276  Identities=20%  Similarity=0.269  Sum_probs=218.6

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+...+   .+.+++..+..     .+++++|||+|++|+|+|..|+++|.+||++++++++++. +|+++
T Consensus       139 ~p~~p~i~g~~~~~~---~~~~~~~~l~~-----~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~  209 (451)
T PRK07846        139 RPVIPPVIADSGVRY---HTSDTIMRLPE-----LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDI  209 (451)
T ss_pred             CCCCCCCCCcCCccE---EchHHHhhhhh-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHH
Confidence            688889999764433   34555554432     4789999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh---ccccc-ccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~l~~-~~g~I~vd~  159 (356)
                      .+.+.+.+ +.||++++++++++++.+ ++. ..+.+.+|+++++|.|++++|++||++++.   .++.. ++|+|.||+
T Consensus       210 ~~~l~~l~-~~~v~i~~~~~v~~i~~~-~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~  286 (451)
T PRK07846        210 SERFTELA-SKRWDVRLGRNVVGVSQD-GSG-VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE  286 (451)
T ss_pred             HHHHHHHH-hcCeEEEeCCEEEEEEEc-CCE-EEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECC
Confidence            98887655 568999999999999863 333 346777888999999999999999999753   23665 678899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecccc
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVG  237 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~  237 (356)
                      ++||+.|+|||+|||+..+          ++...|.+||+.+++||++...  ..++..+|+.++  .++.++++|+++.
T Consensus       287 ~~~Ts~p~IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if--~~p~ia~vGlte~  354 (451)
T PRK07846        287 YQRTSAEGVFALGDVSSPY----------QLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVF--THPQIASVGLTEN  354 (451)
T ss_pred             CcccCCCCEEEEeecCCCc----------cChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEE--CCCCcEeEeCCHH
Confidence            9999999999999999754          3567899999999999997632  245667887644  4678999999886


Q ss_pred             eEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcC
Q 018416          238 EVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG  296 (356)
Q Consensus       238 ~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~  296 (356)
                      ++...|           +       .+..+|.++..  ++++|||+|++|+++.+ ++.++.||++++|++||.+..   
T Consensus       355 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---  431 (451)
T PRK07846        355 EARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQ---  431 (451)
T ss_pred             HHHhcCCCEEEEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCC---
Confidence            543211           1       11124666554  58999999999988655 578899999999999998876   


Q ss_pred             CCcccCcCCC
Q 018416          297 LGFALAVSQK  306 (356)
Q Consensus       297 ~~yap~~~~~  306 (356)
                      +.++|++++.
T Consensus       432 ~~~hPt~~e~  441 (451)
T PRK07846        432 YWIHPALPEV  441 (451)
T ss_pred             CccCCcHHHH
Confidence            5678888765

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=1.5e-36  Score=318.78  Aligned_cols=309  Identities=19%  Similarity=0.256  Sum_probs=246.4

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.++++++++++|+.++++.+.  .+++++|||||++|+|+|..|+++|.+||++++.++++++.+|+++
T Consensus       107 ~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~--~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~  184 (785)
T TIGR02374       107 YPFILPIPGADKKGVYVFRTIEDLDAIMAMAQ--RFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTA  184 (785)
T ss_pred             CcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHH
Confidence            57888999999999999999999999998876  5789999999999999999999999999999999999987799999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEEecccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  162 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~vd~~l~  162 (356)
                      +..+.+.|+++||++++++.++++..  ++.+..++++||+++++|+||+++|.+||+.+++.. +... ++|.||++||
T Consensus       185 ~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~  261 (785)
T TIGR02374       185 GRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQ  261 (785)
T ss_pred             HHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcc
Confidence            99999999999999999999999974  445567889999999999999999999999988654 5444 7899999999


Q ss_pred             cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc----e
Q 018416          163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG----E  238 (356)
Q Consensus       163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~----~  238 (356)
                      |++|+|||+|||+..+...+      .++.+|.+||+.+|.||+|...............+++++.++++|....    +
T Consensus       262 Ts~p~IyA~GD~a~~~~~~~------gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~~  335 (785)
T TIGR02374       262 TSDPDIYAVGECAEHNGRVY------GLVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETERTT  335 (785)
T ss_pred             cCCCCEEEeeecceeCCccc------ccHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCCCcE
Confidence            99999999999999765433      3678899999999999998752223334556678899999999996532    2


Q ss_pred             EEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhcCC--CcccCcCCCCCCCCccccc
Q 018416          239 VVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGL--GFALAVSQKPLPSTPVDGK  316 (356)
Q Consensus       239 ~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~--~yap~~~~~~~~~~~~~~~  316 (356)
                      .+...+.....|.+++.++++|+|++++|. ......+..+++.+..+.+...|..+.-  .-.|..+.+..|....+|.
T Consensus       336 ~~~~~d~~~~~y~kl~~~~~rLlGavlvgd-~~~~~~L~~li~~~~~l~~~~~ll~~~~~~~~~~~~~~~~~~d~~~vC~  414 (785)
T TIGR02374       336 SIKIYDEQKGIYKKLVLSDDKLLGAVLFGD-TSDYGRLLDMVLKQADISEDPAIIKPQISGPEAGGPGVEAMPDSEQICS  414 (785)
T ss_pred             EEEEEcCCCCEEEEEEEECCEEEEEEEECC-HHHHHHHHHHHHcCCCCCcChhhhcCCCCCCCCCCcccccCCCCCEEee
Confidence            233334444458888889999999999995 4567778888998887766445441110  0011122234556788887


Q ss_pred             cccccccCc
Q 018416          317 TVPGLVLGK  325 (356)
Q Consensus       317 ~~n~~~~~~  325 (356)
                       ||.++...
T Consensus       415 -C~~Vt~~~  422 (785)
T TIGR02374       415 -CNTVTKGA  422 (785)
T ss_pred             -CCCCcHHH
Confidence             55544433

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=1.8e-37  Score=308.99  Aligned_cols=276  Identities=16%  Similarity=0.222  Sum_probs=217.6

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++++.+.+++++.      ..+.+...  .+++++|||+|++|+|+|..|+++|.+||++++++++++. +|+++
T Consensus       148 ~p~~p~~~~~~~~~v~~~------~~~~~~~~--~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~  218 (461)
T PRK05249        148 RPYRPPDVDFDHPRIYDS------DSILSLDH--LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEI  218 (461)
T ss_pred             CCCCCCCCCCCCCeEEcH------HHhhchhh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHH
Confidence            466677777666667632      23322222  4799999999999999999999999999999999999997 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--h-ccccc-ccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~I~vd~  159 (356)
                      .+.+.+.|+++||++++++++++++.++++  ..+++.+|+++++|.|++++|++||++++  + .++.. ++|+|.||+
T Consensus       219 ~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~  296 (461)
T PRK05249        219 SDALSYHLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNE  296 (461)
T ss_pred             HHHHHHHHHHcCCEEEECCEEEEEEEeCCe--EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCC
Confidence            999999999999999999999999863333  34667788899999999999999999853  2 23555 568899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  239 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  239 (356)
                      ++||+.|+|||+|||+..+          .++..|.+||+.||.+|+|......+..+|+.++..+  .++++|+++.++
T Consensus       297 ~~~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p--~ia~vG~te~~a  364 (461)
T PRK05249        297 NYQTAVPHIYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIP--EISSVGKTEQEL  364 (461)
T ss_pred             CcccCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCC--cceEecCCHHHH
Confidence            9999999999999998654          3567899999999999998654456677888765543  679999987543


Q ss_pred             EEEc-----------cC-------CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCC
Q 018416          240 VHYG-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG  298 (356)
Q Consensus       240 ~~~g-----------~~-------~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~  298 (356)
                      ...|           ..       +..+|.++..  ++++|||+|++|+.+.+ ++.++.||++++|++||.++.   +.
T Consensus       365 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~  441 (461)
T PRK05249        365 TAAKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTT---FN  441 (461)
T ss_pred             HHcCCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc---cC
Confidence            2111           11       1134666554  58999999999988665 577899999999999999888   44


Q ss_pred             cccCcCCC
Q 018416          299 FALAVSQK  306 (356)
Q Consensus       299 yap~~~~~  306 (356)
                      | |.+++.
T Consensus       442 ~-Pt~~e~  448 (461)
T PRK05249        442 Y-PTMAEA  448 (461)
T ss_pred             C-CCHHHH
Confidence            4 776654

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=4.7e-37  Score=306.21  Aligned_cols=276  Identities=20%  Similarity=0.233  Sum_probs=217.6

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++++.+.+++++.+++.+...        .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus       150 ~p~~~p~~~~~~~~v~~~~~~~~~~~--------~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~  220 (466)
T PRK07845        150 SPRILPTAEPDGERILTWRQLYDLDE--------LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADA  220 (466)
T ss_pred             CCCCCCCCCCCCceEEeehhhhcccc--------cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHH
Confidence            46656666665667887665444321        3689999999999999999999999999999999999997 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--h-ccccc-ccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~I~vd~  159 (356)
                      ...+.+.|+++||++++++++++++.+++ . ..+.+.+|+++++|.|++++|++||+.++  + .++.. ++|+|.||+
T Consensus       221 ~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~-~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~  298 (466)
T PRK07845        221 AEVLEEVFARRGMTVLKRSRAESVERTGD-G-VVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDR  298 (466)
T ss_pred             HHHHHHHHHHCCcEEEcCCEEEEEEEeCC-E-EEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECC
Confidence            99999999999999999999999976333 3 34667788999999999999999999852  3 34665 568899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecccce
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGE  238 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~  238 (356)
                      ++||+.|+|||+|||+..+          +++..|..||+.|+.|+++... ...+..+|+.+  +.++.++++|+++.+
T Consensus       299 ~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~v--f~~p~~a~vGlte~~  366 (466)
T PRK07845        299 VSRTSVPGIYAAGDCTGVL----------PLASVAAMQGRIAMYHALGEAVSPLRLKTVASNV--FTRPEIATVGVSQAA  366 (466)
T ss_pred             CcccCCCCEEEEeeccCCc----------cchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEE--eCCCcceeecCCHHH
Confidence            9999999999999999754          4678999999999999998642 23445566433  236789999998753


Q ss_pred             EEEEc-----------cC-------CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCC
Q 018416          239 VVHYG-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGL  297 (356)
Q Consensus       239 ~~~~g-----------~~-------~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~  297 (356)
                      +...+           +.       ...+|.++..  ++|+|||+|++|+.+.+ ++.++.||++++|++||.++    +
T Consensus       367 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~----~  442 (466)
T PRK07845        367 IDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQT----F  442 (466)
T ss_pred             HHhCCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcC----c
Confidence            22111           10       1124666554  58999999999988665 57889999999999999884    4


Q ss_pred             CcccCcCCC
Q 018416          298 GFALAVSQK  306 (356)
Q Consensus       298 ~yap~~~~~  306 (356)
                      .++|++++.
T Consensus       443 ~~hPt~~e~  451 (466)
T PRK07845        443 TVYPSLSGS  451 (466)
T ss_pred             CCCCCHHHH
Confidence            788998874

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=4.6e-37  Score=306.22  Aligned_cols=278  Identities=20%  Similarity=0.260  Sum_probs=215.7

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+..++++.+++.+..        ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus       144 ~p~~p~i~G~~~~~~~~~~~~~~~~--------~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~  214 (463)
T PRK06370        144 RAAIPPIPGLDEVGYLTNETIFSLD--------ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDV  214 (463)
T ss_pred             CCCCCCCCCCCcCceEcchHhhCcc--------ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHH
Confidence            6888899998877776543332211        14799999999999999999999999999999999999997 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CCcEEecCeEEEecCCCCCch-h-hhc-cccc-ccCcEEEe
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPNTS-L-FEG-QLTL-EKGGIKVT  158 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~vi~a~G~~p~~~-l-~~~-~l~~-~~g~I~vd  158 (356)
                      .+.+.+.|+++||++++++++++++.++++....+... +++++++|.||+++|++||++ + ++. ++.. ++|+|.||
T Consensus       215 ~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd  294 (463)
T PRK06370        215 AAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD  294 (463)
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeEC
Confidence            99999999999999999999999986433322223333 345799999999999999998 4 333 3555 56889999


Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEEecCceEEEeecccc
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDNVG  237 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~~~~G~~~~  237 (356)
                      ++|||+.|+|||+|||+..+          .+...|.+||+.||+||++. .....+..+|+  ..+++..++++|+++.
T Consensus       295 ~~l~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~ia~vG~te~  362 (463)
T PRK06370        295 DQLRTTNPGIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGRRKVSDRIVPY--ATYTDPPLARVGMTEA  362 (463)
T ss_pred             cCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCCCcccccCCe--EEEcCCCcEeeeCCHH
Confidence            99999999999999998754          34678999999999999976 32234445665  4467888999999876


Q ss_pred             eEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcC
Q 018416          238 EVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG  296 (356)
Q Consensus       238 ~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~  296 (356)
                      ++...|           +       ....+|.++..  ++++|||+|++|+.+.+ ++.++.||+.++|++||.++.   
T Consensus       363 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---  439 (463)
T PRK06370        363 EARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAI---  439 (463)
T ss_pred             HHHHcCCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc---
Confidence            432211           1       11134666555  58999999999988655 578899999999999998876   


Q ss_pred             CCcccCcCCC
Q 018416          297 LGFALAVSQK  306 (356)
Q Consensus       297 ~~yap~~~~~  306 (356)
                       ..+|.+++.
T Consensus       440 -~~hPt~~e~  448 (463)
T PRK06370        440 -HIHPTVSEL  448 (463)
T ss_pred             -ccCCChHHH
Confidence             445666654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=9.4e-37  Score=304.45  Aligned_cols=275  Identities=17%  Similarity=0.257  Sum_probs=215.2

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHC---CCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~---G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+  .++   +.+++..+    . ..+++++|||||++|+|+|..|..+   |.+|||+++.+++++. +|
T Consensus       162 ~p~~p~i~G~~--~~~---~~~~~~~~----~-~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-~d  230 (486)
T TIGR01423       162 WPQMLGIPGIE--HCI---SSNEAFYL----D-EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-FD  230 (486)
T ss_pred             CCCCCCCCChh--hee---chhhhhcc----c-cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-cC
Confidence            57888899875  343   33444332    1 2579999999999999999877665   9999999999999986 89


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh---ccccc-ccCcEE
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIK  156 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~l~~-~~g~I~  156 (356)
                      +++++.+.+.|+++||++++++.+++++.++++ ...+.+.+++++++|.|++++|++||++++.   .++.. ++|+|.
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~  309 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQ  309 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEe
Confidence            999999999999999999999999999864333 2456677888999999999999999998642   33555 568899


Q ss_pred             EecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecc
Q 018416          157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDN  235 (356)
Q Consensus       157 vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~  235 (356)
                      ||+++||+.|+|||+|||+..+          .++..|++||+.+++||++... ...+..+|+.++..  +.++++|++
T Consensus       310 Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~--peia~vGlt  377 (486)
T TIGR01423       310 VDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSI--PPIGTCGLV  377 (486)
T ss_pred             cCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCC--CceEEeeCC
Confidence            9999999999999999998754          3566799999999999998542 23555688666544  468999998


Q ss_pred             cceEEEEcc-----------C-----C---CCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHh
Q 018416          236 VGEVVHYGN-----------F-----S---GTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE  293 (356)
Q Consensus       236 ~~~~~~~g~-----------~-----~---~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~  293 (356)
                      +.++...++           .     .   ..+|.++..  ++++|||+|++|+.+.+ ++.++.||+.++|++||.++.
T Consensus       378 e~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~  457 (486)
T TIGR01423       378 EEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTI  457 (486)
T ss_pred             HHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcc
Confidence            864422110           0     0   124666554  58999999999988655 578899999999999998876


Q ss_pred             hcCCCcccCcCCC
Q 018416          294 TQGLGFALAVSQK  306 (356)
Q Consensus       294 ~~~~~yap~~~~~  306 (356)
                          .++|.+++.
T Consensus       458 ----~~hPt~sE~  466 (486)
T TIGR01423       458 ----GVHPTSAEE  466 (486)
T ss_pred             ----cCCCCcHHH
Confidence                567777765

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=1.2e-36  Score=301.91  Aligned_cols=275  Identities=20%  Similarity=0.242  Sum_probs=213.6

Q ss_pred             CCccC-CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            4 KLEEF-GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~-~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|+.+ ++||.+.  .+   +.++...+    +. .+++++|||||++|+|+|..|++.|.+||++++++++++. +|++
T Consensus       140 ~p~~p~~i~g~~~--~~---~~~~~~~~----~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~  208 (450)
T TIGR01421       140 KPSFPENIPGAEL--GT---DSDGFFAL----EE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSM  208 (450)
T ss_pred             CCCCCCCCCCCce--eE---cHHHhhCc----cc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHH
Confidence            56677 7888642  22   22333222    11 4789999999999999999999999999999999999987 8999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCCCCCchhh--h-ccccc-ccCcEEE
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKV  157 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~I~v  157 (356)
                      +++.+.+.|+++||++++++.+++++.++++. ..+++++| +++++|.|++++|++||++++  + .++.. ++|+|.|
T Consensus       209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~v  287 (450)
T TIGR01421       209 ISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIV  287 (450)
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEe
Confidence            99999999999999999999999998643332 35677777 579999999999999999853  3 33555 5688999


Q ss_pred             ecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecc
Q 018416          158 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDN  235 (356)
Q Consensus       158 d~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~  235 (356)
                      |+++||+.|+|||+|||+..+          ..+..|.+||+.+|+||++...  ...+..+|+  ..++++.++++|++
T Consensus       288 d~~~~T~~p~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~f~~p~ia~vGlt  355 (450)
T TIGR01421       288 DEYQNTNVPGIYALGDVVGKV----------ELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPT--VVFSHPPIGTIGLT  355 (450)
T ss_pred             CCCCcCCCCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHHhcCCCCCccCcccCCe--EEeCCCceEEEeCC
Confidence            999999999999999999754          3467899999999999997532  134556775  44567789999998


Q ss_pred             cceEEEE-c---------c----------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHH
Q 018416          236 VGEVVHY-G---------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAEL  292 (356)
Q Consensus       236 ~~~~~~~-g---------~----------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l  292 (356)
                      +.++... +         .          ....+|.++..  ++|+|||+|++|+++.+ ++.++.||++++|++||.++
T Consensus       356 e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  435 (450)
T TIGR01421       356 EKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNT  435 (450)
T ss_pred             HHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence            8654221 1         0          01123655544  58999999999988665 57789999999999999886


Q ss_pred             hhcCCCcccCcCCC
Q 018416          293 ETQGLGFALAVSQK  306 (356)
Q Consensus       293 ~~~~~~yap~~~~~  306 (356)
                      .    ..+|.+++.
T Consensus       436 ~----~~hPt~~e~  445 (450)
T TIGR01421       436 V----AIHPTSSEE  445 (450)
T ss_pred             c----cCCCChHHH
Confidence            5    567777764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=9.5e-37  Score=302.79  Aligned_cols=276  Identities=21%  Similarity=0.282  Sum_probs=216.3

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++++.+  ++ .+.+.+++.++.+     .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus       142 ~p~~p~~~~~~--~~-~~~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~  212 (452)
T TIGR03452       142 RPYIPPAIADS--GV-RYHTNEDIMRLPE-----LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDI  212 (452)
T ss_pred             CCCCCCCCCCC--CC-EEEcHHHHHhhhh-----cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHH
Confidence            35544433322  33 3456777776643     3789999999999999999999999999999999998886 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh---ccccc-ccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~l~~-~~g~I~vd~  159 (356)
                      .+.+.+.+ +.||++++++++++++.++ +. ..+++.+|+++++|.+++++|++||++++.   .++.. ++|+|.||+
T Consensus       213 ~~~l~~~~-~~gI~i~~~~~V~~i~~~~-~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~  289 (452)
T TIGR03452       213 SDRFTEIA-KKKWDIRLGRNVTAVEQDG-DG-VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDE  289 (452)
T ss_pred             HHHHHHHH-hcCCEEEeCCEEEEEEEcC-Ce-EEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCC
Confidence            99888755 4689999999999998633 33 346677888999999999999999998753   23565 568899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecccc
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVG  237 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~  237 (356)
                      +|||+.|+|||+|||+..+          ++...|.+||+++|+||++...  ...+..+|+.+  ++++.++++|+++.
T Consensus       290 ~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i--~t~p~ia~vGlte~  357 (452)
T TIGR03452       290 YGRTSARGVWALGDVSSPY----------QLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAV--FTHPQIATVGLTEQ  357 (452)
T ss_pred             CcccCCCCEEEeecccCcc----------cChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEE--ECCCCeeeeeCCHH
Confidence            9999999999999999754          3566899999999999998642  34566788764  37888999999886


Q ss_pred             eEEEEc--------c----------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcC
Q 018416          238 EVVHYG--------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG  296 (356)
Q Consensus       238 ~~~~~g--------~----------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~  296 (356)
                      ++...|        .          .+..+|.++..  ++++|||+|++|+++.+ ++.++.||+.++|++||.++.   
T Consensus       358 ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~---  434 (452)
T TIGR03452       358 EAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQ---  434 (452)
T ss_pred             HHHhcCCCeEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCC---
Confidence            542211        0          11234666554  68999999999988765 577899999999999998876   


Q ss_pred             CCcccCcCCC
Q 018416          297 LGFALAVSQK  306 (356)
Q Consensus       297 ~~yap~~~~~  306 (356)
                      +.++|.+++.
T Consensus       435 ~~~hPt~~e~  444 (452)
T TIGR03452       435 YWIHPALPEV  444 (452)
T ss_pred             cccCCchHHH
Confidence            6678888764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=9.8e-37  Score=304.17  Aligned_cols=274  Identities=18%  Similarity=0.224  Sum_probs=213.5

Q ss_pred             CCccC-CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            4 KLEEF-GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~-~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|..+ .+|+ +.++++   +..++..++     ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|++
T Consensus       147 ~p~~~p~~~~-~~~~v~---~~~~~~~~~-----~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~  216 (471)
T PRK06467        147 RPIQLPFIPH-DDPRIW---DSTDALELK-----EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKD  216 (471)
T ss_pred             CCCCCCCCCC-CCCcEE---ChHHhhccc-----cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHH
Confidence            35433 3444 345555   334444432     14799999999999999999999999999999999999997 8999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC--C--cEEecCeEEEecCCCCCchhh--h-ccccc-ccCc
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD--G--NRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGG  154 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~--g--~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~  154 (356)
                      +++.+.+.|+++ |++++++.+++++.++++  ..+++.+  +  +++++|.|++++|++||++++  + .++.. ++|+
T Consensus       217 ~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~  293 (471)
T PRK06467        217 IVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG--IYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGF  293 (471)
T ss_pred             HHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE--EEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCc
Confidence            999999999998 999999999999864333  2344433  2  469999999999999999853  2 23555 5788


Q ss_pred             EEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeec
Q 018416          155 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD  234 (356)
Q Consensus       155 I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~  234 (356)
                      |.||++|||+.|+|||+|||+..+          .++..|.+||+.||.+|++.....++..+|+.+  ++++.++++|+
T Consensus       294 I~Vd~~~~t~~p~VyAiGDv~~~~----------~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~~--~~~p~ia~vGl  361 (471)
T PRK06467        294 IRVDKQCRTNVPHIFAIGDIVGQP----------MLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIA--YTEPEVAWVGL  361 (471)
T ss_pred             EeeCCCcccCCCCEEEehhhcCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--ECCCceeEEEC
Confidence            999999999999999999998644          357789999999999999865444556778654  78899999999


Q ss_pred             ccceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHh
Q 018416          235 NVGEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE  293 (356)
Q Consensus       235 ~~~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~  293 (356)
                      ++.++...|           .       ....+|.++.+  ++++|||+|++|+++.+ ++.++.||++++|++||.++.
T Consensus       362 te~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~  441 (471)
T PRK06467        362 TEKEAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTI  441 (471)
T ss_pred             CHHHHHhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc
Confidence            886443211           1       01123666555  57999999999988665 578899999999999998865


Q ss_pred             hcCCCcccCcCCC
Q 018416          294 TQGLGFALAVSQK  306 (356)
Q Consensus       294 ~~~~~yap~~~~~  306 (356)
                          .|+|+|++.
T Consensus       442 ----~~hPt~~e~  450 (471)
T PRK06467        442 ----HAHPTLHES  450 (471)
T ss_pred             ----cCCCChHHH
Confidence                788988864

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=1.2e-36  Score=307.21  Aligned_cols=284  Identities=18%  Similarity=0.226  Sum_probs=217.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+  .+++   .++...+    .  .+++++|||+|++|+|+|..|+++|.+||++++++++++. +|+++
T Consensus       213 ~P~~P~IpG~~--~v~t---s~~~~~l----~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-~d~~i  280 (561)
T PTZ00058        213 KPIFPDVKGKE--FTIS---SDDFFKI----K--EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-FDETI  280 (561)
T ss_pred             CCCCCCCCCce--eEEE---HHHHhhc----c--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-CCHHH
Confidence            57778899864  3432   2333222    2  3799999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCCCCCchhhhcc---cccccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~l~~~~---l~~~~g~I~vd~  159 (356)
                      .+.+.+.|+++||++++++.+.+++.++++.+. +.+.++ +++++|.|++++|++||++++...   +..++|+|.||+
T Consensus       281 ~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe  359 (561)
T PTZ00058        281 INELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDD  359 (561)
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECc
Confidence            999999999999999999999999864333332 344444 579999999999999999876422   233678899999


Q ss_pred             ccccCCCCEEEEccccccCcc-----------------------ccCccc-ccccHHHHHHHHHHHHHHHcCCCC-CCCC
Q 018416          160 RLQSSNSSVYAVGDVAAFPLK-----------------------LLGETR-RLEHVDSARKSAKHAVAAIMEPDK-TDKF  214 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~-----------------------~~g~~~-~~~~~~~A~~~g~~aa~~i~g~~~-~~~~  214 (356)
                      +|||+.|+|||+|||+..++.                       .++++. ..+++..|.+||+++|+||+|... ...+
T Consensus       360 ~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~  439 (561)
T PTZ00058        360 NQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNY  439 (561)
T ss_pred             CCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCC
Confidence            999999999999999984431                       334444 367889999999999999998632 2345


Q ss_pred             CCCCeEEEEecCceEEEeecccceEEEE-c---------cC--------------CCCceEEEEe--eCCeEEEEEEeCC
Q 018416          215 DYLPFFYSRVFTLSWQFYGDNVGEVVHY-G---------NF--------------SGTTFGAYWV--NKGRLVGSFLEGG  268 (356)
Q Consensus       215 ~~~p~~~~~~~~~~~~~~G~~~~~~~~~-g---------~~--------------~~~~~~~~~~--~~g~ilGa~~vg~  268 (356)
                      ..+|+.++  .++.++++|+++.++... |         ..              ...+|.++..  ++|+|||+|++|+
T Consensus       440 ~~ip~~vf--t~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ILG~~ivG~  517 (561)
T PTZ00058        440 KLIPSVIF--SHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLHIVGL  517 (561)
T ss_pred             CCCCeEEe--CCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEEEEEEECC
Confidence            66786533  446789999988644321 1         00              0123666554  6899999999998


Q ss_pred             CHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          269 TKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       269 ~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      ++.+ ++.++.||++++|++||.++.    ..+|.+++.
T Consensus       518 ~a~elI~~~a~ai~~~~t~~dl~~~~----~~hPt~~e~  552 (561)
T PTZ00058        518 NADEILQGFAVALKMNATKADFDETI----PIHPTAAEE  552 (561)
T ss_pred             CHHHHHHHHHHHHHcCCCHHHHhhcc----cCCCChHHH
Confidence            8665 578899999999999998865    567777765

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=1.3e-36  Score=303.06  Aligned_cols=267  Identities=24%  Similarity=0.282  Sum_probs=209.9

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+..++++..   ++..+    . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus       139 ~p~~p~i~G~~~~~~~~~~---~~~~~----~-~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~  209 (463)
T TIGR02053       139 RPAIPPIPGLKEAGYLTSE---EALAL----D-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEI  209 (463)
T ss_pred             CCCCCCCCCcccCceECch---hhhCc----c-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHH
Confidence            5788899998766665432   33222    1 14689999999999999999999999999999999999997 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---CCcEEecCeEEEecCCCCCch-h-hhc-cccc-ccCcEE
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGNRLPTDMVVVGIGIRPNTS-L-FEG-QLTL-EKGGIK  156 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~~i~~D~vi~a~G~~p~~~-l-~~~-~l~~-~~g~I~  156 (356)
                      ...+++.|++.||++++++++++++.++++  ..+++.   +++++++|.|++++|++|+++ + ++. .+.. ++|+|.
T Consensus       210 ~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~  287 (463)
T TIGR02053       210 SAAVEEALAEEGIEVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGIL  287 (463)
T ss_pred             HHHHHHHHHHcCCEEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEe
Confidence            999999999999999999999999863332  233332   236799999999999999998 4 332 3555 568899


Q ss_pred             EecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEEecCceEEEeecc
Q 018416          157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDN  235 (356)
Q Consensus       157 vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~~~~G~~  235 (356)
                      ||++|||+.|+|||+|||+..+          .++..|.+||+.||.||++. ....++..+|.  ..++++.++++|++
T Consensus       288 vd~~~~Ts~~~VyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~~a~vGlt  355 (463)
T TIGR02053       288 VDETLRTSNPGIYAAGDVTGGL----------QLEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPAVASVGLT  355 (463)
T ss_pred             ECCCccCCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCceEEEeCC
Confidence            9999999999999999999753          35778999999999999986 43334455674  56678899999998


Q ss_pred             cceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHh
Q 018416          236 VGEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE  293 (356)
Q Consensus       236 ~~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~  293 (356)
                      +.++...|           .       .+..+|.++..  ++++|||+|++|+++.+ ++.++.||+.++|++||.++.
T Consensus       356 e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~  434 (463)
T TIGR02053       356 EAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTL  434 (463)
T ss_pred             HHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc
Confidence            75432111           1       11134666654  58999999999988665 577899999999999998875

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN02507 glutathione reductase

Probab=100.00  E-value=2.4e-36  Score=302.88  Aligned_cols=274  Identities=19%  Similarity=0.256  Sum_probs=214.5

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+.  .   .+.+++..++.     .+++++|||+|++|+|+|..|++.|.+||++++.+++++. +|+++
T Consensus       178 ~p~~p~ipG~~~--~---~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~  246 (499)
T PLN02507        178 RAQRPNIPGKEL--A---ITSDEALSLEE-----LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEM  246 (499)
T ss_pred             CCCCCCCCCccc--e---echHHhhhhhh-----cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHH
Confidence            577788888642  2   24455555432     4789999999999999999999999999999999999987 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--hc-cccc-ccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~-~l~~-~~g~I~vd~  159 (356)
                      ++.+.+.|+++||++++++++++++..+++  ..+.+.+|+++++|.|++++|++||++++  +. ++.. ++|+|.||+
T Consensus       247 ~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~  324 (499)
T PLN02507        247 RAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE  324 (499)
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC
Confidence            999999999999999999999999863333  34667788899999999999999999863  33 3555 568899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEEeecccce
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGE  238 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~  238 (356)
                      ++||+.|+|||+|||+...          .++..|.+||+.+++||++.... ..+..+|+.++.  ...++++|+++.+
T Consensus       325 ~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~--~p~ia~vGlte~e  392 (499)
T PLN02507        325 YSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFC--IPPLSVVGLSEEE  392 (499)
T ss_pred             CCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEEC--CCccEEEeCCHHH
Confidence            9999999999999999743          35678999999999999976431 234456744432  3368999998754


Q ss_pred             EEEE-c--------c--C--------CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcC
Q 018416          239 VVHY-G--------N--F--------SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG  296 (356)
Q Consensus       239 ~~~~-g--------~--~--------~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~  296 (356)
                      +... +        .  .        ...+|.++.+  ++++|||+|++|+++.+ ++.++.||+.++|++||.++.   
T Consensus       393 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~---  469 (499)
T PLN02507        393 AVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTV---  469 (499)
T ss_pred             HHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcC---
Confidence            3321 0        0  0        1123666554  58999999999988654 678899999999999998754   


Q ss_pred             CCcccCcCCC
Q 018416          297 LGFALAVSQK  306 (356)
Q Consensus       297 ~~yap~~~~~  306 (356)
                       .++|.+++.
T Consensus       470 -~~hPt~~E~  478 (499)
T PLN02507        470 -GIHPSAAEE  478 (499)
T ss_pred             -cCCCChHHH
Confidence             677888776

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=100.00  E-value=6.5e-37  Score=303.87  Aligned_cols=310  Identities=22%  Similarity=0.271  Sum_probs=263.1

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      .|-.+++||.++++|+.+|+++|...+.+.-+  ..++.+|||||..|+|+|..|...|.+|++++..+.+|.+++|+..
T Consensus       112 ~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar--~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~a  189 (793)
T COG1251         112 YPFILPIPGSDLPGVFVYRTIDDVEAMLDCAR--NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTA  189 (793)
T ss_pred             cccccCCCCCCCCCeeEEecHHHHHHHHHHHh--ccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHH
Confidence            46778899999999999999999999998843  4677999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcccccccCcEEEeccccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQS  163 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~~~g~I~vd~~l~t  163 (356)
                      ...+++.|+++|++++++...+++.+  ++.+..+.++||..+++|+|++++|.+||++++.......+.+|.||++|||
T Consensus       190 g~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvvnd~mqT  267 (793)
T COG1251         190 GRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDYMQT  267 (793)
T ss_pred             HHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCCCeeecccccc
Confidence            99999999999999999999888864  6677899999999999999999999999999998774443449999999999


Q ss_pred             CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeeccc----ceE
Q 018416          164 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNV----GEV  239 (356)
Q Consensus       164 s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~----~~~  239 (356)
                      |+|+|||+|+|+++....+      .++.++.+|++.+|+++++...+.....+++...++.+.++.+.|.-.    .+.
T Consensus       268 sdpdIYAvGEcae~~g~~y------GLVaP~yeq~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~  341 (793)
T COG1251         268 SDPDIYAVGECAEHRGKVY------GLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQETEGAES  341 (793)
T ss_pred             cCCCeeehhhHHHhcCccc------eehhHHHHHHHHHHHHhccCcccccccccchhhhcccccceeeccchhhcCCCce
Confidence            9999999999999987665      468899999999999999986544555677777888888888888543    345


Q ss_pred             EEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCCCCCCCcccccccc
Q 018416          240 VHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVP  319 (356)
Q Consensus       240 ~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~~~~~~~~~~~~~n  319 (356)
                      +.+.|.....|.++.+++++|+|+.++|. ...-..+-.+|..+.+++++.+..-....+.|+-+.+..|.+...|. ||
T Consensus       342 iv~~D~~~~iYKrlvL~dd~IvgavL~GD-t~d~~~l~~li~~~~~~se~r~~li~~~~~~~~~~v~~lpd~~~IC~-Cn  419 (793)
T COG1251         342 IVFRDEQRGIYKKLVLKDDKIVGAVLYGD-TSDGGWLLDLILKGADISEIRDTLILPQGSAPSLGVAALPDSAQICG-CN  419 (793)
T ss_pred             EEEecccccceeEEEEeCCeEEEEEEEee-cccchHHHHHHhcCCCccccchhhccccccCCccchhhCCCCCeeec-CC
Confidence            55656655569999999999999999995 44456778889999999887655433344578788888888998887 55


Q ss_pred             ccccCc
Q 018416          320 GLVLGK  325 (356)
Q Consensus       320 ~~~~~~  325 (356)
                      .++...
T Consensus       420 ~VtKG~  425 (793)
T COG1251         420 GVTKGA  425 (793)
T ss_pred             CccHHH
Confidence            555443

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=2.5e-36  Score=299.57  Aligned_cols=274  Identities=20%  Similarity=0.262  Sum_probs=214.9

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.  .+   +.+++..+.     ..+++++|||+|++|+|+|..|++.|.+||++++++.+++. +++++
T Consensus       141 ~p~~p~i~G~~~--~~---~~~~~~~l~-----~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~  209 (446)
T TIGR01424       141 RPQKPNLPGHEL--GI---TSNEAFHLP-----TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDM  209 (446)
T ss_pred             cCCCCCCCCccc--ee---chHHhhccc-----ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHH
Confidence            577788888652  22   333443322     14789999999999999999999999999999999999987 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--h-ccccc-ccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~I~vd~  159 (356)
                      .+.+.+.|+++||++++++++++++.++++  ..+++.+|+++++|.|++++|++||++.+  + .+++. ++|+|.||+
T Consensus       210 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~  287 (446)
T TIGR01424       210 RALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDE  287 (446)
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCC
Confidence            999999999999999999999999864333  34667788899999999999999999853  2 33555 568899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecccce
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGE  238 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~  238 (356)
                      ++||+.|+|||+|||+...          .++..|.+||+.+++||++... ...+..+|+.++..  +.++++|+++.+
T Consensus       288 ~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~--p~ia~vG~te~~  355 (446)
T TIGR01424       288 YSRTSIPSIYAVGDVTDRI----------NLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQ--PPLGTVGLTEEE  355 (446)
T ss_pred             CCccCCCCEEEeeccCCCc----------cchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCC--chhEEEECCHHH
Confidence            9999999999999998643          4577899999999999998542 24556788766543  378999998754


Q ss_pred             EEEEc------------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcC
Q 018416          239 VVHYG------------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG  296 (356)
Q Consensus       239 ~~~~g------------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~  296 (356)
                      +...+            .       ....+|.++..  ++++|||+|++|+++.+ ++.++.||++++|++||.++.   
T Consensus       356 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---  432 (446)
T TIGR01424       356 AREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTV---  432 (446)
T ss_pred             HHhhcCCCEEEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcc---
Confidence            33221            0       01124666554  68999999999988665 578899999999999998855   


Q ss_pred             CCcccCcCCC
Q 018416          297 LGFALAVSQK  306 (356)
Q Consensus       297 ~~yap~~~~~  306 (356)
                       ..+|.+++.
T Consensus       433 -~~hPt~~e~  441 (446)
T TIGR01424       433 -GIHPSSAEE  441 (446)
T ss_pred             -ccCCChHHH
Confidence             567877764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=2.7e-36  Score=298.99  Aligned_cols=275  Identities=19%  Similarity=0.233  Sum_probs=214.1

Q ss_pred             CCccCCCCCCC-CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            4 KLEEFGLSGSD-AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~~ipG~~-~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|..+++||.+ .+++++..   +   +.+. + ..+++++|||+|++|+|+|..|++.|.+||++++++++++. ++++
T Consensus       130 ~p~~p~i~G~~~~~~v~~~~---~---~~~~-~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~  200 (441)
T PRK08010        130 QTVVPPIPGITTTPGVYDST---G---LLNL-K-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRD  200 (441)
T ss_pred             cCCCCCCCCccCCCCEEChh---H---hhcc-c-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHH
Confidence            57788999974 46776432   2   2221 1 25789999999999999999999999999999999999987 7999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--h-ccccc-ccCcEEEe
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVT  158 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~I~vd  158 (356)
                      +.+.+.+.|+++||++++++++++++.+ ++.+ .+.++++ ++++|.+++++|++||++++  + .++.+ ++|+|.||
T Consensus       201 ~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd  277 (441)
T PRK08010        201 IADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVD  277 (441)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEEC
Confidence            9999999999999999999999999863 3332 3555444 58999999999999999853  2 23555 56889999


Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEEecCceEEEeeccc
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNV  236 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~  236 (356)
                      +++||+.|+|||+|||+..+.          +...|..||+.+++||+|....  ..+..+|+  ..++++.++++|+++
T Consensus       278 ~~~~Ts~~~IyA~GD~~~~~~----------~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~--~~~~~p~ia~vGlte  345 (441)
T PRK08010        278 KYLHTTADNIWAMGDVTGGLQ----------FTYISLDDYRIVRDELLGEGKRSTDDRKNVPY--SVFMTPPLSRVGMTE  345 (441)
T ss_pred             CCcccCCCCEEEeeecCCCcc----------chhHHHHHHHHHHHHHcCCCCcccCccCCCCE--EEECCCCceeeeCCH
Confidence            999999999999999998653          4567888999999999985221  23445664  457889999999998


Q ss_pred             ceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhc
Q 018416          237 GEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQ  295 (356)
Q Consensus       237 ~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~  295 (356)
                      .++...|           +       .+..+|.++..  ++|+|||+|++|+++.+ ++.++.||++++|++||.+.   
T Consensus       346 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~---  422 (441)
T PRK08010        346 EQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQ---  422 (441)
T ss_pred             HHHHHcCCCeEEEEEecCcChhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc---
Confidence            6443211           1       11123666554  68999999999988655 67889999999999998854   


Q ss_pred             CCCcccCcCCC
Q 018416          296 GLGFALAVSQK  306 (356)
Q Consensus       296 ~~~yap~~~~~  306 (356)
                       +.++|++++.
T Consensus       423 -~~~hPt~~e~  432 (441)
T PRK08010        423 -IFTHPSMSES  432 (441)
T ss_pred             -cccCCchHHH
Confidence             4788888764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=3.6e-36  Score=299.79  Aligned_cols=272  Identities=24%  Similarity=0.305  Sum_probs=212.3

Q ss_pred             CCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHH
Q 018416           10 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEE   89 (356)
Q Consensus        10 ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~   89 (356)
                      +||.+.++. .+.+.+++.++..     .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+++
T Consensus       149 ~pg~~~~~~-~v~~~~~~~~~~~-----~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~  221 (462)
T PRK06416        149 LPGIEIDGR-VIWTSDEALNLDE-----VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAER  221 (462)
T ss_pred             CCCCCCCCC-eEEcchHhhCccc-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHH
Confidence            466654443 2234455544321     4689999999999999999999999999999999999997 89999999999


Q ss_pred             HHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC---cEEecCeEEEecCCCCCchhh---hcccccccCcEEEeccccc
Q 018416           90 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF---EGQLTLEKGGIKVTGRLQS  163 (356)
Q Consensus        90 ~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~l~---~~~l~~~~g~I~vd~~l~t  163 (356)
                      .|+++||++++++++++++.++ +. ..+.+.++   +++++|.||+++|++|++.++   ..++..++|+|.||+++||
T Consensus       222 ~l~~~gV~i~~~~~V~~i~~~~-~~-v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t  299 (462)
T PRK06416        222 ALKKRGIKIKTGAKAKKVEQTD-DG-VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRT  299 (462)
T ss_pred             HHHHcCCEEEeCCEEEEEEEeC-CE-EEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCcc
Confidence            9999999999999999998633 33 34555555   679999999999999999865   2335545788999999999


Q ss_pred             CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc
Q 018416          164 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG  243 (356)
Q Consensus       164 s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g  243 (356)
                      +.|+|||+|||+..+          +.+..|..||+.+|.||++.....++..+|  ...++++.++++|+++.++...|
T Consensus       300 ~~~~VyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~--~~~~~~~~~a~vG~te~~a~~~g  367 (462)
T PRK06416        300 NVPNIYAIGDIVGGP----------MLAHKASAEGIIAAEAIAGNPHPIDYRGIP--AVTYTHPEVASVGLTEAKAKEEG  367 (462)
T ss_pred             CCCCEEEeeecCCCc----------chHHHHHHHHHHHHHHHcCCCCCCCCCCCC--eEEECCCceEEEeCCHHHHHhcC
Confidence            999999999999743          457889999999999999864323333344  56678999999999876542211


Q ss_pred             -----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccC
Q 018416          244 -----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALA  302 (356)
Q Consensus       244 -----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~  302 (356)
                                 .       ....+|.++.+  ++++|||+|++|+.+.+ ++.++.||+.++|++||.++.    .++|+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt  443 (462)
T PRK06416        368 FDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTI----HPHPT  443 (462)
T ss_pred             CCeEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----cCCCC
Confidence                       0       01123666544  68999999999988665 578899999999999998865    56788


Q ss_pred             cCCC
Q 018416          303 VSQK  306 (356)
Q Consensus       303 ~~~~  306 (356)
                      +++.
T Consensus       444 ~~e~  447 (462)
T PRK06416        444 LSEA  447 (462)
T ss_pred             HHHH
Confidence            7754

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=4.5e-36  Score=299.39  Aligned_cols=274  Identities=21%  Similarity=0.252  Sum_probs=214.4

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+...+++   ..++..+.     ..+++++|||+|++|+|+|..|+++|.+||++++ +++++. +++++
T Consensus       151 ~p~~p~i~G~~~~~~~~---~~~~~~l~-----~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~  220 (468)
T PRK14694        151 RPAEPPVPGLAETPYLT---STSALELD-----HIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAV  220 (468)
T ss_pred             CCCCCCCCCCCCCceEc---chhhhchh-----cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHH
Confidence            68888999986444432   23443332     1478999999999999999999999999999987 567776 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh---cccccccCcEEEecc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTLEKGGIKVTGR  160 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~l~~~~g~I~vd~~  160 (356)
                      .+.+++.|+++||++++++.+++++.+ ++. ..+.+.+ .++++|.|++++|++||++++.   .++..++|+|.||++
T Consensus       221 ~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~  297 (468)
T PRK14694        221 GEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNA-GTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEH  297 (468)
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECC-CEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCC
Confidence            999999999999999999999999763 332 2355444 4799999999999999998752   234456788999999


Q ss_pred             cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE
Q 018416          161 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV  240 (356)
Q Consensus       161 l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~  240 (356)
                      +||++|+|||+|||+..+.          .+..|..||+.||.||++.....++..+|.+  .++++.++++|+++.++.
T Consensus       298 ~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~--~~~~p~~a~vGlte~~a~  365 (468)
T PRK14694        298 LQTTVSGIYAAGDCTDQPQ----------FVYVAAAGGSRAAINMTGGDASLDLSAMPEV--IFTDPQVATVGLSEAEAQ  365 (468)
T ss_pred             cccCCCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHhcCCCcccccCCCCeE--EECCCCeEEeeCCHHHHH
Confidence            9999999999999997553          4567889999999999986544455567754  478889999999876432


Q ss_pred             EEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCc
Q 018416          241 HYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGF  299 (356)
Q Consensus       241 ~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~y  299 (356)
                      ..|           .       .+..+|.++..  ++|+|||+|++|+++.+ ++.++.||+++.|++||.++.    .+
T Consensus       366 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~  441 (468)
T PRK14694        366 AQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADEL----FP  441 (468)
T ss_pred             HcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccc----cC
Confidence            111           0       11234766554  68999999999987655 578899999999999999987    45


Q ss_pred             ccCcCCC
Q 018416          300 ALAVSQK  306 (356)
Q Consensus       300 ap~~~~~  306 (356)
                      +|.+++.
T Consensus       442 hPt~~e~  448 (468)
T PRK14694        442 YLTMVEG  448 (468)
T ss_pred             CCchHHH
Confidence            7777764

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=3.7e-36  Score=299.27  Aligned_cols=275  Identities=18%  Similarity=0.191  Sum_probs=213.9

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++++.+.+.+++.   +++..+.     ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus       143 ~p~~~p~~~~~~~~v~~~---~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~  213 (458)
T PRK06912        143 EPTELPFAPFDGKWIINS---KHAMSLP-----SIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDI  213 (458)
T ss_pred             CCCCCCCCCCCCCeEEcc---hHHhCcc-----ccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHH
Confidence            466677787765555533   3333321     14789999999999999999999999999999999999997 79999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCchhh--h-cccccccCcEEEe
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLF--E-GQLTLEKGGIKVT  158 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~l~--~-~~l~~~~g~I~vd  158 (356)
                      .+.+.+.|+++||++++++++++++.+ +.. ..+.. +|  +++++|.|++++|++|+++.+  + .++...+++|.||
T Consensus       214 ~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~-v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd  290 (458)
T PRK06912        214 AHILREKLENDGVKIFTGAALKGLNSY-KKQ-ALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVN  290 (458)
T ss_pred             HHHHHHHHHHCCCEEEECCEEEEEEEc-CCE-EEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeC
Confidence            999999999999999999999999753 332 22332 34  369999999999999999753  2 2355545569999


Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccce
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE  238 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~  238 (356)
                      +++||+.|+|||+|||+..+          +++..|.+||+.||.+++|......+..+|..+  ++++.++++|+++.+
T Consensus       291 ~~~~ts~~~VyA~GD~~~~~----------~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v--~~~p~~a~vGlte~~  358 (458)
T PRK06912        291 EHMQTNVPHIYACGDVIGGI----------QLAHVAFHEGTTAALHASGEDVKVNYHAVPRCI--YTSPEIASVGLTEKQ  358 (458)
T ss_pred             CCeecCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEE--ecCchhEEeeCCHHH
Confidence            99999999999999999643          457789999999999999865434456788654  567889999998754


Q ss_pred             EEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCC
Q 018416          239 VVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGL  297 (356)
Q Consensus       239 ~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~  297 (356)
                      +...+           .       ....+|.++.+  ++++|||+|++|+.+.+ ++.++.||++++|++||.++.    
T Consensus       359 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----  434 (458)
T PRK06912        359 AREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFI----  434 (458)
T ss_pred             HHHCCCCeEEEEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----
Confidence            32111           0       01123666554  58999999999988665 578899999999999988765    


Q ss_pred             CcccCcCCC
Q 018416          298 GFALAVSQK  306 (356)
Q Consensus       298 ~yap~~~~~  306 (356)
                      .|+|+|++.
T Consensus       435 ~~hPt~~e~  443 (458)
T PRK06912        435 AAHPTLSEA  443 (458)
T ss_pred             ccCCCHHHH
Confidence            789998875

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=4.7e-36  Score=297.99  Aligned_cols=275  Identities=19%  Similarity=0.231  Sum_probs=214.5

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+  .+++   .++...+    . ..+++++|||+|++|+|+|..|++.|.+||++++++.+++. +++++
T Consensus       142 ~p~~p~i~g~~--~~~~---~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~  210 (450)
T PRK06116        142 RPSIPDIPGAE--YGIT---SDGFFAL----E-ELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDI  210 (450)
T ss_pred             CCCCCCCCCcc--eeEc---hhHhhCc----c-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHH
Confidence            57778888864  3332   2222221    1 14789999999999999999999999999999999998886 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh---hccccc-ccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~---~~~l~~-~~g~I~vd~  159 (356)
                      .+.+.+.|+++||++++++++++++.++++.+ .+++.+|+++++|.|++++|++|+++.+   ..++.. ++|+|.||+
T Consensus       211 ~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~  289 (450)
T PRK06116        211 RETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDE  289 (450)
T ss_pred             HHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCC
Confidence            99999999999999999999999987444433 4677888999999999999999999842   233555 568899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecccc
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVG  237 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~  237 (356)
                      ++||+.|+|||+|||+..+          +++..|++||+.||+||++...  ...+..+|+.++  ..+.++++|+++.
T Consensus       290 ~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if--~~p~~a~vGlte~  357 (450)
T PRK06116        290 YQNTNVPGIYAVGDVTGRV----------ELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVF--SHPPIGTVGLTEE  357 (450)
T ss_pred             CCCcCCCCEEEEeecCCCc----------CcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEe--CCCccEEeeCCHH
Confidence            9999999999999998643          4577899999999999998543  235567886553  2347899999875


Q ss_pred             eEEEEc----------c----------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhh
Q 018416          238 EVVHYG----------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELET  294 (356)
Q Consensus       238 ~~~~~g----------~----------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~  294 (356)
                      ++...+          .          .+..+|.++.+  ++++|||+|++|+.+.+ ++.++.||+.++|++||.+.. 
T Consensus       358 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~-  436 (450)
T PRK06116        358 EAREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTV-  436 (450)
T ss_pred             HHHHhCCCCcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccc-
Confidence            332111          0          11234666655  58999999999988655 678899999999999998865 


Q ss_pred             cCCCcccCcCCC
Q 018416          295 QGLGFALAVSQK  306 (356)
Q Consensus       295 ~~~~yap~~~~~  306 (356)
                         ..+|.+++.
T Consensus       437 ---~~hPt~~e~  445 (450)
T PRK06116        437 ---AIHPTAAEE  445 (450)
T ss_pred             ---ccCCChHHH
Confidence               567777654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=8e-36  Score=305.06  Aligned_cols=278  Identities=18%  Similarity=0.202  Sum_probs=212.9

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++++.+.+++++.   +++..+..     .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus       285 ~P~~P~~~~~~~~~V~ts---~d~~~l~~-----lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-~d~ei  355 (659)
T PTZ00153        285 TPNIPDNIEVDQKSVFTS---DTAVKLEG-----LQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-LDADV  355 (659)
T ss_pred             CCCCCCCCCCCCCcEEeh---HHhhhhhh-----cCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-CCHHH
Confidence            456666666666667754   45555432     3789999999999999999999999999999999999997 89999


Q ss_pred             HHHHHHHH-HhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-------C--------cEEecCeEEEecCCCCCchhh--h
Q 018416           84 ASYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-------G--------NRLPTDMVVVGIGIRPNTSLF--E  145 (356)
Q Consensus        84 ~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-------g--------~~i~~D~vi~a~G~~p~~~l~--~  145 (356)
                      .+.+.+.+ +++||++++++.+++++.++++....+.+.+       +        +++++|.||+++|++||++.+  +
T Consensus       356 s~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~  435 (659)
T PTZ00153        356 AKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLD  435 (659)
T ss_pred             HHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCch
Confidence            99999876 6799999999999999864333323343321       1        379999999999999999864  2


Q ss_pred             c-ccccccCcEEEecccccC------CCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC----------
Q 018416          146 G-QLTLEKGGIKVTGRLQSS------NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP----------  208 (356)
Q Consensus       146 ~-~l~~~~g~I~vd~~l~ts------~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~----------  208 (356)
                      . .+..++|+|.||++|||+      +|+|||+|||+..+          +++..|.+||+.+++||++.          
T Consensus       436 ~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~----------~La~~A~~qg~~aa~ni~g~~~~~~~~~~~  505 (659)
T PTZ00153        436 KLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ----------MLAHTASHQALKVVDWIEGKGKENVNINVE  505 (659)
T ss_pred             hcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc----------cCHHHHHHHHHHHHHHHcCCCccccccccc
Confidence            2 355566889999999997      69999999998543          46778999999999999986          


Q ss_pred             ---CCCCCCCCCCeEEEEecCceEEEeecccceEEEEc-------------cC-------C-------------------
Q 018416          209 ---DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-------------NF-------S-------------------  246 (356)
Q Consensus       209 ---~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-------------~~-------~-------------------  246 (356)
                         .....+..+|.  ..++++.++++|+++.++...+             ..       +                   
T Consensus       506 ~~~~~~~~~~~iP~--~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~  583 (659)
T PTZ00153        506 NWASKPIIYKNIPS--VCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNT  583 (659)
T ss_pred             cccccccccCcCCE--EEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhcccccccccccccccccccccc
Confidence               22233455664  4567788999999876432211             00       0                   


Q ss_pred             ---CCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          247 ---GTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       247 ---~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                         ..+|.++..  ++++|||+|++|+++.+ ++.++.||++++|++||.++.    .++|++++.
T Consensus       584 ~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~----~~hPT~sE~  645 (659)
T PTZ00153        584 VDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMV----HSHPTISEV  645 (659)
T ss_pred             ccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----CCCCChHHH
Confidence               234666555  68999999999998765 567899999999999998865    466777664

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=9.3e-36  Score=296.85  Aligned_cols=275  Identities=20%  Similarity=0.235  Sum_probs=210.1

Q ss_pred             CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHH
Q 018416            9 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE   88 (356)
Q Consensus         9 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~   88 (356)
                      ++||.+.++.+.+.+ +++..+    . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++.+.++
T Consensus       150 ~ipg~~~~~~~~~~~-~~~~~~----~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~  222 (466)
T PRK06115        150 PLPGVTIDNQRIIDS-TGALSL----P-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQ  222 (466)
T ss_pred             CCCCCCCCCCeEECH-HHHhCC----c-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHH
Confidence            578876556554433 233222    1 25799999999999999999999999999999999999997 8999999999


Q ss_pred             HHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe-C--CCcEEecCeEEEecCCCCCchhh--hc-ccccccCcEEEecccc
Q 018416           89 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-R--DGNRLPTDMVVVGIGIRPNTSLF--EG-QLTLEKGGIKVTGRLQ  162 (356)
Q Consensus        89 ~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~-~--~g~~i~~D~vi~a~G~~p~~~l~--~~-~l~~~~g~I~vd~~l~  162 (356)
                      +.|+++||++++++++++++.++++....+.. .  +++++++|.|++++|++||++.+  +. ++..+++++.||+++|
T Consensus       223 ~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~  302 (466)
T PRK06115        223 KALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHR  302 (466)
T ss_pred             HHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCee
Confidence            99999999999999999998643332222222 1  23579999999999999999853  22 2445445688999999


Q ss_pred             cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEE
Q 018416          163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY  242 (356)
Q Consensus       163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~  242 (356)
                      ||.|+|||+|||+..+          +++..|.+||+.+++||++.....++..+|..++  .++.++++|+++.++...
T Consensus       303 Ts~~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~--t~p~ia~vGlte~~a~~~  370 (466)
T PRK06115        303 TSVPGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGKAGEVNYGLIPGVIY--TRPEVATVGKTEEQLKAE  370 (466)
T ss_pred             cCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEE--CCcccEEeeCCHHHHHHC
Confidence            9999999999999754          4678899999999999998654346667887554  367789999987643211


Q ss_pred             c-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCccc
Q 018416          243 G-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFAL  301 (356)
Q Consensus       243 g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap  301 (356)
                      |           +       .+..+|.++.+  ++++|||+|++|+.+.+ ++.++.||+.++|++||.++.    ..+|
T Consensus       371 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~----~~hP  446 (466)
T PRK06115        371 GRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTC----HPHP  446 (466)
T ss_pred             CCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCc----cCCC
Confidence            1           1       11134666554  58999999999988665 578899999999999998865    4456


Q ss_pred             CcCCC
Q 018416          302 AVSQK  306 (356)
Q Consensus       302 ~~~~~  306 (356)
                      .+++.
T Consensus       447 t~~e~  451 (466)
T PRK06115        447 TRSEA  451 (466)
T ss_pred             ChHHH
Confidence            66553

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=4.9e-36  Score=299.83  Aligned_cols=274  Identities=19%  Similarity=0.202  Sum_probs=211.9

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+....++  + .+.  +..   ...+++++|||+|++|+|+|..|+++|.+||++++. ++++. +|+++
T Consensus       161 ~p~~p~i~G~~~~~~~~--~-~~~--l~~---~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~  230 (479)
T PRK14727        161 TPTIPPIPGLMDTPYWT--S-TEA--LFS---DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLL  230 (479)
T ss_pred             CCCCCCCCCcCccceec--c-hHH--hcc---ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHH
Confidence            57888899975433332  2 222  111   124799999999999999999999999999999885 67776 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--hc-cccc-ccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~-~l~~-~~g~I~vd~  159 (356)
                      .+.+++.|++.||++++++++++++.+++ . ..+.+.++ ++++|.|++++|++||+.++  +. ++.. .+|+|.||+
T Consensus       231 ~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-~-~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~  307 (479)
T PRK14727        231 GETLTACFEKEGIEVLNNTQASLVEHDDN-G-FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNP  307 (479)
T ss_pred             HHHHHHHHHhCCCEEEcCcEEEEEEEeCC-E-EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECC
Confidence            99999999999999999999999976333 2 33555554 69999999999999999853  22 3555 568899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  239 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  239 (356)
                      +|||++|+|||+|||+..+.          ....|..||+.||.||++.....++..+|+.  .++++.++++|+++.++
T Consensus       308 ~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~--~~~~p~ia~vGlte~~a  375 (479)
T PRK14727        308 AMETSAPDIYAAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNATLDLSAMPAV--IFTDPQVATVGLSEAKA  375 (479)
T ss_pred             CeecCCCCEEEeeecCCcch----------hhhHHHHHHHHHHHHHcCCCcccccccCCcE--EEecCceeeeeCCHHHH
Confidence            99999999999999997653          3567889999999999987544455567754  47888999999987644


Q ss_pred             EEEc-----------c-----C--CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCC
Q 018416          240 VHYG-----------N-----F--SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG  298 (356)
Q Consensus       240 ~~~g-----------~-----~--~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~  298 (356)
                      ...|           +     .  ...+|.++.+  ++++|||+|++|+.+.+ ++.++.||+.++|++||.++.    .
T Consensus       376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~  451 (479)
T PRK14727        376 HLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQL----F  451 (479)
T ss_pred             HHcCCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCC----c
Confidence            2111           1     1  1134666554  58999999999988655 578899999999999999877    4


Q ss_pred             cccCcCCC
Q 018416          299 FALAVSQK  306 (356)
Q Consensus       299 yap~~~~~  306 (356)
                      .+|.+++.
T Consensus       452 ~hPt~~E~  459 (479)
T PRK14727        452 PYLTMVEG  459 (479)
T ss_pred             cCCChHHH
Confidence            56777664

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1e-35  Score=296.79  Aligned_cols=250  Identities=24%  Similarity=0.322  Sum_probs=201.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|++++..+.+.|+++||++++++++++++.+ ++.+ .
T Consensus       171 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~  247 (466)
T PRK07818        171 LPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKLGVKILTGTKVESIDDN-GSKV-T  247 (466)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCeE-E
Confidence            5789999999999999999999999999999999999997 79999999999999999999999999999863 3322 3


Q ss_pred             EEeC--CC--cEEecCeEEEecCCCCCchhh---hccccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccc
Q 018416          118 VNLR--DG--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE  189 (356)
Q Consensus       118 v~~~--~g--~~i~~D~vi~a~G~~p~~~l~---~~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~  189 (356)
                      +.+.  +|  +++++|.|++++|++||++++   ..++.. ++|+|.||++|||+.|+|||+|||+..+          +
T Consensus       248 v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~----------~  317 (466)
T PRK07818        248 VTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKL----------Q  317 (466)
T ss_pred             EEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCc----------c
Confidence            4443  56  479999999999999999853   333555 5688999999999999999999998643          4


Q ss_pred             cHHHHHHHHHHHHHHHcCCCCC-C-CCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCc
Q 018416          190 HVDSARKSAKHAVAAIMEPDKT-D-KFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTT  249 (356)
Q Consensus       190 ~~~~A~~~g~~aa~~i~g~~~~-~-~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~  249 (356)
                      ++..|..||+.||.||++.... . .+..+|.  ..++++.++++|+++.++...|           .       .+..+
T Consensus       318 l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g  395 (466)
T PRK07818        318 LAHVAEAQGVVAAETIAGAETLELGDYRMMPR--ATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPTG  395 (466)
T ss_pred             cHhHHHHHHHHHHHHHcCCCCCccCccCCCCe--EEECCCCeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCCCCe
Confidence            6788999999999999986431 1 4455664  4567889999999876542211           1       11134


Q ss_pred             eEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          250 FGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       250 ~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      |.|+..  ++|+|||+|++|+.+.+ ++.++.||++++|++||.+..    .++|.+++.
T Consensus       396 ~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  451 (466)
T PRK07818        396 FVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNV----HTHPTLSEA  451 (466)
T ss_pred             EEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCc----cCCCchHHH
Confidence            666554  58999999999988665 577899999999999998844    567887765

>PLN02546 glutathione reductase

Probab=100.00  E-value=1.1e-35  Score=300.18  Aligned_cols=274  Identities=18%  Similarity=0.265  Sum_probs=213.4

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+  +++   +.+++..+   ..  .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus       227 ~p~~P~IpG~~--~v~---~~~~~l~~---~~--~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~  295 (558)
T PLN02546        227 RPFIPDIPGIE--HAI---DSDAALDL---PS--KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEV  295 (558)
T ss_pred             CCCCCCCCChh--hcc---CHHHHHhc---cc--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHH
Confidence            56777888864  333   33333322   11  5789999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--hc-cccc-ccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~-~l~~-~~g~I~vd~  159 (356)
                      ...+++.|+++||++++++.+++++.++++.+ .+++.+++...+|.|++++|++||++++  +. ++.. ++|+|.||+
T Consensus       296 ~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~  374 (558)
T PLN02546        296 RDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDE  374 (558)
T ss_pred             HHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECC
Confidence            99999999999999999999999976444433 4555555556699999999999999853  33 3665 568899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecC-ceEEEeecccc
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFT-LSWQFYGDNVG  237 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~-~~~~~~G~~~~  237 (356)
                      ++||++|+|||+|||+..+          .++..|..||+.+|+||++... ...+..+|+.   +|. ..++++|+++.
T Consensus       375 ~l~Ts~p~IYAaGDv~~~~----------~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~---vft~Peia~VGlte~  441 (558)
T PLN02546        375 YSRTSVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFGNEPTKPDYRAVPSA---VFSQPPIGQVGLTEE  441 (558)
T ss_pred             CceeCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEE---EeCCchHhhccCCHH
Confidence            9999999999999999754          3567899999999999998643 2356678864   444 47899999886


Q ss_pred             eEEEEc--------c----------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcC
Q 018416          238 EVVHYG--------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG  296 (356)
Q Consensus       238 ~~~~~g--------~----------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~  296 (356)
                      ++...+        .          ....+|.++.+  ++++|||+|++|+++.+ ++.++.||++++|++||.+..   
T Consensus       442 eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~---  518 (558)
T PLN02546        442 QAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATV---  518 (558)
T ss_pred             HHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc---
Confidence            543221        0          01134666654  68999999999988665 578899999999999998755   


Q ss_pred             CCcccCcCCC
Q 018416          297 LGFALAVSQK  306 (356)
Q Consensus       297 ~~yap~~~~~  306 (356)
                       ..+|.+++.
T Consensus       519 -~~hPT~~E~  527 (558)
T PLN02546        519 -GIHPTAAEE  527 (558)
T ss_pred             -cCCCChHHH
Confidence             566776665

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=2.7e-35  Score=294.29  Aligned_cols=275  Identities=21%  Similarity=0.272  Sum_probs=210.3

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+ +..+   +.+++..+.     ..+++++|||+|++|+|+|..|+++|.+||++++ +.+++. +|+++
T Consensus       154 ~p~~p~ipG~~-~~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~~  222 (484)
T TIGR01438       154 RPRYPGIPGAK-ELCI---TSDDLFSLP-----YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQDC  222 (484)
T ss_pred             CCCCCCCCCcc-ceee---cHHHhhccc-----ccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccc-cCHHH
Confidence            57888899874 2223   333333221     1468999999999999999999999999999998 577876 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC---cEEecCeEEEecCCCCCchhhh---ccccc-c-cCcE
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLFE---GQLTL-E-KGGI  155 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~l~~---~~l~~-~-~g~I  155 (356)
                      ++.+++.|+++||++++++.+++++.. ++. ..+++.++   +++++|.|++++|++||++++.   .++.. . +|+|
T Consensus       223 ~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I  300 (484)
T TIGR01438       223 ANKVGEHMEEHGVKFKRQFVPIKVEQI-EAK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKI  300 (484)
T ss_pred             HHHHHHHHHHcCCEEEeCceEEEEEEc-CCe-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeE
Confidence            999999999999999999999999763 332 34555555   3799999999999999998642   23554 2 4889


Q ss_pred             EEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeec
Q 018416          156 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGD  234 (356)
Q Consensus       156 ~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~  234 (356)
                      .||+++||+.|+|||+|||+....         .++..|.+||+.+++||++... ...+..+|+.+  ++++.++++|+
T Consensus       301 ~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i--~~~p~ia~vGl  369 (484)
T TIGR01438       301 PADEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTV--FTPLEYGACGL  369 (484)
T ss_pred             ecCCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCCcccccccCCeEE--eCCCceeeecC
Confidence            999999999999999999996322         3567899999999999997542 13456678654  56778999999


Q ss_pred             ccceEEEE-c------------cC-------C--CCceEEEEe---eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCc
Q 018416          235 NVGEVVHY-G------------NF-------S--GTTFGAYWV---NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVED  288 (356)
Q Consensus       235 ~~~~~~~~-g------------~~-------~--~~~~~~~~~---~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~d  288 (356)
                      ++.++... +            ..       +  ..+|.++.+   ++++|||+|++|+++.+ ++.++.||++++|++|
T Consensus       370 te~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~d  449 (484)
T TIGR01438       370 SEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKD  449 (484)
T ss_pred             CHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHH
Confidence            87543211 0            00       0  124666543   47999999999987665 5788999999999999


Q ss_pred             HHHHhhcCCCcccCcCCC
Q 018416          289 LAELETQGLGFALAVSQK  306 (356)
Q Consensus       289 l~~l~~~~~~yap~~~~~  306 (356)
                      |.+..    .++|.+++.
T Consensus       450 l~~~~----~~hPt~sE~  463 (484)
T TIGR01438       450 LDNTI----GIHPVCAEV  463 (484)
T ss_pred             Hhhhh----cCCCChHHH
Confidence            98855    667877765

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=3.5e-35  Score=293.50  Aligned_cols=250  Identities=21%  Similarity=0.281  Sum_probs=202.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++.+.+.+.|+++||++++++++++++.++ +.+ .
T Consensus       182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~  258 (475)
T PRK06327        182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG-KGV-S  258 (475)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC-CEE-E
Confidence            4799999999999999999999999999999999999887 899999999999999999999999999998643 332 3


Q ss_pred             EEeCC--C--cEEecCeEEEecCCCCCchhh--hc-cccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccc
Q 018416          118 VNLRD--G--NRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE  189 (356)
Q Consensus       118 v~~~~--g--~~i~~D~vi~a~G~~p~~~l~--~~-~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~  189 (356)
                      +.+.+  |  +++++|.+++++|++|+++++  +. .+.. ++|+|.||+++||+.|+|||+|||+..+          .
T Consensus       259 v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~----------~  328 (475)
T PRK06327        259 VAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGP----------M  328 (475)
T ss_pred             EEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCc----------c
Confidence            54443  3  469999999999999999843  22 3555 5688999999999999999999998753          3


Q ss_pred             cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCceE
Q 018416          190 HVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTTFG  251 (356)
Q Consensus       190 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~~~  251 (356)
                      ++..|..||+.||.||++......+..+|+.+  ++++.++.+|+++.++...|           .       .+..+|.
T Consensus       329 ~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~--~~~pe~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  406 (475)
T PRK06327        329 LAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI--YTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFV  406 (475)
T ss_pred             hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--eCCcceEEEeCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEE
Confidence            57789999999999999865434566778755  57888999999876432111           0       1113466


Q ss_pred             EEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          252 AYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       252 ~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      ++.+  ++++|||+|++|+++.+ ++.++.||++++|++||.++.    .++|++++.
T Consensus       407 klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  460 (475)
T PRK06327        407 KIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARIC----HAHPTLSEV  460 (475)
T ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCC----cCCCChHHH
Confidence            6655  58999999999988665 578899999999999998865    677887764

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=5.3e-35  Score=298.06  Aligned_cols=274  Identities=21%  Similarity=0.245  Sum_probs=210.5

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+...++  .+. ++...     ...+++++|||+|++|+|+|..|+++|.+||++++. .+++. +|+++
T Consensus       243 ~p~~p~i~g~~~~~~~--~~~-~~~~~-----~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~  312 (561)
T PRK13748        243 SPAVPPIPGLKETPYW--TST-EALVS-----DTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAI  312 (561)
T ss_pred             CCCCCCCCCCCccceE--ccH-HHhhc-----ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHH
Confidence            5788889997643332  222 22111     124799999999999999999999999999999985 57776 79999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--h-ccccc-ccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~I~vd~  159 (356)
                      ++.+.+.|++.||++++++.+++++.+ ++. ..+.+.++ ++++|.|++++|++||+.++  + .++.. ++|+|.||+
T Consensus       313 ~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~  389 (561)
T PRK13748        313 GEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQ  389 (561)
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECC
Confidence            999999999999999999999999763 333 23555444 69999999999999999853  3 33655 568899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  239 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  239 (356)
                      +|||+.|+|||+|||+..+.          .+..|..||+.|+.||++.....++..+|+  ..++++.++++|+++.++
T Consensus       390 ~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a  457 (561)
T PRK13748        390 GMRTSVPHIYAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQVATVGYSEAEA  457 (561)
T ss_pred             CcccCCCCEEEeeecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCe--EEEccCCceeeeCCHHHH
Confidence            99999999999999997653          455788999999999998654344555674  447889999999987543


Q ss_pred             EEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCC
Q 018416          240 VHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG  298 (356)
Q Consensus       240 ~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~  298 (356)
                      ...|           +       ....+|.++.+  ++++|||+|++|+.+.+ ++.++.||+.++|++||.++.    .
T Consensus       458 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~  533 (561)
T PRK13748        458 HHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQL----F  533 (561)
T ss_pred             HHcCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccc----c
Confidence            2111           1       01234777655  48999999999988665 577899999999999998877    3


Q ss_pred             cccCcCCC
Q 018416          299 FALAVSQK  306 (356)
Q Consensus       299 yap~~~~~  306 (356)
                      .+|.+++.
T Consensus       534 ~~Pt~~e~  541 (561)
T PRK13748        534 PYLTMVEG  541 (561)
T ss_pred             cCCchHHH
Confidence            46666654

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1.7e-34  Score=285.82  Aligned_cols=275  Identities=19%  Similarity=0.204  Sum_probs=213.1

Q ss_pred             CCccCCCCCCC-CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            4 KLEEFGLSGSD-AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~~ipG~~-~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|+.+++||.+ .+++++..   ++.   +...  .+++++|||+|++|+|+|..|++.|.+||++++.+++++. .+++
T Consensus       129 ~~~~p~i~G~~~~~~v~~~~---~~~---~~~~--~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~  199 (438)
T PRK07251        129 VSNVLPIPGLADSKHVYDST---GIQ---SLET--LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPS  199 (438)
T ss_pred             CCCCCCCCCcCCCCcEEchH---HHh---cchh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHH
Confidence            57888999973 45666432   222   2222  4789999999999999999999999999999999999987 7999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh---ccccc-ccCcEEEe
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVT  158 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~l~~-~~g~I~vd  158 (356)
                      +.+.+.+.|+++||++++++++++++. +++.+ .+. .+++++++|.+++++|++|+++.+.   ..+.. ++|+|.||
T Consensus       200 ~~~~~~~~l~~~GI~i~~~~~V~~i~~-~~~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd  276 (438)
T PRK07251        200 VAALAKQYMEEDGITFLLNAHTTEVKN-DGDQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVD  276 (438)
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEe-cCCEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEEC
Confidence            999999999999999999999999986 33332 233 4577899999999999999987542   23444 56889999


Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeeccc
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNV  236 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~  236 (356)
                      +++||+.|+|||+|||+..+.          ....|..+|+.++.++++...  ...+..+|+.  .++++.++++|+++
T Consensus       277 ~~~~t~~~~IyaiGD~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~ia~vGlte  344 (438)
T PRK07251        277 DYCQTSVPGVFAVGDVNGGPQ----------FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPPLSQVGLTE  344 (438)
T ss_pred             CCcccCCCCEEEeeecCCCcc----------cHhHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCceEeeeCCH
Confidence            999999999999999987542          355688899999999987642  1244567765  55889999999987


Q ss_pred             ceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhc
Q 018416          237 GEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQ  295 (356)
Q Consensus       237 ~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~  295 (356)
                      .++...|           .       .+..+|.++.+  ++++|||+|++|+++.+ ++.++.||++++|++||.+.   
T Consensus       345 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~---  421 (438)
T PRK07251        345 KEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQ---  421 (438)
T ss_pred             HHHHhcCCCeEEEEEECCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc---
Confidence            6443221           0       01123666554  58999999999988655 67889999999999998774   


Q ss_pred             CCCcccCcCCC
Q 018416          296 GLGFALAVSQK  306 (356)
Q Consensus       296 ~~~yap~~~~~  306 (356)
                       +.++|.+++.
T Consensus       422 -~~~hPt~~e~  431 (438)
T PRK07251        422 -IFTHPTMAEN  431 (438)
T ss_pred             -cccCCChHHH
Confidence             4677887754

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=1e-34  Score=289.25  Aligned_cols=276  Identities=22%  Similarity=0.276  Sum_probs=214.1

Q ss_pred             CCccCCCC-CCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            4 KLEEFGLS-GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~~ip-G~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|+.+++| +.+.+.+   .+.+++..+.     ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. ++++
T Consensus       142 ~p~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~  212 (461)
T TIGR01350       142 RPRSLPGPFDFDGEVV---ITSTGALNLK-----EVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAE  212 (461)
T ss_pred             CCCCCCCCCCCCCceE---EcchHHhccc-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHH
Confidence            56666766 3332223   3444554332     14789999999999999999999999999999999999986 8999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCch--hhhc-cccc-ccCcEE
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS--LFEG-QLTL-EKGGIK  156 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~--l~~~-~l~~-~~g~I~  156 (356)
                      +.+.+.+.|+++||++++++++++++.+ ++.+ .+++.+|  +++++|.+++++|.+|++.  +++. .+.. .+|.|.
T Consensus       213 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~  290 (461)
T TIGR01350       213 VSKVVAKALKKKGVKILTNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIV  290 (461)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEe
Confidence            9999999999999999999999999863 3333 3555666  5799999999999999998  3443 3555 568899


Q ss_pred             EecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecc
Q 018416          157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDN  235 (356)
Q Consensus       157 vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~  235 (356)
                      ||+++||+.|+|||+|||+..+          +++..|..||+.+|++|.+... ..++...|  ...+++..++.+|++
T Consensus       291 vd~~l~t~~~~IyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~--~~~~~~~~~a~vG~~  358 (461)
T TIGR01350       291 VDEYMRTNVPGIYAIGDVIGGP----------MLAHVASHEGIVAAENIAGKEPAPIDYDAVP--SCIYTDPEVASVGLT  358 (461)
T ss_pred             eCCCcccCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCC--eEEecCCceEEEeCC
Confidence            9999999999999999999753          4578899999999999998653 23334455  455678889999987


Q ss_pred             cceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhh
Q 018416          236 VGEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELET  294 (356)
Q Consensus       236 ~~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~  294 (356)
                      +.++...|           +       ....+|.++..  ++++|||+|++|+++.+ ++.++.||++++|++||.++  
T Consensus       359 ~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~--  436 (461)
T TIGR01350       359 EEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKT--  436 (461)
T ss_pred             HHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC--
Confidence            75332111           1       11123666554  57999999999988655 57889999999999999884  


Q ss_pred             cCCCcccCcCCC
Q 018416          295 QGLGFALAVSQK  306 (356)
Q Consensus       295 ~~~~yap~~~~~  306 (356)
                        +.|+|+|++.
T Consensus       437 --~~~~P~~~e~  446 (461)
T TIGR01350       437 --IHPHPTLSEA  446 (461)
T ss_pred             --cccCCCHHHH
Confidence              5899999876

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.2e-34  Score=288.55  Aligned_cols=250  Identities=24%  Similarity=0.301  Sum_probs=199.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++.+.+++.|+++ |++++++++++++.+++..+ .
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v-~  244 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKV-E  244 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceE-E
Confidence            5799999999999999999999999999999999999986 8999999999999999 99999999999976332122 2


Q ss_pred             EEeCCC--cEEecCeEEEecCCCCCchhh--h-ccccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccH
Q 018416          118 VNLRDG--NRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV  191 (356)
Q Consensus       118 v~~~~g--~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~  191 (356)
                      +++.++  +++++|.+++++|++||++++  + .++.. ++|.|.||+++||+.|+|||+|||+..+          +++
T Consensus       245 ~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~----------~~~  314 (460)
T PRK06292        245 ELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKP----------PLL  314 (460)
T ss_pred             EEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCc----------cch
Confidence            333333  579999999999999999842  3 33555 5688999999999999999999999754          356


Q ss_pred             HHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCceEE
Q 018416          192 DSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTTFGA  252 (356)
Q Consensus       192 ~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~~~~  252 (356)
                      ..|..||+.||.||++. .....+..+|+.+  ++++.++++|+++.++...|           .       ....+|.+
T Consensus       315 ~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~--~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k  392 (460)
T PRK06292        315 HEAADEGRIAAENAAGDVAGGVRYHPIPSVV--FTDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVK  392 (460)
T ss_pred             hHHHHHHHHHHHHhcCCCCCCcCCCCCCeEE--ECCCccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCeEEE
Confidence            78999999999999984 3234455677533  56788999999876442211           0       11234666


Q ss_pred             EEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          253 YWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       253 ~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      +.+  ++++|||+|++|+++.+ ++.++.||++++|++||.+..    .++|++++.
T Consensus       393 lv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  445 (460)
T PRK06292        393 VYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMP----FYHPTLSEG  445 (460)
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----cCCCCHHHH
Confidence            554  57999999999988655 678899999999999998876    467887765

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.7e-34  Score=288.44  Aligned_cols=252  Identities=22%  Similarity=0.270  Sum_probs=199.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|||||++|+|+|..|+++|.+||++++.+++++. +|+++.+.+.+.|+++||++++++++++++..+++.+..
T Consensus       179 ~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~  257 (472)
T PRK05976        179 LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLI  257 (472)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEE
Confidence            4789999999999999999999999999999999999997 899999999999999999999999999997421333434


Q ss_pred             EEeCCC--cEEecCeEEEecCCCCCchhhh--c-ccccccCcEEEecccccCCCCEEEEccccccCccccCcccccccHH
Q 018416          118 VNLRDG--NRLPTDMVVVGIGIRPNTSLFE--G-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD  192 (356)
Q Consensus       118 v~~~~g--~~i~~D~vi~a~G~~p~~~l~~--~-~l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~  192 (356)
                      +.+.+|  +++++|.+++++|++|+++.+.  . .+..++|+|.||++++|+.|+|||+|||+..+          +++.
T Consensus       258 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~----------~~~~  327 (472)
T PRK05976        258 VAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEP----------QLAH  327 (472)
T ss_pred             EEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccCCCCEEEeeecCCCc----------ccHH
Confidence            445566  3699999999999999997532  2 23345688999999999999999999998643          4577


Q ss_pred             HHHHHHHHHHHHHcCCC-CCCCCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCceEEE
Q 018416          193 SARKSAKHAVAAIMEPD-KTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTTFGAY  253 (356)
Q Consensus       193 ~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~~~~~  253 (356)
                      .|..||+.|+.+|+|.. ...++..+|.  ..++++.++.+|+++.++...|           .       ....+|.++
T Consensus       328 ~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl  405 (472)
T PRK05976        328 VAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKV  405 (472)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCceEEEeCCHHHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEE
Confidence            89999999999999864 2233444554  4578899999999875432111           0       111336665


Q ss_pred             Ee--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          254 WV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       254 ~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      ..  ++++|||+|++|+.+.+ ++.++.||+.++|++||.++.    .++|.+++.
T Consensus       406 i~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  457 (472)
T PRK05976        406 VADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTI----HPHPTLSEA  457 (472)
T ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----ccCCChHHH
Confidence            54  57999999999988665 578999999999999998876    557777664

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=2.5e-33  Score=272.37  Aligned_cols=252  Identities=21%  Similarity=0.291  Sum_probs=207.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+.  +++++++.++.++++.+.  .+++++|||+|++|+|+|..|.++|.+||++++.++++++.+++++
T Consensus       110 ~~~~p~i~G~~~--v~~~~~~~~~~~~~~~~~--~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~  185 (377)
T PRK04965        110 SAFVPPIPGREL--MLTLNSQQEYRAAETQLR--DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEV  185 (377)
T ss_pred             CCCCCCCCCCce--EEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHH
Confidence            577788999764  999999999999888775  5789999999999999999999999999999999999988789999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEEecccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  162 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~vd~~l~  162 (356)
                      ...+.+.|++.||++++++++++++.+ ++. ..+.+.+|+++++|.||+|+|.+|++.+++.. +..++ +|.||++||
T Consensus       186 ~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~  262 (377)
T PRK04965        186 SSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQ  262 (377)
T ss_pred             HHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcc
Confidence            999999999999999999999999863 222 35778899999999999999999999987654 55544 599999999


Q ss_pred             cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCC-CCeEEEEecCceEEEeecccceE--
Q 018416          163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDY-LPFFYSRVFTLSWQFYGDNVGEV--  239 (356)
Q Consensus       163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~~--  239 (356)
                      |++|+|||+|||++.+..      ..+.++.|.+||+.+|.||+|...  .|.. .+....+++++++.++|...++.  
T Consensus       263 ts~~~VyA~GD~a~~~~~------~~~~~~~a~~~g~~~a~n~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  334 (377)
T PRK04965        263 TSAPDIYALGDCAEINGQ------VLPFLQPIQLSAMALAKNLLGQNT--PLKLPAMLVKVKTPELPLQLAGETQRQDLR  334 (377)
T ss_pred             cCCCCEEEeeecEeECCc------eeehHHHHHHHHHHHHHHhcCCCc--ccccCCccEEEecCceeeEECCCCCCCCce
Confidence            999999999999987532      235678899999999999999763  3433 33355678999999999765321  


Q ss_pred             EEEccCCCCceEEEEeeCCeEEEEEEeCCCH
Q 018416          240 VHYGNFSGTTFGAYWVNKGRLVGSFLEGGTK  270 (356)
Q Consensus       240 ~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~  270 (356)
                      ...-+.++..|.+++.++|+|+|+.++|+..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~  365 (377)
T PRK04965        335 WQINAESQGMVAKGVDEAGQLRAFVVSEDRM  365 (377)
T ss_pred             EEEEeCCCCeEEEEEccCCcEEEEEEEChhH
Confidence            1112223334888888999999999999753

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=7.7e-34  Score=284.96  Aligned_cols=274  Identities=18%  Similarity=0.260  Sum_probs=208.9

Q ss_pred             CCccC-CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            4 KLEEF-GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~-~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|+.+ ++||.+. ..+   +.+++..+.     ..+++++|||+|++|+|+|..|+++|.+||++++ +.+++. +|++
T Consensus       155 ~p~~p~~i~G~~~-~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~  223 (499)
T PTZ00052        155 RPSIPEDVPGAKE-YSI---TSDDIFSLS-----KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVR-SIPLRG-FDRQ  223 (499)
T ss_pred             CCCCCCCCCCccc-eee---cHHHHhhhh-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEc-Cccccc-CCHH
Confidence            45555 4888642 222   334443321     1468999999999999999999999999999987 467775 8999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh--c-cccc-ccCcEEEe
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE--G-QLTL-EKGGIKVT  158 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~--~-~l~~-~~g~I~vd  158 (356)
                      +++.+++.|+++||++++++.+++++..+ +. ..+.+.+|+++++|.|++++|++||++++.  . ++.. .+|.+.++
T Consensus       224 ~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~  301 (499)
T PTZ00052        224 CSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAP  301 (499)
T ss_pred             HHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeC
Confidence            99999999999999999999999997633 32 356778888999999999999999999753  2 3555 56777777


Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEEeecccc
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVG  237 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~  237 (356)
                      +. +|+.|+|||+|||+....         .++..|.+||+.+|.||++.... ..+..+|+.+  +.++.++++|+++.
T Consensus       302 ~~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~i--ft~p~ia~vGlte~  369 (499)
T PTZ00052        302 ND-CTNIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTI--FTPIEYGACGYSSE  369 (499)
T ss_pred             CC-cCCCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEE--ecCCcceeecCCHH
Confidence            77 999999999999996321         35778999999999999985432 3455677655  45778999998875


Q ss_pred             eEEEE-c------------c-------C---------------CCCceEEEEe--e-CCeEEEEEEeCCCHHHH-HHHHH
Q 018416          238 EVVHY-G------------N-------F---------------SGTTFGAYWV--N-KGRLVGSFLEGGTKEEY-EAIAK  278 (356)
Q Consensus       238 ~~~~~-g------------~-------~---------------~~~~~~~~~~--~-~g~ilGa~~vg~~~~~~-~~~a~  278 (356)
                      ++... +            .       .               +..+|.++..  + +++|||+|++|+++.++ +.++.
T Consensus       370 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~  449 (499)
T PTZ00052        370 AAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSL  449 (499)
T ss_pred             HHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHH
Confidence            43211 0            0       0               0234766654  2 69999999999987765 67899


Q ss_pred             HHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          279 ATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       279 ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      ||++++|++||.++.    ..+|.+++.
T Consensus       450 ai~~~~t~~~l~~~~----~~hPt~sE~  473 (499)
T PTZ00052        450 ALKLGAKKSDFDSMI----GIHPTDAEV  473 (499)
T ss_pred             HHHCCCCHHHHhccc----ccCCCCchh
Confidence            999999999998876    456777764

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1e-32  Score=255.23  Aligned_cols=274  Identities=22%  Similarity=0.305  Sum_probs=214.9

Q ss_pred             ccCCCCCCCC--CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            6 EEFGLSGSDA--ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         6 ~~~~ipG~~~--~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +..++||.+.  +.+.   |-+.|..+.+     -|++++|||+|+||+|++.-..++|.+||++|-.+++.+. +|.|+
T Consensus       184 eV~~~PGI~IDekkIV---SStgALsL~~-----vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Ei  254 (506)
T KOG1335|consen  184 EVTPFPGITIDEKKIV---SSTGALSLKE-----VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEI  254 (506)
T ss_pred             ccCCCCCeEecCceEE---ecCCccchhh-----CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHH
Confidence            4567788643  3333   2223444422     4899999999999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC---C--cEEecCeEEEecCCCCCchhh---hccccc-ccCc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGG  154 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G~~p~~~l~---~~~l~~-~~g~  154 (356)
                      +...++.|+++|++|+++++++..+.+.||.+ .+++.+   +  ++++||.+++++|++|-+.-+   +-++.. .+++
T Consensus       255 sk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~r  333 (506)
T KOG1335|consen  255 SKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGR  333 (506)
T ss_pred             HHHHHHHHHhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccc
Confidence            99999999999999999999999998778744 444432   2  469999999999999998733   334544 6789


Q ss_pred             EEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeec
Q 018416          155 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD  234 (356)
Q Consensus       155 I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~  234 (356)
                      |.||.+++|.+|+||+||||...|+          ++..|..||..+.+.|.+......|..+|...+....  ++.+|.
T Consensus       334 v~v~~~f~t~vP~i~~IGDv~~gpM----------LAhkAeeegI~~VE~i~g~~~hv~ynciP~v~ythPE--vawVG~  401 (506)
T KOG1335|consen  334 VIVNTRFQTKVPHIYAIGDVTLGPM----------LAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPE--VAWVGK  401 (506)
T ss_pred             eeccccccccCCceEEecccCCcch----------hhhhhhhhchhheeeecccCcccccCCCCceeecccc--eeeecc
Confidence            9999999999999999999998875          4667889999999999988755788889977665544  577788


Q ss_pred             ccceEEE------Ec------------cCCCCceEEEE--eeCCeEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHh
Q 018416          235 NVGEVVH------YG------------NFSGTTFGAYW--VNKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELE  293 (356)
Q Consensus       235 ~~~~~~~------~g------------~~~~~~~~~~~--~~~g~ilGa~~vg~~~~~~-~~~a~ai~~~~~~~dl~~l~  293 (356)
                      ++.++..      .|            +.+..+|.++.  .+++||||+|++|+.+.++ ...+.||..|.+.+|+++..
T Consensus       402 TEeqlkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvc  481 (506)
T KOG1335|consen  402 TEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVC  481 (506)
T ss_pred             chhhHHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhcc
Confidence            8754321      11            12223476654  4799999999999998776 45689999999999999887


Q ss_pred             hcCCCccc
Q 018416          294 TQGLGFAL  301 (356)
Q Consensus       294 ~~~~~yap  301 (356)
                      .++...+.
T Consensus       482 haHPTlSE  489 (506)
T KOG1335|consen  482 HAHPTLSE  489 (506)
T ss_pred             CCCCcHHH
Confidence            44433333

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.98  E-value=4.2e-32  Score=248.42  Aligned_cols=254  Identities=17%  Similarity=0.228  Sum_probs=202.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .|||++|||+|+|++|+|..++.+|.+++++.|.+.+|.. ||+.++..+.+.|+.+||++|++++++++....+|....
T Consensus       188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~  266 (478)
T KOG0405|consen  188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELV  266 (478)
T ss_pred             cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEE
Confidence            5899999999999999999999999999999999999998 899999999999999999999999999998877775443


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhh---hccccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHH
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS  193 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~---~~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~  193 (356)
                      + ...|..-.+|.++|++|+.||+.-+   +-++++ .+|.|.||+|.+||+|+||++||++....          +...
T Consensus       267 i-~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~~----------LTPV  335 (478)
T KOG0405|consen  267 I-TSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKIN----------LTPV  335 (478)
T ss_pred             E-EeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEeccccCcEe----------cchH
Confidence            3 3455555699999999999999733   344666 78999999999999999999999987543          4457


Q ss_pred             HHHHHHHHHHHHcCCC--CCCCCCCCCeEEEEecCceEEEeecccceEEEEccCC-----------------C---CceE
Q 018416          194 ARKSAKHAVAAIMEPD--KTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFS-----------------G---TTFG  251 (356)
Q Consensus       194 A~~~g~~aa~~i~g~~--~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g~~~-----------------~---~~~~  251 (356)
                      |+..|+..++.+++..  ...+|..+|+.++...  ++..+|+++.|++.....+                 +   ....
T Consensus       336 Aiaagr~la~rlF~~~~~~kldY~nVp~vVFshP--~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~m  413 (478)
T KOG0405|consen  336 AIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHP--PIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLM  413 (478)
T ss_pred             HHhhhhhHHHHhhcCCCCCccccccCceEEEecC--CcccccCCHHHHHHHhCccceEEEecCCchhHhHhhcCCcceEE
Confidence            8889999999999843  2357888997655433  4678899987764321100                 0   1123


Q ss_pred             EEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCCCCC
Q 018416          252 AYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLP  309 (356)
Q Consensus       252 ~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~~~~  309 (356)
                      ++.+  ++.+++|++++|....| ++-++.|+++|.|-.|+....    +.+|.-++.-+.
T Consensus       414 Klvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tV----aIHPTSAEElVT  470 (478)
T KOG0405|consen  414 KLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTV----AIHPTSAEELVT  470 (478)
T ss_pred             EEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccce----eecCCCHHHhee
Confidence            3333  78999999999987655 578999999999998876544    667766555333

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.96  E-value=6.3e-29  Score=238.63  Aligned_cols=195  Identities=28%  Similarity=0.410  Sum_probs=166.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhc-------CCC----CcEEEECCchHHHHHHHHHHHC-----------
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-------CSG----GNAVVIGGGYIGMECAASLVIN-----------   61 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~-------~~~----~~vvVvGgG~iGlE~A~~L~~~-----------   61 (356)
                      +++.+++||.. ++.+.+++++||.+++..+..       .+.    .+++|+|||+.|+|+|.+|+.+           
T Consensus       110 ~~~~fgi~G~~-E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~  188 (405)
T COG1252         110 ETNYFGIPGAA-EYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVD  188 (405)
T ss_pred             cCCcCCCCCHH-HhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCC
Confidence            57899999984 799999999999999988751       112    2699999999999999999864           


Q ss_pred             --CCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc-EEecCeEEEecCCC
Q 018416           62 --KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIR  138 (356)
Q Consensus        62 --G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~~  138 (356)
                        ..+|++|+++|++||. +++++++..++.|+++||++++++.|+++++  +    .+++++|+ +|++|++||++|.+
T Consensus       189 ~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~----~v~~~~g~~~I~~~tvvWaaGv~  261 (405)
T COG1252         189 PSELRVILVEAGPRILPM-FPPKLSKYAERALEKLGVEVLLGTPVTEVTP--D----GVTLKDGEEEIPADTVVWAAGVR  261 (405)
T ss_pred             ccccEEEEEccCchhccC-CCHHHHHHHHHHHHHCCCEEEcCCceEEECC--C----cEEEccCCeeEecCEEEEcCCCc
Confidence              1389999999999998 9999999999999999999999999999975  2    47778887 59999999999999


Q ss_pred             CCchhhh-ccccc-ccCcEEEeccccc-CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC
Q 018416          139 PNTSLFE-GQLTL-EKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  210 (356)
Q Consensus       139 p~~~l~~-~~l~~-~~g~I~vd~~l~t-s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~  210 (356)
                      ++...-+ ..++. ..|++.||++||+ ++|+|||+|||+...+.    ...++.++.|++||+.+|+||.....
T Consensus       262 a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~  332 (405)
T COG1252         262 ASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLK  332 (405)
T ss_pred             CChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhc
Confidence            9887655 34555 4699999999998 89999999999998764    23457889999999999999986553

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.8e-28  Score=223.84  Aligned_cols=280  Identities=20%  Similarity=0.246  Sum_probs=209.0

Q ss_pred             CCCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            3 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         3 ~~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      .+|++++|||.- +...|-.   |   +-+.- . .|.+-+|||+|++++|||.+|+-.|.+||+..|+ -++.. ||.+
T Consensus       171 ~RPrYp~IpG~~-Ey~ITSD---D---lFsl~-~-~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~LrG-FDqd  239 (503)
T KOG4716|consen  171 LRPRYPDIPGAK-EYGITSD---D---LFSLP-Y-EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLRG-FDQD  239 (503)
T ss_pred             CCCCCCCCCCce-eeeeccc---c---ccccc-C-CCCceEEEccceeeeehhhhHhhcCCCcEEEEEE-eeccc-ccHH
Confidence            589999999963 3223211   2   21211 1 4678899999999999999999999999999986 34444 9999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe---CCCc--EEecCeEEEecCCCCCchhh---hccccc--cc
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIRPNTSLF---EGQLTL--EK  152 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~vi~a~G~~p~~~l~---~~~l~~--~~  152 (356)
                      |++.+.+.|+++||+|...+.+++++.-++|+.. |..   ..++  +-++|.|+||+|+.+.++-+   ..+++.  ..
T Consensus       240 mae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~-v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks  318 (503)
T KOG4716|consen  240 MAELVAEHMEERGIKFLRKTVPERVEQIDDGKLR-VFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKS  318 (503)
T ss_pred             HHHHHHHHHHHhCCceeecccceeeeeccCCcEE-EEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccC
Confidence            9999999999999999999888888876777643 222   2222  35799999999999998733   334555  56


Q ss_pred             CcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEE
Q 018416          153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQF  231 (356)
Q Consensus       153 g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~  231 (356)
                      +.|.||+.-+||+|+|||+||+.+...         ++...|++.||..|+.+.+... ..+|..+|+..  +..+....
T Consensus       319 ~KI~v~~~e~t~vp~vyAvGDIl~~kp---------ELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTV--FTPLEy~c  387 (503)
T KOG4716|consen  319 GKIPVDDEEATNVPYVYAVGDILEDKP---------ELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTV--FTPLEYGC  387 (503)
T ss_pred             CccccChHHhcCCCceEEecceecCCc---------ccchhhhhhchHHHHHHhcCcceeeeccCCceee--ecchhccc
Confidence            889999999999999999999998643         4556799999999999998654 25777788633  34567788


Q ss_pred             eecccceEEEE-c-------------------cCCCCc-eEEEEe---eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCc
Q 018416          232 YGDNVGEVVHY-G-------------------NFSGTT-FGAYWV---NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVV  286 (356)
Q Consensus       232 ~G~~~~~~~~~-g-------------------~~~~~~-~~~~~~---~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~  286 (356)
                      +|+++.+++.. |                   ..+... |.+...   .+.||+|.|++||.+.| ++-++.|++.|+|.
T Consensus       388 ~GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~  467 (503)
T KOG4716|consen  388 VGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTK  467 (503)
T ss_pred             cCCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccH
Confidence            99988654321 1                   011111 544432   57899999999999776 47799999999999


Q ss_pred             CcHHHHhhcCCCcccCcCC
Q 018416          287 EDLAELETQGLGFALAVSQ  305 (356)
Q Consensus       287 ~dl~~l~~~~~~yap~~~~  305 (356)
                      .||.++...+...+..|.+
T Consensus       468 ~~l~ntigIHPt~aE~Ft~  486 (503)
T KOG4716|consen  468 KDLDNTIGIHPTTAEEFTT  486 (503)
T ss_pred             HHHhhcccccccchhheeE
Confidence            9999888555555544443

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.95  E-value=2.6e-27  Score=233.57  Aligned_cols=192  Identities=23%  Similarity=0.363  Sum_probs=161.5

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcC---------------CCCcEEEECCchHHHHHHHHHHH--------
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVI--------   60 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~---------------~~~~vvVvGgG~iGlE~A~~L~~--------   60 (356)
                      +|+.+++||.+ ++++++++++++.++++.+.+.               ..++++|||||++|+|+|..|+.        
T Consensus       124 ~~~~~~ipG~~-e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~  202 (424)
T PTZ00318        124 RPNTFNIPGVE-ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRN  202 (424)
T ss_pred             ccCCCCCCCHH-HcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHh
Confidence            46778999986 5789999999999988776421               12489999999999999999986        


Q ss_pred             ------CCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEe
Q 018416           61 ------NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  134 (356)
Q Consensus        61 ------~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a  134 (356)
                            .+.+||++++++++++. +++++.+.+++.|+++||+++++++++++..  +    .+.+++|+++++|++|++
T Consensus       203 ~~~~~~~~~~Vtlv~~~~~ll~~-~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~  275 (424)
T PTZ00318        203 LNPELVEECKVTVLEAGSEVLGS-FDQALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWS  275 (424)
T ss_pred             hhhcccccCEEEEEcCCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEc
Confidence                  37899999999999986 8999999999999999999999999999964  2    366889999999999999


Q ss_pred             cCCCCCchhhhc-cccc-ccCcEEEecccc-cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          135 IGIRPNTSLFEG-QLTL-EKGGIKVTGRLQ-SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       135 ~G~~p~~~l~~~-~l~~-~~g~I~vd~~l~-ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      +|.+|+. +++. .+.. ++|+|.||++|| |++|+|||+|||+..+..     ...+.+..|++||+.+|.||.+..
T Consensus       276 ~G~~~~~-~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~-----~~~~~~~~A~~qg~~~A~ni~~~l  347 (424)
T PTZ00318        276 TGVGPGP-LTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEER-----PLPTLAQVASQQGVYLAKEFNNEL  347 (424)
T ss_pred             cCCCCcc-hhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCC-----CCCCchHHHHHHHHHHHHHHHHHh
Confidence            9999985 4443 3555 578999999999 599999999999986431     123578899999999999998654

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.94  E-value=8.9e-25  Score=213.32  Aligned_cols=281  Identities=28%  Similarity=0.288  Sum_probs=225.3

Q ss_pred             CCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC-HHHHHHHHHH
Q 018416           12 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT-PKIASYYEEY   90 (356)
Q Consensus        12 G~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d-~~~~~~~~~~   90 (356)
                      +...++++++++.+++.+++....  ..++++|+|+|++|+|+|..++++|++||+++..+++++. +. +++.+.+.+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~-~~~~~~~~~~~~~  187 (415)
T COG0446         111 ISDWEGVVTLRLREDAEALKGGAE--PPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ-LLDPEVAEELAEL  187 (415)
T ss_pred             ccccCceEEECCHHHHHHHHHHHh--ccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh-hhhHHHHHHHHHH
Confidence            566778999999999999998876  3689999999999999999999999999999999999997 45 9999999999


Q ss_pred             HHhCCCEEEeCCeeeEEEEcCCCcEEE-EEeCCCcEEecCeEEEecCCCCCchhhhccc--cc-ccCcEEEecccccC-C
Q 018416           91 YKSKGVKFVKGTVLSSFDVDSNGKVVA-VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQL--TL-EKGGIKVTGRLQSS-N  165 (356)
Q Consensus        91 l~~~GV~v~~~~~v~~i~~~~~g~v~~-v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l--~~-~~g~I~vd~~l~ts-~  165 (356)
                      |+++||+++++..+.+++...+..... +...++..+++|++++++|.+||+.+.+...  .. .+|.|.||++++|+ .
T Consensus       188 l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~  267 (415)
T COG0446         188 LEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKD  267 (415)
T ss_pred             HHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCC
Confidence            999999999999999998633221111 5677889999999999999999988888764  33 66789999999997 9


Q ss_pred             CCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc-eE-----
Q 018416          166 SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EV-----  239 (356)
Q Consensus       166 ~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-~~-----  239 (356)
                      ++|||+|||+..+...++.....++++.|..+++.++.++.+. . .....+++.+.+.++.....+|.+.. +.     
T Consensus       268 ~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  345 (415)
T COG0446         268 PDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-L-RIPGLLGTVISDVGDLCAASTGLTEGKERGIDVV  345 (415)
T ss_pred             CCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc-c-ccccccCceEEEEcCeEEEEecCCcccccceeee
Confidence            9999999999988766555566889999999999999999876 2 45567899999999999999998875 21     


Q ss_pred             --EEEccCC------CCc--eEE--EEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhcCCCccc
Q 018416          240 --VHYGNFS------GTT--FGA--YWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL  301 (356)
Q Consensus       240 --~~~g~~~------~~~--~~~--~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~yap  301 (356)
                        ...+...      ...  ..+  +..++++++|+|. -.....+..+..++..+.++.++..++   +.|+|
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  415 (415)
T COG0446         346 LVVSGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQE-LEVLKRIGALALAIGLGDTVAELDALD---AIYAP  415 (415)
T ss_pred             EEEeccCcccccccCCCCeEEEEEEEcCcccceehhhh-HHHHhhhhhhhhhhhhcCchhhhhhcc---cccCC
Confidence              1111110      011  111  2246788888887 222335677888889899888887766   66654

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.93  E-value=1.6e-24  Score=209.43  Aligned_cols=192  Identities=25%  Similarity=0.297  Sum_probs=157.5

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhc-----CCCCcEEEECCchHHHHHHHHHHH----CC--CcEEEEeeCC
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-----CSGGNAVVIGGGYIGMECAASLVI----NK--INVTMVFPEA   72 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~-----~~~~~vvVvGgG~iGlE~A~~L~~----~G--~~Vtlv~~~~   72 (356)
                      +|+.+++||. .++++++++++++.++.+.+..     ..+++++|||+|++|+|+|..|++    +|  .+||++ ..+
T Consensus       106 ~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~  183 (364)
T TIGR03169       106 TTPLSGVEGA-ADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA  183 (364)
T ss_pred             CCCCCCCCcc-cccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC
Confidence            5778899994 5889999999998884433321     135799999999999999999985    34  589999 677


Q ss_pred             ccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhccccc-c
Q 018416           73 HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-E  151 (356)
Q Consensus        73 ~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~-~  151 (356)
                      .+++. +++++...+++.|+++||++++++.+++++.   +   .+.+.+|+++++|.+++++|.+|++.+...++.. .
T Consensus       184 ~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~---~---~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~  256 (364)
T TIGR03169       184 SLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPD---G---ALILADGRTLPADAILWATGARAPPWLAESGLPLDE  256 (364)
T ss_pred             ccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC---C---eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCC
Confidence            78876 8999999999999999999999999999853   2   4667889999999999999999997766555655 5


Q ss_pred             cCcEEEeccccc-CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          152 KGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       152 ~g~I~vd~~l~t-s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      +|+|.||+++|| ++|+|||+|||+..+...     ....+..|++||+.+|.||....
T Consensus       257 ~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~-----~~~~~~~A~~~g~~~a~ni~~~l  310 (364)
T TIGR03169       257 DGFLRVDPTLQSLSHPHVFAAGDCAVITDAP-----RPKAGVYAVRQAPILAANLRASL  310 (364)
T ss_pred             CCeEEECCccccCCCCCEEEeeeeeecCCCC-----CCCchHHHHHhHHHHHHHHHHHh
Confidence            789999999998 999999999999865321     12456789999999999997543

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.93  E-value=1.3e-24  Score=215.81  Aligned_cols=188  Identities=25%  Similarity=0.275  Sum_probs=147.0

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHh-------cCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMK-------SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~-------~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      +|+.+++||.+.++|++..++.+...+....+       ...+++|+|||+|++|+|+|..|.++|.+||+++++++...
T Consensus       230 ~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~  309 (449)
T TIGR01316       230 LPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDM  309 (449)
T ss_pred             CCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccC
Confidence            58889999999999997766554433322110       12578999999999999999999999999999999865221


Q ss_pred             ccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---------CC-----------cEEecCeEEEecC
Q 018416           77 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMVVVGIG  136 (356)
Q Consensus        77 ~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~vi~a~G  136 (356)
                      . ..    ....+.+++.||++++++.++++..+++|++..+++.         +|           +++++|.||+++|
T Consensus       310 ~-~~----~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG  384 (449)
T TIGR01316       310 T-AR----VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIG  384 (449)
T ss_pred             C-CC----HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCC
Confidence            1 12    2223567889999999999999986556766555543         23           2699999999999


Q ss_pred             CCCCchhhhcc-ccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          137 IRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       137 ~~p~~~l~~~~-l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      ..|++.+++.. +.. .+|+|.||++++||.|+|||+|||+..+          .++..|+.+|+.||.+|.
T Consensus       385 ~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~----------~~v~~Ai~~G~~AA~~I~  446 (449)
T TIGR01316       385 NGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGA----------ATVIRAMGQGKRAAKSIN  446 (449)
T ss_pred             CCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCc----------HHHHHHHHHHHHHHHHHH
Confidence            99999887654 655 5688999999999999999999998644          357789999999999985

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK10262 thioredoxin reductase; Provisional

Probab=99.91  E-value=7.8e-24  Score=201.38  Aligned_cols=183  Identities=24%  Similarity=0.277  Sum_probs=142.5

Q ss_pred             CCccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      .|+.+++||.+   ..+++.....+.      ..  ..+++++|||+|++|+|+|..|++.+.+||++++.+.+.   .+
T Consensus       116 ~~~~~~i~g~~~~~~~~v~~~~~~~~------~~--~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~  184 (321)
T PRK10262        116 SARYLGLPSEEAFKGRGVSACATCDG------FF--YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AE  184 (321)
T ss_pred             CCCCCCCCCHHHcCCCcEEEeecCCH------HH--cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CC
Confidence            46778899864   234444433222      11  258999999999999999999999999999999988752   46


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC------cEEecCeEEEecCCCCCchhhhcccccccCc
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG------NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGG  154 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g------~~i~~D~vi~a~G~~p~~~l~~~~l~~~~g~  154 (356)
                      +.+.+.+.+.|++.||++++++.+++++. +++.+..+++.++      +++++|.|++++|++||+.+++..+.+++|+
T Consensus       185 ~~~~~~~~~~l~~~gV~i~~~~~v~~v~~-~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~  263 (321)
T PRK10262        185 KILIKRLMDKVENGNIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGY  263 (321)
T ss_pred             HHHHHHHHhhccCCCeEEEeCCEEEEEEc-CCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCE
Confidence            77888899999999999999999999986 3334445555432      4799999999999999999887666667789


Q ss_pred             EEEec-----ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          155 IKVTG-----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       155 I~vd~-----~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      |.||+     +++|++|+|||+|||+....         ..+..|+.+|..||..|..
T Consensus       264 i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~---------~~~~~A~~~g~~Aa~~~~~  312 (321)
T PRK10262        264 IKVQSGIHGNATQTSIPGVFAAGDVMDHIY---------RQAITSAGTGCMAALDAER  312 (321)
T ss_pred             EEECCCCcccccccCCCCEEECeeccCCCc---------ceEEEEehhHHHHHHHHHH
Confidence            99997     78999999999999997532         1233477788888877643

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=99.91  E-value=7e-24  Score=198.36  Aligned_cols=270  Identities=25%  Similarity=0.408  Sum_probs=214.3

Q ss_pred             CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHC----CCcEEEEeeCCccCCccCCHHHHHHHHHH
Q 018416           15 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCMARLFTPKIASYYEEY   90 (356)
Q Consensus        15 ~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~----G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~   90 (356)
                      ...+.++|.+.|..++...+.+  .+++.|||+|++|.|+|+.|.+.    |.+|+-+......|...+++.+++.-.+.
T Consensus       325 k~kit~fr~p~DF~rlek~~ae--k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ek  402 (659)
T KOG1346|consen  325 KQKITYFRYPADFKRLEKGLAE--KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEK  402 (659)
T ss_pred             hhheeEEecchHHHHHHHhhhh--cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHH
Confidence            3578899999999999998874  48999999999999999999874    78898888888888888899999999999


Q ss_pred             HHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc--ccCcEEEecccccCCCC
Q 018416           91 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL--EKGGIKVTGRLQSSNSS  167 (356)
Q Consensus        91 l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~--~~g~I~vd~~l~ts~~~  167 (356)
                      +++.||.++.+..|.++..+ .+. ..++++||.++.+|.|++|+|-.||+++++.+ ++.  .-|++.||..++. -.|
T Consensus       403 ir~~GV~V~pna~v~sv~~~-~~n-l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-r~N  479 (659)
T KOG1346|consen  403 IRKGGVDVRPNAKVESVRKC-CKN-LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-REN  479 (659)
T ss_pred             HHhcCceeccchhhhhhhhh-ccc-eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-ccc
Confidence            99999999999999998763 333 45889999999999999999999999999876 665  4489999999887 478


Q ss_pred             EEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecC-ceEEEeecccc---------
Q 018416          168 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFT-LSWQFYGDNVG---------  237 (356)
Q Consensus       168 VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~-~~~~~~G~~~~---------  237 (356)
                      ||++||++.+.+.+.|. +++.|+.+|.-.||.|+.||.|..  .+|.....||+.... +.+..+|+-..         
T Consensus       480 vwvAGdaacF~D~~LGr-RRVehhdhavvSGRLAGENMtgAa--kpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA  556 (659)
T KOG1346|consen  480 VWVAGDAACFEDGVLGR-RRVEHHDHAVVSGRLAGENMTGAA--KPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFA  556 (659)
T ss_pred             eeeecchhhhhcccccc-eeccccccceeeceeccccccccc--CCccccceeeeccCcccccceeeecccCCCcceeee
Confidence            99999999999887775 567899999999999999999876  467777788875432 22333342110         


Q ss_pred             ---------eEEEE--------------------c--------cCC-CCceE---EEEeeCCeEEEEEEeCCCHHHHHHH
Q 018416          238 ---------EVVHY--------------------G--------NFS-GTTFG---AYWVNKGRLVGSFLEGGTKEEYEAI  276 (356)
Q Consensus       238 ---------~~~~~--------------------g--------~~~-~~~~~---~~~~~~g~ilGa~~vg~~~~~~~~~  276 (356)
                               ++-..                    +        ++. ...|+   .||++|++|+|..+++- =.++...
T Consensus       557 ~p~s~~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN~-Fnr~~~A  635 (659)
T KOG1346|consen  557 LPSSATRVDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWNL-FNRIGLA  635 (659)
T ss_pred             ccccccchhhhhhccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehhh-hccchhh
Confidence                     00000                    0        011 11253   37889999999999873 2367777


Q ss_pred             HHHHHcCCCcCcHHHHh
Q 018416          277 AKATRLQPVVEDLAELE  293 (356)
Q Consensus       277 a~ai~~~~~~~dl~~l~  293 (356)
                      .+.|..+...+||.+..
T Consensus       636 R~II~d~kk~ddlnEvA  652 (659)
T KOG1346|consen  636 RTIINDNKKYDDLNEVA  652 (659)
T ss_pred             HHHhccccchhhHHHHH
Confidence            88899999999987765

>PRK12831 putative oxidoreductase; Provisional

Probab=99.91  E-value=4.2e-23  Score=205.53  Aligned_cols=188  Identities=23%  Similarity=0.280  Sum_probs=145.1

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHH------hcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc-cCC
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVM------KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CMA   76 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l------~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~-~l~   76 (356)
                      +|+.+++||.+.++|++..++.+...+....      ....+++|+|||+|++|+|+|..|.++|.+||++.+++. -++
T Consensus       240 ~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~  319 (464)
T PRK12831        240 LPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELP  319 (464)
T ss_pred             CCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCC
Confidence            6889999999999999877665543322110      012579999999999999999999999999999998764 233


Q ss_pred             ccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC------------------CCc--EEecCeEEEecC
Q 018416           77 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR------------------DGN--RLPTDMVVVGIG  136 (356)
Q Consensus        77 ~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~------------------~g~--~i~~D~vi~a~G  136 (356)
                      . ...+     .+.+++.||++++++.++++..+++|++..+++.                  +|+  ++++|.||+++|
T Consensus       320 a-~~~e-----~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG  393 (464)
T PRK12831        320 A-RVEE-----VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLG  393 (464)
T ss_pred             C-CHHH-----HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCC
Confidence            2 1111     1345678999999999999986556766555442                  222  699999999999


Q ss_pred             CCCCchhhhc--cccc-ccCcEEEecc-cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          137 IRPNTSLFEG--QLTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       137 ~~p~~~l~~~--~l~~-~~g~I~vd~~-l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      ..|++.++..  ++.. .+|.|.||++ ++||.|+|||+|||+..+          ..+..|+.+|+.||.+|..
T Consensus       394 ~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~  458 (464)
T PRK12831        394 TSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGA----------ATVILAMGAGKKAAKAIDE  458 (464)
T ss_pred             CCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence            9999988764  3555 5688999998 999999999999998754          3467899999999999853

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.89  E-value=1.6e-22  Score=204.13  Aligned_cols=179  Identities=26%  Similarity=0.393  Sum_probs=138.3

Q ss_pred             CCccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+   ..+++.....+.      .+  ..+++++|||||++|+|+|..|++.|.+||++++.+++..    
T Consensus       322 ~~~~~~ipG~~~~~~~~v~~~~~~~~------~~--~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~----  389 (515)
T TIGR03140       322 RWRKLGVPGEKEYIGKGVAYCPHCDG------PF--FKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA----  389 (515)
T ss_pred             CcCCCCCCCHHHcCCCeEEEeeccCh------hh--cCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh----
Confidence            46778888853   245554433222      11  1579999999999999999999999999999999877532    


Q ss_pred             HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCC---C--cEEecCeEEEecCCCCCchhhhccccc-ccC
Q 018416           81 PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKG  153 (356)
Q Consensus        81 ~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g  153 (356)
                         ...+.+.|++ +||++++++.++++++ +++.+..+++.+   +  +++++|.|++++|.+||+++++..+.. .+|
T Consensus       390 ---~~~l~~~l~~~~gV~i~~~~~v~~i~~-~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G  465 (515)
T TIGR03140       390 ---DKVLQDKLKSLPNVDILTSAQTTEIVG-DGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRG  465 (515)
T ss_pred             ---hHHHHHHHhcCCCCEEEECCeeEEEEc-CCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCC
Confidence               2345667766 6999999999999976 345565666643   2  469999999999999999988765555 568


Q ss_pred             cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      +|.||+++||++|+|||+|||+..+..         ++..|+.+|..||.++..
T Consensus       466 ~I~vd~~~~Ts~p~IyAaGDv~~~~~~---------~~~~A~~~G~~Aa~~i~~  510 (515)
T TIGR03140       466 EIVIDERGRTSVPGIFAAGDVTTVPYK---------QIIIAMGEGAKAALSAFD  510 (515)
T ss_pred             eEEECCCCCCCCCCEEEcccccCCccc---------eEEEEEccHHHHHHHHHH
Confidence            899999999999999999999986532         234678899999988754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.89  E-value=8.9e-22  Score=184.44  Aligned_cols=177  Identities=24%  Similarity=0.337  Sum_probs=136.8

Q ss_pred             CCccCCCCCCCC---CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+.   .++++....+.      ..  ..+++++|||+|++|+|+|..|++.+.+|+++++.+.+..   +
T Consensus       111 ~~~~~~i~g~~~~~~~~~~~~~~~~~------~~--~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~  179 (300)
T TIGR01292       111 SARKLGIPGEDEFLGRGVSYCATCDG------PF--FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E  179 (300)
T ss_pred             CcccCCCCChhhcCCccEEEeeecCh------hh--cCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C
Confidence            577788898642   34443333222      11  1578999999999999999999999999999999876532   3


Q ss_pred             HHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeC-----CCcEEecCeEEEecCCCCCchhhhccccc-ccC
Q 018416           81 PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLR-----DGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKG  153 (356)
Q Consensus        81 ~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~-----~g~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g  153 (356)
                      +    .+.+.|+++ ||++++++++++++.  ++.+..+++.     +++++++|++++++|++|+.++++..+.. .+|
T Consensus       180 ~----~~~~~l~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g  253 (300)
T TIGR01292       180 K----ILLDRLRKNPNIEFLWNSTVKEIVG--DNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGG  253 (300)
T ss_pred             H----HHHHHHHhCCCeEEEeccEEEEEEc--cCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCC
Confidence            3    345667777 999999999999975  2344445442     23579999999999999999888765544 568


Q ss_pred             cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      +|.||++++|++|+||++|||+....         ..+..|+.||+.||.+|.
T Consensus       254 ~i~v~~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~  297 (300)
T TIGR01292       254 YIVTDEGMRTSVPGVFAAGDVRDKGY---------RQAVTAAGDGCIAALSAE  297 (300)
T ss_pred             cEEECCCCccCCCCEEEeecccCcch---------hhhhhhhhhHHHHHHHHH
Confidence            99999999999999999999997421         457789999999999985

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.88  E-value=1.2e-21  Score=188.84  Aligned_cols=185  Identities=26%  Similarity=0.341  Sum_probs=139.2

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHH------h---cCCCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCc
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVM------K---SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH   73 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l------~---~~~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~   73 (356)
                      .|+.+++||.+.+++++..  +++..+....      +   ...+++++|||+|++|+|+|..|.++|.+ ||++++.+.
T Consensus       130 ~~~~~~ipg~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        130 KSRKLGIPGEDLPGVYSAL--EYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             CCCcCCCCCccccCceeHH--HHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            4678899998888887632  3333332211      0   11268999999999999999999999997 999998764


Q ss_pred             cCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe--------------------CCCcEEecCeEEE
Q 018416           74 CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--------------------RDGNRLPTDMVVV  133 (356)
Q Consensus        74 ~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~--------------------~~g~~i~~D~vi~  133 (356)
                      .... ..    ..+.+.|+++||++++++.+++++.  ++.+..+++                    .+++++++|.+++
T Consensus       208 ~~~~-~~----~~~~~~l~~~gi~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~  280 (352)
T PRK12770        208 NEAP-AG----KYEIERLIARGVEFLELVTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVF  280 (352)
T ss_pred             hhCC-CC----HHHHHHHHHcCCEEeeccCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEE
Confidence            3221 22    3345568899999999999999975  233433432                    1235799999999


Q ss_pred             ecCCCCCchhhhc--cccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          134 GIGIRPNTSLFEG--QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       134 a~G~~p~~~l~~~--~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      ++|++|++.+..+  ++.. .+|+|.||++++|+.|+|||+|||+..+          ..+..|+.||+.||.+|..
T Consensus       281 a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~  347 (352)
T PRK12770        281 AIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHE  347 (352)
T ss_pred             CcccCCCchhhhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHH
Confidence            9999999988764  3544 5678999999999999999999998754          3467899999999999854

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.88  E-value=2.3e-22  Score=189.41  Aligned_cols=190  Identities=23%  Similarity=0.391  Sum_probs=153.1

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcC---------------CCCcEEEECCchHHHHHHHHHHH--------
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVI--------   60 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~---------------~~~~vvVvGgG~iGlE~A~~L~~--------   60 (356)
                      +|+.|++||.. ++.+.++.++||.+|+..+-..               +--++||||||+.|+|+|.+|+.        
T Consensus       169 ~~~TFgipGV~-e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k  247 (491)
T KOG2495|consen  169 EPNTFGIPGVE-ENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRK  247 (491)
T ss_pred             CCCCCCCCchh-hchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHH
Confidence            68999999985 7888999999999997655311               12369999999999999999985        


Q ss_pred             ------CCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEE
Q 018416           61 ------NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVV  132 (356)
Q Consensus        61 ------~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi  132 (356)
                            .-.+||+++..|++|+- ||..+.+..++.+.+.||++.+++.|..++.   .. ..+...+|  ++|++-+++
T Consensus       248 ~yp~l~~~i~vtLiEA~d~iL~m-Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~---~~-I~~~~~~g~~~~iPYG~lV  322 (491)
T KOG2495|consen  248 IYPELKKDIKVTLIEAADHILNM-FDKRLVEYAENQFVRDGIDLDTGTMVKKVTE---KT-IHAKTKDGEIEEIPYGLLV  322 (491)
T ss_pred             hhhcchhheEEEeeccchhHHHH-HHHHHHHHHHHHhhhccceeecccEEEeecC---cE-EEEEcCCCceeeecceEEE
Confidence                  25689999999999996 8999999999999999999999999999864   22 23444555  579999999


Q ss_pred             EecCCCCCchh--hhccccc-ccCcEEEeccccc-CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          133 VGIGIRPNTSL--FEGQLTL-EKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       133 ~a~G~~p~~~l--~~~~l~~-~~g~I~vd~~l~t-s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      |++|..|..-.  +...+.- .+.++.|||+||. +.+||||+|||+..+.       ..++++.|.+||..+|+++-
T Consensus       323 WatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~-------~~~tAQVA~QqG~yLAk~fn  393 (491)
T KOG2495|consen  323 WATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRG-------LKPTAQVAEQQGAYLAKNFN  393 (491)
T ss_pred             ecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEecccccccc-------CccHHHHHHHHHHHHHHHHH
Confidence            99998776532  2222222 3458999999998 8999999999994332       23689999999999999864

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.88  E-value=1.6e-21  Score=205.02  Aligned_cols=188  Identities=27%  Similarity=0.336  Sum_probs=145.0

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHH------hcCCCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCc-cC
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVM------KSCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH-CM   75 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l------~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~-~l   75 (356)
                      +|+.+++||.+.++|++..++.+...+....      ....+++|+|||||++|+|+|..+.++|.+ ||++++++. .+
T Consensus       529 ~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~  608 (752)
T PRK12778        529 LPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEM  608 (752)
T ss_pred             CCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccC
Confidence            5889999999999999776654443322111      012579999999999999999999999997 999998764 23


Q ss_pred             CccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---------CC-----------cEEecCeEEEec
Q 018416           76 ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMVVVGI  135 (356)
Q Consensus        76 ~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~vi~a~  135 (356)
                      +. ...++     +.+++.||++++++.+.++..+++|.+..+++.         +|           +++++|.||+++
T Consensus       609 ~~-~~~e~-----~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~  682 (752)
T PRK12778        609 PA-RLEEV-----KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSV  682 (752)
T ss_pred             CC-CHHHH-----HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECc
Confidence            32 11221     346788999999999999987566766655542         22           259999999999


Q ss_pred             CCCCCchhhhc--cccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          136 GIRPNTSLFEG--QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       136 G~~p~~~l~~~--~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      |.+|++.++..  ++.. .+|.|.||++++|+.|+|||+|||+..+          ..+..|+.+|+.||.+|..
T Consensus       683 G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~----------~~vv~Av~~G~~AA~~I~~  747 (752)
T PRK12778        683 GVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGG----------ATVILAMGDGKRAAAAIDE  747 (752)
T ss_pred             CCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCc----------HHHHHHHHHHHHHHHHHHH
Confidence            99999987654  3555 5688999999999999999999998754          3467899999999999864

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.88  E-value=3.5e-21  Score=191.78  Aligned_cols=187  Identities=27%  Similarity=0.292  Sum_probs=138.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhc-CCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCc-cCCccCC
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-CMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~-~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~-~l~~~~d   80 (356)
                      .|+.+++||.+.++|++................ ..+++|+|||+|++|+|+|..|.+.|. +||++++++. .++.  .
T Consensus       237 ~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~  314 (457)
T PRK11749        237 LPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--S  314 (457)
T ss_pred             CCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--C
Confidence            477889999988888864332222211000011 157999999999999999999999998 8999998765 3442  2


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe-------------------CCCcEEecCeEEEecCCCCCc
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-------------------RDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~-------------------~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      ..    ..+.+++.||++++++.++++..+ ++.+..+++                   .+++++++|.||+++|.+|++
T Consensus       315 ~~----~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~  389 (457)
T PRK11749        315 EE----EVEHAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP  389 (457)
T ss_pred             HH----HHHHHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence            22    245678899999999999999863 333222332                   123479999999999999998


Q ss_pred             hhhhc--cccc-ccCcEEEec-ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          142 SLFEG--QLTL-EKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       142 ~l~~~--~l~~-~~g~I~vd~-~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      .++..  .+.. .+|+|.||+ +++|+.|+|||+|||+..+          .++..|+.||+.||.+|..
T Consensus       390 ~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~----------~~~~~A~~~G~~aA~~I~~  449 (457)
T PRK11749        390 LILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGA----------ATVVWAVGDGKDAAEAIHE  449 (457)
T ss_pred             hhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence            87653  2444 578999998 8999999999999999542          3577899999999999864

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.86  E-value=6.7e-21  Score=200.62  Aligned_cols=200  Identities=27%  Similarity=0.360  Sum_probs=143.8

Q ss_pred             CCccCCCCCCCCCCeEE-eCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHC-C-CcEEEEeeCC-ccCCccC
Q 018416            4 KLEEFGLSGSDAENVCY-LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN-K-INVTMVFPEA-HCMARLF   79 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~-l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~-G-~~Vtlv~~~~-~~l~~~~   79 (356)
                      .|+.+++||.+ +++++ +..+.+..+....+.  .+++|||||||++|+|+|..+.+. | .+||++.|++ +.++. .
T Consensus       635 ~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~--~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~  710 (1019)
T PRK09853        635 KNGGLKLEGGN-QNVIKALPFLEEYKNKGTALK--LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-W  710 (1019)
T ss_pred             CCCCCCCCCcc-CCceehHHHHHHHhhhccccc--CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-c
Confidence            46677899876 56653 222333222222222  589999999999999999999888 4 4899999886 34554 4


Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEE----------------EEEeCCCcEEecCeEEEecCCCCCchh
Q 018416           80 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV----------------AVNLRDGNRLPTDMVVVGIGIRPNTSL  143 (356)
Q Consensus        80 d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~----------------~v~~~~g~~i~~D~vi~a~G~~p~~~l  143 (356)
                      ++++.    +.+ +.||++++++.++++..  +|++.                .+...++.++++|.||+|+|.+|++++
T Consensus       711 ~eEle----~Al-eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel  783 (1019)
T PRK09853        711 REEYE----EAL-EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL  783 (1019)
T ss_pred             HHHHH----HHH-HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH
Confidence            44443    322 46999999999888863  33321                122334467999999999999999998


Q ss_pred             hhcc-ccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE
Q 018416          144 FEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFY  221 (356)
Q Consensus       144 ~~~~-l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~  221 (356)
                      +... +.. .+|+|.||++++|+.|+|||+|||+..+          ..+..|+.||+.||.+|++... ..+...|.++
T Consensus       784 le~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp----------~tvv~Ai~qGr~AA~nI~~~~~-~~~~~~~~~~  852 (1019)
T PRK09853        784 LKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP----------STIVAAIADARRAADAILSREG-IRSHQNDKYW  852 (1019)
T ss_pred             HHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCc----------hHHHHHHHHHHHHHHHHhhhcC-CCcccccccc
Confidence            8654 555 5688999999999999999999998654          3467899999999999997653 2444555555


Q ss_pred             EEec
Q 018416          222 SRVF  225 (356)
Q Consensus       222 ~~~~  225 (356)
                      +..+
T Consensus       853 ~~~~  856 (1019)
T PRK09853        853 NNVE  856 (1019)
T ss_pred             cccc
Confidence            5544

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.86  E-value=7.8e-21  Score=193.35  Aligned_cols=178  Identities=24%  Similarity=0.344  Sum_probs=134.0

Q ss_pred             CCccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+   ..+++++.+.++.      .  ..+++++|||||++|+|+|..|+++|.+||++++++.+..   +
T Consensus       113 ~p~~~~ipG~~~~~~~~v~~~~~~~~~------~--~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~  181 (555)
T TIGR03143       113 SPRKLGFPGEEEFTGRGVAYCATCDGE------F--FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---A  181 (555)
T ss_pred             ccCCCCCCCHHHhCCceEEEEeecChh------h--cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---C
Confidence            57788999963   3456555443221      1  1589999999999999999999999999999999987532   3


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE---eCCCcEE----ecCe----EEEecCCCCCchhhhcccc
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGNRL----PTDM----VVVGIGIRPNTSLFEGQLT  149 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~---~~~g~~i----~~D~----vi~a~G~~p~~~l~~~~l~  149 (356)
                      ....   .+.++.+||++++++.++++..  ++.+..+.   ..+|+..    ++|.    |++++|++|++.+++..+.
T Consensus       182 ~~~~---~~~~~~~gV~i~~~~~V~~i~~--~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~  256 (555)
T TIGR03143       182 KLIA---EKVKNHPKIEVKFNTELKEATG--DDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVE  256 (555)
T ss_pred             HHHH---HHHHhCCCcEEEeCCEEEEEEc--CCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcc
Confidence            3332   2334557999999999999974  33333333   2456542    3676    9999999999999887666


Q ss_pred             c-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          150 L-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       150 ~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      . ++|+|.||++|+|++|+|||+|||+....         ..+..|..||+.||.+|.
T Consensus       257 l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---------~~v~~A~~~G~~Aa~~i~  305 (555)
T TIGR03143       257 LDKRGYIPTNEDMETNVPGVYAAGDLRPKEL---------RQVVTAVADGAIAATSAE  305 (555)
T ss_pred             cCCCCeEEeCCccccCCCCEEEceeccCCCc---------chheeHHhhHHHHHHHHH
Confidence            6 56889999999999999999999975321         345679999999999985

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.86  E-value=6.5e-21  Score=192.52  Aligned_cols=179  Identities=25%  Similarity=0.380  Sum_probs=137.4

Q ss_pred             CCccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+   ..++++....+.      ..  .++|+++|||+|++|+|+|..|+..+.+||++++.+.+..   +
T Consensus       321 ~~r~~~ipG~~~~~~~~v~~~~~~~~------~~--~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~  389 (517)
T PRK15317        321 RWRNMNVPGEDEYRNKGVAYCPHCDG------PL--FKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D  389 (517)
T ss_pred             CcCCCCCCCHHHhcCceEEEeeccCc------hh--cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c
Confidence            46778888863   234544332211      11  2689999999999999999999999999999999887533   2


Q ss_pred             HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeC---CC--cEEecCeEEEecCCCCCchhhhccccc-ccC
Q 018416           81 PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKG  153 (356)
Q Consensus        81 ~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g  153 (356)
                          ..+.+.+.+ .||++++++.+++++. +++.+..+++.   +|  +++++|.+++++|.+||+++++..+.. ++|
T Consensus       390 ----~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g  464 (517)
T PRK15317        390 ----QVLQDKLRSLPNVTIITNAQTTEVTG-DGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRG  464 (517)
T ss_pred             ----HHHHHHHhcCCCcEEEECcEEEEEEc-CCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCC
Confidence                344556665 6999999999999986 34666666654   33  359999999999999999988765555 568


Q ss_pred             cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      +|.||+++||+.|+|||+|||+..+.         ..+..|+.+|..||.++..
T Consensus       465 ~i~vd~~l~Ts~p~IyAaGDv~~~~~---------k~~~~A~~eG~~Aa~~~~~  509 (517)
T PRK15317        465 EIIVDARGATSVPGVFAAGDCTTVPY---------KQIIIAMGEGAKAALSAFD  509 (517)
T ss_pred             cEEECcCCCCCCCCEEECccccCCCC---------CEEEEhhhhHHHHHHHHHH
Confidence            89999999999999999999998653         2345678888888887754

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.86  E-value=1.1e-20  Score=188.76  Aligned_cols=193  Identities=26%  Similarity=0.355  Sum_probs=137.9

Q ss_pred             CCccCCCCCCCCCCeEEeCCHH-HHHH-HHHH--H--hcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCccCC
Q 018416            4 KLEEFGLSGSDAENVCYLRDLA-DANR-LVNV--M--KSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMA   76 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~-da~~-i~~~--l--~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~l~   76 (356)
                      .|+.+++||.+.++|++..+.- .+.. +...  .  ....+++|+|||+|++|+|+|..+.++|. +||++++.+.+..
T Consensus       240 ~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~  319 (471)
T PRK12810        240 KPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPS  319 (471)
T ss_pred             CCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcc
Confidence            4778899999999998643321 1110 0000  0  01257999999999999999999999986 7997766553322


Q ss_pred             ccCCH----HH-HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-----CC---------cEEecCeEEEecCC
Q 018416           77 RLFTP----KI-ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----DG---------NRLPTDMVVVGIGI  137 (356)
Q Consensus        77 ~~~d~----~~-~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-----~g---------~~i~~D~vi~a~G~  137 (356)
                      ..++.    .. .....+.+++.||++++++.++++.. +++++..+++.     +|         +++++|.||+++|.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~  398 (471)
T PRK12810        320 RRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF  398 (471)
T ss_pred             ccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence            21110    01 11134567788999999999999975 46766655432     22         46999999999999


Q ss_pred             CCCc-hhhhcc-ccc-ccCcEEEe-cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          138 RPNT-SLFEGQ-LTL-EKGGIKVT-GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       138 ~p~~-~l~~~~-l~~-~~g~I~vd-~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      +|+. .+++.. +.. .+|.|.+| ++++|+.|+|||+|||+..+          .++..|+.||+.||.+|..
T Consensus       399 ~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~----------~~~~~Av~~G~~AA~~i~~  462 (471)
T PRK12810        399 TGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQ----------SLVVWAIAEGRQAARAIDA  462 (471)
T ss_pred             CCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCc----------hhHHHHHHHHHHHHHHHHH
Confidence            9985 465543 555 56889998 79999999999999999743          2467899999999999864

>PRK13984 putative oxidoreductase; Provisional

Probab=99.85  E-value=6.6e-20  Score=188.63  Aligned_cols=183  Identities=25%  Similarity=0.259  Sum_probs=134.6

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhc-----CCCCcEEEECCchHHHHHHHHHHHCCC------cEEEEeeC-
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-----CSGGNAVVIGGGYIGMECAASLVINKI------NVTMVFPE-   71 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~-----~~~~~vvVvGgG~iGlE~A~~L~~~G~------~Vtlv~~~-   71 (356)
                      .|+.+++||.+.+++++  ..+....+.+.+..     ..+++++|||||++|+|+|..|.+++.      +|+++... 
T Consensus       380 ~~r~l~i~G~~~~gv~~--a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r  457 (604)
T PRK13984        380 LGRSTRIPGTDHPDVIQ--ALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLER  457 (604)
T ss_pred             CCccCCCCCcCCcCeEe--HHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEecccc
Confidence            47889999998888874  34444445444321     136899999999999999999998853      78887432 


Q ss_pred             -CccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC--------CC-----------cEEecCeE
Q 018416           72 -AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--------DG-----------NRLPTDMV  131 (356)
Q Consensus        72 -~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~--------~g-----------~~i~~D~v  131 (356)
                       ...++. .+.+    +.+ +.+.||++++++.++++.. +++++..+++.        +|           +++++|.|
T Consensus       458 ~~~~~~~-~~~e----~~~-~~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~V  530 (604)
T PRK13984        458 TFEEMPA-DMEE----IEE-GLEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMV  530 (604)
T ss_pred             CcccCCC-CHHH----HHH-HHHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEE
Confidence             222332 1222    222 3467999999999988865 46666555432        12           36999999


Q ss_pred             EEecCCCCCchhhhcc----cccccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          132 VVGIGIRPNTSLFEGQ----LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       132 i~a~G~~p~~~l~~~~----l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      |+++|++|++.++...    +..++|+|.||+++|||+|+|||+|||+..+.           ...|+.+|+.||.+|.
T Consensus       531 i~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~-----------~v~Ai~~G~~AA~~I~  598 (604)
T PRK13984        531 VEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPD-----------IIHGVADGYWAAEGID  598 (604)
T ss_pred             EEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCchH-----------HHHHHHHHHHHHHHHH
Confidence            9999999999877532    33457889999999999999999999997542           3568999999999985

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.84  E-value=5.5e-20  Score=195.77  Aligned_cols=189  Identities=22%  Similarity=0.248  Sum_probs=140.5

Q ss_pred             CCCccCCCCCCCCCCeEEeCCHHHHHHHHHHH--------hcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc-
Q 018416            3 LKLEEFGLSGSDAENVCYLRDLADANRLVNVM--------KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-   73 (356)
Q Consensus         3 ~~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l--------~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~-   73 (356)
                      -+|+.++|||.++++|++..++.+...+....        ....+|+|+|||||.+|+++|..+.++|.+||++.+++. 
T Consensus       403 ~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~  482 (944)
T PRK12779        403 GLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKS  482 (944)
T ss_pred             CCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcc
Confidence            36899999999999999766654443322111        112579999999999999999999999999999998764 


Q ss_pred             cCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCC-CcEEEEEe---------C--------CC--cEEecCeEEE
Q 018416           74 CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNL---------R--------DG--NRLPTDMVVV  133 (356)
Q Consensus        74 ~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-g~v~~v~~---------~--------~g--~~i~~D~vi~  133 (356)
                      .++. ...    .++. ..+.||++++++.++++..+++ +.+..+++         .        +|  .++++|.||+
T Consensus       483 ~mpa-~~~----e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~  556 (944)
T PRK12779        483 EMPA-RVE----ELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIM  556 (944)
T ss_pred             cccc-cHH----HHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEE
Confidence            3332 122    2222 3467999999999999976433 34544332         1        12  3599999999


Q ss_pred             ecCCCCCchhhhc--cccc-ccCcEEEec-ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          134 GIGIRPNTSLFEG--QLTL-EKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       134 a~G~~p~~~l~~~--~l~~-~~g~I~vd~-~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      |+|..|++.+...  +++. .+|.|.||+ .++||.|+|||+|||+..+          .++..|+.+|+.||.+|..
T Consensus       557 AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~  624 (944)
T PRK12779        557 ALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG----------STAIRAAGDGQAAAKEIVG  624 (944)
T ss_pred             cCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHH
Confidence            9999999865443  2554 568899997 5899999999999999754          3567899999999999864

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.84  E-value=1.1e-19  Score=181.28  Aligned_cols=187  Identities=26%  Similarity=0.405  Sum_probs=137.8

Q ss_pred             CccCCCCCCCCCCeEEeCCHHH--HHHHHHH-------HhcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCcc
Q 018416            5 LEEFGLSGSDAENVCYLRDLAD--ANRLVNV-------MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC   74 (356)
Q Consensus         5 p~~~~ipG~~~~~v~~l~~~~d--a~~i~~~-------l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~   74 (356)
                      +..++|||.++++|++..++..  ...+...       +....+++++|||+|++|+|+|..+.++|. +||++++++..
T Consensus       239 ~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~  318 (467)
T TIGR01318       239 SMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEA  318 (467)
T ss_pred             CCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcc
Confidence            4568899999999996543211  1111000       001247899999999999999999999996 79999998763


Q ss_pred             -CCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---------CC-----------cEEecCeEEE
Q 018416           75 -MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMVVV  133 (356)
Q Consensus        75 -l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~vi~  133 (356)
                       ++. .+.++     +.+++.||++++++.++++..+++|++..+++.         +|           +++++|.||+
T Consensus       319 ~~~~-~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~  392 (467)
T TIGR01318       319 NMPG-SRREV-----ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIM  392 (467)
T ss_pred             cCCC-CHHHH-----HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEE
Confidence             443 33333     346788999999999999976556666555431         12           3699999999


Q ss_pred             ecCCCCCc-hhhhc-cccc-ccCcEEEe----cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          134 GIGIRPNT-SLFEG-QLTL-EKGGIKVT----GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       134 a~G~~p~~-~l~~~-~l~~-~~g~I~vd----~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      ++|++|+. .+++. .+.. .+|+|.||    ++++|+.|+|||+|||+..+.          .+..|+.+|+.||.+|.
T Consensus       393 a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~----------~~~~Ai~~G~~aA~~i~  462 (467)
T TIGR01318       393 AFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD----------LVVTAVAEGRQAAQGIL  462 (467)
T ss_pred             CCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCcc----------HHHHHHHHHHHHHHHHH
Confidence            99999985 44443 2555 56889999    689999999999999987542          45689999999999985


Q ss_pred             C
Q 018416          207 E  207 (356)
Q Consensus       207 g  207 (356)
                      .
T Consensus       463 ~  463 (467)
T TIGR01318       463 D  463 (467)
T ss_pred             H
Confidence            3

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.84  E-value=5.7e-20  Score=190.08  Aligned_cols=185  Identities=25%  Similarity=0.349  Sum_probs=134.5

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCc-cCCccCCH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-CMARLFTP   81 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~-~l~~~~d~   81 (356)
                      .+..+++||.+.++|++-.++-........  ...+++|+|||+|++|+|+|..+.+.|. +||++.+++. .|+. .+.
T Consensus       290 ~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~--~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~~  366 (652)
T PRK12814        290 KASKMGIPGEELPGVISGIDFLRNVALGTA--LHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NRA  366 (652)
T ss_pred             CCCCCCCCCcCcCCcEeHHHHHHHhhcCCc--ccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHH
Confidence            345788999998888743221111100001  1258999999999999999999999997 5999998875 4554 343


Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcE--EEEEeC---------------CCc--EEecCeEEEecCCCCCch
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV--VAVNLR---------------DGN--RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v--~~v~~~---------------~g~--~i~~D~vi~a~G~~p~~~  142 (356)
                      ++    .+. .+.||++++++.++++..+ ++.+  ..+.+.               +|+  ++++|.||+++|..|++.
T Consensus       367 ei----~~a-~~eGV~i~~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~  440 (652)
T PRK12814        367 EI----EEA-LAEGVSLRELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPP  440 (652)
T ss_pred             HH----HHH-HHcCCcEEeccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcc
Confidence            33    222 3579999999999998763 3332  222221               122  599999999999999998


Q ss_pred             hhhcc-ccc-ccCcEEEec-ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          143 LFEGQ-LTL-EKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       143 l~~~~-l~~-~~g~I~vd~-~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      ++... +.. .+|+|.||+ +++|+.|+|||+|||+..+          .++..|+.||+.||.+|..
T Consensus       441 ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~----------~~v~~Ai~~G~~AA~~I~~  498 (652)
T PRK12814        441 IAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGA----------DIAINAVEQGKRAAHAIDL  498 (652)
T ss_pred             cccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence            87654 555 468899997 6899999999999998754          3467899999999999864

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.83  E-value=7.9e-20  Score=196.07  Aligned_cols=188  Identities=21%  Similarity=0.267  Sum_probs=141.4

Q ss_pred             CCCccCCCCCCCCCCeEEeCCHHHHHHHHHH-----Hh--cCCCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCcc
Q 018416            3 LKLEEFGLSGSDAENVCYLRDLADANRLVNV-----MK--SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHC   74 (356)
Q Consensus         3 ~~p~~~~ipG~~~~~v~~l~~~~da~~i~~~-----l~--~~~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~~   74 (356)
                      .+|+.++|||.++++|++..++.+...+...     ..  ...+|+|+|||||++|+++|..+.++|.+ |+++.++...
T Consensus       528 ~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~  607 (1006)
T PRK12775        528 GAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEA  607 (1006)
T ss_pred             CCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcc
Confidence            3689999999999999976655444332110     00  12579999999999999999999999985 8888776432


Q ss_pred             -CCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-----------------CC--cEEecCeEEEe
Q 018416           75 -MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------------DG--NRLPTDMVVVG  134 (356)
Q Consensus        75 -l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-----------------~g--~~i~~D~vi~a  134 (356)
                       ++.  .+.    ..+.+++.||++++++.++++..+++|++..+++.                 +|  .++++|.||++
T Consensus       608 em~a--~~~----e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~A  681 (1006)
T PRK12775        608 EAPA--RIE----EIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYA  681 (1006)
T ss_pred             cCCC--CHH----HHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEEC
Confidence             221  111    12456788999999999999976567777665432                 12  25999999999


Q ss_pred             cCCCCCchhhhc--cccc-ccCcEEEec-----ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          135 IGIRPNTSLFEG--QLTL-EKGGIKVTG-----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       135 ~G~~p~~~l~~~--~l~~-~~g~I~vd~-----~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      +|++|++.+...  ++.+ .+|.|.+|+     +++||.|+|||+|||+..+          .++..|+.+|+.||.+|.
T Consensus       682 iG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~  751 (1006)
T PRK12775        682 LGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIA  751 (1006)
T ss_pred             CCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHH
Confidence            999999887654  3555 568899996     7899999999999998754          346789999999999875

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.83  E-value=1.6e-19  Score=187.13  Aligned_cols=188  Identities=24%  Similarity=0.372  Sum_probs=138.1

Q ss_pred             CCccCCCCCCCCCCeEEeCC-----HHHHHHHHHHH----hcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCc
Q 018416            4 KLEEFGLSGSDAENVCYLRD-----LADANRLVNVM----KSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH   73 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~-----~~da~~i~~~l----~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~   73 (356)
                      .+..+++||.+.++|+..-+     ..+...+....    ....+++|+|||+|++|+|+|..+.++|. +||++.+++.
T Consensus       424 ~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~  503 (654)
T PRK12769        424 RSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE  503 (654)
T ss_pred             CCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence            46678999999999985321     11111111000    01257899999999999999999999996 6999998765


Q ss_pred             c-CCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---------CC-----------cEEecCeEE
Q 018416           74 C-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMVV  132 (356)
Q Consensus        74 ~-l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~vi  132 (356)
                      . ++. .+.+     .+.+++.||++++++.++++..+++|++..+++.         +|           .++++|+||
T Consensus       504 ~~~~~-~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi  577 (654)
T PRK12769        504 ANMPG-SKKE-----VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVI  577 (654)
T ss_pred             CCCCC-CHHH-----HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEE
Confidence            4 443 2322     3457789999999999999976556776655541         22           259999999


Q ss_pred             EecCCCCCc-hhhhcc-ccc-ccCcEEEec----ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHH
Q 018416          133 VGIGIRPNT-SLFEGQ-LTL-EKGGIKVTG----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI  205 (356)
Q Consensus       133 ~a~G~~p~~-~l~~~~-l~~-~~g~I~vd~----~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  205 (356)
                      +++|+.|++ .+++.. +.+ .+|.|.||+    +++||.|+|||+||++..+.          ++..|+.+|+.||.+|
T Consensus       578 ~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~----------~vv~Ai~~Gr~AA~~I  647 (654)
T PRK12769        578 MAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD----------LVVTAMAEGRHAAQGI  647 (654)
T ss_pred             ECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCc----------HHHHHHHHHHHHHHHH
Confidence            999999986 455443 555 568899986    58999999999999987543          4678999999999998


Q ss_pred             cC
Q 018416          206 ME  207 (356)
Q Consensus       206 ~g  207 (356)
                      ..
T Consensus       648 ~~  649 (654)
T PRK12769        648 ID  649 (654)
T ss_pred             HH
Confidence            64

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.83  E-value=2.5e-19  Score=179.40  Aligned_cols=194  Identities=22%  Similarity=0.317  Sum_probs=136.7

Q ss_pred             CCccCCCCCCCCCCeEEeCC-HHHHHHHHH--HH-----hcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCcc
Q 018416            4 KLEEFGLSGSDAENVCYLRD-LADANRLVN--VM-----KSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC   74 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~-~~da~~i~~--~l-----~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~   74 (356)
                      .|..+++||.+.++|++... +.++..+..  ..     ....+|+|+|||+|++|+|+|..+.++|. +|+++++.+.+
T Consensus       240 ~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~  319 (485)
T TIGR01317       240 KPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKP  319 (485)
T ss_pred             CCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence            47889999999999997543 333322211  00     01257999999999999999888888775 79999988776


Q ss_pred             CCccC-C------H---HHHHHHHHHHHhCCCEE-EeCCeeeEEEEcCCCcEEEEEe--------CCC-----------c
Q 018416           75 MARLF-T------P---KIASYYEEYYKSKGVKF-VKGTVLSSFDVDSNGKVVAVNL--------RDG-----------N  124 (356)
Q Consensus        75 l~~~~-d------~---~~~~~~~~~l~~~GV~v-~~~~~v~~i~~~~~g~v~~v~~--------~~g-----------~  124 (356)
                      +.... +      +   ++....++..+..||++ ++++.+.++..++++.+..+++        .+|           +
T Consensus       320 ~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~  399 (485)
T TIGR01317       320 PEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEE  399 (485)
T ss_pred             hhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceE
Confidence            54211 1      0   12223344444567754 5678888887644466665543        133           2


Q ss_pred             EEecCeEEEecCCC-CCchhhhcc-ccc-ccCcEEE-ecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHH
Q 018416          125 RLPTDMVVVGIGIR-PNTSLFEGQ-LTL-EKGGIKV-TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH  200 (356)
Q Consensus       125 ~i~~D~vi~a~G~~-p~~~l~~~~-l~~-~~g~I~v-d~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~  200 (356)
                      ++++|.||+++|.. |++.+++.. +.. .+|.|.+ |++++|+.|+|||+|||+..+          ..+..|+.+|+.
T Consensus       400 ~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~  469 (485)
T TIGR01317       400 VFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRK  469 (485)
T ss_pred             EEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCc----------HHHHHHHHHHHH
Confidence            69999999999986 888877654 554 4677854 678999999999999998653          246679999999


Q ss_pred             HHHHHcC
Q 018416          201 AVAAIME  207 (356)
Q Consensus       201 aa~~i~g  207 (356)
                      ||.+|..
T Consensus       470 AA~~i~~  476 (485)
T TIGR01317       470 AAAAVDR  476 (485)
T ss_pred             HHHHHHH
Confidence            9999854

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=2.3e-19  Score=168.36  Aligned_cols=175  Identities=29%  Similarity=0.377  Sum_probs=137.3

Q ss_pred             CCccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      .++.+++||.+   ..+|+++-+- |. .+       ++|+++|||||.+++|-|..|.+.+.+||+++|++.+-+   .
T Consensus       114 ~~~~~~~~~e~e~~g~gv~yc~~c-dg-~~-------~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra---~  181 (305)
T COG0492         114 GARKLGVPGEEEFEGKGVSYCATC-DG-FF-------KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA---E  181 (305)
T ss_pred             cccCCCCCcchhhcCCceEEeeec-Cc-cc-------cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc---C
Confidence            35666677533   2477776653 32 22       678999999999999999999999999999999988554   2


Q ss_pred             HHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCC----cEEecCeEEEecCCCCCchhhhccccc-ccCc
Q 018416           81 PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGG  154 (356)
Q Consensus        81 ~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~  154 (356)
                          +.+.+.++++ +|++++++.+.++.++  + +..+++.+.    +.+++|.+++++|..|++++++....+ ++|+
T Consensus       182 ----~~~~~~l~~~~~i~~~~~~~i~ei~G~--~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~  254 (305)
T COG0492         182 ----EILVERLKKNVKIEVLTNTVVKEILGD--D-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGY  254 (305)
T ss_pred             ----HHHHHHHHhcCCeEEEeCCceeEEecC--c-cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCc
Confidence                3345555555 8999999999999863  2 556666653    368999999999999999998876444 7899


Q ss_pred             EEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          155 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       155 I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      |.||+.|+||+|+|||+|||+....         .++..|..+|..||.++.
T Consensus       255 I~v~~~~~TsvpGifAaGDv~~~~~---------rqi~ta~~~G~~Aa~~a~  297 (305)
T COG0492         255 IVVDEEMETSVPGIFAAGDVADKNG---------RQIATAAGDGAIAALSAE  297 (305)
T ss_pred             EEcCCCcccCCCCEEEeEeeccCcc---------cEEeehhhhHHHHHHHHH
Confidence            9999999999999999999998764         245567778888887654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.80  E-value=1.9e-18  Score=182.97  Aligned_cols=184  Identities=24%  Similarity=0.363  Sum_probs=132.4

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHH-hcCCCCcEEEECCchHHHHHHHHHHHC-CC-cEEEEeeCC-ccCCccC
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVM-KSCSGGNAVVIGGGYIGMECAASLVIN-KI-NVTMVFPEA-HCMARLF   79 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l-~~~~~~~vvVvGgG~iGlE~A~~L~~~-G~-~Vtlv~~~~-~~l~~~~   79 (356)
                      .++.+++||.+ ++++  .+++....+.... ....+++|+|||||++|+|+|..+.+. |. +||++.+++ ..++. .
T Consensus       633 ~~~~l~I~G~~-~~v~--~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~  708 (1012)
T TIGR03315       633 KHGPLRLEGGG-ERVL--KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-S  708 (1012)
T ss_pred             CCCCCCcCCCC-ccee--eHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-C
Confidence            45667888864 4554  2333333332210 012589999999999999999999886 75 799999876 34554 4


Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEE--------------EeCCC--cEEecCeEEEecCCCCCchh
Q 018416           80 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV--------------NLRDG--NRLPTDMVVVGIGIRPNTSL  143 (356)
Q Consensus        80 d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v--------------~~~~g--~~i~~D~vi~a~G~~p~~~l  143 (356)
                      ++++.    +. .+.||+++++..+.+++   ++.+...              ...+|  .++++|+||+|+|.+|++++
T Consensus       709 ~eEl~----~a-leeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~l  780 (1012)
T TIGR03315       709 REELE----EA-LEDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL  780 (1012)
T ss_pred             HHHHH----HH-HHcCCEEEeCCceEEEE---CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHH
Confidence            44433    22 24799999998888885   2222111              11123  36899999999999999998


Q ss_pred             hhcc-ccc-ccCcEEEecc-cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          144 FEGQ-LTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       144 ~~~~-l~~-~~g~I~vd~~-l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      ++.. +.. .+|+|.||++ ++|+.|+|||+|||+..+          ..+..|+.||+.||.+|++..
T Consensus       781 le~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP----------~tVv~AIaqGr~AA~nIl~~~  839 (1012)
T TIGR03315       781 LQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP----------ATIVEAIADGRKAANAILSRE  839 (1012)
T ss_pred             HHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCc----------cHHHHHHHHHHHHHHHHhccc
Confidence            8654 555 5688999986 899999999999998654          357789999999999998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.80  E-value=1.3e-18  Score=179.68  Aligned_cols=188  Identities=22%  Similarity=0.346  Sum_probs=136.7

Q ss_pred             CCccCCCCCCCCCCeEEeCC-----HHHHHHHHHH----HhcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCc
Q 018416            4 KLEEFGLSGSDAENVCYLRD-----LADANRLVNV----MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH   73 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~-----~~da~~i~~~----l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~   73 (356)
                      .+..+++||.+.+++++.-.     ..+...+.+.    +....+|+++|||+|.+++++|..+.++|. +||++.+++.
T Consensus       407 ~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~  486 (639)
T PRK12809        407 GMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE  486 (639)
T ss_pred             CCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            45678899999999886211     1111111110    111257999999999999999999999995 7999998865


Q ss_pred             c-CCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe---C------CC-----------cEEecCeEE
Q 018416           74 C-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---R------DG-----------NRLPTDMVV  132 (356)
Q Consensus        74 ~-l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~---~------~g-----------~~i~~D~vi  132 (356)
                      . ++. .+.++     ..+++.||++++++.++++..+++|++..+++   .      +|           .++++|.||
T Consensus       487 ~~~~~-~~~e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi  560 (639)
T PRK12809        487 VSMPG-SRKEV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLI  560 (639)
T ss_pred             ccCCC-CHHHH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEE
Confidence            5 443 33333     23567899999999999998655676655432   1      12           368999999


Q ss_pred             EecCCCCCc-hhhhc-cccc-ccCcEEEec----ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHH
Q 018416          133 VGIGIRPNT-SLFEG-QLTL-EKGGIKVTG----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI  205 (356)
Q Consensus       133 ~a~G~~p~~-~l~~~-~l~~-~~g~I~vd~----~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  205 (356)
                      +++|++|+. .+++. ++.. .+|.|.+|+    +++|+.|+|||+|||+..+          .++..|+.+|+.||.+|
T Consensus       561 ~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~----------~~vv~Ai~~Gr~AA~~i  630 (639)
T PRK12809        561 MAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGA----------DLVVTAMAAGRQAARDM  630 (639)
T ss_pred             ECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCc----------hHHHHHHHHHHHHHHHH
Confidence            999999975 44443 3555 568899985    4899999999999998754          34678999999999998


Q ss_pred             cC
Q 018416          206 ME  207 (356)
Q Consensus       206 ~g  207 (356)
                      ..
T Consensus       631 ~~  632 (639)
T PRK12809        631 LT  632 (639)
T ss_pred             HH
Confidence            64

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.73  E-value=1.3e-16  Score=162.89  Aligned_cols=186  Identities=25%  Similarity=0.314  Sum_probs=133.5

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCcc-CCccCCH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC-MARLFTP   81 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~-l~~~~d~   81 (356)
                      .+..+.++|.+..+++..-.+..  ..........+++++|+|+|..+++++..+.++| .+|+++.+.+.. ++. .+.
T Consensus       234 ~~~~~~i~g~~~~gv~~~~~~l~--~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~-~~~  310 (564)
T PRK12771        234 LGKRLPIPGEDAAGVLDAVDFLR--AVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA-HDE  310 (564)
T ss_pred             CCCcCCCCCCccCCcEEHHHHHH--HhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC-CHH
Confidence            34567888887777764322111  1100001224799999999999999999999998 679999987642 332 333


Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcE----EEEEe----CCC---------cEEecCeEEEecCCCCCchhh
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV----VAVNL----RDG---------NRLPTDMVVVGIGIRPNTSLF  144 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v----~~v~~----~~g---------~~i~~D~vi~a~G~~p~~~l~  144 (356)
                      ++     +...+.||++++++.+.++..++++.+    ..+++    .+|         .++++|+||+++|..|++.++
T Consensus       311 ~~-----~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~  385 (564)
T PRK12771        311 EI-----EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGL  385 (564)
T ss_pred             HH-----HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhh
Confidence            32     234567999999999999976444432    12222    122         379999999999999999887


Q ss_pred             hc--ccccccCcEEEec-ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          145 EG--QLTLEKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       145 ~~--~l~~~~g~I~vd~-~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      +.  .+..++|.|.||+ +++|+.|+|||+|||+..+          .++..|+.||+.||.+|..
T Consensus       386 ~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~----------~~v~~Av~~G~~aA~~i~~  441 (564)
T PRK12771        386 ESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP----------RTVTTAIGHGKKAARNIDA  441 (564)
T ss_pred             hhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence            74  3444678899998 7899999999999998754          3577899999999999853

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.73  E-value=1.1e-16  Score=172.53  Aligned_cols=173  Identities=17%  Similarity=0.174  Sum_probs=131.0

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCccCCccCCHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|+.+++||.+.++|++.....+..+  .+ ...++++++|||+|++|+|+|..|++.|. .|+++++.+.+        
T Consensus       285 ~~r~~pipG~~~pgV~~~~~~~~~l~--~~-~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------  353 (985)
T TIGR01372       285 HERPLVFANNDRPGVMLAGAARTYLN--RY-GVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------  353 (985)
T ss_pred             CCcCCCCCCCCCCCcEEchHHHHHHH--hh-CcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------
Confidence            57888999999999998765554322  11 11257999999999999999999999996 57888876543        


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC----CCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEE
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR----DGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKV  157 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~----~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~v  157 (356)
                       ...+.+.|+++||++++++.++++..  ++.+..+++.    ++++++||.|+++.|++||++++... ..     +..
T Consensus       354 -~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~-----~~~  425 (985)
T TIGR01372       354 -SPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK-----LAW  425 (985)
T ss_pred             -hHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC-----eee
Confidence             22356778999999999999999975  3444455543    45689999999999999999988643 22     222


Q ss_pred             ecc-----cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          158 TGR-----LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       158 d~~-----l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      |+.     -.|+.|+||++|||+...           .+..|..+|+.||..++
T Consensus       426 ~~~~~~~~~~t~v~gVyaaGD~~g~~-----------~~~~A~~eG~~Aa~~i~  468 (985)
T TIGR01372       426 DAAIAAFLPGDAVQGCILAGAANGLF-----------GLAAALADGAAAGAAAA  468 (985)
T ss_pred             ccccCceecCCCCCCeEEeeccCCcc-----------CHHHHHHHHHHHHHHHH
Confidence            221     137899999999998653           35679999999998875

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.72  E-value=1.3e-16  Score=158.71  Aligned_cols=193  Identities=24%  Similarity=0.350  Sum_probs=133.8

Q ss_pred             CccCCCCCCCCCCeEEeCCHH-------HHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHC----------------
Q 018416            5 LEEFGLSGSDAENVCYLRDLA-------DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN----------------   61 (356)
Q Consensus         5 p~~~~ipG~~~~~v~~l~~~~-------da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~----------------   61 (356)
                      ++.++|||.+.++|++.+++-       ++..+...+  ..+++++|||+|++|+|+|..|.+.                
T Consensus       127 ~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~--~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~  204 (491)
T PLN02852        127 DRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDL--KSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEA  204 (491)
T ss_pred             CCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcc--cCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHH
Confidence            578899999999999765542       222221111  1579999999999999999999876                


Q ss_pred             ----CC-cEEEEeeCCccCCccCCHHHH-------------------------------------HHHHHHHHh------
Q 018416           62 ----KI-NVTMVFPEAHCMARLFTPKIA-------------------------------------SYYEEYYKS------   93 (356)
Q Consensus        62 ----G~-~Vtlv~~~~~~l~~~~d~~~~-------------------------------------~~~~~~l~~------   93 (356)
                          |. +|+++.|+...-..+...|+.                                     +.+.+...+      
T Consensus       205 l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~  284 (491)
T PLN02852        205 LRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPS  284 (491)
T ss_pred             HhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccC
Confidence                65 599999886422111111211                                     122222222      


Q ss_pred             ---CCCEEEeCCeeeEEEEc--CCCcEEEEEeC-----------------CC--cEEecCeEEEecCCC--CCchh-hhc
Q 018416           94 ---KGVKFVKGTVLSSFDVD--SNGKVVAVNLR-----------------DG--NRLPTDMVVVGIGIR--PNTSL-FEG  146 (356)
Q Consensus        94 ---~GV~v~~~~~v~~i~~~--~~g~v~~v~~~-----------------~g--~~i~~D~vi~a~G~~--p~~~l-~~~  146 (356)
                         ++|.|++...+++|..+  +++++..+++.                 +|  +.++||.||.++|.+  |.+.+ +..
T Consensus       285 ~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~  364 (491)
T PLN02852        285 GGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDH  364 (491)
T ss_pred             CCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCcccc
Confidence               58999999999999742  23567666552                 12  258999999999997  66653 322


Q ss_pred             --ccc-cccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416          147 --QLT-LEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       147 --~l~-~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                        ++. ..+|+|.+|+.++|+.|+|||+|||...+.         ..+..++.+|+.++++|+..
T Consensus       365 ~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~---------gvI~t~~~dA~~ta~~i~~d  420 (491)
T PLN02852        365 KRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPT---------GIIGTNLTCAEETVASIAED  420 (491)
T ss_pred             CcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCC---------CeeeecHhhHHHHHHHHHHH
Confidence              233 367999999888999999999999998654         34567888889999888743

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=6.8e-17  Score=148.88  Aligned_cols=159  Identities=28%  Similarity=0.440  Sum_probs=122.8

Q ss_pred             ccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            6 EEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         6 ~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +.+++||.+   .++|-++-..+.-      |  +++|+|+|||||.+|+|.|..|+-.-..||+++-.+++-.   |  
T Consensus       326 Rn~nvPGE~e~rnKGVayCPHCDGP------L--F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA---D--  392 (520)
T COG3634         326 RNMNVPGEDEYRNKGVAYCPHCDGP------L--FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA---D--  392 (520)
T ss_pred             hcCCCCchHHHhhCCeeeCCCCCCc------c--cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh---H--
Confidence            457888875   3566544332111      1  2789999999999999999999988889999987665332   2  


Q ss_pred             HHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeC---CC--cEEecCeEEEecCCCCCchhhhccccc-ccCcE
Q 018416           83 IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGI  155 (356)
Q Consensus        83 ~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~I  155 (356)
                        +.+++.|+. .+|+++++...+++.++ ..++..+...   +|  ..++-+-|++-+|..||++|++..+++ .+|.|
T Consensus       393 --~VLq~kl~sl~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEI  469 (520)
T COG3634         393 --AVLQDKLRSLPNVTIITNAQTTEVKGD-GDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEI  469 (520)
T ss_pred             --HHHHHHHhcCCCcEEEecceeeEEecC-CceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccE
Confidence              344555554 58999999999999863 3445555543   33  357889999999999999999998887 78999


Q ss_pred             EEecccccCCCCEEEEccccccCcc
Q 018416          156 KVTGRLQSSNSSVYAVGDVAAFPLK  180 (356)
Q Consensus       156 ~vd~~l~ts~~~VyAiGD~~~~~~~  180 (356)
                      .||.+..||.|+|||+|||...+..
T Consensus       470 ivD~~g~TsvpGvFAAGD~T~~~yK  494 (520)
T COG3634         470 IVDARGETNVPGVFAAGDCTTVPYK  494 (520)
T ss_pred             EEecCCCcCCCceeecCcccCCccc
Confidence            9999999999999999999987753

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.65  E-value=1.7e-15  Score=114.43  Aligned_cols=80  Identities=36%  Similarity=0.606  Sum_probs=74.8

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL  120 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~  120 (356)
                      |++|||||++|+|+|..|+++|.+||++++++.+++. +|+++.+.+.+.|+++||++++++.+++++.++++ +. |++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~   77 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG-FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL   77 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence            6899999999999999999999999999999999965 99999999999999999999999999999987777 65 888


Q ss_pred             CCC
Q 018416          121 RDG  123 (356)
Q Consensus       121 ~~g  123 (356)
                      +||
T Consensus        78 ~~g   80 (80)
T PF00070_consen   78 EDG   80 (80)
T ss_dssp             ETS
T ss_pred             ecC
Confidence            886

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.58  E-value=5.4e-15  Score=130.49  Aligned_cols=137  Identities=28%  Similarity=0.399  Sum_probs=97.7

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--ccCCH-----------HHH--H--HHHHHHHhCCCEEEeCCe
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--RLFTP-----------KIA--S--YYEEYYKSKGVKFVKGTV  103 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--~~~d~-----------~~~--~--~~~~~l~~~GV~v~~~~~  103 (356)
                      +|+|||||+.|+.+|..|++.+.+|+++++.+....  ..+..           ...  +  .+.+.+...+++++.+++
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            589999999999999999999999999987653210  00000           011  1  344455778999999999


Q ss_pred             eeEEEEcCCCc-------EEEEEeCCCcEEecCeEEEecCCCCCchh-------------------h-------------
Q 018416          104 LSSFDVDSNGK-------VVAVNLRDGNRLPTDMVVVGIGIRPNTSL-------------------F-------------  144 (356)
Q Consensus       104 v~~i~~~~~g~-------v~~v~~~~g~~i~~D~vi~a~G~~p~~~l-------------------~-------------  144 (356)
                      +.+++. ..+.       +......++.++.+|.+|+|+|.+|+...                   .             
T Consensus        81 v~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG  159 (201)
T PF07992_consen   81 VVSIDP-ESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG  159 (201)
T ss_dssp             EEEEEE-STTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES
T ss_pred             cccccc-cccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccc
Confidence            999986 3332       11224456678999999999997755220                   0             


Q ss_pred             -----hc-cccc-ccCcEEEecccccCCCCEEEEccccccC
Q 018416          145 -----EG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFP  178 (356)
Q Consensus       145 -----~~-~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~  178 (356)
                           +. .+++ ++|+|.||+++||+.|+|||+|||+..+
T Consensus       160 ~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  160 TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY  200 (201)
T ss_dssp             TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred             ccccccccccccccccccccccccccccccccccccccccC
Confidence                 00 1334 5788999999999999999999999865

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1.3e-14  Score=126.59  Aligned_cols=133  Identities=27%  Similarity=0.317  Sum_probs=106.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEE-
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV-  116 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~-  116 (356)
                      +.|..+|||||..++|-|.+|.+.+.+|.+++|++++-.   +..|.   ++.++.-+|++++++.+.+..++ .+.+. 
T Consensus       156 rnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA---s~~Mq---~ra~~npnI~v~~nt~~~ea~gd-~~~l~~  228 (322)
T KOG0404|consen  156 RNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA---SKIMQ---QRAEKNPNIEVLYNTVAVEALGD-GKLLNG  228 (322)
T ss_pred             cCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH---HHHHH---HHHhcCCCeEEEechhhhhhccC-cccccc
Confidence            578899999999999999999999999999999998543   23332   23345678999999988887653 22222 


Q ss_pred             ----EEEeCCCcEEecCeEEEecCCCCCchhhhccccc-ccCcEEEe-cccccCCCCEEEEcccccc
Q 018416          117 ----AVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVT-GRLQSSNSSVYAVGDVAAF  177 (356)
Q Consensus       117 ----~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~I~vd-~~l~ts~~~VyAiGD~~~~  177 (356)
                          .+++.+-..++.+-++.++|..|++.+++..+++ .+|+|++- ..-.||+|++||+||+...
T Consensus       229 l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~  295 (322)
T KOG0404|consen  229 LRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDK  295 (322)
T ss_pred             eEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchH
Confidence                2333334579999999999999999999988887 78899887 5788999999999999764

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.42  E-value=8e-13  Score=130.45  Aligned_cols=193  Identities=27%  Similarity=0.321  Sum_probs=137.1

Q ss_pred             CCCCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhc--------CCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC
Q 018416            2 ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS--------CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   72 (356)
Q Consensus         2 ~~~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~--------~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~   72 (356)
                      +.+|+.+++||.|+++|+.--+.-...... .+..        ..+|+++|||+|.++++++....+.|. +|+.+.+..
T Consensus       218 ~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~-~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~  296 (457)
T COG0493         218 AGKPRPLDIPGEDAKGVAFALDFLTRLNKE-VLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYRED  296 (457)
T ss_pred             ccCCCCCCCCCcCCCcchHHHHHHHHHHHH-HhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecccc
Confidence            458999999999999997322211111110 1110        134999999999999999999999998 677775322


Q ss_pred             cc--CCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC--------C-----------C--cEEecC
Q 018416           73 HC--MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--------D-----------G--NRLPTD  129 (356)
Q Consensus        73 ~~--l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~--------~-----------g--~~i~~D  129 (356)
                      .-  ... .+........+...++|+...+.....++..+++|++..+.+.        +           |  ..+++|
T Consensus       297 ~~~~~~~-~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD  375 (457)
T COG0493         297 RDDETNE-WPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAAD  375 (457)
T ss_pred             ccccCCc-ccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHH
Confidence            11  111 2222344455667788999999999999998888887755331        1           2  257899


Q ss_pred             eEEEecCCCCCchhh---hccccc-ccCcEEEeccc-ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHH
Q 018416          130 MVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRL-QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA  204 (356)
Q Consensus       130 ~vi~a~G~~p~~~l~---~~~l~~-~~g~I~vd~~l-~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~  204 (356)
                      +|+.++|+.++....   ...+.. ..|.|.+|+.+ +||.|++||.||+....          ..+..|+.+||.+|+.
T Consensus       376 ~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~  445 (457)
T COG0493         376 TVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA----------ALVVWAIAEGREAAKA  445 (457)
T ss_pred             HHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccch----------hhhhhHHhhchHHHHh
Confidence            999999988875432   213444 67999999998 99999999999999864          3567899999999987


Q ss_pred             Hc
Q 018416          205 IM  206 (356)
Q Consensus       205 i~  206 (356)
                      |.
T Consensus       446 i~  447 (457)
T COG0493         446 ID  447 (457)
T ss_pred             hh
Confidence            64

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.39  E-value=1.5e-12  Score=116.20  Aligned_cols=165  Identities=26%  Similarity=0.395  Sum_probs=119.4

Q ss_pred             CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHH
Q 018416            9 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE   88 (356)
Q Consensus         9 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~   88 (356)
                      ...|. .+.|..+|+-+.+..++..+.  +.|+|.|+|.|-+++|++.++  .+++|++....+.+...+|||.+++.+.
T Consensus       107 q~E~~-n~~Iv~irDtDsaQllq~kl~--kaK~VlilgnGgia~El~yEl--k~~nv~w~ikd~~IsaTFfdpGaaef~~  181 (334)
T KOG2755|consen  107 QVEGI-NPKIVGIRDTDSAQLLQCKLV--KAKIVLILGNGGIAMELTYEL--KILNVTWKIKDEGISATFFDPGAAEFYD  181 (334)
T ss_pred             eecCC-CceEEEEecCcHHHHHHHHHh--hcceEEEEecCchhHHHHHHh--hcceeEEEecchhhhhcccCccHHHHhH
Confidence            34443 377889999999999999887  689999999999999999988  4789999999999999999999999888


Q ss_pred             HHHHhCC------------CEEEeCCe-----------------eeE------------------E-EEcCCCcEEEEEe
Q 018416           89 EYYKSKG------------VKFVKGTV-----------------LSS------------------F-DVDSNGKVVAVNL  120 (356)
Q Consensus        89 ~~l~~~G------------V~v~~~~~-----------------v~~------------------i-~~~~~g~v~~v~~  120 (356)
                      ..|+..+            ++.+.+..                 ...                  + .+.+...+.....
T Consensus       182 i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~  261 (334)
T KOG2755|consen  182 INLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDK  261 (334)
T ss_pred             hhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccc
Confidence            7772211            11111000                 000                  0 0000011110111


Q ss_pred             CCC--cEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEecccccCCCCEEEEccccccC
Q 018416          121 RDG--NRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFP  178 (356)
Q Consensus       121 ~~g--~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~  178 (356)
                      ..+  ..+.||.+++++|+.||+++.-.. +.. ++|+|+||+.|+|+.|++||+||++...
T Consensus       262 ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~tslpdvFa~gDvctt~  323 (334)
T KOG2755|consen  262 EKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCTTT  323 (334)
T ss_pred             cccccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhhccccccceeeecceeccC
Confidence            111  357899999999999999966544 555 8899999999999999999999998743

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.36  E-value=1.4e-11  Score=120.83  Aligned_cols=160  Identities=18%  Similarity=0.170  Sum_probs=118.3

Q ss_pred             cEEEECCchHHHHHH-HHHH----HCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcE
Q 018416           41 NAVVIGGGYIGMECA-ASLV----INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV  115 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A-~~L~----~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v  115 (356)
                      .=.|++.+.+|+|.+ ..++    +.|++|++++..+..++.   .++.+.+.+.+++.|++++++++|++++.. ++.+
T Consensus       217 ~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V  292 (422)
T PRK05329        217 AEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRV  292 (422)
T ss_pred             CCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEE
Confidence            347899999999999 6665    479999999999988875   378899999999999999999999999863 4555


Q ss_pred             EEEEeCCCc--EEecCeEEEecCCCCCchhhhc-------------------------c-c---ccccCcEEEeccccc-
Q 018416          116 VAVNLRDGN--RLPTDMVVVGIGIRPNTSLFEG-------------------------Q-L---TLEKGGIKVTGRLQS-  163 (356)
Q Consensus       116 ~~v~~~~g~--~i~~D~vi~a~G~~p~~~l~~~-------------------------~-l---~~~~g~I~vd~~l~t-  163 (356)
                      ..+...+++  .+++|.+++|+|..+...|..+                         . +   ....=+|.+|++++. 
T Consensus       293 ~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~  372 (422)
T PRK05329        293 TAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPL  372 (422)
T ss_pred             EEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcc
Confidence            555555553  5899999999998766554210                         0 0   011235677766664 


Q ss_pred             ------CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416          164 ------SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       164 ------s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                            ..+|+||+|++...+++..-.    .....|+..|..|+++|...
T Consensus       373 ~~~g~~~~~nl~a~G~vl~g~d~~~~~----~g~Gva~~ta~~a~~~~~~~  419 (422)
T PRK05329        373 DSQGGPVIENLYAAGAVLGGYDPIREG----CGSGVALATALHAAEQIAEE  419 (422)
T ss_pred             cCCCCeeccceEEeeehhcCCchHHhC----CCchhHHHHHHHHHHHHHHh
Confidence                  579999999999988764210    12346777888888888643

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.18  E-value=1.8e-10  Score=114.73  Aligned_cols=167  Identities=11%  Similarity=0.081  Sum_probs=113.1

Q ss_pred             CCccCCCCCCC-CCCe-EEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCH
Q 018416            4 KLEEFGLSGSD-AENV-CYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP   81 (356)
Q Consensus         4 ~p~~~~ipG~~-~~~v-~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~   81 (356)
                      +|+.+++||.+ .++. ++..++.+...       .++|+|+|||+|.+|+|+|..|++.+.+|+++.|++.+...    
T Consensus       174 ~P~~P~ipG~~~f~G~~iHs~~yr~~~~-------~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~----  242 (461)
T PLN02172        174 EPNVAHIPGIKSWPGKQIHSHNYRVPDP-------FKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTY----  242 (461)
T ss_pred             CCcCCCCCCcccCCceEEEecccCCccc-------cCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccccc----
Confidence            68889999974 3442 22222222221       26899999999999999999999999999999997643210    


Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcccccccCcEEEecc-
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR-  160 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~~~g~I~vd~~-  160 (356)
                             +.+.....++..+..|..+..  ++   .|++.||+.+++|.||+|+|.+|+..+++.     .+.|.+|+. 
T Consensus       243 -------~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~-----~~~i~v~~~~  305 (461)
T PLN02172        243 -------EKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLET-----NGYMRIDENR  305 (461)
T ss_pred             -------ccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCc-----ccceeeCCCc
Confidence                   111122344555666766643  34   377899999999999999999999998764     233444421 


Q ss_pred             -----ccc---C-CCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          161 -----LQS---S-NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       161 -----l~t---s-~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                           .++   . .|+++.+|=....           .....+..|++.+|..+.|..
T Consensus       306 v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~  352 (461)
T PLN02172        306 VEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRV  352 (461)
T ss_pred             chhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCC
Confidence                 121   3 4899999955322           123456779999999888764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.11  E-value=1.1e-09  Score=102.41  Aligned_cols=99  Identities=14%  Similarity=0.243  Sum_probs=80.5

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc---c--------CCc----cCCHHHHHHHHHHHHhCCCEEEeCCeee
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH---C--------MAR----LFTPKIASYYEEYYKSKGVKFVKGTVLS  105 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~---~--------l~~----~~d~~~~~~~~~~l~~~GV~v~~~~~v~  105 (356)
                      +++|||||+.|+++|..|+++|.+|+++++.+.   +        .+.    ..+.++...+.+.+++.|+++++ ++++
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            689999999999999999999999999998651   1        121    12368888999999999999998 8899


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          106 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       106 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +++..+ +. ..+++.+++++.+|.+|+|+|.+|+..
T Consensus        81 ~v~~~~-~~-~~v~~~~~~~~~~d~liiAtG~~~~~~  115 (300)
T TIGR01292        81 KVDLSD-RP-FKVKTGDGKEYTAKAVIIATGASARKL  115 (300)
T ss_pred             EEEecC-Ce-eEEEeCCCCEEEeCEEEECCCCCcccC
Confidence            988632 22 356677888999999999999988654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.10  E-value=2.8e-09  Score=112.37  Aligned_cols=169  Identities=21%  Similarity=0.209  Sum_probs=107.7

Q ss_pred             CCCccCCCCCCCCCCeEEeCCHHHHHHHHHHH-----h-cCCCCcEEEECCchHHHHHHHHHHH----------------
Q 018416            3 LKLEEFGLSGSDAENVCYLRDLADANRLVNVM-----K-SCSGGNAVVIGGGYIGMECAASLVI----------------   60 (356)
Q Consensus         3 ~~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l-----~-~~~~~~vvVvGgG~iGlE~A~~L~~----------------   60 (356)
                      .+|+.+++||.+.++|++..++-...+.....     . ...+++|||||||++|+|+|....+                
T Consensus       508 ~kpr~L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~  587 (1028)
T PRK06567        508 GQPKVLDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEK  587 (1028)
T ss_pred             CCCCCCCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhh
Confidence            47999999999999998543321111110000     0 0135899999999999999984332                


Q ss_pred             -----------------------------------CCCcEEEEeeCCcc-CCcc-C-CHHHHHHHHHHHHhCCCEEEeCC
Q 018416           61 -----------------------------------NKINVTMVFPEAHC-MARL-F-TPKIASYYEEYYKSKGVKFVKGT  102 (356)
Q Consensus        61 -----------------------------------~G~~Vtlv~~~~~~-l~~~-~-d~~~~~~~~~~l~~~GV~v~~~~  102 (356)
                                                         .|. ||++.|+..- +|.. + .+|+    + ...+.||+++.+.
T Consensus       588 ~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~~~eEv----~-~A~eEGV~f~~~~  661 (1028)
T PRK06567        588 DLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKLNHEEL----I-YALALGVDFKENM  661 (1028)
T ss_pred             hcccccHHHHHHHHHHHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCCCCCCHHHH----H-HHHHcCcEEEecC
Confidence                                               232 8888776532 2210 1 1222    2 2345699999999


Q ss_pred             eeeEEEEcCCCcEEEEEeC--------------C-C---------------cEEecCeEEEecCCCCCchhhhccccccc
Q 018416          103 VLSSFDVDSNGKVVAVNLR--------------D-G---------------NRLPTDMVVVGIGIRPNTSLFEGQLTLEK  152 (356)
Q Consensus       103 ~v~~i~~~~~g~v~~v~~~--------------~-g---------------~~i~~D~vi~a~G~~p~~~l~~~~l~~~~  152 (356)
                      .+.++..+++|++..+++.              + +               .+++||.||+|+|..||+.+...      
T Consensus       662 ~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~~------  735 (1028)
T PRK06567        662 QPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDED------  735 (1028)
T ss_pred             CcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccccc------
Confidence            9999987666777765442              1 1               46899999999999999987421      


Q ss_pred             CcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       153 g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                           +..+-++.+++|+-                  .+-.|+.+|+.++.+|.
T Consensus       736 -----~~s~~~d~~~~f~G------------------tvv~A~as~k~~~~~i~  766 (1028)
T PRK06567        736 -----KYSYFGDCNPKYSG------------------SVVKALASSKEGYDAIN  766 (1028)
T ss_pred             -----ccccccCCCCcccc------------------HHHHHHHHHHhHHHHHH
Confidence                 00122233444432                  35578889999988883

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.06  E-value=2.6e-10  Score=118.25  Aligned_cols=190  Identities=18%  Similarity=0.266  Sum_probs=111.2

Q ss_pred             CCCccCCCCCCCCCCeEEeCCHHHHHHHHHHHh--------cCCCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCc
Q 018416            3 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMK--------SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH   73 (356)
Q Consensus         3 ~~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~--------~~~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~   73 (356)
                      -.|+.+++||.|+++|+.--.+-... -+..++        +.++|+|+|||||..|-+|-..-.|+|++ |.-++--|+
T Consensus      1881 t~prdlpv~grd~kgv~fame~l~~n-tk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~ 1959 (2142)
T KOG0399|consen 1881 TTPRDLPVPGRDLKGVHFAMEFLEKN-TKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQ 1959 (2142)
T ss_pred             CCCcCCCCCCccccccHHHHHHHHHh-HHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCC
Confidence            47999999999999996321111111 111221        12689999999999999999999999985 444554443


Q ss_pred             cC---------C---ccCCHHHHHHHHHHHHhCCCEEEeCC-eeeEEEE------------------cCCCcEEEEEeCC
Q 018416           74 CM---------A---RLFTPKIASYYEEYYKSKGVKFVKGT-VLSSFDV------------------DSNGKVVAVNLRD  122 (356)
Q Consensus        74 ~l---------~---~~~d~~~~~~~~~~l~~~GV~v~~~~-~v~~i~~------------------~~~g~v~~v~~~~  122 (356)
                      +-         |   +.|--+....-.+.  ..|-+.++-. -.+++.+                  ++.|+..-++..+
T Consensus      1960 pp~~ra~~npwpqwprvfrvdygh~e~~~--~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~ 2037 (2142)
T KOG0399|consen 1960 PPPERAPDNPWPQWPRVFRVDYGHAEAKE--HYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINN 2037 (2142)
T ss_pred             CCcccCCCCCCccCceEEEeecchHHHHH--HhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCC
Confidence            32         1   11111111111111  1121111111 1122333                  3334333333333


Q ss_pred             C-cEEecCeEEEecCCCC-Cchhhhcc-ccc-ccCcEEE-ecccccCCCCEEEEccccccCccccCcccccccHHHHHHH
Q 018416          123 G-NRLPTDMVVVGIGIRP-NTSLFEGQ-LTL-EKGGIKV-TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKS  197 (356)
Q Consensus       123 g-~~i~~D~vi~a~G~~p-~~~l~~~~-l~~-~~g~I~v-d~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~  197 (356)
                      . +.++||+||++.|+.. .....++. ++. .++.|.. ++.+.|+++.|||+|||-.....          +..|+++
T Consensus      2038 see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqsl----------vvwai~e 2107 (2142)
T KOG0399|consen 2038 SEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSL----------VVWAIQE 2107 (2142)
T ss_pred             cceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceE----------EEEEehh
Confidence            3 4589999999999764 44444433 554 4555654 46688999999999999886543          3357778


Q ss_pred             HHHHHHHH
Q 018416          198 AKHAVAAI  205 (356)
Q Consensus       198 g~~aa~~i  205 (356)
                      ||.+|+.+
T Consensus      2108 grq~a~~v 2115 (2142)
T KOG0399|consen 2108 GRQAARQV 2115 (2142)
T ss_pred             hhHHHHHH
Confidence            88888765

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.94  E-value=5.3e-08  Score=89.81  Aligned_cols=165  Identities=18%  Similarity=0.183  Sum_probs=108.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------c--------------------------C-CH
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------L--------------------------F-TP   81 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------~--------------------------~-d~   81 (356)
                      ...|+|||+|+.|+-+|..|++.|.+|+++++.+.+...          .                          . ..
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~  104 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV  104 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence            468999999999999999999999999999987654210          0                          1 12


Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-----------CCcEEecCeEEEecCCCCCch--hhhccc
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNTS--LFEGQL  148 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~--l~~~~l  148 (356)
                      ++...+.+..++.|++++.++.+.++..++++++..+...           +..++.++.||.|+|......  +.+...
T Consensus       105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~  184 (257)
T PRK04176        105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP  184 (257)
T ss_pred             HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence            4445566677788999999999999876444466555432           224799999999999654432  111100


Q ss_pred             ----cc--------ccC-cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          149 ----TL--------EKG-GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       149 ----~~--------~~g-~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                          ..        +.+ ...|+.+-+ -.|++|++|-++...   +|.++.=|.-..=.-.|+.||+.++.
T Consensus       185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~---~~~~rmg~~fg~m~~sg~~~a~~~~~  252 (257)
T PRK04176        185 ELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAV---HGLPRMGPIFGGMLLSGKKVAELILE  252 (257)
T ss_pred             CcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhh---cCCCccCchhHhHHHhHHHHHHHHHH
Confidence                00        011 111221111 379999999988753   25555444444445678888887764

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.92  E-value=1.6e-08  Score=96.22  Aligned_cols=100  Identities=19%  Similarity=0.283  Sum_probs=82.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------------   77 (356)
                      ..|+|||||+.|+-+|..++++|.+|+|+++.+.+..+                                          
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d   83 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED   83 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence            57999999999999999999999999999998654211                                          


Q ss_pred             -------------------cC-----CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEE
Q 018416           78 -------------------LF-----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  133 (356)
Q Consensus        78 -------------------~~-----d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  133 (356)
                                         .|     ..++.+.+..++++.||+++++++|.+++.++  ....+.+.+|+++.||.+|+
T Consensus        84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081          84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEE
Confidence                               01     13467778889999999999999999998743  33678889999999999999


Q ss_pred             ecC--CCCCc
Q 018416          134 GIG--IRPNT  141 (356)
Q Consensus       134 a~G--~~p~~  141 (356)
                      |+|  .-|.+
T Consensus       162 AtGG~S~P~l  171 (408)
T COG2081         162 ATGGKSWPKL  171 (408)
T ss_pred             ecCCcCCCCC
Confidence            999  44533

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.89  E-value=1.6e-07  Score=86.34  Aligned_cols=166  Identities=17%  Similarity=0.185  Sum_probs=109.2

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC----------cc---------------------------CCH
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------RL---------------------------FTP   81 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~----------~~---------------------------~d~   81 (356)
                      .-.|+|||+|+.|+-+|..|++.|.+|+++|+.+.+..          ..                           ...
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~  100 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA  100 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence            46899999999999999999999999999999865420          00                           012


Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC-cEEEEEeC-----------CCcEEecCeEEEecCCCCC-chhhhcc-
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLR-----------DGNRLPTDMVVVGIGIRPN-TSLFEGQ-  147 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g-~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~-~~l~~~~-  147 (356)
                      ++.+.+.+...+.|++++.++.++++..++++ ++..+.+.           +..+++++.||.|+|.... ..++... 
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~  180 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI  180 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence            34555666777889999999999998763332 56666553           2247899999999996543 3333221 


Q ss_pred             -ccc-c-----cCcEEEe--cc---ccc--CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          148 -LTL-E-----KGGIKVT--GR---LQS--SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       148 -l~~-~-----~g~I~vd--~~---l~t--s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                       +.. .     .+...++  |.   -.|  -+|++|++|-.+...   .|.+++=|.-..=.-.|+.||+.++.
T Consensus       181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~---~~~~rmgp~fg~m~~sg~~~a~~~~~  251 (254)
T TIGR00292       181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAV---HGLPRMGPIFGGMLLSGKHVAEQILE  251 (254)
T ss_pred             CcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhh---cCCCCcCchHHHHHHhhHHHHHHHHH
Confidence             111 0     0111111  00   023  489999999988743   35555444444445678888887753

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.82  E-value=1e-07  Score=96.63  Aligned_cols=101  Identities=24%  Similarity=0.324  Sum_probs=81.6

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC--Ccc-----------CCccCCHHHHHHHHHHHHhCCCEEEeCCeee
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHC-----------MARLFTPKIASYYEEYYKSKGVKFVKGTVLS  105 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~--~~~-----------l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~  105 (356)
                      ..+++|||||+.|+.+|..+++.|.+|++++..  .++           .+....+++.+.+.+.+++.|++++++++++
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            458999999999999999999999999999753  111           0111356788899999999999999999999


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          106 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       106 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      ++...+ + ...+.+.+|+++.+|.+|+|+|.+|..
T Consensus       291 ~I~~~~-~-~~~V~~~~g~~i~a~~vViAtG~~~r~  324 (517)
T PRK15317        291 KLEPAA-G-LIEVELANGAVLKAKTVILATGARWRN  324 (517)
T ss_pred             EEEecC-C-eEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            997632 2 245677888899999999999998754

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.82  E-value=5.6e-08  Score=98.52  Aligned_cols=102  Identities=21%  Similarity=0.312  Sum_probs=81.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC--CccC-----------CccCCHHHHHHHHHHHHhCCCEEEeCCee
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~--~~~l-----------~~~~d~~~~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      ...+|+|||||+.|+.+|..|++.|.+|++++..  .++.           +....+++.+.+.+.+++.||+++.+++|
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V  290 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA  290 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence            4578999999999999999999999999999642  1111           11135678888889999999999999999


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      +++..++ + ...+.+++|+.+.+|.+++|+|.+|..
T Consensus       291 ~~I~~~~-~-~~~v~~~~g~~i~~d~lIlAtGa~~~~  325 (515)
T TIGR03140       291 KKIETED-G-LIVVTLESGEVLKAKSVIVATGARWRK  325 (515)
T ss_pred             EEEEecC-C-eEEEEECCCCEEEeCEEEECCCCCcCC
Confidence            9997632 2 235667788899999999999988753

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.80  E-value=3.8e-08  Score=96.45  Aligned_cols=100  Identities=15%  Similarity=0.272  Sum_probs=74.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCCccC-C-ccCCHHHH---------HHHHHHHHhCCCEEEeCCee
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCM-A-RLFTPKIA---------SYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~~~l-~-~~~d~~~~---------~~~~~~l~~~GV~v~~~~~v  104 (356)
                      ..+++||||||+.|+++|..|+++|.  +||++++.++.. . ..+.....         ..-.+.+++.||+++.++.+
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V   81 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTI   81 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEE
Confidence            35789999999999999999999886  799998876531 0 01222111         01134567889999999999


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      +.++. + .  ..+.+++|+++.+|.+|+|||.+|..
T Consensus        82 ~~id~-~-~--~~v~~~~g~~~~yd~LViATGs~~~~  114 (396)
T PRK09754         82 KTLGR-D-T--RELVLTNGESWHWDQLFIATGAAARP  114 (396)
T ss_pred             EEEEC-C-C--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence            99975 2 2  24667889999999999999999854

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.78  E-value=4.6e-08  Score=97.19  Aligned_cols=101  Identities=19%  Similarity=0.302  Sum_probs=73.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCcc------CCcc----CC--HHHHHHHHHHHHhCCCEEEeCCeee
Q 018416           40 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC------MARL----FT--PKIASYYEEYYKSKGVKFVKGTVLS  105 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~------l~~~----~d--~~~~~~~~~~l~~~GV~v~~~~~v~  105 (356)
                      +++||||||+.|+++|..|++++  .+|||+++.+.+      ++..    .+  .++.....+.+++.||+++.++.++
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            47999999999999999999985  489999998763      1111    11  1233344566888999999999999


Q ss_pred             EEEEcCCCcEEEEEe-CCCcEEe--cCeEEEecCCCCCch
Q 018416          106 SFDVDSNGKVVAVNL-RDGNRLP--TDMVVVGIGIRPNTS  142 (356)
Q Consensus       106 ~i~~~~~g~v~~v~~-~~g~~i~--~D~vi~a~G~~p~~~  142 (356)
                      +++.+ +.. ..+.. .++++++  +|.+|+|+|.+|+..
T Consensus        81 ~id~~-~~~-v~~~~~~~~~~~~~~yd~lviAtG~~~~~~  118 (444)
T PRK09564         81 KVDAK-NKT-ITVKNLKTGSIFNDTYDKLMIATGARPIIP  118 (444)
T ss_pred             EEECC-CCE-EEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence            99762 332 23332 2356666  999999999998754

>PRK06847 hypothetical protein; Provisional

Probab=98.76  E-value=1.2e-07  Score=91.78  Aligned_cols=103  Identities=23%  Similarity=0.365  Sum_probs=80.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------------------
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------   77 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------------   77 (356)
                      +.++|+|||||+.|+-+|..|++.|++|+++|+.+.+-..                                        
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g   82 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG   82 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence            3578999999999999999999999999999987531000                                        


Q ss_pred             ----cC-----------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecC
Q 018416           78 ----LF-----------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  136 (356)
Q Consensus        78 ----~~-----------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G  136 (356)
                          .+                 .+++.+.+.+.+++.|++++.++++++++.++++  ..+.+.+|+++.+|.||.|.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG  160 (375)
T PRK06847         83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADG  160 (375)
T ss_pred             CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcC
Confidence                00                 0344566677777789999999999999863333  457788899999999999999


Q ss_pred             CCCCch
Q 018416          137 IRPNTS  142 (356)
Q Consensus       137 ~~p~~~  142 (356)
                      ..+...
T Consensus       161 ~~s~~r  166 (375)
T PRK06847        161 LYSKVR  166 (375)
T ss_pred             CCcchh
Confidence            877653

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=98.75  E-value=1.8e-07  Score=86.30  Aligned_cols=193  Identities=16%  Similarity=0.216  Sum_probs=133.8

Q ss_pred             CCCCccCCCCCC----CCCCeEEeCCHHHHHHHHHHHhcCCCCcEEE---------ECCchHHHHHHHH-HHHCCC--cE
Q 018416            2 ALKLEEFGLSGS----DAENVCYLRDLADANRLVNVMKSCSGGNAVV---------IGGGYIGMECAAS-LVINKI--NV   65 (356)
Q Consensus         2 ~~~p~~~~ipG~----~~~~v~~l~~~~da~~i~~~l~~~~~~~vvV---------vGgG~iGlE~A~~-L~~~G~--~V   65 (356)
                      -|+.+.-.|+|.    |.|+|.+..+..-+++..+.+...+..+++-         -|+---.+-+++. ++++|.  ++
T Consensus       142 Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a  221 (446)
T KOG3851|consen  142 GIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNA  221 (446)
T ss_pred             eceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccc
Confidence            467777778874    6789999999999999888887654444322         2444444445544 555665  24


Q ss_pred             EEE--eeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-C--cEEecCeEEEecCCCCC
Q 018416           66 TMV--FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-G--NRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        66 tlv--~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-g--~~i~~D~vi~a~G~~p~  140 (356)
                      .++  ..-+.++.   -...++.+++..++++|++.....+.++..++...+.+ .+.+ |  ++++++++-+....++.
T Consensus       222 ~iiy~Tsl~~iFg---Vk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe-~L~kPG~t~ei~yslLHv~Ppms~p  297 (446)
T KOG3851|consen  222 NIIYNTSLPTIFG---VKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFE-NLDKPGVTEEIEYSLLHVTPPMSTP  297 (446)
T ss_pred             cEEEecCccceec---HHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHH-hcCCCCceeEEeeeeeeccCCCCCh
Confidence            443  33344332   25677888999999999999999999987633221111 1222 4  47899999999999888


Q ss_pred             chhhhcccccccCcEEEec-cccc-CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          141 TSLFEGQLTLEKGGIKVTG-RLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       141 ~~l~~~~l~~~~g~I~vd~-~l~t-s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      ..+....+....|++.||. .+|. ..||||+||||...|..        ..++....|...+-.|+.
T Consensus       298 e~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~Pns--------KTaAAvaaq~~vv~~nl~  357 (446)
T KOG3851|consen  298 EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNS--------KTAAAVAAQSPVVDKNLT  357 (446)
T ss_pred             hhhhcCcccCcccceecChhhhccccCCCceeeccccCCCch--------hhHHHHHhcCchhhhhHH
Confidence            7777776777889999995 5776 79999999999998865        334444456677777765

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.74  E-value=6.4e-08  Score=94.87  Aligned_cols=99  Identities=20%  Similarity=0.325  Sum_probs=67.5

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------c-------C----
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------L-------F----   79 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------~-------~----   79 (356)
                      +|+|||||+.|+-+|..+++.|.+|+|+|+.+++..+                              +       +    
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d   81 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED   81 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence            5899999999999999999999999999998544111                              0       0    


Q ss_pred             --------------------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEE
Q 018416           80 --------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  133 (356)
Q Consensus        80 --------------------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  133 (356)
                                                ..++.+.+.+.+++.||+++++++|.+++. +++.+..|++++++++.+|.||+
T Consensus        82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen   82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEEEE
T ss_pred             HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEEEE
Confidence                                      123556678888999999999999999987 34555678887788999999999


Q ss_pred             ecCCCCC
Q 018416          134 GIGIRPN  140 (356)
Q Consensus       134 a~G~~p~  140 (356)
                      |+|-.+.
T Consensus       161 AtGG~S~  167 (409)
T PF03486_consen  161 ATGGKSY  167 (409)
T ss_dssp             ----SSS
T ss_pred             ecCCCCc
Confidence            9996543

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.74  E-value=4.5e-08  Score=99.14  Aligned_cols=181  Identities=16%  Similarity=0.248  Sum_probs=92.8

Q ss_pred             CCccCC--CCCCCC--CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc-CCcc
Q 018416            4 KLEEFG--LSGSDA--ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-MARL   78 (356)
Q Consensus         4 ~p~~~~--ipG~~~--~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~-l~~~   78 (356)
                      +|+.+.  +||.+.  ..+++-++..+.+.       .++|+|+|||+|.+|+++|..|++...+|++..|+... +++.
T Consensus       151 ~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~-------f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~  223 (531)
T PF00743_consen  151 KPNIPEPSFPGLEKFKGEIIHSKDYRDPEP-------FKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRY  223 (531)
T ss_dssp             CESB-----CTGGGHCSEEEEGGG--TGGG-------GTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---------
T ss_pred             CCCCChhhhhhhhcCCeeEEccccCcChhh-------cCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccc
Confidence            566663  888652  23454444544433       37999999999999999999999999999998887542 2221


Q ss_pred             C----------------------CHHHHHHH-HHHHHh------CC--------------------------CEEEeCCe
Q 018416           79 F----------------------TPKIASYY-EEYYKS------KG--------------------------VKFVKGTV  103 (356)
Q Consensus        79 ~----------------------d~~~~~~~-~~~l~~------~G--------------------------V~v~~~~~  103 (356)
                      .                      +..+...+ ++.+.+      .|                          |++.  ..
T Consensus       224 ~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~  301 (531)
T PF00743_consen  224 WDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PD  301 (531)
T ss_dssp             ---------------------------------------------------------------------------E--E-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cc
Confidence            1                      11111111 111110      11                          1111  12


Q ss_pred             eeEEEEcCCCcEEEEEeCCCcEE-ecCeEEEecCCCCCchhhhcccc-cccCcEEEecccc---cCCCCEEEEccccccC
Q 018416          104 LSSFDVDSNGKVVAVNLRDGNRL-PTDMVVVGIGIRPNTSLFEGQLT-LEKGGIKVTGRLQ---SSNSSVYAVGDVAAFP  178 (356)
Q Consensus       104 v~~i~~~~~g~v~~v~~~~g~~i-~~D~vi~a~G~~p~~~l~~~~l~-~~~g~I~vd~~l~---ts~~~VyAiGD~~~~~  178 (356)
                      |.++.+      .++.+.||+++ ++|.||+|||.+....++++.+. ..++.+..-.++-   -..|.+..+|=+-.. 
T Consensus       302 I~~~~~------~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~-  374 (531)
T PF00743_consen  302 IKRFTE------NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF-  374 (531)
T ss_dssp             EEEE-S------SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS-
T ss_pred             cccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            333321      14678899875 69999999999988888876533 3344333333221   235889999976421 


Q ss_pred             ccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          179 LKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       179 ~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      .         +....+..|++.++.-+.|..
T Consensus       375 g---------~~fp~~ElQArw~a~v~sG~~  396 (531)
T PF00743_consen  375 G---------SIFPIFELQARWAARVFSGRV  396 (531)
T ss_dssp             S----------HHHHHHHHHHHHHHHHTTSS
T ss_pred             c---------ccccccccccccccccccccc
Confidence            1         223457789999999887754

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.72  E-value=3.5e-07  Score=91.33  Aligned_cols=136  Identities=21%  Similarity=0.273  Sum_probs=89.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc---------------------------------------
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL---------------------------------------   78 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~---------------------------------------   78 (356)
                      ..++|+|||+|+.|+-+|..|.+.|.+|+++|+.+.+...+                                       
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            46899999999999999999999999999999875431110                                       


Q ss_pred             ----C----------------CHHHHHHHHHHHHhCCCE--EEeCCeeeEEEEcCCCcEEEEEeCC--Cc--EEecCeEE
Q 018416           79 ----F----------------TPKIASYYEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRD--GN--RLPTDMVV  132 (356)
Q Consensus        79 ----~----------------d~~~~~~~~~~l~~~GV~--v~~~~~v~~i~~~~~g~v~~v~~~~--g~--~i~~D~vi  132 (356)
                          +                ..++.+.+++..+..|++  ++++++|++++.. ++.. .|++.+  +.  +..+|.||
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~~w-~V~~~~~~~~~~~~~~d~VI  166 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DGKW-RVQSKNSGGFSKDEIFDAVV  166 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec-CCeE-EEEEEcCCCceEEEEcCEEE
Confidence                0                045777778888888988  8899999999873 3332 344432  22  45799999


Q ss_pred             EecC--CCCCchhhhcccccccCcEEEeccccc----CCCCEEEEccccc
Q 018416          133 VGIG--IRPNTSLFEGQLTLEKGGIKVTGRLQS----SNSSVYAVGDVAA  176 (356)
Q Consensus       133 ~a~G--~~p~~~l~~~~l~~~~g~I~vd~~l~t----s~~~VyAiGD~~~  176 (356)
                      +|+|  ..|+..-....-......+-... +++    ....|..+|-..+
T Consensus       167 vAtG~~~~P~~P~ipG~~~f~G~~iHs~~-yr~~~~~~gk~VvVVG~G~S  215 (461)
T PLN02172        167 VCNGHYTEPNVAHIPGIKSWPGKQIHSHN-YRVPDPFKNEVVVVIGNFAS  215 (461)
T ss_pred             EeccCCCCCcCCCCCCcccCCceEEEecc-cCCccccCCCEEEEECCCcC
Confidence            9999  46664432221111211122222 222    3467888885543

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.71  E-value=1.2e-07  Score=83.71  Aligned_cols=98  Identities=29%  Similarity=0.454  Sum_probs=67.9

Q ss_pred             EEECCchHHHHHHHHHHHCCCc-EEEEeeCCccCC--------------cc------------C----------------
Q 018416           43 VVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMA--------------RL------------F----------------   79 (356)
Q Consensus        43 vVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~~l~--------------~~------------~----------------   79 (356)
                      +|||+|+.|+-+|..|.+.|.+ |+++|+.+.+..              ..            +                
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999999 999999854310              00            0                


Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC--CCCch
Q 018416           80 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI--RPNTS  142 (356)
Q Consensus        80 d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~--~p~~~  142 (356)
                      -+++.+++++..++.+++++++++|++++.++++  -.+++.+++++.||.||+|+|.  .|+..
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p  143 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP  143 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence            1245577788888899999999999999986555  4688888889999999999996  55543

...

>PRK07236 hypothetical protein; Provisional

Probab=98.68  E-value=1.6e-07  Score=91.68  Aligned_cols=102  Identities=25%  Similarity=0.359  Sum_probs=75.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----cCCHHHHHHHHH-----------------------
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----LFTPKIASYYEE-----------------------   89 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----~~d~~~~~~~~~-----------------------   89 (356)
                      ...+|+|||||+.|+.+|..|++.|++|+|+|+.+.....     .+.+...+.+.+                       
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g   84 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG   84 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence            4679999999999999999999999999999998754321     123333333222                       


Q ss_pred             --------------------HHHh--CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416           90 --------------------YYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        90 --------------------~l~~--~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                                          .|.+  .+++++.++++++++.++++  ..+.+++|+++.+|+||.|-|.....
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vIgADG~~S~v  156 (386)
T PRK07236         85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR--VTARFADGRRETADLLVGADGGRSTV  156 (386)
T ss_pred             CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCchH
Confidence                                1111  13568999999999864333  45788999999999999999976654

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.63  E-value=1.2e-07  Score=102.02  Aligned_cols=93  Identities=23%  Similarity=0.203  Sum_probs=74.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------c-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+|+|+|||+|+.|+.+|..|+++|++||++++.+.+..       . .++.++.+...+.+++.||++++++.+..   
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~---  381 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK---  381 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence            579999999999999999999999999999999875432       1 15677777778889999999999875421   


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCC-CC
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR-PN  140 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~-p~  140 (356)
                             .+.+++.....+|.|++|+|.. |.
T Consensus       382 -------dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        382 -------TATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             -------EEeHHHhccccCCEEEEeCCCCCCC
Confidence                   2445555566799999999984 54

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.63  E-value=1.1e-07  Score=91.73  Aligned_cols=100  Identities=18%  Similarity=0.150  Sum_probs=70.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+++++|||+|++|+++|..|++.|.+|+++++.+.+...        .++.+......+.+.+.|++++.++.+..+..
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~   96 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP   96 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence            5789999999999999999999999999999998776421        12334444455667778999999988765432


Q ss_pred             ---cCCCcEE--EEEeCCCcEEecCeEEEecCCC
Q 018416          110 ---DSNGKVV--AVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus       110 ---~~~g~v~--~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                         ..++...  .+.. ++..+.+|.||+|+|..
T Consensus        97 ~~~~~~~~~~~~~~~~-~~~~~~~d~lviAtGs~  129 (352)
T PRK12770         97 LHEEEGDEFVERIVSL-EELVKKYDAVLIATGTW  129 (352)
T ss_pred             cccccccccccccCCH-HHHHhhCCEEEEEeCCC
Confidence               0111110  0111 12247899999999984

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=98.61  E-value=2.5e-08  Score=79.76  Aligned_cols=82  Identities=21%  Similarity=0.190  Sum_probs=59.3

Q ss_pred             EEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHH
Q 018416          221 YSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKA  279 (356)
Q Consensus       221 ~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~a  279 (356)
                      +..++++.++++|+++.++...+                  ..+..+|.|+..  ++|+|+|+|++|+++.+ ++.++.+
T Consensus         3 ~~vft~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~a   82 (110)
T PF02852_consen    3 TVVFTDPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINELALA   82 (110)
T ss_dssp             EEEESSSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHH
T ss_pred             EEEECCCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHHHHHH
Confidence            45678899999999876432111                  112234666654  58999999999988665 5788999


Q ss_pred             HHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          280 TRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       280 i~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      |++++|++++.+ .   +.|+|+|++.
T Consensus        83 i~~~~t~~~l~~-~---~~~~Pt~se~  105 (110)
T PF02852_consen   83 IQNGLTVEDLAD-D---IFYHPTFSEA  105 (110)
T ss_dssp             HHTTSBHHHHHT-S---BSSSTSTGHH
T ss_pred             HHcCCCHHHHhC-C---eeeCCChhHH
Confidence            999999997555 3   5899999864

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.60  E-value=3.1e-07  Score=90.91  Aligned_cols=102  Identities=25%  Similarity=0.363  Sum_probs=73.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccC---------C-HHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF---------T-PKIASYYEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~---------d-~~~~~~~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      ..+++||||||+.|+.+|..|.+.+.+||||++.+...-..+         + .++...+.+.+++.+++++. .+|++|
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~I   87 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDV   87 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEEEE
Confidence            457999999999999999999877889999999876421111         1 22334456667778898875 578899


Q ss_pred             EEcCCCcEEEEEe--------CCCcEEecCeEEEecCCCCCch
Q 018416          108 DVDSNGKVVAVNL--------RDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       108 ~~~~~g~v~~v~~--------~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +. ++..+ .+..        .+|+++++|.+|+|+|.+|+..
T Consensus        88 d~-~~~~v-~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~  128 (424)
T PTZ00318         88 DF-EEKRV-KCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF  128 (424)
T ss_pred             Ec-CCCEE-EEecccccccccCCceEecCCEEEECCCcccCCC
Confidence            75 23322 2211        4567899999999999987643

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.60  E-value=1.7e-07  Score=99.43  Aligned_cols=97  Identities=21%  Similarity=0.384  Sum_probs=74.8

Q ss_pred             EEEECCchHHHHHHHHHHHC---CCcEEEEeeCCccC------CccCC-----HHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416           42 AVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCM------ARLFT-----PKIASYYEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        42 vvVvGgG~iGlE~A~~L~~~---G~~Vtlv~~~~~~l------~~~~d-----~~~~~~~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      +||||+|+.|+.+|..|+++   +.+|||+++.+++.      +.++.     +++.....+.++++||++++++.|+++
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            68999999999999999876   46899999988742      11111     222223456788899999999999999


Q ss_pred             EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +..  .  ..|.+.+|+++++|.+|+|+|.+|+..
T Consensus        81 d~~--~--k~V~~~~g~~~~yD~LVlATGs~p~~p  111 (785)
T TIGR02374        81 DTD--Q--KQVITDAGRTLSYDKLILATGSYPFIL  111 (785)
T ss_pred             ECC--C--CEEEECCCcEeeCCEEEECCCCCcCCC
Confidence            752  2  246678899999999999999988754

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.60  E-value=2.5e-07  Score=89.45  Aligned_cols=97  Identities=21%  Similarity=0.318  Sum_probs=73.2

Q ss_pred             cEEEECCchHHHHHHHHHHHC---CCcEEEEeeCCccC-CccC---------CHHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416           41 NAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCM-ARLF---------TPKIASYYEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~---G~~Vtlv~~~~~~l-~~~~---------d~~~~~~~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      +|||||||+.|+.+|..|+++   +.+|||+++.+... .+.+         ..++.....+.+++.||+++.+ .++++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            589999999999999999644   68999999887532 1111         1234344566778889999875 78888


Q ss_pred             EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +.+  ++  .|.+.+|+++++|.+|+|+|.+|+..
T Consensus        80 d~~--~~--~V~~~~g~~~~yD~LviAtG~~~~~~  110 (364)
T TIGR03169        80 DPD--RR--KVLLANRPPLSYDVLSLDVGSTTPLS  110 (364)
T ss_pred             ecc--cC--EEEECCCCcccccEEEEccCCCCCCC
Confidence            752  22  47778898999999999999988754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.58  E-value=1.5e-07  Score=94.02  Aligned_cols=90  Identities=23%  Similarity=0.292  Sum_probs=71.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+++|+|||||+.|+++|..|+++|++|+++++.+.+.       +. .++.++.....+.+++.||++++++.+..   
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  215 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR---  215 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence            46899999999999999999999999999999987752       11 14667888888889999999999987521   


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                             .+.+.+. .+.+|.||+|+|..
T Consensus       216 -------~v~~~~~-~~~~d~vvlAtGa~  236 (457)
T PRK11749        216 -------DITLDEL-RAGYDAVFIGTGAG  236 (457)
T ss_pred             -------ccCHHHH-HhhCCEEEEccCCC
Confidence                   1222222 37899999999985

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.57  E-value=8.6e-07  Score=82.43  Aligned_cols=97  Identities=19%  Similarity=0.289  Sum_probs=74.0

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------------------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-------------------------------------------   77 (356)
                      .|+|||||+.|+-+|..|++.|.+|+++|+.+.+...                                           
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            5899999999999999999999999999998642110                                           


Q ss_pred             -----cC-CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CCcEEecCeEEEecCCCC
Q 018416           78 -----LF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        78 -----~~-d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~vi~a~G~~p  139 (356)
                           .+ -.++.+.+.+.+++.|++++.+++++++..++ +.+ .+.+. ++.++.+|.||.|.|...
T Consensus        82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~-~~~-~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD-DRV-VVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC-CEE-EEEEcCccEEEEeCEEEECCCcch
Confidence                 01 12455667777888999999999999987633 332 34333 346799999999999764

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.57  E-value=3.5e-07  Score=97.71  Aligned_cols=91  Identities=27%  Similarity=0.304  Sum_probs=70.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------cc-CCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------RL-FTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------~~-~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+|+|+|||||+.|+.+|..|+++|++|+|+++.+.+..       .. ++.+....-.+.+++.||++++++.+ .+. 
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~-  615 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT-  615 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence            468999999999999999999999999999999876422       11 35556666667788899999999876 221 


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                                +.+.+...+|.||+|+|.++.
T Consensus       616 ----------le~L~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        616 ----------VEQLKNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             ----------hhhheeccCCEEEECcCCCCC
Confidence                      223345569999999998754

>PRK10262 thioredoxin reductase; Provisional

Probab=98.55  E-value=2.4e-06  Score=81.24  Aligned_cols=100  Identities=11%  Similarity=0.167  Sum_probs=71.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC---cc--------CCc----cCCHHHHHHHHHHHHhCCCEEEeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA---HC--------MAR----LFTPKIASYYEEYYKSKGVKFVKGT  102 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~---~~--------l~~----~~d~~~~~~~~~~l~~~GV~v~~~~  102 (356)
                      +.++++|||||+.|+.+|..|+++|.+|++++...   .+        ++.    ...+++.+.+.+.....+++++.+ 
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   83 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence            56899999999999999999999999999997432   11        011    123456777778888888888765 


Q ss_pred             eeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          103 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       103 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      .++.++. .++. ..+..+ ...+.+|.||+|+|.+|+.
T Consensus        84 ~v~~v~~-~~~~-~~v~~~-~~~~~~d~vilAtG~~~~~  119 (321)
T PRK10262         84 HINKVDL-QNRP-FRLTGD-SGEYTCDALIIATGASARY  119 (321)
T ss_pred             EEEEEEe-cCCe-EEEEec-CCEEEECEEEECCCCCCCC
Confidence            4666765 2332 234333 3478999999999998864

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.54  E-value=4.1e-07  Score=96.93  Aligned_cols=100  Identities=17%  Similarity=0.337  Sum_probs=76.5

Q ss_pred             CCcEEEECCchHHHHHHHHHHHC----CCcEEEEeeCCccC------CccC----CHHHHHHHHHHHHhCCCEEEeCCee
Q 018416           39 GGNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCM------ARLF----TPKIASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~----G~~Vtlv~~~~~~l------~~~~----d~~~~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      .+++||||+|+.|+.+|..|.++    +.+||++++.+++.      +..+    ..++.....+.+++.||+++.++.+
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V   82 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA   82 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence            46899999999999999999865    47899999987752      1111    1223333356778899999999999


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      ++++.  +.  ..|.+.+|+++++|.+|+|||.+|...
T Consensus        83 ~~Id~--~~--~~V~~~~G~~i~yD~LVIATGs~p~~p  116 (847)
T PRK14989         83 ITINR--QE--KVIHSSAGRTVFYDKLIMATGSYPWIP  116 (847)
T ss_pred             EEEeC--CC--cEEEECCCcEEECCEEEECCCCCcCCC
Confidence            99865  22  246678888999999999999988754

>PRK06834 hypothetical protein; Provisional

Probab=98.53  E-value=1.4e-06  Score=87.76  Aligned_cols=100  Identities=27%  Similarity=0.402  Sum_probs=77.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC---Ccc--CC----------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---ARL--FT----------------------------------   80 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l---~~~--~d----------------------------------   80 (356)
                      ..|+|||+|+.|+-+|..|++.|.+|+++|+.+.+.   ++.  +.                                  
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            579999999999999999999999999999875321   000  00                                  


Q ss_pred             ----------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416           81 ----------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        81 ----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                                      ..+.+.+.+.+++.||+++.++++++++.++++  ..+++.+|+++.+|+||.|.|.++..
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~v  158 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLV  158 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCc
Confidence                            122344556667789999999999999874443  34667788899999999999988754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.51  E-value=2.7e-07  Score=91.93  Aligned_cols=93  Identities=23%  Similarity=0.263  Sum_probs=71.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+++++|||+|+.|+++|..|++.|++|+++++.+.+.       +. .++.++.....+.+++.||++++++.+..   
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  208 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK---  208 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence            35789999999999999999999999999999987652       11 15677777777889999999999975411   


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCC-CCCc
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT  141 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~-~p~~  141 (356)
                             .+.+.+. ...+|.||+|+|. +|..
T Consensus       209 -------~v~~~~~-~~~yd~viiAtGa~~p~~  233 (449)
T TIGR01316       209 -------TATLEEL-FSQYDAVFIGTGAGLPKL  233 (449)
T ss_pred             -------cCCHHHH-HhhCCEEEEeCCCCCCCc
Confidence                   1223322 3469999999997 5643

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.51  E-value=6e-07  Score=87.15  Aligned_cols=99  Identities=26%  Similarity=0.406  Sum_probs=77.7

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccCC-cc---------CCHHHHHHHHHHHHhCC-CEEEeCCeee
Q 018416           39 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMA-RL---------FTPKIASYYEEYYKSKG-VKFVKGTVLS  105 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l~-~~---------~d~~~~~~~~~~l~~~G-V~v~~~~~v~  105 (356)
                      .+++||||||+.|+++|..|.+.-  .+||+|++.+..+- +.         -+.++.-.+.+.+++.+ |+++.+ +|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT   81 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence            579999999999999999999974  89999999876431 11         13455666778888666 998854 688


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          106 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       106 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +|+.  +.  ..|.+.++..+++|.+++++|.++++.
T Consensus        82 ~ID~--~~--k~V~~~~~~~i~YD~LVvalGs~~~~f  114 (405)
T COG1252          82 DIDR--DA--KKVTLADLGEISYDYLVVALGSETNYF  114 (405)
T ss_pred             EEcc--cC--CEEEeCCCccccccEEEEecCCcCCcC
Confidence            8875  33  356777888899999999999998875

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.49  E-value=9.4e-07  Score=87.82  Aligned_cols=101  Identities=15%  Similarity=0.205  Sum_probs=69.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccC------CccC----C-H-HHHHH-HHHHHHhCCCEEEeCCee
Q 018416           40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM------ARLF----T-P-KIASY-YEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l------~~~~----d-~-~~~~~-~~~~l~~~GV~v~~~~~v  104 (356)
                      ++|||||||+.|+.+|..|+++  +.+|||+++.+.+.      +..+    . . +.... .++..++.||+++.+++|
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            4799999999999999999987  67899999987532      1111    0 0 01111 123336679999999999


Q ss_pred             eEEEEcCCCcEEEEEeCC-Cc--EEecCeEEEecCCCCCch
Q 018416          105 SSFDVDSNGKVVAVNLRD-GN--RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~-g~--~i~~D~vi~a~G~~p~~~  142 (356)
                      ++++. ++. ...+...+ ++  ++++|.+|+|+|.+|+..
T Consensus        82 ~~Id~-~~~-~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~  120 (438)
T PRK13512         82 IAIND-ERQ-TVTVLNRKTNEQFEESYDKLILSPGASANSL  120 (438)
T ss_pred             EEEEC-CCC-EEEEEECCCCcEEeeecCEEEECCCCCCCCC
Confidence            99976 233 22333222 22  478999999999998643

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.48  E-value=1.9e-06  Score=84.20  Aligned_cols=101  Identities=23%  Similarity=0.380  Sum_probs=77.2

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc-------------C-Cc---------------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------------M-AR---------------------------   77 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~-------------l-~~---------------------------   77 (356)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+             + +.                           
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV   85 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence            468999999999999999999999999999986421             0 00                           


Q ss_pred             ---------cCC---------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEE
Q 018416           78 ---------LFT---------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  133 (356)
Q Consensus        78 ---------~~d---------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  133 (356)
                               .++               ..+.+.+.+.+++.|++++.++++++++.+++ . ..+++++|+++.+|.||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~-~-v~v~~~~g~~~~a~~vV~  163 (392)
T PRK08773         86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD-R-VRLRLDDGRRLEAALAIA  163 (392)
T ss_pred             EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC-e-EEEEECCCCEEEeCEEEE
Confidence                     000               22334455567778999999999999986433 3 347778888999999999


Q ss_pred             ecCCCCCc
Q 018416          134 GIGIRPNT  141 (356)
Q Consensus       134 a~G~~p~~  141 (356)
                      |.|..++.
T Consensus       164 AdG~~S~v  171 (392)
T PRK08773        164 ADGAASTL  171 (392)
T ss_pred             ecCCCchH
Confidence            99998754

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.48  E-value=7.6e-06  Score=72.17  Aligned_cols=166  Identities=17%  Similarity=0.210  Sum_probs=104.2

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc------C-------------------------------CH
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------F-------------------------------TP   81 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~------~-------------------------------d~   81 (356)
                      ...|+|||+|++|+-+|..|++.|.+|+++|++-.+....      |                               +.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~  109 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA  109 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence            3589999999999999999999999999999985442110      0                               12


Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-----------CCcEEecCeEEEecCCCCCch-hh-hcc-
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNTS-LF-EGQ-  147 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~-l~-~~~-  147 (356)
                      +....+...--+.|.+++.++.++.+.-.++.++..+.++           |.-.++++.|+=+||.....- ++ +.. 
T Consensus       110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~  189 (262)
T COG1635         110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP  189 (262)
T ss_pred             HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence            2333334444456899999999998865333256666543           334789999999999875542 22 111 


Q ss_pred             ---ccc-ccCcEEEe--c-----ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          148 ---LTL-EKGGIKVT--G-----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       148 ---l~~-~~g~I~vd--~-----~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                         ... ..+....+  |     +-+--.|++|++|-.+.--   +|.+++-|.-..=.-.|+.||+.++.
T Consensus       190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av---~G~pRMGPiFGgMllSGkkaAe~i~e  257 (262)
T COG1635         190 ELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAV---HGLPRMGPIFGGMLLSGKKAAEEILE  257 (262)
T ss_pred             ccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhh---cCCcccCchhhhhhhchHHHHHHHHH
Confidence               111 01111111  1     1122479999999887642   34444444444445677888876653

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.48  E-value=1.8e-06  Score=84.30  Aligned_cols=102  Identities=22%  Similarity=0.256  Sum_probs=75.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------------cC----
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------LF----   79 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------~~----   79 (356)
                      .+.+|+|||||+.|+-+|..|++.|++|+++|+.+.+...                                  ++    
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD   82 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence            3578999999999999999999999999999998643110                                  00    


Q ss_pred             ---------C----------------HHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEE
Q 018416           80 ---------T----------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  133 (356)
Q Consensus        80 ---------d----------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  133 (356)
                               +                .++.+.+.+.+.+. +|+++.++++++++.+++ . ..+.+.+|+++.+|+||.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~-v~v~~~~g~~~~ad~vV~  160 (396)
T PRK08163         83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD-G-VTVFDQQGNRWTGDALIG  160 (396)
T ss_pred             CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC-c-eEEEEcCCCEEecCEEEE
Confidence                     0                01122334444444 499999999999986333 3 347778898999999999


Q ss_pred             ecCCCCCc
Q 018416          134 GIGIRPNT  141 (356)
Q Consensus       134 a~G~~p~~  141 (356)
                      |.|..+..
T Consensus       161 AdG~~S~~  168 (396)
T PRK08163        161 CDGVKSVV  168 (396)
T ss_pred             CCCcChHH
Confidence            99987654

>PRK07045 putative monooxygenase; Reviewed

Probab=98.46  E-value=2.7e-06  Score=83.02  Aligned_cols=102  Identities=23%  Similarity=0.268  Sum_probs=77.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--------c---------------------c------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------R---------------------L------------   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--------~---------------------~------------   78 (356)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-.        +                     .            
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   85 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL   85 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence            4799999999999999999999999999998764310        0                     0            


Q ss_pred             -----------CC-------HHHHHHHHHHHH-hCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           79 -----------FT-------PKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        79 -----------~d-------~~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                                 .+       .++.+.+.+.+. ..|++++++++++.++.++++.+..+++++|+++.+|+||-|.|.+.
T Consensus        86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S  165 (388)
T PRK07045         86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS  165 (388)
T ss_pred             EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence                       00       012233334443 35799999999999987666655578888999999999999999776


Q ss_pred             Cc
Q 018416          140 NT  141 (356)
Q Consensus       140 ~~  141 (356)
                      ..
T Consensus       166 ~v  167 (388)
T PRK07045        166 MI  167 (388)
T ss_pred             HH
Confidence            44

>PRK08244 hypothetical protein; Provisional

Probab=98.46  E-value=2.1e-06  Score=86.61  Aligned_cols=102  Identities=24%  Similarity=0.335  Sum_probs=74.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------------   77 (356)
                      ..|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+.                                          
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            36999999999999999999999999999987432100                                          


Q ss_pred             cC--------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCCCCCc
Q 018416           78 LF--------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        78 ~~--------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~  141 (356)
                      .+              -..+.+.+.+.+++.|++++.++++++++.++++....+...+| +++.+|+||.|.|.++..
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v  161 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV  161 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence            00              01344555666777899999999999998744442222333356 479999999999987754

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.46  E-value=1.4e-06  Score=83.05  Aligned_cols=56  Identities=29%  Similarity=0.442  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      +.+.+.+.+++.|++++++++|+++.. +++.+..|.+.+|+ +.+|.||+|+|...+
T Consensus       149 l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~  204 (358)
T PF01266_consen  149 LIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSP  204 (358)
T ss_dssp             HHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred             hhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEecccccce
Confidence            444456677888999999999999987 46666669999987 999999999997543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.46  E-value=8.8e-07  Score=89.12  Aligned_cols=90  Identities=23%  Similarity=0.319  Sum_probs=70.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+++++|||+|++|+++|..|++.|.+|+++++.+++.       +. .++.++.....+.+++.||++++++.+..-  
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  219 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD--  219 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence            35799999999999999999999999999999988752       21 146677777778889999999999876311  


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                              +. .+.....+|.|++|+|..
T Consensus       220 --------~~-~~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       220 --------IS-ADELKEQFDAVVLAGGAT  239 (485)
T ss_pred             --------cC-HHHHHhhCCEEEEccCCC
Confidence                    00 111235799999999987

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12831 putative oxidoreductase; Provisional

Probab=98.45  E-value=4.6e-07  Score=90.67  Aligned_cols=94  Identities=24%  Similarity=0.320  Sum_probs=69.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Ccc-CCH-HHHHHHHHHHHhCCCEEEeCCeeeEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------ARL-FTP-KIASYYEEYYKSKGVKFVKGTVLSSFD  108 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~~-~d~-~~~~~~~~~l~~~GV~v~~~~~v~~i~  108 (356)
                      .+++++|||+|+.|+.+|..|+++|++|+++++.+.+.       +.+ ++. ++.....+.+++.||++++++.+..  
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~--  216 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK--  216 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence            46899999999999999999999999999999876542       110 223 3666667788999999999986521  


Q ss_pred             EcCCCcEEEEEeCCC-cEEecCeEEEecCC-CCCc
Q 018416          109 VDSNGKVVAVNLRDG-NRLPTDMVVVGIGI-RPNT  141 (356)
Q Consensus       109 ~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~-~p~~  141 (356)
                              .+.+.+. +.+.+|.||+|+|. .|..
T Consensus       217 --------~v~~~~~~~~~~~d~viiAtGa~~~~~  243 (464)
T PRK12831        217 --------TVTIDELLEEEGFDAVFIGSGAGLPKF  243 (464)
T ss_pred             --------cCCHHHHHhccCCCEEEEeCCCCCCCC
Confidence                    1222332 34579999999997 4643

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.45  E-value=1.6e-06  Score=86.38  Aligned_cols=95  Identities=21%  Similarity=0.385  Sum_probs=68.0

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----------------------------------CC-----
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------------------------FT-----   80 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-----------------------------------~d-----   80 (356)
                      .++|||+|+.|+++|..++++|++|+|+++. .+....                                   ++     
T Consensus         4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   82 (446)
T TIGR01424         4 DLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKLL   82 (446)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHHH
Confidence            6899999999999999999999999999974 221100                                   01     


Q ss_pred             -------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           81 -------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        81 -------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                             .++.+.+++.+++.||+++.+ ++..+..   ..+ .+ ..+|+++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~---~~v-~v-~~~g~~~~~d~lIiATGs~p~~p  145 (446)
T TIGR01424        83 QKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP---NTV-EV-LQDGTTYTAKKILIAVGGRPQKP  145 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC---CEE-EE-ecCCeEEEcCEEEEecCCcCCCC
Confidence                   123344556678889999877 4555532   222 23 24677899999999999998643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02463 lycopene beta cyclase

Probab=98.44  E-value=2e-06  Score=85.51  Aligned_cols=98  Identities=20%  Similarity=0.299  Sum_probs=73.8

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-CccC---------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-ARLF---------------------------------------   79 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-~~~~---------------------------------------   79 (356)
                      -+|+|||||+.|+.+|..|++.|.+|.++++.+... +...                                       
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y  108 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY  108 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence            379999999999999999999999999999875321 1100                                       


Q ss_pred             ----CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           80 ----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        80 ----d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                          ..++.+.+.+.+.+.||+++ ..+|++++..+++  ..|.+++|+++++|.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence                01223445555667899997 5689999864333  4677889999999999999998754

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.44  E-value=2.8e-06  Score=82.98  Aligned_cols=101  Identities=21%  Similarity=0.288  Sum_probs=77.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC-ccCCcc---------------C-----------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA-HCMARL---------------F-----------------------   79 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~-~~l~~~---------------~-----------------------   79 (356)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+ .+.+..               +                       
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            3579999999999999999999999999999972 221100               0                       


Q ss_pred             ---------------------CHHHHHHHHHHHHhCC-CEEEeCCeeeEEEEcCCCcEEEEEeC-CCcEEecCeEEEecC
Q 018416           80 ---------------------TPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIG  136 (356)
Q Consensus        80 ---------------------d~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~vi~a~G  136 (356)
                                           -.++...+.+.+.+.+ |+++.+++|+.++.++ +.+. ++++ +|+++.||++|-|-|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG  159 (387)
T COG0654          82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADG  159 (387)
T ss_pred             ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCC
Confidence                                 0134455666676665 9999999999998743 3443 7777 999999999999999


Q ss_pred             CCCCc
Q 018416          137 IRPNT  141 (356)
Q Consensus       137 ~~p~~  141 (356)
                      .....
T Consensus       160 ~~S~v  164 (387)
T COG0654         160 ANSAV  164 (387)
T ss_pred             CchHH
Confidence            76543

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.44  E-value=6.3e-07  Score=89.74  Aligned_cols=93  Identities=22%  Similarity=0.315  Sum_probs=72.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+++|+|||+|++|+.+|..|+++|.+|+++++.+.+.       +. .++.++.....+.+++.||++++++.+..-  
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence            46789999999999999999999999999999987652       21 156777777788899999999999876321  


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                              +.+.+ ....+|.||+|+|..+..
T Consensus       218 --------~~~~~-~~~~~D~vilAtGa~~~~  240 (467)
T TIGR01318       218 --------ISLDD-LLEDYDAVFLGVGTYRSM  240 (467)
T ss_pred             --------cCHHH-HHhcCCEEEEEeCCCCCC
Confidence                    11111 124699999999987753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.43  E-value=2.6e-06  Score=87.13  Aligned_cols=98  Identities=19%  Similarity=0.318  Sum_probs=74.8

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC------------Cc---cCCHHHHHHHHHHHHhCCCEEEeCCee
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------AR---LFTPKIASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l------------~~---~~d~~~~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      -.|+|||||+.|+.+|..|++.|.+|+++++.+ +.            +.   ...+++.+.+++.+++.|++++ ++.+
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V   82 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV   82 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence            479999999999999999999999999999864 21            11   0124677778888888999986 6678


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +++..+  +....+.+.++ ++.+|.+|+|+|.+|...
T Consensus        83 ~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~~  117 (555)
T TIGR03143        83 LDVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRKL  117 (555)
T ss_pred             EEEEec--CCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence            888752  33334555555 689999999999988653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.42  E-value=2.2e-06  Score=83.38  Aligned_cols=98  Identities=15%  Similarity=0.266  Sum_probs=71.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccC--CccCC---------HHHHH-HHHHHHHhCCCEEEeCCeee
Q 018416           40 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCM--ARLFT---------PKIAS-YYEEYYKSKGVKFVKGTVLS  105 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l--~~~~d---------~~~~~-~~~~~l~~~GV~v~~~~~v~  105 (356)
                      +++||||+|+.|+.+|..|++++  .+||++.+.+...  ...+.         .++.. ...+.+++.||+++.+++|+
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            58999999999999999998864  5799998876421  11121         12222 23455678899999999999


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          106 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       106 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +++. ++.   .+.+ +++++++|.+|+|+|.+|...
T Consensus        83 ~id~-~~~---~v~~-~~~~~~yd~LVlATG~~~~~p  114 (377)
T PRK04965         83 DIDA-EAQ---VVKS-QGNQWQYDKLVLATGASAFVP  114 (377)
T ss_pred             EEEC-CCC---EEEE-CCeEEeCCEEEECCCCCCCCC
Confidence            9975 222   2333 577899999999999988643

>PLN02661 Putative thiazole synthesis

Probab=98.42  E-value=1.6e-05  Score=76.01  Aligned_cols=167  Identities=15%  Similarity=0.183  Sum_probs=102.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHC-CCcEEEEeeCCccCC----------cc----------------CCH---------
Q 018416           38 SGGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMA----------RL----------------FTP---------   81 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~-G~~Vtlv~~~~~~l~----------~~----------------~d~---------   81 (356)
                      ..-.|+|||+|..|+-+|..|++. |.+|+++++...+..          ..                ++.         
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h  170 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH  170 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence            345899999999999999999986 899999999754311          00                111         


Q ss_pred             --HHHHHHH-HHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC------C--C------cEEecCeEEEecCCCCCch--
Q 018416           82 --KIASYYE-EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR------D--G------NRLPTDMVVVGIGIRPNTS--  142 (356)
Q Consensus        82 --~~~~~~~-~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~------~--g------~~i~~D~vi~a~G~~p~~~--  142 (356)
                        +....+. +.+++.||+++.++.+.++.. +++++..+.+.      +  +      ..+.++.||+|+|..+...  
T Consensus       171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~  249 (357)
T PLN02661        171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT  249 (357)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhh
Confidence              1112233 344457999999999999876 45666666531      1  1      2689999999999665321  


Q ss_pred             hhhcc--ccc-c----cCcEEEe--c-----ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416          143 LFEGQ--LTL-E----KGGIKVT--G-----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       143 l~~~~--l~~-~----~g~I~vd--~-----~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                      ..+..  +.. .    .....++  |     +-+--+|++|++|-.+.--   .|.+++-|.-..=...|+.||+.++..
T Consensus       250 ~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~---~g~~rmgp~fg~m~~sg~k~a~~~~~~  326 (357)
T PLN02661        250 GVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEI---DGSPRMGPTFGAMMISGQKAAHLALKA  326 (357)
T ss_pred             hhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhh---cCCCccCchhHhHHhhhHHHHHHHHHH
Confidence            11100  000 0    0111121  1     1112489999999887643   355554444444456788888877643

>PRK07588 hypothetical protein; Provisional

Probab=98.42  E-value=3.1e-06  Score=82.67  Aligned_cols=98  Identities=15%  Similarity=0.137  Sum_probs=72.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC---------c----------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------R----------------------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~---------~----------------------------------   77 (356)
                      +|+|||||+.|+-+|..|++.|.+|+++|+.+.+-.         .                                  
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~   81 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK   81 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence            699999999999999999999999999998754311         0                                  


Q ss_pred             -cCC-----------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           78 -LFT-----------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        78 -~~d-----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                       .++                 .++.+.+.+.+ ..|+++++++++++++.++ +. ..+.+++|+++.+|+||-|.|.++
T Consensus        82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~-~~-v~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHR-DG-VRVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECC-Ce-EEEEECCCCEEEeCEEEECCCCCc
Confidence             000                 00111222222 3479999999999998743 33 357888999999999999999766


Q ss_pred             Cc
Q 018416          140 NT  141 (356)
Q Consensus       140 ~~  141 (356)
                      ..
T Consensus       159 ~v  160 (391)
T PRK07588        159 HV  160 (391)
T ss_pred             cc
Confidence            55

>PRK05868 hypothetical protein; Validated

Probab=98.42  E-value=2.8e-06  Score=82.55  Aligned_cols=100  Identities=20%  Similarity=0.196  Sum_probs=73.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------------c-------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------L-------   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------~-------   78 (356)
                      ++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...                                  +       
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            47999999999999999999999999999987543110                                  0       


Q ss_pred             --CCH---H------------HHHHHHHHHH---hCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           79 --FTP---K------------IASYYEEYYK---SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        79 --~d~---~------------~~~~~~~~l~---~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                        .+.   .            ....+.+.|.   ..|+++++++++++++.++ +. ..+++++|+++++|+||-|-|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~-~~-v~v~~~dg~~~~adlvIgADG~~  159 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDG-DS-VRVTFERAAAREFDLVIGADGLH  159 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecC-Ce-EEEEECCCCeEEeCEEEECCCCC
Confidence              000   0            0112223332   3589999999999997633 33 45788999999999999999977


Q ss_pred             CCc
Q 018416          139 PNT  141 (356)
Q Consensus       139 p~~  141 (356)
                      ...
T Consensus       160 S~v  162 (372)
T PRK05868        160 SNV  162 (372)
T ss_pred             chH
Confidence            654

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.41  E-value=3.2e-06  Score=82.98  Aligned_cols=100  Identities=17%  Similarity=0.289  Sum_probs=74.8

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc----------cCCc--------------------c-----------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH----------CMAR--------------------L-----------   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~----------~l~~--------------------~-----------   78 (356)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.          ..++                    .           
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   82 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM   82 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence            3699999999999999999999999999998751          0000                    0           


Q ss_pred             ------------CC---------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeE
Q 018416           79 ------------FT---------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV  131 (356)
Q Consensus        79 ------------~d---------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~v  131 (356)
                                  ++               ..+.+.+.+.+++.|++++.++++++++.++++  ..+.+.+|+++.+|+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v  160 (405)
T PRK05714         83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV  160 (405)
T ss_pred             EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence                        00               012223445566679999999999999874444  3577888989999999


Q ss_pred             EEecCCCCCc
Q 018416          132 VVGIGIRPNT  141 (356)
Q Consensus       132 i~a~G~~p~~  141 (356)
                      |.|.|.....
T Consensus       161 VgAdG~~S~v  170 (405)
T PRK05714        161 VAADGANSAV  170 (405)
T ss_pred             EEecCCCchh
Confidence            9999986644

>PRK06184 hypothetical protein; Provisional

Probab=98.40  E-value=3.7e-06  Score=84.99  Aligned_cols=99  Identities=16%  Similarity=0.253  Sum_probs=74.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------------c-------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------L-------   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------~-------   78 (356)
                      -+|+|||+|+.|+-+|..|++.|++|+|+|+.+.+...                                  .       
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   83 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV   83 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence            47999999999999999999999999999987433100                                  0       


Q ss_pred             ----------------------CC-HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe---CCCcEEecCeEE
Q 018416           79 ----------------------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVV  132 (356)
Q Consensus        79 ----------------------~d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~vi  132 (356)
                                            ++ ..+.+.+.+.+++.|++++.++++++++.++++ + .+.+   .+++++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~~~~~~~i~a~~vV  161 (502)
T PRK06184         84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAGPAGEETVRARYLV  161 (502)
T ss_pred             EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEeCCCeEEEEeCEEE
Confidence                                  00 112345566677789999999999999875444 2 3444   556789999999


Q ss_pred             EecCCCCC
Q 018416          133 VGIGIRPN  140 (356)
Q Consensus       133 ~a~G~~p~  140 (356)
                      .|.|.+..
T Consensus       162 gADG~~S~  169 (502)
T PRK06184        162 GADGGRSF  169 (502)
T ss_pred             ECCCCchH
Confidence            99997754

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.40  E-value=2.4e-06  Score=82.68  Aligned_cols=95  Identities=24%  Similarity=0.343  Sum_probs=70.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC-CccCC-------------------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCMA-------------------------------------------   76 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~-~~~l~-------------------------------------------   76 (356)
                      .|+|||||..|+|+|..+++.|.+|.|+... +.+..                                           
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            4899999999999999999999999999432 22110                                           


Q ss_pred             ---c------cCCH-HHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416           77 ---R------LFTP-KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        77 ---~------~~d~-~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                         .      ..|. ...+.+++.|++ .+++++ ...|+++.. +++++..|.+.+|+.+.+|.||+++|.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence               0      1222 234556667766 688887 568999977 678999999999999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.40  E-value=8.9e-07  Score=88.64  Aligned_cols=92  Identities=17%  Similarity=0.209  Sum_probs=67.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHH--CCCcEEEEeeCCccCC--------cc-CCHHHHHHHHHHHHhCCCEEEeCCeeeE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVI--NKINVTMVFPEAHCMA--------RL-FTPKIASYYEEYYKSKGVKFVKGTVLSS  106 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~--~G~~Vtlv~~~~~~l~--------~~-~d~~~~~~~~~~l~~~GV~v~~~~~v~~  106 (356)
                      .+++|+|||+|+.|+.+|..|++  .|++|||+++.+.+..        .. ....+...+.+.++..+|+++.+..+..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~  104 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR  104 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence            46899999999999999999987  7999999999987642        10 1123444556667788999998765521


Q ss_pred             EEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416          107 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus       107 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                                .+.+.+.+ ..+|.||+|+|..+.
T Consensus       105 ----------dvtl~~L~-~~yDaVIlAtGa~~~  127 (491)
T PLN02852        105 ----------DVSLSELR-DLYHVVVLAYGAESD  127 (491)
T ss_pred             ----------cccHHHHh-hhCCEEEEecCCCCC
Confidence                      13333332 469999999998764

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.39  E-value=4e-06  Score=82.03  Aligned_cols=98  Identities=24%  Similarity=0.418  Sum_probs=75.2

Q ss_pred             cEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccCCc-----------------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMAR-----------------------------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l~~-----------------------------------------   77 (356)
                      +|+|||||+.|+-+|..|++.|  .+|+++|+.+...+.                                         
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   82 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR   82 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence            6899999999999999999995  999999986431000                                         


Q ss_pred             ----------cC---------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEE
Q 018416           78 ----------LF---------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV  132 (356)
Q Consensus        78 ----------~~---------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi  132 (356)
                                .+               ..++.+.+.+.+++.|++++.++++++++.+++ . ..+++++|+++.+|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~-v~v~~~~g~~~~ad~vI  160 (403)
T PRK07333         83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDE-G-VTVTLSDGSVLEARLLV  160 (403)
T ss_pred             CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-E-EEEEECCCCEEEeCEEE
Confidence                      00               012345566667778999999999999976333 3 35778889999999999


Q ss_pred             EecCCCCC
Q 018416          133 VGIGIRPN  140 (356)
Q Consensus       133 ~a~G~~p~  140 (356)
                      .|.|..+.
T Consensus       161 ~AdG~~S~  168 (403)
T PRK07333        161 AADGARSK  168 (403)
T ss_pred             EcCCCChH
Confidence            99998765

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.39  E-value=8.2e-07  Score=94.05  Aligned_cols=94  Identities=22%  Similarity=0.283  Sum_probs=71.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+++|+|||+|+.|+.+|..|+++|++|+++++.+.+.       |. .++.++.....+.+++.||++++++.+..   
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~---  506 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK---  506 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence            46799999999999999999999999999999865432       11 14566777777788999999999875411   


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCC-CCCc
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT  141 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~-~p~~  141 (356)
                             .+.+.+.....+|.||+|+|. .|..
T Consensus       507 -------~v~~~~l~~~~ydavvlAtGa~~~~~  532 (752)
T PRK12778        507 -------TITIEELEEEGFKGIFIASGAGLPNF  532 (752)
T ss_pred             -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence                   233344445679999999997 4653

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=1.1e-05  Score=76.10  Aligned_cols=99  Identities=16%  Similarity=0.293  Sum_probs=75.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCcc-----------CC----ccCCHHHHHHHHHHHHhCCCEEEeCCe
Q 018416           40 GNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHC-----------MA----RLFTPKIASYYEEYYKSKGVKFVKGTV  103 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~~-----------l~----~~~d~~~~~~~~~~l~~~GV~v~~~~~  103 (356)
                      -.|+|||+|+.|+-+|-.+.+.+.+ +.+++....-           .|    ....+++.+.+.+..+..|+++.. ..
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~   82 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE   82 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence            4799999999999999999999998 4555443111           11    124578888888888889999987 67


Q ss_pred             eeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          104 LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       104 v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +.+++..++  ...+++.+++ +.++.||+|+|..+...
T Consensus        83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARKL  118 (305)
T ss_pred             EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccCC
Confidence            777765322  4678888877 99999999999776543

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.35  E-value=1.6e-06  Score=93.10  Aligned_cols=90  Identities=19%  Similarity=0.171  Sum_probs=67.6

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  110 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~  110 (356)
                      +++|+|||||+.|+.+|..|+++|++|||+++.+.+...        .++.+......+.+.+.||++++++...     
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d-----  611 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD-----  611 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence            578999999999999999999999999999988754221        1345566666677888999999874311     


Q ss_pred             CCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416          111 SNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus       111 ~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                             +.+.+.+...+|.|++|+|.++.
T Consensus       612 -------~~ve~l~~~gYDaVIIATGA~~~  634 (1012)
T TIGR03315       612 -------LTVAELKNQGYKYVILAIGAWKH  634 (1012)
T ss_pred             -------eEhhhhhcccccEEEECCCCCCC
Confidence                   11223345669999999998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.35  E-value=6e-06  Score=80.19  Aligned_cols=98  Identities=14%  Similarity=0.299  Sum_probs=73.3

Q ss_pred             cEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCccCCc--------cCC-------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMAR--------LFT-------------------------------   80 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~l~~--------~~d-------------------------------   80 (356)
                      .|+|||||+.|+-+|..|++.| .+|+++|+.+.+-+.        .+.                               
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            4899999999999999999999 999999987532110        000                               


Q ss_pred             ------------------------HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEec
Q 018416           81 ------------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  135 (356)
Q Consensus        81 ------------------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  135 (356)
                                              .++.+.+.+.+.+ .|++++.++++++++.++++  ..+.+++|+++.+|.||.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad  158 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD  158 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence                                    1123334455555 49999999999999864443  35677888899999999999


Q ss_pred             CCCCC
Q 018416          136 GIRPN  140 (356)
Q Consensus       136 G~~p~  140 (356)
                      |....
T Consensus       159 G~~S~  163 (382)
T TIGR01984       159 GANSK  163 (382)
T ss_pred             CCChH
Confidence            97643

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.35  E-value=6.3e-06  Score=80.22  Aligned_cols=98  Identities=24%  Similarity=0.360  Sum_probs=74.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC---------------------cc-C------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------------RL-F------------------   79 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~---------------------~~-~------------------   79 (356)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..                     .. +                  
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   85 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF   85 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence            4799999999999999999999999999998865321                     00 0                  


Q ss_pred             ------------------------CHHHHHHHHHHHHhCC-CEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEe
Q 018416           80 ------------------------TPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  134 (356)
Q Consensus        80 ------------------------d~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a  134 (356)
                                              ...+.+.+.+.+++.| ++++ ++++++++..+++  ..+++.+|+++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~a  162 (388)
T PRK07608         86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGA  162 (388)
T ss_pred             ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEe
Confidence                                    1123344556667777 9998 8999998763333  3577888888999999999


Q ss_pred             cCCCCC
Q 018416          135 IGIRPN  140 (356)
Q Consensus       135 ~G~~p~  140 (356)
                      .|....
T Consensus       163 dG~~S~  168 (388)
T PRK07608        163 DGAHSW  168 (388)
T ss_pred             CCCCch
Confidence            998754

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.33  E-value=2.6e-06  Score=85.67  Aligned_cols=82  Identities=26%  Similarity=0.262  Sum_probs=66.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|+|+|.+|+++|..|+++|.+|+++++.+.        +....+.+.|++.||+++++..+.            
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence            578999999999999999999999999999987642        233455677888999998876432            


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                            ....+|+||+++|..|+..++.
T Consensus        75 ------~~~~~D~Vv~s~Gi~~~~~~~~   96 (480)
T PRK01438         75 ------LPEDTDLVVTSPGWRPDAPLLA   96 (480)
T ss_pred             ------ccCCCCEEEECCCcCCCCHHHH
Confidence                  1245899999999999998754

>PRK06116 glutathione reductase; Validated

Probab=98.32  E-value=3.3e-06  Score=84.14  Aligned_cols=94  Identities=22%  Similarity=0.423  Sum_probs=66.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------cCC-H-
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFT-P-   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------~~d-~-   81 (356)
                      -.++|||+|+.|+.+|..++++|.+|+|+++. .+...                                    .++ . 
T Consensus         5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (450)
T PRK06116          5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAK   83 (450)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHH
Confidence            36999999999999999999999999999985 22000                                    000 0 


Q ss_pred             ----------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           82 ----------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        82 ----------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                                .+.+.+.+.+++.||+++.++ ++.+.   ..   .+++ +|+++.+|.+|+|+|.+|+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~---~~---~v~~-~g~~~~~d~lViATGs~p~~p  146 (450)
T PRK06116         84 LIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVD---AH---TVEV-NGERYTADHILIATGGRPSIP  146 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc---CC---EEEE-CCEEEEeCEEEEecCCCCCCC
Confidence                      011223445677899999874 34442   22   3444 677899999999999998754

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.32  E-value=4.8e-06  Score=79.24  Aligned_cols=102  Identities=25%  Similarity=0.379  Sum_probs=73.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------------------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-------------------------------------------   77 (356)
                      +|+|||||+.|+-+|..|++.|++|+|+|+.+.+.+.                                           
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~   82 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD   82 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence            5899999999999999999999999999998433110                                           


Q ss_pred             ------------cC-------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CC--cEEecC
Q 018416           78 ------------LF-------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTD  129 (356)
Q Consensus        78 ------------~~-------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D  129 (356)
                                  .+             -.++.+.+.+.+++.|++++.+++++.++.+.++....+... +|  +++++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad  162 (356)
T PF01494_consen   83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD  162 (356)
T ss_dssp             SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred             ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence                        00             034566677778888999999999999987555432233333 34  368999


Q ss_pred             eEEEecCCCCCch
Q 018416          130 MVVVGIGIRPNTS  142 (356)
Q Consensus       130 ~vi~a~G~~p~~~  142 (356)
                      +||-|-|.+....
T Consensus       163 lvVgADG~~S~vR  175 (356)
T PF01494_consen  163 LVVGADGAHSKVR  175 (356)
T ss_dssp             EEEE-SGTT-HHH
T ss_pred             eeecccCcccchh
Confidence            9999999876543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06753 hypothetical protein; Provisional

Probab=98.32  E-value=3.4e-06  Score=81.70  Aligned_cols=100  Identities=19%  Similarity=0.250  Sum_probs=71.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----cCCHHH---------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----LFTPKI---------------------------------   83 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----~~d~~~---------------------------------   83 (356)
                      +|+|||||+.|+-+|..|++.|++|+|+|+.+.+...    .+.+..                                 
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            6999999999999999999999999999988653110    000000                                 


Q ss_pred             ---------------HHHHHHHHHh--CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           84 ---------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        84 ---------------~~~~~~~l~~--~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                                     ...+.+.|.+  .+.++++++++++++.+ ++. ..+.+++|+++.+|+||-|.|.++.+.
T Consensus        82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~~~~vigadG~~S~vR  155 (373)
T PRK06753         82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDK-VTIHFADGESEAFDLCIGADGIHSKVR  155 (373)
T ss_pred             eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCc-EEEEECCCCEEecCEEEECCCcchHHH
Confidence                           1112233322  24578999999999863 333 457788999999999999999766543

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.32  E-value=8e-06  Score=80.93  Aligned_cols=97  Identities=22%  Similarity=0.383  Sum_probs=72.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------------c---------CC----------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------L---------FT----------------   80 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------------~---------~d----------------   80 (356)
                      -.|+|||||+.|+-+|..|++.|.+|+++|+.+.+..+              .         +.                
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA   85 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence            47999999999999999999999999999987532100              0         00                


Q ss_pred             ----------------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           81 ----------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        81 ----------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                                            .++-+.+.+..++.|++++.+++++++.. +++.+..+. .++.++.+|.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~-~~g~v~~v~-~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157         86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVE-ADGDVIEAKTVILADGVN  163 (428)
T ss_pred             eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE-eCCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence                                  01123345556678999999999999876 345544443 567789999999999974

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.32  E-value=1.6e-06  Score=87.02  Aligned_cols=91  Identities=19%  Similarity=0.271  Sum_probs=69.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------c-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..       . .++.++.....+.+++.||++++++.+.. . 
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~-  219 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D-  219 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence            357999999999999999999999999999999876531       1 14566667777788999999999986532 0 


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                              +.. +.....+|.|++|+|..+
T Consensus       220 --------~~~-~~~~~~~d~vvlAtGa~~  240 (471)
T PRK12810        220 --------ITA-EELLAEYDAVFLGTGAYK  240 (471)
T ss_pred             --------CCH-HHHHhhCCEEEEecCCCC
Confidence                    000 112347999999999873

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.32  E-value=1.5e-06  Score=90.45  Aligned_cols=92  Identities=20%  Similarity=0.302  Sum_probs=71.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC--------CccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l--------~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+++|+|||+|++|+.+|..|++.|++||++++.+.+.        +..++.++.+...+.+++.||++++++.+..   
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence            36899999999999999999999999999999998643        1126777777777889999999999987631   


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                        +     +.+.+ ....+|.|++++|..+.
T Consensus       386 --~-----~~~~~-l~~~~DaV~latGa~~~  408 (639)
T PRK12809        386 --D-----ITFSD-LTSEYDAVFIGVGTYGM  408 (639)
T ss_pred             --c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence              1     11211 23468999999998654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.31  E-value=1.6e-06  Score=94.20  Aligned_cols=93  Identities=23%  Similarity=0.264  Sum_probs=70.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+++|+|||||+.|+.+|..|+++|++|||+++.+.+.       +. .++.++.....+.+++.||++++++.+..   
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~---  505 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK---  505 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC---
Confidence            35799999999999999999999999999999987652       11 14678888888889999999999965411   


Q ss_pred             cCCCcEEEEEeCCC-cEEecCeEEEecCCC-CC
Q 018416          110 DSNGKVVAVNLRDG-NRLPTDMVVVGIGIR-PN  140 (356)
Q Consensus       110 ~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~-p~  140 (356)
                             .+.+.+- ....+|.||+|+|.. |.
T Consensus       506 -------~~~~~~l~~~~~yDaViIATGa~~pr  531 (1006)
T PRK12775        506 -------TFTVPQLMNDKGFDAVFLGVGAGAPT  531 (1006)
T ss_pred             -------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence                   1111111 124589999999984 54

>PRK09126 hypothetical protein; Provisional

Probab=98.31  E-value=8.8e-06  Score=79.38  Aligned_cols=101  Identities=25%  Similarity=0.370  Sum_probs=73.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-----------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-----------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-----------------------------------   77 (356)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-       ..                                   
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   83 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL   83 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence            479999999999999999999999999999875310       00                                   


Q ss_pred             --------cCCH---------------HHHHHHHHHH-HhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEE
Q 018416           78 --------LFTP---------------KIASYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  133 (356)
Q Consensus        78 --------~~d~---------------~~~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  133 (356)
                              .++.               .+.+.+.+.+ +..|++++.++++++++.+++ . ..+.+++|+++.+|+||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~-~-~~v~~~~g~~~~a~~vI~  161 (392)
T PRK09126         84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD-G-AQVTLANGRRLTARLLVA  161 (392)
T ss_pred             cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC-e-EEEEEcCCCEEEeCEEEE
Confidence                    0000               0112222233 346899999999999976333 3 357788899999999999


Q ss_pred             ecCCCCCch
Q 018416          134 GIGIRPNTS  142 (356)
Q Consensus       134 a~G~~p~~~  142 (356)
                      |.|..+...
T Consensus       162 AdG~~S~vr  170 (392)
T PRK09126        162 ADSRFSATR  170 (392)
T ss_pred             eCCCCchhh
Confidence            999877653

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.31  E-value=5.5e-06  Score=82.31  Aligned_cols=98  Identities=21%  Similarity=0.230  Sum_probs=65.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC----------CccC---------C-HHH-----------HHHHH
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------ARLF---------T-PKI-----------ASYYE   88 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l----------~~~~---------d-~~~-----------~~~~~   88 (356)
                      -.++|||||+.|+++|..++++|.+|+|+++.+.++          |...         + +++           .....
T Consensus         4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (438)
T PRK07251          4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNY   83 (438)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999876321          1100         0 111           11122


Q ss_pred             HHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-CcEEecCeEEEecCCCCCch
Q 018416           89 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        89 ~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +.+.+.||+++.++.  .+.  ++.. ..+...+ ..++.+|.||+|+|.+|+..
T Consensus        84 ~~~~~~gV~~~~g~~--~~~--~~~~-v~v~~~~~~~~~~~d~vViATGs~~~~p  133 (438)
T PRK07251         84 AMLAGSGVDLYDAEA--HFV--SNKV-IEVQAGDEKIELTAETIVINTGAVSNVL  133 (438)
T ss_pred             HHHHhCCCEEEEEEE--EEc--cCCE-EEEeeCCCcEEEEcCEEEEeCCCCCCCC
Confidence            456778999987653  221  2222 2233222 24799999999999998653

>PRK08013 oxidoreductase; Provisional

Probab=98.30  E-value=8.7e-06  Score=79.89  Aligned_cols=100  Identities=19%  Similarity=0.234  Sum_probs=73.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--------c--cCCH----------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------R--LFTP----------------------------   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--------~--~~d~----------------------------   81 (356)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-.        +  .+.+                            
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~   83 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV   83 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence            4799999999999999999999999999998754110        0  0000                            


Q ss_pred             ----------------------------HHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEE
Q 018416           82 ----------------------------KIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV  132 (356)
Q Consensus        82 ----------------------------~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi  132 (356)
                                                  ++.+.+.+.+++. ||+++.++++++++.++++  ..+++.+|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV  161 (400)
T PRK08013         84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV  161 (400)
T ss_pred             EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence                                        1122233334443 7999999999999764443  45778899999999999


Q ss_pred             EecCCCCCc
Q 018416          133 VGIGIRPNT  141 (356)
Q Consensus       133 ~a~G~~p~~  141 (356)
                      -|-|.....
T Consensus       162 gADG~~S~v  170 (400)
T PRK08013        162 GADGANSWL  170 (400)
T ss_pred             EeCCCCcHH
Confidence            999987654

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.30  E-value=7.4e-06  Score=79.91  Aligned_cols=101  Identities=16%  Similarity=0.251  Sum_probs=72.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc--cC---C---c--cCCH-------------H--------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--CM---A---R--LFTP-------------K--------------   82 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~--~l---~---~--~~d~-------------~--------------   82 (356)
                      -+|+|||||+.|+-+|..|++.|.+|+++|+.+.  ..   +   +  .+.+             .              
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~   83 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET   83 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence            4799999999999999999999999999997641  00   0   0  0000             0              


Q ss_pred             ----------------------------HHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEE
Q 018416           83 ----------------------------IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  133 (356)
Q Consensus        83 ----------------------------~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  133 (356)
                                                  +...+.+.+++ .|++++.++++++++.++++  ..+++++|+++.+|+||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg  161 (384)
T PRK08849         84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG  161 (384)
T ss_pred             EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence                                        00111222223 37999999999999874444  457888999999999999


Q ss_pred             ecCCCCCch
Q 018416          134 GIGIRPNTS  142 (356)
Q Consensus       134 a~G~~p~~~  142 (356)
                      |.|..+...
T Consensus       162 ADG~~S~vR  170 (384)
T PRK08849        162 ADGANSQVR  170 (384)
T ss_pred             ecCCCchhH
Confidence            999877654

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.30  E-value=8.9e-06  Score=79.94  Aligned_cols=101  Identities=18%  Similarity=0.337  Sum_probs=71.4

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC----Cc--cC---------------------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----AR--LF---------------------------------   79 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l----~~--~~---------------------------------   79 (356)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-    ++  .+                                 
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   97 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD   97 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence            4589999999999999999999999999999875321    00  00                                 


Q ss_pred             -------C---------------HHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCC-C--cEEecCeEEE
Q 018416           80 -------T---------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRD-G--NRLPTDMVVV  133 (356)
Q Consensus        80 -------d---------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~-g--~~i~~D~vi~  133 (356)
                             +               ..+.+.+.+.+.+. ||+++.++++++++.++++  ..+++.+ +  .++.+|+||.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~adlvIg  175 (415)
T PRK07364         98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--ATVTLEIEGKQQTLQSKLVVA  175 (415)
T ss_pred             CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--eEEEEccCCcceEEeeeEEEE
Confidence                   0               11222333334443 7999999999999764443  3455543 2  4699999999


Q ss_pred             ecCCCCCc
Q 018416          134 GIGIRPNT  141 (356)
Q Consensus       134 a~G~~p~~  141 (356)
                      |.|.....
T Consensus       176 ADG~~S~v  183 (415)
T PRK07364        176 ADGARSPI  183 (415)
T ss_pred             eCCCCchh
Confidence            99987654

>PRK07190 hypothetical protein; Provisional

Probab=98.29  E-value=9.2e-06  Score=81.82  Aligned_cols=99  Identities=19%  Similarity=0.370  Sum_probs=74.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC----------------------------------------cc-
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------------------------RL-   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~----------------------------------------~~-   78 (356)
                      -.|+|||+|+.|+-+|..|++.|.+|+++|+.+.+..                                        .. 
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i   85 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI   85 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence            4799999999999999999999999999998753210                                        00 


Q ss_pred             ---------CC------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416           79 ---------FT------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        79 ---------~d------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                               ++            ..+-+.+.+.+++.|++++.++++++++.++++  ..+.+.+|+++.+++||.|.|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~v~~~~g~~v~a~~vVgADG~  163 (487)
T PRK07190         86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CLTTLSNGERIQSRYVIGADGS  163 (487)
T ss_pred             eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eEEEECCCcEEEeCEEEECCCC
Confidence                     00            112234455667789999999999999875444  2355677889999999999998


Q ss_pred             CCC
Q 018416          138 RPN  140 (356)
Q Consensus       138 ~p~  140 (356)
                      +..
T Consensus       164 ~S~  166 (487)
T PRK07190        164 RSF  166 (487)
T ss_pred             CHH
Confidence            653

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.29  E-value=1.1e-05  Score=78.34  Aligned_cols=98  Identities=18%  Similarity=0.316  Sum_probs=73.4

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------c--cCC-------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R--LFT-------------------------------   80 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------~--~~d-------------------------------   80 (356)
                      .|+|||+|+.|+-+|..|++.|.+|+|+|+.+.+-.       +  .+.                               
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            489999999999999999999999999999864200       0  000                               


Q ss_pred             -------------------------HHHHHHHHHHHHhCC-CEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEe
Q 018416           81 -------------------------PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  134 (356)
Q Consensus        81 -------------------------~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a  134 (356)
                                               .++.+.+.+.+.+.| ++++.++++++++.+ ++. ..+++++|+++.+|.||.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~-~~v~~~~g~~~~~~~vi~a  158 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDH-VELTLDDGQQLRARLLVGA  158 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCe-eEEEECCCCEEEeeEEEEe
Confidence                                     012233444555666 999999999999763 333 3577889999999999999


Q ss_pred             cCCCCC
Q 018416          135 IGIRPN  140 (356)
Q Consensus       135 ~G~~p~  140 (356)
                      .|....
T Consensus       159 dG~~S~  164 (385)
T TIGR01988       159 DGANSK  164 (385)
T ss_pred             CCCCCH
Confidence            997654

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.28  E-value=1.2e-05  Score=80.51  Aligned_cols=100  Identities=24%  Similarity=0.348  Sum_probs=68.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc--------cCCc---------------------c--------CCH-
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------CMAR---------------------L--------FTP-   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~--------~l~~---------------------~--------~d~-   81 (356)
                      ++++|||+|+.|+++|..++++|.+|+++++.+-        +.|.                     .        +|. 
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   81 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP   81 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence            5799999999999999999999999999998640        0000                     0        010 


Q ss_pred             H-----------HHHHHHHHHHhCCCEEEeCCeeeEEEE-cCCCcEEEEEeCCCc--EEecCeEEEecCCCCCc
Q 018416           82 K-----------IASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        82 ~-----------~~~~~~~~l~~~GV~v~~~~~v~~i~~-~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~  141 (356)
                      .           +.+.+.+.|++.||+++.+.. +.++. .++.. ..+.+.+|+  ++.+|.+|+|+|.+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~~~-v~V~~~~g~~~~~~~d~lViATGs~p~~  153 (466)
T PRK07845         82 AVNARVKALAAAQSADIRARLEREGVRVIAGRG-RLIDPGLGPHR-VKVTTADGGEETLDADVVLIATGASPRI  153 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEeecccCCCE-EEEEeCCCceEEEecCEEEEcCCCCCCC
Confidence            0           122344567778999998753 22221 02222 346666775  79999999999999863

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.27  E-value=8.6e-06  Score=80.99  Aligned_cols=98  Identities=15%  Similarity=0.242  Sum_probs=65.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-Ccc-----C-------------CH--------HHHHHH----H
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-ARL-----F-------------TP--------KIASYY----E   88 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-~~~-----~-------------d~--------~~~~~~----~   88 (356)
                      -.++|||||+.|+.+|..|+++|.+|+++++.+..+ ...     +             +-        ++.+.+    .
T Consensus         4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (441)
T PRK08010          4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNF   83 (441)
T ss_pred             CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Confidence            379999999999999999999999999999875321 100     0             10        001111    1


Q ss_pred             HHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc-EEecCeEEEecCCCCCch
Q 018416           89 EYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        89 ~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~~p~~~  142 (356)
                      +.+.+ .||+++.+ ++..+.   .+. ..+.+.++. ++.+|.+|+|+|.+|...
T Consensus        84 ~~~~~~~gv~~~~g-~~~~i~---~~~-~~v~~~~g~~~~~~d~lviATGs~p~~p  134 (441)
T PRK08010         84 HNLADMPNIDVIDG-QAEFIN---NHS-LRVHRPEGNLEIHGEKIFINTGAQTVVP  134 (441)
T ss_pred             HHHhhcCCcEEEEE-EEEEec---CCE-EEEEeCCCeEEEEeCEEEEcCCCcCCCC
Confidence            22333 48999876 344442   232 345566775 699999999999988653

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.27  E-value=1.7e-05  Score=80.43  Aligned_cols=136  Identities=26%  Similarity=0.314  Sum_probs=85.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc------------------------------C----------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------------F----------   79 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~------------------------------~----------   79 (356)
                      |+|+|||+|+.|+-.|..|.+.|.+|+++|+.+.+..-+                              +          
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            799999999999999999999999999999986542110                              0          


Q ss_pred             -CHHHHHHHHHHHHhCCC--EEEeCCeeeEEEEcCC----CcEEEEEeC-CCc--EEecCeEEEecCC--CCCchhh-hc
Q 018416           80 -TPKIASYYEEYYKSKGV--KFVKGTVLSSFDVDSN----GKVVAVNLR-DGN--RLPTDMVVVGIGI--RPNTSLF-EG  146 (356)
Q Consensus        80 -d~~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~----g~v~~v~~~-~g~--~i~~D~vi~a~G~--~p~~~l~-~~  146 (356)
                       ..++.++++...+..++  .+.++++|++++..++    ++- .|++. +|+  +-.+|.|++|+|.  .|+.... -.
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W-~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~  160 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKW-EVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP  160 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEE-EEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred             CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceE-EEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence             14678888888888777  5889999999987544    222 34443 343  3568999999995  4554420 11


Q ss_pred             ccccccCcEEEeccccc----CCCCEEEEccccc
Q 018416          147 QLTLEKGGIKVTGRLQS----SNSSVYAVGDVAA  176 (356)
Q Consensus       147 ~l~~~~g~I~vd~~l~t----s~~~VyAiGD~~~  176 (356)
                      +++.-+|.|.=-..++.    ...+|-.+|-..+
T Consensus       161 G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S  194 (531)
T PF00743_consen  161 GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS  194 (531)
T ss_dssp             TGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred             hhhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence            22222344443333333    3567888887654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.27  E-value=1.1e-05  Score=80.75  Aligned_cols=98  Identities=21%  Similarity=0.248  Sum_probs=68.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----CC------------------------------H-H-
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FT------------------------------P-K-   82 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-----~d------------------------------~-~-   82 (356)
                      -.++|||+|+.|+.+|..|+++|.+|+++++.+.+....     .+                              . + 
T Consensus         6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (461)
T PRK05249          6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL   85 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence            479999999999999999999999999999865432110     00                              0 0 


Q ss_pred             ----------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCCCCch
Q 018416           83 ----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        83 ----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  142 (356)
                                ..+.+.+.+++.||+++.+. +..+   +.+. ..+...+|+  ++.+|.+|+|+|.+|...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~---~~~~-~~v~~~~g~~~~~~~d~lviATGs~p~~p  152 (461)
T PRK05249         86 LARADHVINKQVEVRRGQYERNRVDLIQGR-ARFV---DPHT-VEVECPDGEVETLTADKIVIATGSRPYRP  152 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEe---cCCE-EEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence                      11223445677899999874 3333   2232 345556664  799999999999988643

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.24  E-value=1.3e-05  Score=81.90  Aligned_cols=101  Identities=20%  Similarity=0.250  Sum_probs=73.7

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------   77 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----------------------------------------   77 (356)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+...                                         
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~   89 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR   89 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence            468999999999999999999999999999988532100                                         


Q ss_pred             ---cCC-----------------HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeC--CC--cEEecCeEE
Q 018416           78 ---LFT-----------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVV  132 (356)
Q Consensus        78 ---~~d-----------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~vi  132 (356)
                         .++                 +++.+.+.+.+.+ .|++++.++++++++.++++  ..++++  +|  +++.+|+||
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v~v~~~~~~G~~~~i~ad~vV  167 (538)
T PRK06183         90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--VTVTLTDADGQRETVRARYVV  167 (538)
T ss_pred             EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--EEEEEEcCCCCEEEEEEEEEE
Confidence               000                 1122334444544 49999999999999875555  234554  56  479999999


Q ss_pred             EecCCCCCc
Q 018416          133 VGIGIRPNT  141 (356)
Q Consensus       133 ~a~G~~p~~  141 (356)
                      -|.|.+...
T Consensus       168 gADG~~S~v  176 (538)
T PRK06183        168 GCDGANSFV  176 (538)
T ss_pred             ecCCCchhH
Confidence            999987655

>PLN02697 lycopene epsilon cyclase

Probab=98.24  E-value=1.3e-05  Score=81.17  Aligned_cols=98  Identities=21%  Similarity=0.288  Sum_probs=71.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------------------------------   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-----------------------------------------   78 (356)
                      -.|+|||+|+.|+.+|..|++.|.+|.++++...+....                                         
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~  188 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR  188 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence            379999999999999999999999999998753321110                                         


Q ss_pred             CC-HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           79 FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        79 ~d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                      ++ ..+.+.+.+.+.+.|+++ .+++|+++..++++ +..+.+.+|.++.++.||.|.|..+
T Consensus       189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence            00 112244555566789998 57789998763333 3334567888999999999999876

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.24  E-value=1.4e-05  Score=77.86  Aligned_cols=97  Identities=20%  Similarity=0.310  Sum_probs=71.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------c--------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------L--------------   78 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------~--------------   78 (356)
                      .|+|||+|+.|+-+|..|++.|.+|+|+++.+.+...                            .              
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            4899999999999999999999999999987532100                            0              


Q ss_pred             -C-CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           79 -F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        79 -~-d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                       + ..++.+.+.+.+.+.|++++ ..+++.++.+ ++....+.+.+|+++.++.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence             0 01233445556677799886 5578888753 2333457778888999999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.24  E-value=4.5e-06  Score=81.97  Aligned_cols=104  Identities=17%  Similarity=0.210  Sum_probs=65.5

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC-HH-----------------HHHHHHHHHHhCCCEEEeCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT-PK-----------------IASYYEEYYKSKGVKFVKGT  102 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d-~~-----------------~~~~~~~~l~~~GV~v~~~~  102 (356)
                      +|+|||||.+|+|+|..|+++|.+|+|+++++.++.+... ..                 ....+.+.++..|..+...+
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~l~~~~a   81 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSSLIITAA   81 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCeeeeehh
Confidence            6999999999999999999999999999988775443111 01                 11234566777676555544


Q ss_pred             eeeEEEEcCCCcEE------------------EEEeCCC--cEE-ecCeEEEecCCCCCchhhhc
Q 018416          103 VLSSFDVDSNGKVV------------------AVNLRDG--NRL-PTDMVVVGIGIRPNTSLFEG  146 (356)
Q Consensus       103 ~v~~i~~~~~g~v~------------------~v~~~~g--~~i-~~D~vi~a~G~~p~~~l~~~  146 (356)
                      ....+..  .+.+.                  .+.+.++  +.+ ..|.||+|+|..|+..+.+.
T Consensus        82 d~~~Ipa--gg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~~d~VViATG~~~s~~La~~  144 (433)
T TIGR00137        82 DRHAVPA--GGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIPEEGITVIATGPLTSPALSED  144 (433)
T ss_pred             hhhCCCC--CceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEccCCeEEEeCCCCccHHHHHH
Confidence            4444321  11110                  0011112  123 46899999999998887654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.24  E-value=1.1e-05  Score=81.03  Aligned_cols=101  Identities=17%  Similarity=0.183  Sum_probs=68.4

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------cCC-HH
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFT-PK   82 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----------------------------------~~d-~~   82 (356)
                      .-+++|||||+.|+.+|..++++|++|+++++.. +...                                   .++ +.
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   82 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK   82 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            3579999999999999999999999999999852 1000                                   011 00


Q ss_pred             -----------HHHHHHHHHHhCCCEEEeCCeeeEEEEc---CCCcEEEEEeCCC--cEEecCeEEEecCCCCCc
Q 018416           83 -----------IASYYEEYYKSKGVKFVKGTVLSSFDVD---SNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        83 -----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~---~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~  141 (356)
                                 +.+...+.+++.||+++.+. ++.+...   ++.....+.+.+|  +++.+|.+|+|+|.+|+.
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~  156 (472)
T PRK05976         83 VQERKDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVE  156 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCC
Confidence                       11222345677899999874 3444321   0111245666677  579999999999999863

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.23  E-value=1.3e-05  Score=78.24  Aligned_cols=101  Identities=18%  Similarity=0.299  Sum_probs=74.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC----------------------------Ccc------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------ARL------------   78 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l----------------------------~~~------------   78 (356)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+..-                            +..            
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE   84 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence            3579999999999999999999999999999874100                            000            


Q ss_pred             ----------CC---------------HHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEE
Q 018416           79 ----------FT---------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV  132 (356)
Q Consensus        79 ----------~d---------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi  132 (356)
                                ++               ..+.+.+.+.+++. |++++.++++++++.++++  ..+.+++|+++.+|+||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI  162 (391)
T PRK08020         85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVI  162 (391)
T ss_pred             EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEE
Confidence                      00               11223344445555 9999999999999764333  45777888899999999


Q ss_pred             EecCCCCCc
Q 018416          133 VGIGIRPNT  141 (356)
Q Consensus       133 ~a~G~~p~~  141 (356)
                      .|.|..+..
T Consensus       163 ~AdG~~S~v  171 (391)
T PRK08020        163 GADGANSQV  171 (391)
T ss_pred             EeCCCCchh
Confidence            999987653

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.23  E-value=1.2e-05  Score=80.64  Aligned_cols=96  Identities=20%  Similarity=0.178  Sum_probs=65.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----C------------------------------C-HHH
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----F------------------------------T-PKI   83 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-----~------------------------------d-~~~   83 (356)
                      -.++|||+|+.|+.+|..++++|.+|+++++.+.+....     +                              | +.+
T Consensus         5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (471)
T PRK06467          5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDKM   84 (471)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence            579999999999999999999999999999865432100     0                              0 011


Q ss_pred             H-----------HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCC
Q 018416           84 A-----------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        84 ~-----------~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~  140 (356)
                      .           ..+...+++.||+++.+... -+   +... ..+...+|  +++.+|.+|+|||.+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~-~~---~~~~-v~v~~~~g~~~~~~~d~lViATGs~p~  149 (471)
T PRK06467         85 RARKEKVVKQLTGGLAGMAKGRKVTVVNGLGK-FT---GGNT-LEVTGEDGKTTVIEFDNAIIAAGSRPI  149 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec---cCCE-EEEecCCCceEEEEcCEEEEeCCCCCC
Confidence            1           11223456779999977532 22   2222 34555566  47999999999999885

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.23  E-value=1.5e-05  Score=81.41  Aligned_cols=103  Identities=18%  Similarity=0.290  Sum_probs=73.4

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------------c------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------L------   78 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------~------   78 (356)
                      ..+|+|||+|+.|+-+|..|++.|++|+++|+.+.+...                                  .      
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  102 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE  102 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence            357999999999999999999999999999988532100                                  0      


Q ss_pred             -------------------C-CHHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCc-EEecCeEEEecC
Q 018416           79 -------------------F-TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIG  136 (356)
Q Consensus        79 -------------------~-d~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G  136 (356)
                                         + ..++.+.+.+.+++. ++++++++++++++.++++....++..++. ++.+|+||.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG  182 (547)
T PRK08132        103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG  182 (547)
T ss_pred             EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence                               0 011223344445554 799999999999987544432233334554 699999999999


Q ss_pred             CCCCc
Q 018416          137 IRPNT  141 (356)
Q Consensus       137 ~~p~~  141 (356)
                      .++..
T Consensus       183 ~~S~v  187 (547)
T PRK08132        183 ARSPL  187 (547)
T ss_pred             CCcHH
Confidence            87754

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.21  E-value=9.4e-05  Score=70.91  Aligned_cols=163  Identities=15%  Similarity=0.260  Sum_probs=102.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHC----CCcEEEEeeCCccCCc--------cCCHHHH-----------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCMAR--------LFTPKIA-----------------------   84 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~----G~~Vtlv~~~~~~l~~--------~~d~~~~-----------------------   84 (356)
                      ++|.|||+|-+|.|+-..|...    ..++.++.|++.++|.        .|.|+..                       
T Consensus       188 ~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~Yk  267 (436)
T COG3486         188 RSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYK  267 (436)
T ss_pred             ceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCcccc
Confidence            4499999999999999888754    4468899999766542        1222211                       


Q ss_pred             -------HHHHHHH-H------hCCCEEEeCCeeeEEEEcCCCcEEEEEe-----CCCcEEecCeEEEecCCCCCch-hh
Q 018416           85 -------SYYEEYY-K------SKGVKFVKGTVLSSFDVDSNGKVVAVNL-----RDGNRLPTDMVVVGIGIRPNTS-LF  144 (356)
Q Consensus        85 -------~~~~~~l-~------~~GV~v~~~~~v~~i~~~~~g~v~~v~~-----~~g~~i~~D~vi~a~G~~p~~~-l~  144 (356)
                             ..+-+.| +      +..|.++.++.+++++...+|. ..+.+     .+.+++++|.||+|||.+.... ++
T Consensus       268 gI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL  346 (436)
T COG3486         268 GISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR-YRLTLRHHETGELETVETDAVILATGYRRAVPSFL  346 (436)
T ss_pred             ccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce-EEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence                   1111111 1      2468899999999999866664 23333     2335789999999999885444 44


Q ss_pred             hc---cccc-ccCcEEEecccccC--C---CCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          145 EG---QLTL-EKGGIKVTGRLQSS--N---SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       145 ~~---~l~~-~~g~I~vd~~l~ts--~---~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      +.   .+.. ++|...|+..++..  .   -.||+.|=+......  |.+   -+.-.|.+.+ ...+.++|..
T Consensus       347 ~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGi--g~p---dLsl~a~Raa-~I~~~L~g~~  414 (436)
T COG3486         347 EGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGI--GAP---DLSLGAWRAA-VILNSLLGRE  414 (436)
T ss_pred             hhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccccccc--CCc---cchHHHHHHH-HHHHHHhCcC
Confidence            32   2444 67889998766542  1   269999877654432  222   1222344444 4566777765

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.21  E-value=3.8e-06  Score=87.55  Aligned_cols=92  Identities=21%  Similarity=0.284  Sum_probs=69.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+++|+|||+|+.|+.+|..|++.|++||++++.+.+.       +. .++.++.+...+.+++.||++++++.+. .  
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~--  268 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R--  268 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C--
Confidence            45799999999999999999999999999999987652       21 1456677777788889999999887541 1  


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                             .+.+.+. ...+|.|++|+|..+.
T Consensus       269 -------dv~~~~~-~~~~DaVilAtGa~~~  291 (652)
T PRK12814        269 -------DITLEEL-QKEFDAVLLAVGAQKA  291 (652)
T ss_pred             -------ccCHHHH-HhhcCEEEEEcCCCCC
Confidence                   0112121 2359999999998754

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.21  E-value=3.5e-06  Score=87.88  Aligned_cols=91  Identities=22%  Similarity=0.332  Sum_probs=69.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+++|+|||+|+.|+.+|..|++.|++|+++++.+.+.       +. .++.++.....+.+++.||++++++.+..   
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK---  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence            46899999999999999999999999999999987642       11 14667777677788899999999986521   


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                        +     +.+.+ ....+|.|++++|..+
T Consensus       403 --~-----i~~~~-~~~~~DavilAtGa~~  424 (654)
T PRK12769        403 --D-----ISLES-LLEDYDAVFVGVGTYR  424 (654)
T ss_pred             --c-----CCHHH-HHhcCCEEEEeCCCCC
Confidence              0     11111 1236999999999754

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.20  E-value=2e-05  Score=77.25  Aligned_cols=100  Identities=15%  Similarity=0.268  Sum_probs=70.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------------   77 (356)
                      ++|+|||||+.|+-+|..|++.|.+|+++|+.+.+...                                          
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            78999999999999999999999999999987542100                                          


Q ss_pred             -cCC--------------------HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEe---CCCcEEecCeEE
Q 018416           78 -LFT--------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVV  132 (356)
Q Consensus        78 -~~d--------------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~vi  132 (356)
                       .+.                    .++.+.+.+.+.+ .++++++++++++++.++++  ..+++   .+++++.+|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~~~~~~~~adlvI  160 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRTNSVETVSAAYLI  160 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeCCCCcEEecCEEE
Confidence             000                    1122333344433 47999999999999764333  23444   334679999999


Q ss_pred             EecCCCCCc
Q 018416          133 VGIGIRPNT  141 (356)
Q Consensus       133 ~a~G~~p~~  141 (356)
                      -|-|.....
T Consensus       161 gADG~~S~v  169 (400)
T PRK06475        161 ACDGVWSML  169 (400)
T ss_pred             ECCCccHhH
Confidence            999976543

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.19  E-value=1.8e-05  Score=76.95  Aligned_cols=99  Identities=13%  Similarity=0.240  Sum_probs=71.7

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC----ccCC--c--cC---------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA----HCMA--R--LF---------------------------------   79 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~----~~l~--~--~~---------------------------------   79 (356)
                      +|+|||||+.|+-+|..|++.|.+|+|+|+.+    .+.+  +  .+                                 
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   82 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK   82 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence            69999999999999999999999999999752    1000  0  00                                 


Q ss_pred             --------------------CHHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           80 --------------------TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        80 --------------------d~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                                          -.++.+.+.+.+.+. +++++.+++++++..++++  ..+.++++ ++.+|+||-|-|..
T Consensus        83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~  159 (374)
T PRK06617         83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN  159 (374)
T ss_pred             CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence                                012333444555555 4899999999998764443  34777666 89999999999987


Q ss_pred             CCch
Q 018416          139 PNTS  142 (356)
Q Consensus       139 p~~~  142 (356)
                      ....
T Consensus       160 S~vR  163 (374)
T PRK06617        160 SKVR  163 (374)
T ss_pred             chhH
Confidence            6553

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.19  E-value=3.9e-06  Score=80.60  Aligned_cols=117  Identities=22%  Similarity=0.324  Sum_probs=70.0

Q ss_pred             CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCCccCCc--------cCCHHH--
Q 018416           16 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMAR--------LFTPKI--   83 (356)
Q Consensus        16 ~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~~~l~~--------~~d~~~--   83 (356)
                      ++|++..++.....  .   ...+++|+|||||-+|.|++..|.+.+.  +|+++.|++.+.+.        .++|+.  
T Consensus       172 ~~v~Hss~~~~~~~--~---~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~  246 (341)
T PF13434_consen  172 PRVFHSSEYLSRID--Q---SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVD  246 (341)
T ss_dssp             TTEEEGGGHHHHHT----------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHH
T ss_pred             CCEEEehHhhhccc--c---ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhh
Confidence            67887655433321  1   1267999999999999999999999875  89999998765331        233332  


Q ss_pred             -----------------------------HHHHHHH-----H-HhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC---C--
Q 018416           84 -----------------------------ASYYEEY-----Y-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--  123 (356)
Q Consensus        84 -----------------------------~~~~~~~-----l-~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--  123 (356)
                                                   .+.+.+.     + .+..++++.++.|++++.+++|.+ .+.+.+   +  
T Consensus       247 ~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~~~~~~~  325 (341)
T PF13434_consen  247 YFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRHRQTGEE  325 (341)
T ss_dssp             HHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEETTT--E
T ss_pred             hhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEECCCCCe
Confidence                                         2222111     1 223578999999999988665443 344443   2  


Q ss_pred             cEEecCeEEEecCCC
Q 018416          124 NRLPTDMVVVGIGIR  138 (356)
Q Consensus       124 ~~i~~D~vi~a~G~~  138 (356)
                      .++++|.||+|||++
T Consensus       326 ~~~~~D~VilATGy~  340 (341)
T PF13434_consen  326 ETLEVDAVILATGYR  340 (341)
T ss_dssp             EEEEESEEEE---EE
T ss_pred             EEEecCEEEEcCCcc
Confidence            468999999999974

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.19  E-value=1.6e-05  Score=78.06  Aligned_cols=101  Identities=20%  Similarity=0.275  Sum_probs=72.6

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC-CccC------Cc--cCCH----------------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCM------AR--LFTP----------------------------   81 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~-~~~l------~~--~~d~----------------------------   81 (356)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+. +...      .+  .+.+                            
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   83 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV   83 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence            358999999999999999999999999999985 2100      00  0000                            


Q ss_pred             ----------------------------HHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEE
Q 018416           82 ----------------------------KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV  132 (356)
Q Consensus        82 ----------------------------~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi  132 (356)
                                                  .+...+.+.+.+ .||+++.++++++++.++++  ..+.+++|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI  161 (405)
T PRK08850         84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV  161 (405)
T ss_pred             EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence                                        011223333334 47999999999999764333  45778899999999999


Q ss_pred             EecCCCCCc
Q 018416          133 VGIGIRPNT  141 (356)
Q Consensus       133 ~a~G~~p~~  141 (356)
                      .|.|.....
T Consensus       162 gADG~~S~v  170 (405)
T PRK08850        162 GADGANSWL  170 (405)
T ss_pred             EeCCCCChh
Confidence            999976543

>PRK10015 oxidoreductase; Provisional

Probab=98.18  E-value=2.2e-05  Score=77.81  Aligned_cols=98  Identities=17%  Similarity=0.325  Sum_probs=72.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC------------------Ccc-----------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------ARL-----------------------   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l------------------~~~-----------------------   78 (356)
                      -.|+|||||+.|+-+|..|++.|.+|+++|+.+.+.                  +.+                       
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA   85 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence            479999999999999999999999999999875321                  100                       


Q ss_pred             --CC------------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           79 --FT------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        79 --~d------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                        ++                  ..+-+.+.+..++.|++++.+++|+.+.. +++.+..+. .++.++.+|.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~-~~~~~i~A~~VI~AdG~~  163 (429)
T PRK10015         86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQ-AGDDILEANVVILADGVN  163 (429)
T ss_pred             eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEE-eCCeEEECCEEEEccCcc
Confidence              00                  01122355666778999999999999875 345554444 345689999999999975


Q ss_pred             C
Q 018416          139 P  139 (356)
Q Consensus       139 p  139 (356)
                      .
T Consensus       164 s  164 (429)
T PRK10015        164 S  164 (429)
T ss_pred             h
Confidence            3

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.18  E-value=1.8e-05  Score=79.09  Aligned_cols=96  Identities=22%  Similarity=0.294  Sum_probs=65.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------cCC-HHH
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFT-PKI   83 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----------------------------------~~d-~~~   83 (356)
                      -+++|||+|+.|+.+|..++++|.+|+|+++.+ +...                                   .++ .++
T Consensus         5 yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   83 (462)
T PRK06416          5 YDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKV   83 (462)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHH
Confidence            369999999999999999999999999999864 2110                                   001 111


Q ss_pred             HHH-----------HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-CcEEecCeEEEecCCCCCc
Q 018416           84 ASY-----------YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        84 ~~~-----------~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~vi~a~G~~p~~  141 (356)
                      .+.           +...+++.||+++.++. +.++   ... ..+...+ ++++.+|.+|+|+|.+|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~~---~~~-~~v~~~~~~~~~~~d~lViAtGs~p~~  148 (462)
T PRK06416         84 QEWKNGVVNRLTGGVEGLLKKNKVDIIRGEA-KLVD---PNT-VRVMTEDGEQTYTAKNIILATGSRPRE  148 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEcc---CCE-EEEecCCCcEEEEeCEEEEeCCCCCCC
Confidence            112           44456778999998753 3332   222 2344323 4679999999999999863

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.18  E-value=6.6e-06  Score=81.72  Aligned_cols=92  Identities=12%  Similarity=0.166  Sum_probs=62.8

Q ss_pred             CCCcEEEECCchHHHHHHHHH-HHCCCcEEEEeeCCccCCcc------CC---HHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416           38 SGGNAVVIGGGYIGMECAASL-VINKINVTMVFPEAHCMARL------FT---PKIASYYEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L-~~~G~~Vtlv~~~~~~l~~~------~d---~~~~~~~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      .+++|+|||+|+.|+++|..| ++.|++|+++++.+.+..-.      ..   ..+...+.+.+...+++++.+..+.. 
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~-  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV-  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence            478999999999999999975 46799999999998874210      11   23445555556678888875544321 


Q ss_pred             EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416          108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus       108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                               .+..++ -.-.+|.||+|+|..+.
T Consensus       117 ---------Dvt~ee-L~~~YDAVIlAtGA~~l  139 (506)
T PTZ00188        117 ---------DLKMEE-LRNHYNCVIFCCGASEV  139 (506)
T ss_pred             ---------ccCHHH-HHhcCCEEEEEcCCCCC
Confidence                     111111 12369999999997753

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.17  E-value=1.3e-05  Score=79.90  Aligned_cols=94  Identities=20%  Similarity=0.388  Sum_probs=66.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc------------------------------------CC-H-
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------------------FT-P-   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~------------------------------------~d-~-   81 (356)
                      -.++|||+|+.|+.+|..++++|.+|+++++.. +....                                    ++ + 
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (450)
T TIGR01421         3 YDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPE   81 (450)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHH
Confidence            369999999999999999999999999999852 11100                                    11 0 


Q ss_pred             ----------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           82 ----------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        82 ----------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                                .+.+.+...+++.||+++.++..  +.  ++..   ++. +++.+.+|.+|+|+|.+|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~--~~--~~~~---v~v-~~~~~~~d~vIiAtGs~p~~p  144 (450)
T TIGR01421        82 LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR--FT--KDGT---VEV-NGRDYTAPHILIATGGKPSFP  144 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE--Ec--cCCE---EEE-CCEEEEeCEEEEecCCCCCCC
Confidence                      12223455677889999988653  22  2332   333 567899999999999998654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.16  E-value=2.6e-05  Score=76.01  Aligned_cols=100  Identities=25%  Similarity=0.282  Sum_probs=72.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------   77 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----------------------------------------   77 (356)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+...                                         
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~   86 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL   86 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence            357999999999999999999999999999987432000                                         


Q ss_pred             ------cCC---------------HHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEec
Q 018416           78 ------LFT---------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  135 (356)
Q Consensus        78 ------~~d---------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  135 (356)
                            .++               ..+.+.+.+.+.+. ++. +.++++++++.++++  ..+++++|+++.+|.||.|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~Ad  163 (388)
T PRK07494         87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLADGTTLSARLVVGAD  163 (388)
T ss_pred             CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEECCCCEEEEeEEEEec
Confidence                  000               11233344455554 466 779999999764433  34778888899999999999


Q ss_pred             CCCCCc
Q 018416          136 GIRPNT  141 (356)
Q Consensus       136 G~~p~~  141 (356)
                      |..+..
T Consensus       164 G~~S~v  169 (388)
T PRK07494        164 GRNSPV  169 (388)
T ss_pred             CCCchh
Confidence            987543

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.14  E-value=2.8e-05  Score=76.31  Aligned_cols=100  Identities=20%  Similarity=0.311  Sum_probs=75.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----------------CC----------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------FT----------------------   80 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-----------------~d----------------------   80 (356)
                      -.|+|||+|+.|.-+|..|++.|.+|.++|+++.+..+.                 .+                      
T Consensus         4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~   83 (396)
T COG0644           4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE   83 (396)
T ss_pred             eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence            369999999999999999999999999999975442110                 11                      


Q ss_pred             -----------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           81 -----------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        81 -----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                                 ...-+.+.+..++.|++++.+++++.+..++++.+..+ ..++.++.++.||.|.|.+..
T Consensus        84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s~  153 (396)
T COG0644          84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNSA  153 (396)
T ss_pred             cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcchH
Confidence                       11233456667789999999999999987555554433 344478999999999996543

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.14  E-value=2.5e-05  Score=79.74  Aligned_cols=96  Identities=21%  Similarity=0.272  Sum_probs=70.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC-ccC--C---c------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA-HCM--A---R------------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~-~~l--~---~------------------------------------   77 (356)
                      -.|+|||||+.|+++|..+++.|.+|.++++.. .+.  +   .                                    
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~   84 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT   84 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence            369999999999999999999999999999873 210  0   0                                    


Q ss_pred             -----------cCCHH-HHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416           78 -----------LFTPK-IASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        78 -----------~~d~~-~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                                 .+|.. ....+.+.+++. |++++ ...++++.. +++.+..|.+.+|..+.|+.||+|+|.
T Consensus        85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT  155 (618)
T PRK05192         85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT  155 (618)
T ss_pred             CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence                       00110 123344445544 88886 556777765 467777888999999999999999994

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.14  E-value=2.7e-05  Score=84.83  Aligned_cols=101  Identities=18%  Similarity=0.209  Sum_probs=71.6

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc------C----CHHHHHHHHHHHHhC-CCEEEeCCeeeEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------F----TPKIASYYEEYYKSK-GVKFVKGTVLSSF  107 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~------~----d~~~~~~~~~~l~~~-GV~v~~~~~v~~i  107 (356)
                      .++|+|||||+.|+.+|..+++.|.+|+|++..+.+....      .    ..+....+.+.+++. +|++++++.|..+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i  242 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY  242 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence            4679999999999999999999999999999876653211      1    123434555666666 5999999999887


Q ss_pred             EEcCCCcEEEEE-eC-------CC------cEEecCeEEEecCCCCCc
Q 018416          108 DVDSNGKVVAVN-LR-------DG------NRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       108 ~~~~~g~v~~v~-~~-------~g------~~i~~D~vi~a~G~~p~~  141 (356)
                      ..  ++.+..+. ..       ++      .++.+|.||+|+|.+|..
T Consensus       243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~  288 (985)
T TIGR01372       243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP  288 (985)
T ss_pred             ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence            52  22222221 00       11      268999999999988754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06185 hypothetical protein; Provisional

Probab=98.11  E-value=4.7e-05  Score=74.64  Aligned_cols=101  Identities=23%  Similarity=0.354  Sum_probs=71.7

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC----------------------c-------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------R-------------------   77 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~----------------------~-------------------   77 (356)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..                      .                   
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR   85 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence            45899999999999999999999999999998743100                      0                   


Q ss_pred             ---c--C--------------CHHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEE--EeCCCc-EEecCeEEEe
Q 018416           78 ---L--F--------------TPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAV--NLRDGN-RLPTDMVVVG  134 (356)
Q Consensus        78 ---~--~--------------d~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v--~~~~g~-~i~~D~vi~a  134 (356)
                         .  +              ...+.+.+.+.+++ .|++++.++++++++.+ ++.+..+  ...+|+ ++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A  164 (407)
T PRK06185         86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA  164 (407)
T ss_pred             EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence               0  0              01122333444444 48999999999999763 4544333  344664 7999999999


Q ss_pred             cCCCCC
Q 018416          135 IGIRPN  140 (356)
Q Consensus       135 ~G~~p~  140 (356)
                      .|....
T Consensus       165 dG~~S~  170 (407)
T PRK06185        165 DGRHSR  170 (407)
T ss_pred             CCCchH
Confidence            997653

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.10  E-value=1.8e-05  Score=78.00  Aligned_cols=98  Identities=18%  Similarity=0.242  Sum_probs=69.4

Q ss_pred             cEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCccCCcc----CCH-------------HH-------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMARL----FTP-------------KI-------------------   83 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~l~~~----~d~-------------~~-------------------   83 (356)
                      +|+|||||+.|+-+|..|++.| .+|+|+|+.+.+....    +.+             .+                   
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6999999999999999999998 5999999986542100    000             00                   


Q ss_pred             ----------------------HHHHHHHHHh--CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           84 ----------------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        84 ----------------------~~~~~~~l~~--~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                                            ...+.+.|.+  .++.+++++++++++.++++  ..+.+.+|+++++|.||.|.|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence                                  0112222222  14567889999999864444  467788999999999999999765


Q ss_pred             C
Q 018416          140 N  140 (356)
Q Consensus       140 ~  140 (356)
                      .
T Consensus       160 ~  160 (414)
T TIGR03219       160 A  160 (414)
T ss_pred             H
Confidence            4

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.09  E-value=2.8e-05  Score=77.90  Aligned_cols=96  Identities=26%  Similarity=0.371  Sum_probs=63.8

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----CCH-----------------------------HHH-
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FTP-----------------------------KIA-   84 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-----~d~-----------------------------~~~-   84 (356)
                      -.++|||+|+.|+.+|..++++|.+|+++++.+.+....     .+.                             ++. 
T Consensus         4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   83 (466)
T PRK06115          4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQ   83 (466)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHH
Confidence            379999999999999999999999999999743221110     000                             000 


Q ss_pred             -------------HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCCCC
Q 018416           85 -------------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPN  140 (356)
Q Consensus        85 -------------~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~  140 (356)
                                   ..++..+++.||+++.+.  .++.  ++.++ .+...+|+  ++++|.+|+|||.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--a~~~--~~~~v-~v~~~~g~~~~~~~d~lVIATGs~p~  149 (466)
T PRK06115         84 MMKQKDESVEALTKGVEFLFRKNKVDWIKGW--GRLD--GVGKV-VVKAEDGSETQLEAKDIVIATGSEPT  149 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE--EEEc--cCCEE-EEEcCCCceEEEEeCEEEEeCCCCCC
Confidence                         112233455678887665  2443  23332 35555664  6999999999999985

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.09  E-value=0.0001  Score=72.16  Aligned_cols=152  Identities=18%  Similarity=0.212  Sum_probs=103.2

Q ss_pred             ECCchHHHHHHHHHH-HCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC
Q 018416           45 IGGGYIGMECAASLV-INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG  123 (356)
Q Consensus        45 vGgG~iGlE~A~~L~-~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g  123 (356)
                      .|-+.- .++-..|. +.|+.|.-+-..   -|......+.+.+.+.+++.|++++.++.|.++.. +++++..+.+.++
T Consensus       230 lG~~~~-~~~~~~L~~~~g~~v~E~ptl---PPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g  304 (419)
T TIGR03378       230 FGLGDG-LELLRELEQATGLTLCELPTM---PPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNH  304 (419)
T ss_pred             eCCCCh-HHHHHHHHHHHCCCEEeCCCC---CCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCC
Confidence            454432 23333443 348887766433   33445788999999999999999999999999886 4566666776665


Q ss_pred             --cEEecCeEEEecCCC-CCchhhhc-----------cc-------cc-----------ccCcEEEeccccc-----CCC
Q 018416          124 --NRLPTDMVVVGIGIR-PNTSLFEG-----------QL-------TL-----------EKGGIKVTGRLQS-----SNS  166 (356)
Q Consensus       124 --~~i~~D~vi~a~G~~-p~~~l~~~-----------~l-------~~-----------~~g~I~vd~~l~t-----s~~  166 (356)
                        ..+.+|.+|+|+|.- ++ .|.+.           .+       .+           -.=+|.+|+++|.     ..+
T Consensus       305 ~~~~l~AD~vVLAaGaw~S~-gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~  383 (419)
T TIGR03378       305 RDIPLRADHFVLASGSFFSN-GLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIE  383 (419)
T ss_pred             ccceEECCEEEEccCCCcCH-HHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccc
Confidence              479999999999976 32 22110           00       00           1236889999994     389


Q ss_pred             CEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          167 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       167 ~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      |+||+|-+...++++.-.    -....|+..|..||++|+
T Consensus       384 Nl~a~G~vL~G~d~~~~g----cG~GVai~Ta~~aa~~i~  419 (419)
T TIGR03378       384 NLYAIGAVLGGYDPIFEG----CGSGVAVSTALHAAEQII  419 (419)
T ss_pred             cceEechhhcCCChHhcC----CCchhHHHHHHHHHHhhC
Confidence            999999999988764211    123467788888888763

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.08  E-value=1.8e-05  Score=76.88  Aligned_cols=94  Identities=18%  Similarity=0.323  Sum_probs=65.5

Q ss_pred             cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCc----c----CCHHHHH-------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR----L----FTPKIAS-------------------------   85 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~----~----~d~~~~~-------------------------   85 (356)
                      .++|||||+.|+.+|..|++.  |.+|.++++.+.+.+.    +    +++....                         
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            489999999999999999987  9999999998754321    1    1211111                         


Q ss_pred             ---------HHHHH-HHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           86 ---------YYEEY-YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        86 ---------~~~~~-l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                               .+.+. +++.+..++++++|++++.  ++    +.+.+|+++.+|.||.|.|.++.
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~----v~l~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DG----VDLAPGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CE----EEECCCCEEEeeEEEECCCCCCC
Confidence                     11122 2222444777888888842  32    44578999999999999998764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR00275 flavoprotein, HI0933 family

Probab=98.08  E-value=3.6e-05  Score=75.60  Aligned_cols=94  Identities=18%  Similarity=0.321  Sum_probs=70.3

Q ss_pred             EEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------cC---------------------
Q 018416           43 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------LF---------------------   79 (356)
Q Consensus        43 vVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------~~---------------------   79 (356)
                      +|||||+.|+-+|..+++.|.+|+|+|+.+.+...                      .+                     
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            59999999999999999999999999987643210                      00                     


Q ss_pred             -----------------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecC
Q 018416           80 -----------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  136 (356)
Q Consensus        80 -----------------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G  136 (356)
                                             ..++.+.+.+.+++.|+++++++.+++++.+ ++. ..+++ +++++.+|.||+|+|
T Consensus        81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~VIlAtG  157 (400)
T TIGR00275        81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADKVILATG  157 (400)
T ss_pred             HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCEEEECCC
Confidence                                   0123344556677789999999999999763 332 34555 567899999999999


Q ss_pred             CCC
Q 018416          137 IRP  139 (356)
Q Consensus       137 ~~p  139 (356)
                      ...
T Consensus       158 ~~s  160 (400)
T TIGR00275       158 GLS  160 (400)
T ss_pred             Ccc
Confidence            653

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.07  E-value=4.3e-05  Score=74.49  Aligned_cols=99  Identities=18%  Similarity=0.262  Sum_probs=71.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHC---CCcEEEEeeCCcc---CCc--------------------c---------------
Q 018416           40 GNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHC---MAR--------------------L---------------   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~---G~~Vtlv~~~~~~---l~~--------------------~---------------   78 (356)
                      -+|+|||+|+.|+-+|..|++.   |.+|+|+|+....   .+.                    .               
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   83 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH   83 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence            5799999999999999999998   9999999994100   000                    0               


Q ss_pred             -----------CC---------------HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeE
Q 018416           79 -----------FT---------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV  131 (356)
Q Consensus        79 -----------~d---------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~v  131 (356)
                                 +.               .++.+.+.+.+.+ .|++++.+++++++..++++  ..+.+++|..+.+|.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~v  161 (395)
T PRK05732         84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTLDDGETLTGRLL  161 (395)
T ss_pred             EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence                       00               0112233444444 47999999999999763333  3477788888999999


Q ss_pred             EEecCCCCC
Q 018416          132 VVGIGIRPN  140 (356)
Q Consensus       132 i~a~G~~p~  140 (356)
                      |.|.|....
T Consensus       162 I~AdG~~S~  170 (395)
T PRK05732        162 VAADGSHSA  170 (395)
T ss_pred             EEecCCChh
Confidence            999998764

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.07  E-value=6e-05  Score=73.73  Aligned_cols=100  Identities=17%  Similarity=0.186  Sum_probs=72.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC--Cc----------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--AR----------------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l--~~----------------------------------------   77 (356)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+|+.+...  ..                                        
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            579999999999999999999999999999886410  00                                        


Q ss_pred             --c--C-------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEE-cCCCcEEEEEe-CCCc--EEecCeEEEecC
Q 018416           78 --L--F-------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNL-RDGN--RLPTDMVVVGIG  136 (356)
Q Consensus        78 --~--~-------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~-~~~g~v~~v~~-~~g~--~i~~D~vi~a~G  136 (356)
                        .  +             .+++.+.+.+...+.|+++++++++++++. ++++  ..+++ .+|+  ++.+|+||-|-|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~~V~~~~~G~~~~i~ad~vVgADG  160 (392)
T PRK08243         83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR--PYVTYEKDGEEHRLDCDFIAGCDG  160 (392)
T ss_pred             EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--eEEEEEcCCeEEEEEeCEEEECCC
Confidence              0  0             012223344444667999999999999875 2222  34555 4664  689999999999


Q ss_pred             CCCCc
Q 018416          137 IRPNT  141 (356)
Q Consensus       137 ~~p~~  141 (356)
                      .+...
T Consensus       161 ~~S~v  165 (392)
T PRK08243        161 FHGVS  165 (392)
T ss_pred             CCCch
Confidence            87654

>PRK06370 mercuric reductase; Validated

Probab=98.05  E-value=2.6e-05  Score=78.10  Aligned_cols=95  Identities=21%  Similarity=0.292  Sum_probs=65.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc---cC-----Cc---------------------------cCCH-HH
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH---CM-----AR---------------------------LFTP-KI   83 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~---~l-----~~---------------------------~~d~-~~   83 (356)
                      -.++|||+|+.|+.+|..++++|++|+++++.+.   ++     |.                           .+|- ++
T Consensus         6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   85 (463)
T PRK06370          6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFKAV   85 (463)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHHHH
Confidence            5799999999999999999999999999998520   00     00                           0111 11


Q ss_pred             -----------HHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           84 -----------ASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        84 -----------~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                                 ...+.+.+++. ||+++.++.+. +   ++.   .++. +++++.+|.+|+|+|.+|...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~-~---~~~---~v~v-~~~~~~~d~lViATGs~p~~p  148 (463)
T PRK06370         86 MARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF-E---SPN---TVRV-GGETLRAKRIFINTGARAAIP  148 (463)
T ss_pred             HHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE-c---cCC---EEEE-CcEEEEeCEEEEcCCCCCCCC
Confidence                       12234556666 99999887542 1   222   2333 467899999999999998754

>PRK13984 putative oxidoreductase; Provisional

Probab=98.05  E-value=1.2e-05  Score=83.11  Aligned_cols=91  Identities=18%  Similarity=0.169  Sum_probs=69.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      ++++++|||+|+.|+.+|..|+++|.+|+++++.+.+.       +. .+..++.....+.+++.|+++++++.+..-  
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~--  359 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD--  359 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence            57889999999999999999999999999999887642       11 135566666667889999999999876320  


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                              +.+.+ ...++|.||+|+|..+
T Consensus       360 --------~~~~~-~~~~yD~vilAtGa~~  380 (604)
T PRK13984        360 --------IPLEE-LREKHDAVFLSTGFTL  380 (604)
T ss_pred             --------CCHHH-HHhcCCEEEEEcCcCC
Confidence                    11111 2357999999999763

>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A

Probab=98.04  E-value=9.4e-05  Score=56.23  Aligned_cols=75  Identities=24%  Similarity=0.333  Sum_probs=59.2

Q ss_pred             eEEEEecCceEEEeeccc--ceEEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhc
Q 018416          219 FFYSRVFTLSWQFYGDNV--GEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ  295 (356)
Q Consensus       219 ~~~~~~~~~~~~~~G~~~--~~~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~  295 (356)
                      |||+.+|+..++++|...  ++.+..|+.+..+|..++.++|+++|+..+|. +.++..+..+|+.+..++ ...|.++
T Consensus         1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~vn~-~~~~~~~rrli~~~~~~~-~~~l~d~   77 (85)
T PF14759_consen    1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVSVNR-PRDLRAARRLIAAGARVD-PARLADP   77 (85)
T ss_dssp             EEEEEETTEEEEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B---HHHHHST
T ss_pred             CeecccCCCeEEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEecCC-HHHHHHHHHHHHCCCCcC-HHHhcCC
Confidence            689999999999999754  56778888777779999999999999999994 778888899999998775 4555533

...

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.04  E-value=0.00012  Score=72.93  Aligned_cols=137  Identities=25%  Similarity=0.341  Sum_probs=88.7

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCccCCc---------------------c--C--------CHHHHHH
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMAR---------------------L--F--------TPKIASY   86 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~~l~~---------------------~--~--------d~~~~~~   86 (356)
                      ..+|+|||+|+.|+-+|..|.+.|.. +.++|+++.+...                     +  +        -+++.+.
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y   87 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY   87 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence            46899999999999999999999999 9999998543100                     0  1        0226777


Q ss_pred             HHHHHHhCCCE--EEeCCeeeEEEEcCCCcEEEEEeCCCcE--EecCeEEEecCC--CCCchhhhcccccccCcEEE---
Q 018416           87 YEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGI--RPNTSLFEGQLTLEKGGIKV---  157 (356)
Q Consensus        87 ~~~~l~~~GV~--v~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~vi~a~G~--~p~~~l~~~~l~~~~g~I~v---  157 (356)
                      +...+++.++.  +..++.|+.+..++++..-.|.++++.+  +.+|.||+|+|.  .|+..-+.. ...-.|.+.=   
T Consensus        88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G-~~~f~g~~~HS~~  166 (443)
T COG2072          88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAG-LDEFKGRILHSAD  166 (443)
T ss_pred             HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCC-ccCCCceEEchhc
Confidence            88888876654  4455666666665666556677777765  559999999995  344332221 1111222221   


Q ss_pred             -ecccccCCCCEEEEccccc
Q 018416          158 -TGRLQSSNSSVYAVGDVAA  176 (356)
Q Consensus       158 -d~~l~ts~~~VyAiGD~~~  176 (356)
                       .+...-.-.+|-+||--++
T Consensus       167 ~~~~~~~~GKrV~VIG~GaS  186 (443)
T COG2072         167 WPNPEDLRGKRVLVIGAGAS  186 (443)
T ss_pred             CCCccccCCCeEEEECCCcc
Confidence             1122334577888886655

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.02  E-value=6.7e-05  Score=74.93  Aligned_cols=57  Identities=25%  Similarity=0.540  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      ..+.|.+..+++||+++.++ |+.+..+++|.+..|++++|+++++|++|=|+|++..
T Consensus       156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  156 FDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            44556777788999999885 7777766788899999999999999999999998643

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.02  E-value=1.5e-05  Score=81.82  Aligned_cols=91  Identities=21%  Similarity=0.191  Sum_probs=67.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--------ccCCHHHHHHHHHHHHhCCCEEEeCCee-eEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------RLFTPKIASYYEEYYKSKGVKFVKGTVL-SSFD  108 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--------~~~d~~~~~~~~~~l~~~GV~v~~~~~v-~~i~  108 (356)
                      .+++|+|||+|++|+.+|..|+++|.+|+++++.+.+..        ..++.+..+.-.+.+++.|++++.++.+ ..+.
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~  215 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT  215 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence            578999999999999999999999999999998776421        1145556665566778899999988765 3221


Q ss_pred             EcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416          109 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus       109 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      .           . .....+|.|++++|..+.
T Consensus       216 ~-----------~-~~~~~~D~Vi~AtG~~~~  235 (564)
T PRK12771        216 L-----------E-QLEGEFDAVFVAIGAQLG  235 (564)
T ss_pred             H-----------H-HHHhhCCEEEEeeCCCCC
Confidence            1           0 011248999999998654

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.02  E-value=6.1e-05  Score=74.82  Aligned_cols=102  Identities=25%  Similarity=0.347  Sum_probs=73.8

Q ss_pred             cEEEECCchHHHHHHHHHHH----CCCcEEEEeeCC--ccC------------Cc-------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVI----NKINVTMVFPEA--HCM------------AR-------------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~----~G~~Vtlv~~~~--~~l------------~~-------------------------   77 (356)
                      .|+|||||++|+-+|..|++    .|++|+|+|+.+  ...            ++                         
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~   81 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR   81 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence            58999999999999999998    799999999832  210            00                         


Q ss_pred             ------------------cCC--------------HHHHHHHHHHHHhCC---CEEEeCCeeeEEEEc-----CCCcEEE
Q 018416           78 ------------------LFT--------------PKIASYYEEYYKSKG---VKFVKGTVLSSFDVD-----SNGKVVA  117 (356)
Q Consensus        78 ------------------~~d--------------~~~~~~~~~~l~~~G---V~v~~~~~v~~i~~~-----~~g~v~~  117 (356)
                                        .++              ..+.+.+.+.+++.+   |+++.++++++++..     +++....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~  161 (437)
T TIGR01989        82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH  161 (437)
T ss_pred             CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence                              000              112333455556654   999999999999641     1233356


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCch
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +++.+|+++.+|+||-|-|......
T Consensus       162 v~~~~g~~i~a~llVgADG~~S~vR  186 (437)
T TIGR01989       162 ITLSDGQVLYTKLLIGADGSNSNVR  186 (437)
T ss_pred             EEEcCCCEEEeeEEEEecCCCChhH
Confidence            7888999999999999999876553

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.02  E-value=8.8e-05  Score=75.70  Aligned_cols=98  Identities=15%  Similarity=0.264  Sum_probs=71.5

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC------------------Cc-------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------AR-------------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l------------------~~-------------------------   77 (356)
                      .|+|||+|++|+++|..+++.|.+|+++++.....                  ..                         
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s   81 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS   81 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence            48999999999999999999999999999753110                  00                         


Q ss_pred             ----------cCCH-HHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           78 ----------LFTP-KIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        78 ----------~~d~-~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                                .+|+ .....+.+.+++. +++++.+ .++++..++++.+..|.+.+|..+.||.||+|+|.-.
T Consensus        82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence                      0011 1123455556665 7888755 5666654336778889999999999999999999764

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.01  E-value=7.5e-05  Score=73.05  Aligned_cols=50  Identities=16%  Similarity=0.312  Sum_probs=37.6

Q ss_pred             HHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           88 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        88 ~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      .+.+++.|++++.++.+++++.. ++.+ .+.+.++ ++.+|.||+|+|....
T Consensus       156 ~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g-~i~ad~vV~A~G~~s~  205 (393)
T PRK11728        156 AELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQG-EYEARTLINCAGLMSD  205 (393)
T ss_pred             HHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCC-EEEeCEEEECCCcchH
Confidence            34456679999999999998763 3333 4666666 7999999999997653

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.00  E-value=0.00011  Score=74.54  Aligned_cols=106  Identities=15%  Similarity=0.198  Sum_probs=78.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------------------------------------cCC-
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------LFT-   80 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------------------------------------~~d-   80 (356)
                      -.|||||+|..|+-+|..+++.|.+|.|+|+.+.+...                                      ..| 
T Consensus        62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d~  141 (506)
T PRK06481         62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTNDK  141 (506)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            36999999999999999999999999999987542100                                      000 


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCC
Q 018416           81 ------------------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN  112 (356)
Q Consensus        81 ------------------------------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~  112 (356)
                                                                      ..+...+.+.+++.||++++++.++++.. ++
T Consensus       142 ~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~  220 (506)
T PRK06481        142 ALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITE-KD  220 (506)
T ss_pred             HHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cC
Confidence                                                            12334455566778999999999999976 46


Q ss_pred             CcEEEEEe--CCC--cEEecCeEEEecC-CCCCchhhhc
Q 018416          113 GKVVAVNL--RDG--NRLPTDMVVVGIG-IRPNTSLFEG  146 (356)
Q Consensus       113 g~v~~v~~--~~g--~~i~~D~vi~a~G-~~p~~~l~~~  146 (356)
                      +++..+..  .++  .++.++.||+|+| +.+|.++...
T Consensus       221 g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~  259 (506)
T PRK06481        221 GKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK  259 (506)
T ss_pred             CEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence            76665554  343  3589999999998 7778776654

>PRK09897 hypothetical protein; Provisional

Probab=97.99  E-value=0.00011  Score=74.67  Aligned_cols=99  Identities=11%  Similarity=0.171  Sum_probs=67.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccCCc----------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMAR----------------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l~~----------------------------------------   77 (356)
                      ++|+|||+|+.|+-+|..|.+.+  .+|+|+++.+.+...                                        
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            58999999999999999998865  489999996443211                                        


Q ss_pred             --------------c-----CCHHHHHH---HHHHHHhCC--CEEEeCCeeeEEEEcCCCcEEEEEeCC-CcEEecCeEE
Q 018416           78 --------------L-----FTPKIASY---YEEYYKSKG--VKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVV  132 (356)
Q Consensus        78 --------------~-----~d~~~~~~---~~~~l~~~G--V~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~vi  132 (356)
                                    +     +...+...   +.+.+.+.|  ++++.+++|++++..+++  ..+.+.+ +..+.+|.||
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV  159 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV  159 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence                          0     00011111   222334455  788889999999874433  3466655 4789999999


Q ss_pred             EecCCCCC
Q 018416          133 VGIGIRPN  140 (356)
Q Consensus       133 ~a~G~~p~  140 (356)
                      +|+|..++
T Consensus       160 LAtGh~~p  167 (534)
T PRK09897        160 IATGHVWP  167 (534)
T ss_pred             ECCCCCCC
Confidence            99997554

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.99  E-value=9e-05  Score=72.70  Aligned_cols=57  Identities=21%  Similarity=0.404  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcE-EecCeEEEecCCCCC
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPN  140 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~-i~~D~vi~a~G~~p~  140 (356)
                      +...+.+.++++|++++++++|+.++..++| +..+.+.+|++ ++|+.||.|.|....
T Consensus       155 ~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad  212 (429)
T COG0579         155 LTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD  212 (429)
T ss_pred             HHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH
Confidence            3455667778889999999999999986665 56677888877 999999999996543

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.99  E-value=6.4e-06  Score=81.62  Aligned_cols=96  Identities=19%  Similarity=0.312  Sum_probs=27.8

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------------------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-------------------------------------------   77 (356)
                      .|||||||+.|+-+|..+++.|.+|.|+|+.+.+...                                           
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            3899999999999999999999999999998654100                                           


Q ss_pred             -----cCCHHHH-HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC---CcEEecCeEEEecCC
Q 018416           78 -----LFTPKIA-SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GNRLPTDMVVVGIGI  137 (356)
Q Consensus        78 -----~~d~~~~-~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g~~i~~D~vi~a~G~  137 (356)
                           .++++.. ..+.+.+++.||++++++.+.++.. +++++..|.+.+   ..++.++.+|=|+|.
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence                 1222222 2345566778999999999999987 566788887765   467999999999993

>PRK14694 putative mercuric reductase; Provisional

Probab=97.98  E-value=3.3e-05  Score=77.42  Aligned_cols=99  Identities=21%  Similarity=0.303  Sum_probs=65.8

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc--------------------------cCC---cc------CCH-H
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------------------------CMA---RL------FTP-K   82 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~--------------------------~l~---~~------~d~-~   82 (356)
                      .-.++|||+|+.|+.+|..|++.|.+|+++++.+-                          -.+   ..      +|. +
T Consensus         6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   85 (468)
T PRK14694          6 NLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRSA   85 (468)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHHH
Confidence            45799999999999999999999999999998630                          000   00      111 1


Q ss_pred             HHHH------------HHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCch
Q 018416           83 IASY------------YEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        83 ~~~~------------~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~  142 (356)
                      +.+.            ....+++. +|+++.+ .++.++.  +.  ..|.+.+|  +++++|.+|+|+|.+|...
T Consensus        86 l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~--~~--~~V~~~~g~~~~~~~d~lViATGs~p~~p  155 (468)
T PRK14694         86 LLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDE--RT--LTVTLNDGGEQTVHFDRAFIGTGARPAEP  155 (468)
T ss_pred             HHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecC--CE--EEEEecCCCeEEEECCEEEEeCCCCCCCC
Confidence            1111            11123333 7888876 4555532  22  35666676  3799999999999998654

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.98  E-value=1.5e-05  Score=84.80  Aligned_cols=35  Identities=26%  Similarity=0.174  Sum_probs=32.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+|+|+|||+|+.|+++|..|+++|++||++++.+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            57899999999999999999999999999999753

>TIGR02053 MerA mercuric reductase

Probab=97.98  E-value=5.1e-05  Score=75.93  Aligned_cols=94  Identities=20%  Similarity=0.268  Sum_probs=64.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc----------------------------------CC------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------------------------FT------   80 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~----------------------------------~d------   80 (356)
                      .++|||+|+.|+.+|..++++|.+|+++++.+ +....                                  +|      
T Consensus         2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   80 (463)
T TIGR02053         2 DLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLE   80 (463)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHH
Confidence            58999999999999999999999999999853 11110                                  01      


Q ss_pred             --HHHHHH-----HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc-EEecCeEEEecCCCCCch
Q 018416           81 --PKIASY-----YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        81 --~~~~~~-----~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~~p~~~  142 (356)
                        .++...     +.+.+++.||+++.+... .+   ++.   .+.+.+|+ .+.+|.+|+|+|.+|...
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~-~~---~~~---~v~v~~g~~~~~~~~lIiATGs~p~~p  143 (463)
T TIGR02053        81 GKREVVEELRHEKYEDVLSSYGVDYLRGRAR-FK---DPK---TVKVDLGREVRGAKRFLIATGARPAIP  143 (463)
T ss_pred             HHHHHHHHHhhhhHHHHHHhCCcEEEEEEEE-Ec---cCC---EEEEcCCeEEEEeCEEEEcCCCCCCCC
Confidence              011111     334567789999877532 22   222   34555553 689999999999998654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.98  E-value=0.00012  Score=72.64  Aligned_cols=105  Identities=20%  Similarity=0.275  Sum_probs=76.5

Q ss_pred             cEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCccCCc--------------------------------------cCC-
Q 018416           41 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMAR--------------------------------------LFT-   80 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~l~~--------------------------------------~~d-   80 (356)
                      .|||||+|..|+-+|..+++.| .+|+|+|+.+.....                                      ..+ 
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP   80 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            4899999999999999999999 999999986432100                                      001 


Q ss_pred             -------------------------------------------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcC
Q 018416           81 -------------------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDS  111 (356)
Q Consensus        81 -------------------------------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~  111 (356)
                                                                       .++.+.+.+.+++.|+++++++.++++..++
T Consensus        81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~  160 (439)
T TIGR01813        81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD  160 (439)
T ss_pred             HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECC
Confidence                                                             1233445556677899999999999998755


Q ss_pred             CCcEEEEEeC--CCc--EEecCeEEEecC-CCCCchhhh
Q 018416          112 NGKVVAVNLR--DGN--RLPTDMVVVGIG-IRPNTSLFE  145 (356)
Q Consensus       112 ~g~v~~v~~~--~g~--~i~~D~vi~a~G-~~p~~~l~~  145 (356)
                      ++++..+...  +++  .+.++.||+|+| ...|.++.+
T Consensus       161 ~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~  199 (439)
T TIGR01813       161 QGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA  199 (439)
T ss_pred             CCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence            6666665543  343  478999999999 556666654

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.97  E-value=0.00014  Score=71.99  Aligned_cols=138  Identities=22%  Similarity=0.238  Sum_probs=90.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC----------------------------------------Cc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------------------AR   77 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l----------------------------------------~~   77 (356)
                      ..++++|||+|++|+-.|..|.+.|.+|+++||.+.+.                                        ++
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~   84 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR   84 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence            36899999999999999999999999999999986541                                        11


Q ss_pred             c-CCH-HHHHHHHHHHHhCCC--EEEeCCeeeEEEEcCCCcEEEEEeCCC----cEEecCeEEEecCCC--CCchhhhcc
Q 018416           78 L-FTP-KIASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMVVVGIGIR--PNTSLFEGQ  147 (356)
Q Consensus        78 ~-~d~-~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~vi~a~G~~--p~~~l~~~~  147 (356)
                      . -+. ++.++++...+..++  .+.+++.+.+++...+|.-. |.+.++    ++.-+|.|++|+|.-  |+.......
T Consensus        85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~-V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~  163 (448)
T KOG1399|consen   85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWR-VTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP  163 (448)
T ss_pred             cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCcee-EEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence            1 111 566777777777775  57778888888764434332 333322    356799999999976  665544432


Q ss_pred             -cccccCc-EEEeccccc---CCCCEEEEccccc
Q 018416          148 -LTLEKGG-IKVTGRLQS---SNSSVYAVGDVAA  176 (356)
Q Consensus       148 -l~~~~g~-I~vd~~l~t---s~~~VyAiGD~~~  176 (356)
                       ++.-.|. |-.-++...   ....|.+||--.+
T Consensus       164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S  197 (448)
T KOG1399|consen  164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNS  197 (448)
T ss_pred             chhhcCCcceehhhccCcccccCceEEEECCCcc
Confidence             2222232 222233222   3567888885544

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.97  E-value=3.4e-05  Score=73.11  Aligned_cols=54  Identities=20%  Similarity=0.338  Sum_probs=38.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHh-------cCCCCcEEEECCchHHHHHHHHHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMK-------SCSGGNAVVIGGGYIGMECAASLVI   60 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~-------~~~~~~vvVvGgG~iGlE~A~~L~~   60 (356)
                      .++.++|||.++++|+..|-   +.....-+.       ...+.+|+|||.|.+++++|..|..
T Consensus       120 ~dR~L~IPGe~l~~V~Sare---fv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls  180 (468)
T KOG1800|consen  120 GDRRLDIPGEELSGVISARE---FVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLS  180 (468)
T ss_pred             CCcccCCCCcccccceehhh---hhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhC
Confidence            57899999999999995432   222222110       1136799999999999999998863

>PRK13748 putative mercuric reductase; Provisional

Probab=97.96  E-value=0.00013  Score=74.84  Aligned_cols=111  Identities=17%  Similarity=0.254  Sum_probs=70.9

Q ss_pred             HHHHHHHHHhcC-------CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-----------------------
Q 018416           26 DANRLVNVMKSC-------SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-----------------------   75 (356)
Q Consensus        26 da~~i~~~l~~~-------~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-----------------------   75 (356)
                      ...++++++...       ..-.++|||+|+.|+.+|..+++.|.+|.++++.. +.                       
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~  156 (561)
T PRK13748         78 LLDKMRGWLGGADKHSGNERPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHL  156 (561)
T ss_pred             hhhhhhhhhccccchhcccCCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc-ceeeccccCccccHHHHHHHHHHHH
Confidence            345566666532       22489999999999999999999999999999862 10                       


Q ss_pred             ----C---cc------CCH-HHHHH------------HHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EE
Q 018416           76 ----A---RL------FTP-KIASY------------YEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RL  126 (356)
Q Consensus        76 ----~---~~------~d~-~~~~~------------~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i  126 (356)
                          +   ..      ++. .+.+.            ..+.+++. +|+++.+. +..+   ++.. ..+.+.+|+  ++
T Consensus       157 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~---~~~~-~~v~~~~g~~~~~  231 (561)
T PRK13748        157 RRESPFDGGIAATVPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGE-ARFK---DDQT-LIVRLNDGGERVV  231 (561)
T ss_pred             HhcccccCCccCCCCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEE-EEEe---cCCE-EEEEeCCCceEEE
Confidence                0   00      111 11111            11223444 78888763 3333   2232 345556663  69


Q ss_pred             ecCeEEEecCCCCCch
Q 018416          127 PTDMVVVGIGIRPNTS  142 (356)
Q Consensus       127 ~~D~vi~a~G~~p~~~  142 (356)
                      .+|.+|+|+|.+|...
T Consensus       232 ~~d~lviAtGs~p~~p  247 (561)
T PRK13748        232 AFDRCLIATGASPAVP  247 (561)
T ss_pred             EcCEEEEcCCCCCCCC
Confidence            9999999999998754

>PRK06996 hypothetical protein; Provisional

Probab=97.95  E-value=8.9e-05  Score=72.70  Aligned_cols=98  Identities=15%  Similarity=0.256  Sum_probs=73.4

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCC----CcEEEEeeCCccCC----c---------------------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINK----INVTMVFPEAHCMA----R---------------------------------   77 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G----~~Vtlv~~~~~~l~----~---------------------------------   77 (356)
                      ..+|+|||||+.|+-+|..|++.|    .+|+++++.+..-+    +                                 
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~   90 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR   90 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence            458999999999999999999987    47999998631100    0                                 


Q ss_pred             --------------------cC-CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC---cEEecCeEEE
Q 018416           78 --------------------LF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVV  133 (356)
Q Consensus        78 --------------------~~-d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~  133 (356)
                                          .+ -.++.+.+.+.+++.|++++.++++++++.++++  ..+.+.++   +++.+|+||-
T Consensus        91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIg  168 (398)
T PRK06996         91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQ  168 (398)
T ss_pred             CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEE
Confidence                                00 0234566677788889999999999999764444  34666654   5899999999


Q ss_pred             ecCCC
Q 018416          134 GIGIR  138 (356)
Q Consensus       134 a~G~~  138 (356)
                      |.|..
T Consensus       169 ADG~~  173 (398)
T PRK06996        169 AEGGL  173 (398)
T ss_pred             CCCCC
Confidence            99964

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.94  E-value=7.2e-05  Score=74.72  Aligned_cols=95  Identities=24%  Similarity=0.328  Sum_probs=62.3

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc----------------------------C-------C-HHH-
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------------------F-------T-PKI-   83 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~----------------------------~-------d-~~~-   83 (356)
                      .++|||||+.|+.+|..|+++|.+|+++++ +.+....                            +       + +.+ 
T Consensus         3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   81 (461)
T TIGR01350         3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKMQ   81 (461)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHHH
Confidence            599999999999999999999999999998 4431110                            0       0 000 


Q ss_pred             ----------HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCCCCCc
Q 018416           84 ----------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        84 ----------~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~  141 (356)
                                ...+...+++.||+++.+... .+   ++.. ..+...+| .++.+|.+|+|+|.+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~-~~---~~~~-~~v~~~~g~~~~~~d~lVlAtG~~p~~  145 (461)
T TIGR01350        82 KRKNKVVKKLVGGVKGLLKKNKVTVIKGEAK-FL---DPGT-VLVTGENGEETLTAKNIIIATGSRPRS  145 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec---cCCE-EEEecCCCcEEEEeCEEEEcCCCCCCC
Confidence                      011123345567888766432 22   2222 23444444 479999999999998864

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.94  E-value=0.00012  Score=71.70  Aligned_cols=101  Identities=17%  Similarity=0.200  Sum_probs=70.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC--Cc----cC----------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--AR----LF----------------------------------   79 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l--~~----~~----------------------------------   79 (356)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+...  ..    .+                                  
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ   82 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence            579999999999999999999999999999886411  00    00                                  


Q ss_pred             ------C-------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CCc--EEecCeEEEecCC
Q 018416           80 ------T-------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPTDMVVVGIGI  137 (356)
Q Consensus        80 ------d-------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~D~vi~a~G~  137 (356)
                            +             +.+...+.+.+.+.|++++++.+++++...++.. ..|.+. +|+  ++.+|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~  161 (390)
T TIGR02360        83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF  161 (390)
T ss_pred             EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence                  0             1122334445556788888888877775312222 345564 675  6899999999997


Q ss_pred             CCCc
Q 018416          138 RPNT  141 (356)
Q Consensus       138 ~p~~  141 (356)
                      +...
T Consensus       162 ~S~V  165 (390)
T TIGR02360       162 HGVS  165 (390)
T ss_pred             chhh
Confidence            6644

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.93  E-value=2.2e-05  Score=82.75  Aligned_cols=92  Identities=21%  Similarity=0.308  Sum_probs=72.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------c-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+++|.|||+|+.|+-+|..|.+.|+.||+.+|.+++..       . -+|.-+.++-.+.|.+.||+|.+|+.+-+-  
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence            478999999999999999999999999999999998732       1 157778888888899999999999875321  


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                              +.+ |+-.-+.|.|++|+|..-.
T Consensus      1862 --------vs~-d~l~~~~daiv~a~gst~p 1883 (2142)
T KOG0399|consen 1862 --------VSL-DELKKENDAIVLATGSTTP 1883 (2142)
T ss_pred             --------ccH-HHHhhccCeEEEEeCCCCC
Confidence                    111 3334467999999996533

>PRK07538 hypothetical protein; Provisional

Probab=97.93  E-value=0.0001  Score=72.53  Aligned_cols=99  Identities=19%  Similarity=0.225  Sum_probs=68.2

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----------------CC-----------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------FT-----------------------   80 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-----------------~d-----------------------   80 (356)
                      +|+|||||+.|+-+|..|++.|.+|+++|+.+.+.+..                 +.                       
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~   81 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI   81 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence            69999999999999999999999999999986431100                 00                       


Q ss_pred             --------------------HHHHHHHHHHHHh-CC-CEEEeCCeeeEEEEcCCCcEEEEEeCC-----CcEEecCeEEE
Q 018416           81 --------------------PKIASYYEEYYKS-KG-VKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVV  133 (356)
Q Consensus        81 --------------------~~~~~~~~~~l~~-~G-V~v~~~~~v~~i~~~~~g~v~~v~~~~-----g~~i~~D~vi~  133 (356)
                                          .++.+.+.+.+.+ .| +++++++++++++.++++.+  +.+.+     ++++.+|+||-
T Consensus        82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg  159 (413)
T PRK07538         82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG  159 (413)
T ss_pred             eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence                                0111223333333 35 46999999999987555533  33333     24899999999


Q ss_pred             ecCCCCCc
Q 018416          134 GIGIRPNT  141 (356)
Q Consensus       134 a~G~~p~~  141 (356)
                      |-|.....
T Consensus       160 ADG~~S~v  167 (413)
T PRK07538        160 ADGIHSAV  167 (413)
T ss_pred             CCCCCHHH
Confidence            99976543

>PRK06126 hypothetical protein; Provisional

Probab=97.92  E-value=0.00014  Score=74.40  Aligned_cols=100  Identities=21%  Similarity=0.326  Sum_probs=70.2

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------   77 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----------------------------------------   77 (356)
                      ..+|+|||||+.|+-+|..|+++|++|+|+|+.+.+...                                         
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~   86 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR   86 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence            468999999999999999999999999999987421000                                         


Q ss_pred             -------------c----------------------CC-HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEe
Q 018416           78 -------------L----------------------FT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNL  120 (356)
Q Consensus        78 -------------~----------------------~d-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~  120 (356)
                                   .                      ++ ..+.+.+.+.+++ .|+++++++++++++.++++ +. +.+
T Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~-v~~  164 (545)
T PRK06126         87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-VT-ATV  164 (545)
T ss_pred             CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe-EE-EEE
Confidence                         0                      00 0022233334443 48999999999999874444 32 333


Q ss_pred             ---CCCc--EEecCeEEEecCCCCC
Q 018416          121 ---RDGN--RLPTDMVVVGIGIRPN  140 (356)
Q Consensus       121 ---~~g~--~i~~D~vi~a~G~~p~  140 (356)
                         .+|+  ++.+|+||.|.|.+..
T Consensus       165 ~~~~~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        165 EDLDGGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             EECCCCcEEEEEEEEEEecCCcchH
Confidence               3454  6899999999997664

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.91  E-value=1.6e-05  Score=78.93  Aligned_cols=90  Identities=22%  Similarity=0.234  Sum_probs=70.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------c-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+++|+|||+|+.|+.+|..|++.|++||++++.+.+..       . .++.++.+...+.|++.||+|+.++.+-.   
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---  198 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---  198 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---
Confidence            468999999999999999999999999999999887632       1 15678999999999999999999987631   


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                             .+++++ ..-++|.|++++|..
T Consensus       199 -------~it~~~-L~~e~Dav~l~~G~~  219 (457)
T COG0493         199 -------DITLEE-LLKEYDAVFLATGAG  219 (457)
T ss_pred             -------cCCHHH-HHHhhCEEEEecccc
Confidence                   111111 123459999999943

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.91  E-value=4.8e-05  Score=74.19  Aligned_cols=99  Identities=22%  Similarity=0.352  Sum_probs=77.6

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCCccCC------cc---CCHHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMA------RL---FTPKIASYYEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~~~l~------~~---~d~~~~~~~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      .++++|||+|+.|.-+++.+++.|.  +++++.+...+..      ..   .....+....+.+++.||++++++.++++
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~  153 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA  153 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEe
Confidence            5789999999999999999999876  6788876644311      11   12344555667899999999999999999


Q ss_pred             EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      +-. +   ..+.+.+|+.+++|.+++|||..|++
T Consensus       154 D~~-~---K~l~~~~Ge~~kys~LilATGs~~~~  183 (478)
T KOG1336|consen  154 DLA-S---KTLVLGNGETLKYSKLIIATGSSAKT  183 (478)
T ss_pred             ecc-c---cEEEeCCCceeecceEEEeecCcccc
Confidence            752 2   36788999999999999999996554

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.90  E-value=0.00014  Score=72.74  Aligned_cols=96  Identities=22%  Similarity=0.302  Sum_probs=63.5

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc---C-----C------------------c----------cCCH-HH
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC---M-----A------------------R----------LFTP-KI   83 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~---l-----~------------------~----------~~d~-~~   83 (356)
                      +++|||+|+.|+.+|..+++.|.+|+++++.+.-   +     |                  .          ..|. .+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~   81 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM   81 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence            6999999999999999999999999999986320   0     0                  0          0111 11


Q ss_pred             H-----------HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCCCCCc
Q 018416           84 A-----------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        84 ~-----------~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~  141 (356)
                      .           +.++..+++.||+++.+.- ..+   ++.. ..+..+++ +++++|.+|+|+|.+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~---~~~~-v~v~~~~~~~~~~~d~lviATGs~p~~  146 (458)
T PRK06912         82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKA-SFE---TDHR-VRVEYGDKEEVVDAEQFIIAAGSEPTE  146 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEc---cCCE-EEEeeCCCcEEEECCEEEEeCCCCCCC
Confidence            1           1123345567888876642 222   2333 24554555 479999999999999863

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.90  E-value=0.00019  Score=63.66  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=68.8

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc------C-------------------------------CH
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------F-------------------------------TP   81 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~------~-------------------------------d~   81 (356)
                      ...|+|||+|+.|+-+|..|++.|.+|.++|+...+....      |                               ..
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~   96 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV   96 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence            4689999999999999999999999999999975542110      0                               11


Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-----------CCcEEecCeEEEecCCCCCc
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~  141 (356)
                      +....+....-+.|++++..+.++.+--.+++++..+..+           |.-.+++..||=+||...+.
T Consensus        97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v  167 (230)
T PF01946_consen   97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV  167 (230)
T ss_dssp             HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred             HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence            2233333344458999999999998865344777776653           22479999999999987654

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.89  E-value=0.00019  Score=69.64  Aligned_cols=31  Identities=19%  Similarity=0.279  Sum_probs=29.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      +|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~   32 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF   32 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5899999999999999999999999999985

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.89  E-value=0.00013  Score=70.95  Aligned_cols=97  Identities=19%  Similarity=0.281  Sum_probs=71.0

Q ss_pred             cEEEECCchHHHHHHHHH--HHCCCcEEEEeeCCcc--CCc----c----C-----------------------------
Q 018416           41 NAVVIGGGYIGMECAASL--VINKINVTMVFPEAHC--MAR----L----F-----------------------------   79 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L--~~~G~~Vtlv~~~~~~--l~~----~----~-----------------------------   79 (356)
                      .|+|||+|+.|+-+|..|  ++.|.+|.++++.+..  -..    +    .                             
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            389999999999999999  8889999999987554  100    0    0                             


Q ss_pred             -----CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           80 -----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        80 -----d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                           ..+..+.+.+.+.+.| .++.+++|++++.+++  ...+.+++|+++.++.||-|.|..+.
T Consensus        81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence                 0123344555566445 4567889999987443  34578899999999999999996544

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.88  E-value=0.00016  Score=70.65  Aligned_cols=97  Identities=23%  Similarity=0.421  Sum_probs=66.9

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC-Ccc-----------CCc-------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE-AHC-----------MAR-------------------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~-~~~-----------l~~-------------------------------   77 (356)
                      +|+|||||+.|+-+|..|++.|.+|+++|+. +.+           +..                               
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS   81 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence            5899999999999999999999999999987 211           000                               


Q ss_pred             ---c---CCH-HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC------C--cEEecCeEEEecCCCCC
Q 018416           78 ---L---FTP-KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD------G--NRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        78 ---~---~d~-~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~------g--~~i~~D~vi~a~G~~p~  140 (356)
                         .   ++. .+-+.+.+...+.|++++.+ .++++..++++  ..+.+.+      +  .++.+|.||.|.|..+.
T Consensus        82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~  156 (388)
T TIGR02023        82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRTPKKGAGGEKGSVEADVVIGADGANSP  156 (388)
T ss_pred             CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence               0   010 12233455556789999765 58888764333  2344432      2  47999999999997653

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK11445 putative oxidoreductase; Provisional

Probab=97.87  E-value=0.00022  Score=68.76  Aligned_cols=98  Identities=17%  Similarity=0.258  Sum_probs=67.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC--------CccCCHHH-----------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------ARLFTPKI-----------------------------   83 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l--------~~~~d~~~-----------------------------   83 (356)
                      +|+|||+|+.|+-+|..|++. .+|+++|+.+.+.        ...+.+..                             
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~   81 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL   81 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence            689999999999999999999 9999999876321        00011100                             


Q ss_pred             ----------------HHHHHHH---HHhCCCEEEeCCeeeEEEEcCCCcEEEEEe-CCCc--EEecCeEEEecCCCCCc
Q 018416           84 ----------------ASYYEEY---YKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        84 ----------------~~~~~~~---l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~vi~a~G~~p~~  141 (356)
                                      ...+.+.   ..+.||+++.++.+++++.++++  ..+.+ .+|+  ++.+|.||.|.|.....
T Consensus        82 ~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~~g~~~~i~a~~vV~AdG~~S~v  159 (351)
T PRK11445         82 ANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDG--YHVIFRADGWEQHITARYLVGADGANSMV  159 (351)
T ss_pred             cccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE--EEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence                            1111122   23468999999999999864444  23443 4664  68999999999986543

>PTZ00058 glutathione reductase; Provisional

Probab=97.85  E-value=0.00019  Score=73.42  Aligned_cols=97  Identities=27%  Similarity=0.449  Sum_probs=66.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC---------------------------------c-cCCH-----
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------------------------R-LFTP-----   81 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~---------------------------------~-~~d~-----   81 (356)
                      .++|||+|+.|+.+|..+++.|.+|.+||+.. +..                                 . .+|.     
T Consensus        50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~~~~  128 (561)
T PTZ00058         50 DLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPLLVE  128 (561)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHHHHH
Confidence            69999999999999999999999999999752 100                                 0 0111     


Q ss_pred             -------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcE-------------------EEE------EeCCCcEEecC
Q 018416           82 -------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV-------------------VAV------NLRDGNRLPTD  129 (356)
Q Consensus        82 -------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v-------------------~~v------~~~~g~~i~~D  129 (356)
                             .+.+.+.+.+++.||+++.+..  ++.  +++.+                   ..+      ..++|+++.+|
T Consensus       129 ~~~~~~~~~~~~~~~~l~~~gv~~~~G~a--~f~--~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad  204 (561)
T PTZ00058        129 RRDKYIRRLNDIYRQNLKKDNVEYFEGKG--SLL--SENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGK  204 (561)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcEEEEEEE--EEe--cCCEEEeeccccccccccccccccceeeeccceecCCCcEEECC
Confidence                   1123344567778999998764  111  11111                   123      23567889999


Q ss_pred             eEEEecCCCCCch
Q 018416          130 MVVVGIGIRPNTS  142 (356)
Q Consensus       130 ~vi~a~G~~p~~~  142 (356)
                      .+|+|||.+|...
T Consensus       205 ~lVIATGS~P~~P  217 (561)
T PTZ00058        205 NILIAVGNKPIFP  217 (561)
T ss_pred             EEEEecCCCCCCC
Confidence            9999999998654

>PLN02546 glutathione reductase

Probab=97.85  E-value=9.9e-05  Score=75.47  Aligned_cols=94  Identities=17%  Similarity=0.273  Sum_probs=64.8

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEee----------CC--------------ccC------C------c-------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFP----------EA--------------HCM------A------R-------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~----------~~--------------~~l------~------~-------   77 (356)
                      .++|||+|+.|+++|..++++|++|+|+|+          +.              .++      .      .       
T Consensus        81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~~~  160 (558)
T PLN02546         81 DLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKYET  160 (558)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcccCC
Confidence            599999999999999999999999999995          11              000      0      0       


Q ss_pred             --cCC------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           78 --LFT------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        78 --~~d------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                        .+|            .++...+.+.|++.||+++.+. .+.+.   ..   .++. +|+++.+|.+|+|+|.+|...
T Consensus       161 ~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~-a~~vd---~~---~V~v-~G~~~~~D~LVIATGs~p~~P  231 (558)
T PLN02546        161 EPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGR-GKIVD---PH---TVDV-DGKLYTARNILIAVGGRPFIP  231 (558)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEcc---CC---EEEE-CCEEEECCEEEEeCCCCCCCC
Confidence              011            0122334556778899999763 33342   22   2333 577899999999999998654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.84  E-value=0.0002  Score=71.97  Aligned_cols=101  Identities=20%  Similarity=0.218  Sum_probs=63.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEee------CCccC---------Cc------------------c--C-----
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFP------EAHCM---------AR------------------L--F-----   79 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~------~~~~l---------~~------------------~--~-----   79 (356)
                      -.++|||+|+.|+.+|..+++.|.+|.++++      ...+.         |.                  .  +     
T Consensus         5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~~   84 (475)
T PRK06327          5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDGV   84 (475)
T ss_pred             eeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCCC
Confidence            3699999999999999999999999999997      11110         00                  0  0     


Q ss_pred             --CH------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416           80 --TP------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        80 --d~------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                        +.            .+.+.+++.++..||+++.+.. ..+...+++....+...+++++++|.+|+|+|.+|..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~  159 (475)
T PRK06327         85 KIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRG-SFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRH  159 (475)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCC
Confidence              00            0011223345567888886643 3333222233223332345689999999999999863

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.81  E-value=0.00029  Score=68.15  Aligned_cols=33  Identities=21%  Similarity=0.150  Sum_probs=30.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      -+|+|||||.+|+-+|..|+++|.+|+|++++.
T Consensus         4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            469999999999999999999999999999864

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.80  E-value=1.3e-05  Score=70.69  Aligned_cols=62  Identities=23%  Similarity=0.257  Sum_probs=41.8

Q ss_pred             CCccCCCCC-CCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416            4 KLEEFGLSG-SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus         4 ~p~~~~ipG-~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .|+.+++|| .+. .+++.....+..       ..++|+|+|||+|.+|+++|..|.+.|.+||++.|++.
T Consensus       139 ~p~~p~~~g~~~~-~~~h~~~~~~~~-------~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  139 HPRIPDIPGSAFR-PIIHSADWRDPE-------DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             SB---S-TTGGCS-EEEEGGG-STTG-------GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             CCCcccccccccc-ceEehhhcCChh-------hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            688889999 544 455444333332       23689999999999999999999999999999999875

...

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.78  E-value=0.00016  Score=72.39  Aligned_cols=32  Identities=22%  Similarity=0.202  Sum_probs=30.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      -.++|||+|+.|+.+|..++++|.+|+|+++.
T Consensus         5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            47999999999999999999999999999975

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.77  E-value=0.00037  Score=68.47  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=31.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|+|||||.+|+-+|..|++.|.+|+++|+++
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999875

>PLN02507 glutathione reductase

Probab=97.77  E-value=0.00036  Score=70.60  Aligned_cols=97  Identities=22%  Similarity=0.300  Sum_probs=64.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC---------CccCCc----------c-----------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE---------AHCMAR----------L-----------------------   78 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~---------~~~l~~----------~-----------------------   78 (356)
                      .++|||+|+.|+.+|..++++|.+|.++|+.         ..+...          .                       
T Consensus        27 DvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~~~  106 (499)
T PLN02507         27 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEINE  106 (499)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            5999999999999999999999999999951         111000          0                       


Q ss_pred             ---CC-HH-----------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCCCCc
Q 018416           79 ---FT-PK-----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        79 ---~d-~~-----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~  141 (356)
                         +| .+           +...+++.+++.||+++.+ .+..+.   ... ..+++.+|+  ++.+|.+|+|+|.+|..
T Consensus       107 ~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd---~~~-v~V~~~~g~~~~~~~d~LIIATGs~p~~  181 (499)
T PLN02507        107 KVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVG---PNE-VEVTQLDGTKLRYTAKHILIATGSRAQR  181 (499)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEec---CCE-EEEEeCCCcEEEEEcCEEEEecCCCCCC
Confidence               00 00           0111223456678998876 333442   222 356667775  58899999999998865


Q ss_pred             h
Q 018416          142 S  142 (356)
Q Consensus       142 ~  142 (356)
                      .
T Consensus       182 p  182 (499)
T PLN02507        182 P  182 (499)
T ss_pred             C
Confidence            4

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.76  E-value=0.00041  Score=68.08  Aligned_cols=100  Identities=17%  Similarity=0.316  Sum_probs=65.5

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC------------c------c------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------------R------L------------------------   78 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~------------~------~------------------------   78 (356)
                      +|+|||||+.|+-+|..|++.|.+|.++|+.+.+..            .      .                        
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~   81 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL   81 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence            699999999999999999999999999998743210            0      0                        


Q ss_pred             --------CC-HHHHHHHHHHHHhCCCEEEeCCeeeEEEEc-CCCcEEEEEe--CC-----C--cEEecCeEEEecCCCC
Q 018416           79 --------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVD-SNGKVVAVNL--RD-----G--NRLPTDMVVVGIGIRP  139 (356)
Q Consensus        79 --------~d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~g~v~~v~~--~~-----g--~~i~~D~vi~a~G~~p  139 (356)
                              ++ ..+-+.+.+...+.|++++.++ +.+++.. +.+....+++  .+     |  .++.+++||.|.|..+
T Consensus        82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S  160 (398)
T TIGR02028        82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS  160 (398)
T ss_pred             CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence                    00 0111234445567899998775 6666421 1122223332  21     3  4799999999999876


Q ss_pred             Cc
Q 018416          140 NT  141 (356)
Q Consensus       140 ~~  141 (356)
                      ..
T Consensus       161 ~v  162 (398)
T TIGR02028       161 RV  162 (398)
T ss_pred             HH
Confidence            43

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.75  E-value=0.00038  Score=59.13  Aligned_cols=93  Identities=22%  Similarity=0.375  Sum_probs=61.5

Q ss_pred             EEECCchHHHHHHHHHHHC-----CCcEEEEeeCCcc---------------------CCccCC---HH-----------
Q 018416           43 VVIGGGYIGMECAASLVIN-----KINVTMVFPEAHC---------------------MARLFT---PK-----------   82 (356)
Q Consensus        43 vVvGgG~iGlE~A~~L~~~-----G~~Vtlv~~~~~~---------------------l~~~~d---~~-----------   82 (356)
                      +|||+|+.|+-++..|.+.     ..+|+|+++.+.-                     +...-+   ++           
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~   80 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD   80 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence            5999999999999999987     4689999995321                     000000   00           


Q ss_pred             ---------------HHHHHHHH----HH--hCCCEEE-eCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416           83 ---------------IASYYEEY----YK--SKGVKFV-KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        83 ---------------~~~~~~~~----l~--~~GV~v~-~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                                     ..++++..    ++  ..||++. ...+|+.+...+++  ..+.+.+|..+.+|.||+|+|.
T Consensus        81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen   81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence                           11222222    22  2355443 35588888875555  4677899999999999999995

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.75  E-value=0.00025  Score=74.22  Aligned_cols=33  Identities=30%  Similarity=0.428  Sum_probs=31.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+|+|||||.+|+-+|..|+++|.+|+|+++..
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            489999999999999999999999999999864

>PRK14727 putative mercuric reductase; Provisional

Probab=97.74  E-value=0.00036  Score=70.21  Aligned_cols=99  Identities=18%  Similarity=0.300  Sum_probs=65.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC---------------------------C--c------cCCHHH
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------------A--R------LFTPKI   83 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l---------------------------~--~------~~d~~~   83 (356)
                      .-+++|||+|+.|+.+|..|++.|.+|+++++.+.+.                           +  .      .+|...
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   95 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRGL   95 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHHH
Confidence            4579999999999999999999999999999863210                           0  0      011110


Q ss_pred             --------HHH-----HHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCCCCch
Q 018416           84 --------ASY-----YEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        84 --------~~~-----~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  142 (356)
                              ...     ..+.++.. ||+++.+.-  .+.  +++. ..+++.+|+  ++++|.+|+|+|.+|...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a--~f~--~~~~-v~v~~~~g~~~~~~~d~lViATGs~p~~p  165 (479)
T PRK14727         96 LLHQQQARVEELRHAKYQSILDGNPALTLLKGYA--RFK--DGNT-LVVRLHDGGERVLAADRCLIATGSTPTIP  165 (479)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEE--EEe--cCCE-EEEEeCCCceEEEEeCEEEEecCCCCCCC
Confidence                    011     22233333 788887652  332  2232 346666764  699999999999988654

>PRK07121 hypothetical protein; Validated

Probab=97.73  E-value=0.00061  Score=68.76  Aligned_cols=61  Identities=25%  Similarity=0.299  Sum_probs=42.7

Q ss_pred             HHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-Cc--EEec-CeEEEecCC-CCCchhhhc
Q 018416           86 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GN--RLPT-DMVVVGIGI-RPNTSLFEG  146 (356)
Q Consensus        86 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~--~i~~-D~vi~a~G~-~p~~~l~~~  146 (356)
                      .+.+.+++.|+++++++.++++..+++|++..+...+ ++  .+.+ +.||+|+|- ..|.++.+.
T Consensus       182 ~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~~  247 (492)
T PRK07121        182 PLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVAR  247 (492)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHHH
Confidence            3445556778999999999998764456777666532 32  4778 999999994 455555543

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=97.72  E-value=0.00058  Score=68.39  Aligned_cols=106  Identities=16%  Similarity=0.243  Sum_probs=76.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc-C--------------Cc------------------------cCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-M--------------AR------------------------LFT   80 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~-l--------------~~------------------------~~d   80 (356)
                      -.|||||+|..|+-+|..+++.|.+|+|+|+.+.. .              ..                        ..+
T Consensus         5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (466)
T PRK08274          5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRTD   84 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCCC
Confidence            47999999999999999999999999999986521 0              00                        001


Q ss_pred             H----------------------------------------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCc
Q 018416           81 P----------------------------------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK  114 (356)
Q Consensus        81 ~----------------------------------------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~  114 (356)
                      +                                              .+...+.+.+++.|++++++++++++.. ++++
T Consensus        85 ~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~  163 (466)
T PRK08274         85 EALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALEL-DDGR  163 (466)
T ss_pred             HHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCe
Confidence            1                                              1233444556678999999999999986 4677


Q ss_pred             EEEEEeC--CC--cEEecCeEEEecC-CCCCchhhhc
Q 018416          115 VVAVNLR--DG--NRLPTDMVVVGIG-IRPNTSLFEG  146 (356)
Q Consensus       115 v~~v~~~--~g--~~i~~D~vi~a~G-~~p~~~l~~~  146 (356)
                      +..+...  ++  ..+.++.||+|+| +..|.+++..
T Consensus       164 v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~~  200 (466)
T PRK08274        164 FVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLRE  200 (466)
T ss_pred             EEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHHh
Confidence            7666552  33  3588999999998 4556556553

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.71  E-value=7.6e-05  Score=72.84  Aligned_cols=71  Identities=21%  Similarity=0.271  Sum_probs=54.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------cCCHH------HHHHHHHHHHhCCCEEEeCCeeeE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LFTPK------IASYYEEYYKSKGVKFVKGTVLSS  106 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------~~d~~------~~~~~~~~l~~~GV~v~~~~~v~~  106 (356)
                      .++++|||||..|++.|..|+..|.+|+|+++.+.+..+      .|+..      ++-.+.+.-..-+|++++.++|++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e  203 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE  203 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence            579999999999999999999999999999999887433      11111      112222333346899999999999


Q ss_pred             EEE
Q 018416          107 FDV  109 (356)
Q Consensus       107 i~~  109 (356)
                      +.+
T Consensus       204 v~G  206 (622)
T COG1148         204 VSG  206 (622)
T ss_pred             ecc
Confidence            876

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.70  E-value=0.00037  Score=72.30  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=32.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      +..+|+|||||+.|+-+|..|++.|++|+|+|+.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            45789999999999999999999999999999975

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.69  E-value=0.00049  Score=67.60  Aligned_cols=32  Identities=31%  Similarity=0.400  Sum_probs=30.2

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      +|+|||||.+|+-+|..|++.|.+|+|+++..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            68999999999999999999999999999974

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=97.69  E-value=0.00075  Score=66.23  Aligned_cols=51  Identities=20%  Similarity=0.337  Sum_probs=38.5

Q ss_pred             HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           87 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        87 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      +.+.++++|++++.+++|++++..+++.+..+++.+| ++.++.||+++|..
T Consensus       189 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~  239 (407)
T TIGR01373       189 YARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH  239 (407)
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence            3455577899999999999997534555556777776 69999998887743

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.68  E-value=0.00025  Score=70.83  Aligned_cols=31  Identities=23%  Similarity=0.273  Sum_probs=29.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .++|||||+.|+.+|..|++.|.+|.++++.
T Consensus         5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          5 DVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            6999999999999999999999999999983

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.67  E-value=0.00023  Score=68.65  Aligned_cols=103  Identities=23%  Similarity=0.279  Sum_probs=74.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-C---------CHHHHHHHHHHHHhC--CCEEEeCCeee
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-F---------TPKIASYYEEYYKSK--GVKFVKGTVLS  105 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-~---------d~~~~~~~~~~l~~~--GV~v~~~~~v~  105 (356)
                      +.|+|||+|+|..|+.+...|-..-++|++|.+++.++-.. +         -..+.+.+....++.  +++++ .+.-+
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAec~  132 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAECT  132 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEE-ecccE
Confidence            56899999999999999999999999999999998764221 2         246777777777665  56655 44556


Q ss_pred             EEEEcCCCcEE-EEEeCCC----cEEecCeEEEecCCCCCch
Q 018416          106 SFDVDSNGKVV-AVNLRDG----NRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       106 ~i~~~~~g~v~-~v~~~~g----~~i~~D~vi~a~G~~p~~~  142 (356)
                      .+++ +...+. ...+.++    ..+.+|++++|+|..||+-
T Consensus       133 ~iDp-~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF  173 (491)
T KOG2495|consen  133 KIDP-DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF  173 (491)
T ss_pred             eecc-cccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence            6665 233222 1223344    4689999999999999874

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.67  E-value=0.00019  Score=73.38  Aligned_cols=103  Identities=17%  Similarity=0.320  Sum_probs=80.1

Q ss_pred             CCcEEEECCchHHHHHHHHHHHC---CCcEEEEeeCCcc------CCccCC-----HHHHHHHHHHHHhCCCEEEeCCee
Q 018416           39 GGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHC------MARLFT-----PKIASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~---G~~Vtlv~~~~~~------l~~~~d-----~~~~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      ..++||||.|..|.-+.+.+.+.   -.+||++...|++      +++.+.     +++.-.-.++++++||+++++.++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            46899999999999999999883   4579999776654      222222     234444567899999999999999


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416          105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                      +.+..  +.  ..|..++|.++.+|-+|+|+|..|......
T Consensus        83 ~~idr--~~--k~V~t~~g~~~~YDkLilATGS~pfi~PiP  119 (793)
T COG1251          83 IQIDR--AN--KVVTTDAGRTVSYDKLIIATGSYPFILPIP  119 (793)
T ss_pred             EEecc--Cc--ceEEccCCcEeecceeEEecCccccccCCC
Confidence            99975  33  357778899999999999999998875543

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00025  Score=66.66  Aligned_cols=101  Identities=23%  Similarity=0.326  Sum_probs=81.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC--CccC-----------CccCCHHHHHHHHHHHHhCCCEEEeCCee
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~--~~~l-----------~~~~d~~~~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      .+-.|+|||||+.|-..|-+.+|+|.+.-++..+  .+++           +..-.+.++..++++.++..|+++...+.
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra  289 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA  289 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence            4557999999999999999999999987665321  2222           12246889999999999999999988888


Q ss_pred             eEEEEc-CCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416          105 SSFDVD-SNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus       105 ~~i~~~-~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      +++++. ..+....+++.+|-.+.+..+|+++|.+
T Consensus       290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             hcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence            888763 3355778999999999999999999965

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.66  E-value=0.00057  Score=69.91  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=30.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      -.|+|||||.+|+-+|..|+++|.+|+|+|+.
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~   38 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALRGLRCILVERH   38 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence            47999999999999999999999999999986

>PLN02985 squalene monooxygenase

Probab=97.66  E-value=0.00059  Score=69.26  Aligned_cols=34  Identities=18%  Similarity=0.292  Sum_probs=31.5

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++|+.+
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            4579999999999999999999999999999863

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.64  E-value=0.00051  Score=67.59  Aligned_cols=58  Identities=19%  Similarity=0.277  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---CCc--EEecCeEEEecCCCCC
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPN  140 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~  140 (356)
                      .+...+.+.++++||++++++.++++.. +++++..+...   +|+  ++.++.||+|+|--..
T Consensus       142 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  142 ALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            3566677888889999999999999987 57788887766   454  5789999999996555

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.59  E-value=0.001  Score=66.37  Aligned_cols=101  Identities=20%  Similarity=0.305  Sum_probs=66.1

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC------------cc-CCH------------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------------RL-FTP------------------------   81 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~------------~~-~d~------------------------   81 (356)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+....            .+ +++                        
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~  118 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK  118 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence            35799999999999999999999999999998743100            00 000                        


Q ss_pred             --------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCC-CcEEEEEeC---------CCcEEecCeEEEecCC
Q 018416           82 --------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNLR---------DGNRLPTDMVVVGIGI  137 (356)
Q Consensus        82 --------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-g~v~~v~~~---------~g~~i~~D~vi~a~G~  137 (356)
                                    .+-+.+.+...+.|++++.+ .+++++..++ +....+.+.         ++.++++|+||-|.|.
T Consensus       119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~  197 (450)
T PLN00093        119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA  197 (450)
T ss_pred             cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence                          11223444556679999865 4666653111 111234332         1357999999999997


Q ss_pred             CCC
Q 018416          138 RPN  140 (356)
Q Consensus       138 ~p~  140 (356)
                      ...
T Consensus       198 ~S~  200 (450)
T PLN00093        198 NSR  200 (450)
T ss_pred             chH
Confidence            553

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.59  E-value=0.00033  Score=65.49  Aligned_cols=125  Identities=20%  Similarity=0.243  Sum_probs=85.4

Q ss_pred             CCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcE--EecCeEEEecCCCCCchhh-------hc---
Q 018416           79 FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLF-------EG---  146 (356)
Q Consensus        79 ~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~vi~a~G~~p~~~l~-------~~---  146 (356)
                      +.-.+.+.+...+++.|.-++++.+|...+- .++++..+.+.+...  +.+|..++|+|.-=...+.       +.   
T Consensus       256 lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~  334 (421)
T COG3075         256 LGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFD  334 (421)
T ss_pred             hhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhh
Confidence            4556778888999999999999999999876 678888898887754  5689999999942111110       00   


Q ss_pred             -c-c------cc-----------ccCcEEEecccccC-----CCCEEEEccccccCccccCcccccccHHHHHHHHHHHH
Q 018416          147 -Q-L------TL-----------EKGGIKVTGRLQSS-----NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAV  202 (356)
Q Consensus       147 -~-l------~~-----------~~g~I~vd~~l~ts-----~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa  202 (356)
                       . +      .+           -.=++.+|+++|.+     .+|+||||-+.+.++++.-.    -....|+..|-.|+
T Consensus       335 ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~eg----cGsGVaivta~~aa  410 (421)
T COG3075         335 LDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEG----CGSGVAIVTALHAA  410 (421)
T ss_pred             cccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhc----CCcchHHHHHHHHH
Confidence             0 0      00           11257788888863     57999999999988764200    11234566777777


Q ss_pred             HHHcCC
Q 018416          203 AAIMEP  208 (356)
Q Consensus       203 ~~i~g~  208 (356)
                      +.|+.+
T Consensus       411 ~qi~~~  416 (421)
T COG3075         411 EQIAER  416 (421)
T ss_pred             HHHHHH
Confidence            777643

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.57  E-value=0.0009  Score=67.43  Aligned_cols=97  Identities=16%  Similarity=0.220  Sum_probs=64.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC--------ccC---------C------------------c--------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA--------HCM---------A------------------R--------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~--------~~l---------~------------------~--------   77 (356)
                      .++|||+|+.|+.+|..+++.|.+|+++++..        .+.         |                  .        
T Consensus         4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~   83 (484)
T TIGR01438         4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVEET   83 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccCCC
Confidence            69999999999999999999999999999621        010         0                  0        


Q ss_pred             -cCCH------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCch
Q 018416           78 -LFTP------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        78 -~~d~------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~  142 (356)
                       .+|-            .+.+.....|++.||+++.+.-  ++.  ++.. ..+...+|  +++++|.+|+|+|.+|...
T Consensus        84 ~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a--~f~--~~~~-v~v~~~~g~~~~~~~d~lVIATGs~p~~p  158 (484)
T TIGR01438        84 VKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA--EFV--DKHR-IKATNKKGKEKIYSAERFLIATGERPRYP  158 (484)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE--EEc--CCCE-EEEeccCCCceEEEeCEEEEecCCCCCCC
Confidence             0010            0122334457778999987643  332  2232 23333344  3699999999999998643

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.56  E-value=0.00092  Score=69.57  Aligned_cols=103  Identities=21%  Similarity=0.354  Sum_probs=71.1

Q ss_pred             CCcEEEECCchHHHHHHHHHHHC-CCcEEEEeeCCccCCc----------------------------------cCC---
Q 018416           39 GGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMAR----------------------------------LFT---   80 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~-G~~Vtlv~~~~~~l~~----------------------------------~~d---   80 (356)
                      .-+|+|||||+.|+-+|..|+++ |++|+|+++.+.....                                  +.+   
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~  111 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP  111 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence            35899999999999999999995 9999999987432100                                  000   


Q ss_pred             -----------------------------HHHHHHHHHHHHhCC--CEEEeCCeeeEEEEcCCC-cEEEEEeC------C
Q 018416           81 -----------------------------PKIASYYEEYYKSKG--VKFVKGTVLSSFDVDSNG-KVVAVNLR------D  122 (356)
Q Consensus        81 -----------------------------~~~~~~~~~~l~~~G--V~v~~~~~v~~i~~~~~g-~v~~v~~~------~  122 (356)
                                                   ..+-+.+.+.+.+.|  +++..++++++++.++++ .-+.+++.      +
T Consensus       112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~  191 (634)
T PRK08294        112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE  191 (634)
T ss_pred             ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence                                         012333445565655  578889999999764322 22334453      3


Q ss_pred             C--cEEecCeEEEecCCCCCc
Q 018416          123 G--NRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       123 g--~~i~~D~vi~a~G~~p~~  141 (356)
                      |  +++.+|+||-|-|.+...
T Consensus       192 g~~~tv~A~~lVGaDGa~S~V  212 (634)
T PRK08294        192 GEEETVRAKYVVGCDGARSRV  212 (634)
T ss_pred             CceEEEEeCEEEECCCCchHH
Confidence            5  579999999999987544

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.52  E-value=0.00084  Score=67.19  Aligned_cols=32  Identities=19%  Similarity=0.493  Sum_probs=29.8

Q ss_pred             CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~   71 (356)
                      ..|+|||||++|+-+|..|++.  |.+|+|+|+.
T Consensus        25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~   58 (460)
T TIGR03329        25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD   58 (460)
T ss_pred             eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            4799999999999999999998  8999999975

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.52  E-value=0.0012  Score=66.16  Aligned_cols=97  Identities=27%  Similarity=0.397  Sum_probs=67.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--------------c----------------cCC---------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------------R----------------LFT---------   80 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--------------~----------------~~d---------   80 (356)
                      ..|+|||+|..|+-+|..+++.|.+|+|+++.+....              .                ..|         
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   81 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS   81 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            4799999999999999999999999999988532100              0                001         


Q ss_pred             --------------------------------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC
Q 018416           81 --------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD  122 (356)
Q Consensus        81 --------------------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~  122 (356)
                                                            ..+.+.+.+.+++.||+++.+ .++.+.. +++.+..+.. +
T Consensus        82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~  158 (466)
T PRK08401         82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D  158 (466)
T ss_pred             HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence                                                  123334445556677887765 6666654 4566655655 5


Q ss_pred             CcEEecCeEEEecCCCC
Q 018416          123 GNRLPTDMVVVGIGIRP  139 (356)
Q Consensus       123 g~~i~~D~vi~a~G~~p  139 (356)
                      ++.+.++.||+|+|..+
T Consensus       159 g~~i~a~~VVLATGG~~  175 (466)
T PRK08401        159 GELLKFDATVIATGGFS  175 (466)
T ss_pred             CEEEEeCeEEECCCcCc
Confidence            66899999999999643

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.51  E-value=0.0012  Score=63.61  Aligned_cols=31  Identities=19%  Similarity=0.441  Sum_probs=29.5

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      +|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~   32 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERS   32 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5899999999999999999999999999985

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.51  E-value=0.0015  Score=67.94  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=31.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .-.|+|||||.+|+-+|..|+++|.+|+|+|+.
T Consensus        71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~  103 (627)
T PLN02464         71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERE  103 (627)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            357999999999999999999999999999996

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.48  E-value=0.0002  Score=73.36  Aligned_cols=107  Identities=16%  Similarity=0.173  Sum_probs=83.0

Q ss_pred             CCCcEEEECCchHHHHHHHH-------HHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEc
Q 018416           38 SGGNAVVIGGGYIGMECAAS-------LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  110 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~-------L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~  110 (356)
                      .++.++++|++++++|++..       +.+.|.+|+++...+..+.. ++..+...+.+.+++.||++++++.++++.. 
T Consensus       159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~-  236 (557)
T PRK07843        159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLG-MGQALAAGLRIGLQRAGVPVLLNTPLTDLYV-  236 (557)
T ss_pred             ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCccc-CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence            46778999999999999875       77788888887766555444 6788888999999999999999999999986 


Q ss_pred             CCCcEEEEEeC-CCc--EEecC-eEEEecC-CCCCchhhhc
Q 018416          111 SNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFEG  146 (356)
Q Consensus       111 ~~g~v~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~l~~~  146 (356)
                      +++++..+... +++  .+.++ .||+|+| +.+|.++.+.
T Consensus       237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~  277 (557)
T PRK07843        237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK  277 (557)
T ss_pred             eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence            46677666553 443  47785 6888765 7777766553

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.47  E-value=0.0018  Score=64.70  Aligned_cols=83  Identities=16%  Similarity=0.209  Sum_probs=53.3

Q ss_pred             CCCEEEeCCeeeEEEEcCCCcEEEEEeC-----------CC--cEEecCeEEEecCCCCCc--hh-hhcccccccCcEEE
Q 018416           94 KGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DG--NRLPTDMVVVGIGIRPNT--SL-FEGQLTLEKGGIKV  157 (356)
Q Consensus        94 ~GV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g--~~i~~D~vi~a~G~~p~~--~l-~~~~l~~~~g~I~v  157 (356)
                      +-+.+++..++.+|.+ +++++..+++.           .|  ++++||+|+-|+|++...  .+ ++..+...+|.+. 
T Consensus       324 r~i~l~F~~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~~g~pFd~~~~n~~grv~-  401 (506)
T PTZ00188        324 KIIEFIFYFEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFAENLYNQSVQMFKEDIG-  401 (506)
T ss_pred             eEEEEEccCCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCCCCCCccccCCCCCCccc-
Confidence            3467788888888875 34677777665           23  369999999999987543  11 1111222222222 


Q ss_pred             ecccccCCCCEEEEccccccCccccC
Q 018416          158 TGRLQSSNSSVYAVGDVAAFPLKLLG  183 (356)
Q Consensus       158 d~~l~ts~~~VyAiGD~~~~~~~~~g  183 (356)
                           +..|++|++|.+-..|.-+.|
T Consensus       402 -----~~~~g~Y~~GWiKrGP~GvIg  422 (506)
T PTZ00188        402 -----QHKFAIFKAGWFDKGPKGNIA  422 (506)
T ss_pred             -----CCCCCcEEeeecCcCCCceec
Confidence                 136999999999988765433

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.45  E-value=0.0017  Score=66.39  Aligned_cols=99  Identities=20%  Similarity=0.257  Sum_probs=71.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC---------------c---------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------R---------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~---------------~---------------------------   77 (356)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.+....               .                           
T Consensus        17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~   96 (541)
T PRK07804         17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV   96 (541)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            4799999999999999999999999999988642200               0                           


Q ss_pred             ---------------cC-----------------------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC
Q 018416           78 ---------------LF-----------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  113 (356)
Q Consensus        78 ---------------~~-----------------------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g  113 (356)
                                     .|                             ...+...+.+.+++.||+++.++.++++..+++|
T Consensus        97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g  176 (541)
T PRK07804         97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG  176 (541)
T ss_pred             HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence                           00                             1123344555566678899999999998764456


Q ss_pred             cEEEEEeC-------CC-cEEecCeEEEecCCC
Q 018416          114 KVVAVNLR-------DG-NRLPTDMVVVGIGIR  138 (356)
Q Consensus       114 ~v~~v~~~-------~g-~~i~~D~vi~a~G~~  138 (356)
                      ++..+...       ++ ..+.++.||+|+|-.
T Consensus       177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~  209 (541)
T PRK07804        177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL  209 (541)
T ss_pred             eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence            66665542       22 368999999999953

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.41  E-value=0.00047  Score=69.72  Aligned_cols=31  Identities=32%  Similarity=0.335  Sum_probs=29.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEee
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFP   70 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~   70 (356)
                      -.++|||+|+.|+.+|..++++|.+|+|+++
T Consensus         6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~   36 (499)
T PTZ00052          6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDY   36 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            3799999999999999999999999999995

>PRK07846 mycothione reductase; Reviewed

Probab=97.40  E-value=0.00046  Score=68.88  Aligned_cols=93  Identities=17%  Similarity=0.256  Sum_probs=58.8

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc--------cCCc--------------------------cCCH-HHH-
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------CMAR--------------------------LFTP-KIA-   84 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~--------~l~~--------------------------~~d~-~~~-   84 (356)
                      .++|||+|+.|..+|..  ..|.+|.++|+..-        +.|.                          .+|- ++. 
T Consensus         3 D~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~   80 (451)
T PRK07846          3 DLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIVS   80 (451)
T ss_pred             CEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHHH
Confidence            58999999999987754  56999999997520        0000                          0010 011 


Q ss_pred             ------HHH-----HHH-HHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           85 ------SYY-----EEY-YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        85 ------~~~-----~~~-l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                            +.+     ... +++.||+++.+.... +   ++.   .|++.+|+++.+|.+|+|||.+|...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~-~---~~~---~V~v~~g~~~~~d~lViATGs~p~~p  143 (451)
T PRK07846         81 RVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARF-I---GPK---TLRTGDGEEITADQVVIAAGSRPVIP  143 (451)
T ss_pred             HHHHHHHHHhccchhhhhhhhCCcEEEEEEEEE-e---cCC---EEEECCCCEEEeCEEEEcCCCCCCCC
Confidence                  111     112 556678888764321 2   222   45667788899999999999998654

>PRK08275 putative oxidoreductase; Provisional

Probab=97.39  E-value=0.0025  Score=65.35  Aligned_cols=100  Identities=18%  Similarity=0.215  Sum_probs=71.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCc---------------------------------cCCH---
Q 018416           40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR---------------------------------LFTP---   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~---------------------------------~~d~---   81 (356)
                      -.|+|||+|..|+-+|..+++.  |.+|+|+++.+.....                                 ..++   
T Consensus        10 ~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~v   89 (554)
T PRK08275         10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKAV   89 (554)
T ss_pred             cCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHHH
Confidence            3699999999999999999987  6899999987531000                                 0011   


Q ss_pred             ------------------------------------------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC
Q 018416           82 ------------------------------------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  113 (356)
Q Consensus        82 ------------------------------------------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g  113 (356)
                                                                      .+.+.+.+.+++.||+++.++.++++..++++
T Consensus        90 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g  169 (554)
T PRK08275         90 YAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDADG  169 (554)
T ss_pred             HHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCC
Confidence                                                            23344555566789999999999999764366


Q ss_pred             cEEEEEe---CCCc--EEecCeEEEecCCCC
Q 018416          114 KVVAVNL---RDGN--RLPTDMVVVGIGIRP  139 (356)
Q Consensus       114 ~v~~v~~---~~g~--~i~~D~vi~a~G~~p  139 (356)
                      ++..+..   .+|+  .+.++.||+|+|...
T Consensus       170 ~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        170 RVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             eEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            6665542   3554  478999999999643

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.38  E-value=0.0024  Score=65.59  Aligned_cols=32  Identities=19%  Similarity=0.393  Sum_probs=29.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~   32 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY   32 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            38999999999999999999999999998764

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.38  E-value=0.00078  Score=61.48  Aligned_cols=93  Identities=19%  Similarity=0.262  Sum_probs=63.9

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------cC---CH--------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------LF---TP--------------------   81 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------~~---d~--------------------   81 (356)
                      +++|||+|..|+-+|..|+..|.+||+++++.-+..+                +|   ++                    
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~   82 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP   82 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence            6999999999999999999999999999998322111                00   11                    


Q ss_pred             -----------------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCC
Q 018416           82 -----------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGI  137 (356)
Q Consensus        82 -----------------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~  137 (356)
                                             .|+... +.| ....++.++++|+++...+++  =.+..++| +...+|.|++++..
T Consensus        83 ~~~~~~~~~~~~~~d~~pyvg~pgmsala-k~L-AtdL~V~~~~rVt~v~~~~~~--W~l~~~~g~~~~~~d~vvla~PA  158 (331)
T COG3380          83 AVWTFTGDGSPPRGDEDPYVGEPGMSALA-KFL-ATDLTVVLETRVTEVARTDND--WTLHTDDGTRHTQFDDVVLAIPA  158 (331)
T ss_pred             cccccccCCCCCCCCCCccccCcchHHHH-HHH-hccchhhhhhhhhhheecCCe--eEEEecCCCcccccceEEEecCC
Confidence                                   122222 222 224567788899988764333  34666555 56789999999875

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.36  E-value=0.0003  Score=51.08  Aligned_cols=34  Identities=26%  Similarity=0.307  Sum_probs=30.3

Q ss_pred             EECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416           44 VIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus        44 VvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      |||+|..|+.+|..|++.|.+|+|+|+.+.+...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~   34 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR   34 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence            8999999999999999999999999999886543

...

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.34  E-value=0.0027  Score=63.02  Aligned_cols=61  Identities=15%  Similarity=0.188  Sum_probs=43.8

Q ss_pred             HHHHHHHhCCCEEEeCCeeeEEEEcC-CCcEEEEEeCC-CcEEecCeEEEecC-CCCCchhhhc
Q 018416           86 YYEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNLRD-GNRLPTDMVVVGIG-IRPNTSLFEG  146 (356)
Q Consensus        86 ~~~~~l~~~GV~v~~~~~v~~i~~~~-~g~v~~v~~~~-g~~i~~D~vi~a~G-~~p~~~l~~~  146 (356)
                      .+.+.+++.|+++++++.++++..++ ++.+..+...+ +..+.++.||+|+| +..|.++...
T Consensus       128 ~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~  191 (432)
T TIGR02485       128 ALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK  191 (432)
T ss_pred             HHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence            34445667789999999999987643 56666665543 35799999999999 5556666543

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.32  E-value=0.0021  Score=63.31  Aligned_cols=102  Identities=20%  Similarity=0.261  Sum_probs=65.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCC---CcEEEEeeCCccCCc---------------------c-----------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINK---INVTMVFPEAHCMAR---------------------L-----------------   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G---~~Vtlv~~~~~~l~~---------------------~-----------------   78 (356)
                      .+|+|||+|+.|+.+|..|.+.-   ..|+++++.+++...                     +                 
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            47999999999999999998751   139999988554211                     0                 


Q ss_pred             --------------------CCHHHHHHHHHHHHhCC---CEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEec
Q 018416           79 --------------------FTPKIASYYEEYYKSKG---VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  135 (356)
Q Consensus        79 --------------------~d~~~~~~~~~~l~~~G---V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  135 (356)
                                          |...+.+.+...+++.-   |.++ .++.+.+...+++....+...+|....+|.+|++|
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                                01112223333333322   4444 33444554434555566777899999999999999


Q ss_pred             CCCCCch
Q 018416          136 GIRPNTS  142 (356)
Q Consensus       136 G~~p~~~  142 (356)
                      |..+...
T Consensus       161 gh~~~~~  167 (474)
T COG4529         161 GHSAPPA  167 (474)
T ss_pred             cCCCCCc
Confidence            9765543

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.32  E-value=0.0019  Score=64.25  Aligned_cols=98  Identities=23%  Similarity=0.313  Sum_probs=66.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------cCCH-H
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFTP-K   82 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------~~d~-~   82 (356)
                      -.++|||+|+.|.-+|..+++.|.+|.++++.+.+...                                    .+|- +
T Consensus         5 yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~~~   84 (454)
T COG1249           5 YDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDFEK   84 (454)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCHHH
Confidence            36999999999999999999999999999998532100                                    0111 0


Q ss_pred             -----------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           83 -----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        83 -----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                                 ....++..++++||+++.+.-  ++.  +++.+ .|...+.+++++|.+|+|||.+|...
T Consensus        85 ~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a--~f~--~~~~v-~V~~~~~~~~~a~~iiIATGS~p~~~  150 (454)
T COG1249          85 LLARKDKVVRLLTGGVEGLLKKNGVDVIRGEA--RFV--DPHTV-EVTGEDKETITADNIIIATGSRPRIP  150 (454)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEE--EEC--CCCEE-EEcCCCceEEEeCEEEEcCCCCCcCC
Confidence                       112234455667999987753  343  23322 23222247899999999999999754

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.31  E-value=0.00023  Score=70.88  Aligned_cols=65  Identities=18%  Similarity=0.173  Sum_probs=50.6

Q ss_pred             CCccCCCCCCCCCCeEEeCC--HHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416            4 KLEEFGLSGSDAENVCYLRD--LADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~--~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      .|+.+.|+|.+.-+.-.+++  ..+.+.       ..+|+|+|||+|.+|+++|..|.+.|.+||++.|++...
T Consensus       145 ~P~iP~~~G~~~f~g~~~HS~~~~~~~~-------~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~  211 (443)
T COG2072         145 EPYIPDFAGLDEFKGRILHSADWPNPED-------LRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI  211 (443)
T ss_pred             CCCCCCCCCccCCCceEEchhcCCCccc-------cCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence            58889999987543333333  223322       379999999999999999999999999999999987643

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.31  E-value=0.0042  Score=63.18  Aligned_cols=54  Identities=28%  Similarity=0.427  Sum_probs=40.9

Q ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEc-CC--CcEEEEEeC-CCc-----EEecCeEEEecCCC
Q 018416           85 SYYEEYYKSKGVKFVKGTVLSSFDVD-SN--GKVVAVNLR-DGN-----RLPTDMVVVGIGIR  138 (356)
Q Consensus        85 ~~~~~~l~~~GV~v~~~~~v~~i~~~-~~--g~v~~v~~~-~g~-----~i~~D~vi~a~G~~  138 (356)
                      ..+.+.|+++||+|+++++|+++..+ ++  +++..++.. +|+     ..+.|.||+++|.-
T Consensus       230 ~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~  292 (576)
T PRK13977        230 LPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI  292 (576)
T ss_pred             HHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence            44677889999999999999999863 23  567777764 332     35789999999953

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.31  E-value=0.0035  Score=63.26  Aligned_cols=54  Identities=13%  Similarity=0.197  Sum_probs=39.2

Q ss_pred             HHHHHHHHHh----CC--CEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           84 ASYYEEYYKS----KG--VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        84 ~~~~~~~l~~----~G--V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                      ...+.+.+++    +|  ++++++++|++++.. ++....|++.+| ++.+|.||+|+|...
T Consensus       214 ~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S  273 (497)
T PTZ00383        214 SESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYS  273 (497)
T ss_pred             HHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhH
Confidence            3344556666    67  888999999999863 244455777666 699999999999543

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.30  E-value=0.0037  Score=62.09  Aligned_cols=55  Identities=11%  Similarity=0.219  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEE-eCCCc--EEecCeEEEecCCC
Q 018416           83 IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVN-LRDGN--RLPTDMVVVGIGIR  138 (356)
Q Consensus        83 ~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~-~~~g~--~i~~D~vi~a~G~~  138 (356)
                      +.+.+.+.+++ .||++++++.++++.. +++++..+. ..+++  .+.++.||+|+|--
T Consensus       130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~  188 (433)
T PRK06175        130 VEKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGGI  188 (433)
T ss_pred             HHHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence            33444555554 5999999999999875 456665543 33454  58999999999953

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.30  E-value=0.0031  Score=59.33  Aligned_cols=54  Identities=20%  Similarity=0.353  Sum_probs=44.0

Q ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEE-cCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           85 SYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        85 ~~~~~~l~~~GV~v~~~~~v~~i~~-~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      ..++..+++.|+.++.+..++.++- ++++..+.|.+++|..+.++.+|+++|.-
T Consensus       157 k~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW  211 (399)
T KOG2820|consen  157 KALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW  211 (399)
T ss_pred             HHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence            4456778889999999999888752 34566678999999999999999999943

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.30  E-value=0.0025  Score=64.65  Aligned_cols=32  Identities=25%  Similarity=0.310  Sum_probs=30.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      -.|+|||||.+|+-+|..|+++|.+|+|+|+.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~   38 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQD   38 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            47999999999999999999999999999986

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.28  E-value=0.0035  Score=64.87  Aligned_cols=31  Identities=26%  Similarity=0.255  Sum_probs=29.1

Q ss_pred             EEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           42 AVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        42 vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      |+|||+|..|+-+|..+++.|.+|.|+++.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            6899999999999999999999999999875

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.0023  Score=56.86  Aligned_cols=99  Identities=16%  Similarity=0.223  Sum_probs=72.9

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC--------------------CccCCccCCHHHHHHHHHHHHhCCCEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE--------------------AHCMARLFTPKIASYYEEYYKSKGVKF   98 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~--------------------~~~l~~~~d~~~~~~~~~~l~~~GV~v   98 (356)
                      ..+|+|||+|+.+.-.|..+++.-.+-.+++-.                    |-+-.....+++.+.+++.-++.|-++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            358999999999999999999987776666542                    222223357899999999999999999


Q ss_pred             EeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416           99 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        99 ~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      ++++ |.+++.  .+....+. +|.+.+.+|.||+++|.....
T Consensus        88 ~tEt-Vskv~~--sskpF~l~-td~~~v~~~avI~atGAsAkR  126 (322)
T KOG0404|consen   88 ITET-VSKVDL--SSKPFKLW-TDARPVTADAVILATGASAKR  126 (322)
T ss_pred             eeee-hhhccc--cCCCeEEE-ecCCceeeeeEEEecccceee
Confidence            9764 556643  22223343 466789999999999976543

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.27  E-value=0.00043  Score=71.26  Aligned_cols=102  Identities=15%  Similarity=0.203  Sum_probs=80.5

Q ss_pred             CCCcEEEECCch--HHHHHHHHHHHCCCcEEEEeeCCccCCccCC--------------HHHHHHHHHHHHhCCCEEEeC
Q 018416           38 SGGNAVVIGGGY--IGMECAASLVINKINVTMVFPEAHCMARLFT--------------PKIASYYEEYYKSKGVKFVKG  101 (356)
Q Consensus        38 ~~~~vvVvGgG~--iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d--------------~~~~~~~~~~l~~~GV~v~~~  101 (356)
                      .++++.|+|+|+  ++.|++..+...+.+++++.+.+.+++. ++              ..+.+.+.+.+++.||+++++
T Consensus       156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~  234 (574)
T PRK12842        156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATH-LKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTG  234 (574)
T ss_pred             CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhh-HHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeC
Confidence            467899999999  9999999999999999988777666543 22              457777888889999999999


Q ss_pred             CeeeEEEEcCCCcEEEEEeCC--Cc-EEecC-eEEEecCCCCCc
Q 018416          102 TVLSSFDVDSNGKVVAVNLRD--GN-RLPTD-MVVVGIGIRPNT  141 (356)
Q Consensus       102 ~~v~~i~~~~~g~v~~v~~~~--g~-~i~~D-~vi~a~G~~p~~  141 (356)
                      +.++++.. +++++..+...+  ++ .+.++ .||+|+|..++.
T Consensus       235 ~~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n  277 (574)
T PRK12842        235 TPARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSHD  277 (574)
T ss_pred             CEEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccch
Confidence            99999986 467776666543  33 47786 799999977644

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.26  E-value=0.0023  Score=64.48  Aligned_cols=31  Identities=29%  Similarity=0.263  Sum_probs=29.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHC-CCcEEEEee
Q 018416           40 GNAVVIGGGYIGMECAASLVIN-KINVTMVFP   70 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~-G~~Vtlv~~   70 (356)
                      -.++|||+|+.|..+|..++++ |.+|.+|++
T Consensus         4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~   35 (486)
T TIGR01423         4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDV   35 (486)
T ss_pred             cCEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence            3699999999999999999997 999999996

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR00551 nadB L-aspartate oxidase

Probab=97.23  E-value=0.004  Score=62.81  Aligned_cols=97  Identities=19%  Similarity=0.253  Sum_probs=69.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------------------------------ccCC---------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------------------------------RLFT---------   80 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------------------------------~~~d---------   80 (356)
                      .|+|||+|..|+-+|..+++.|. |+|+++.+....                               ...|         
T Consensus         4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   82 (488)
T TIGR00551         4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFVVS   82 (488)
T ss_pred             cEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence            69999999999999999999997 999988732100                               0001         


Q ss_pred             ---------------------------------------------HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCc
Q 018416           81 ---------------------------------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGK  114 (356)
Q Consensus        81 ---------------------------------------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~  114 (356)
                                                                   ..+...+.+.+++ .||+++.++.++++.. +++.
T Consensus        83 ~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~  161 (488)
T TIGR00551        83 DARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLI-ETGR  161 (488)
T ss_pred             hHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeec-cCCE
Confidence                                                         1233444555555 5899999999999876 4566


Q ss_pred             EEEEEeCC-C--cEEecCeEEEecCCCC
Q 018416          115 VVAVNLRD-G--NRLPTDMVVVGIGIRP  139 (356)
Q Consensus       115 v~~v~~~~-g--~~i~~D~vi~a~G~~p  139 (356)
                      +..+...+ +  ..+.++.||+|+|...
T Consensus       162 v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       162 VVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             EEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            65554433 3  3689999999999654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.23  E-value=0.0049  Score=64.27  Aligned_cols=47  Identities=26%  Similarity=0.326  Sum_probs=36.0

Q ss_pred             HHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---CCc--EEecCeEEEecCC
Q 018416           90 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGI  137 (356)
Q Consensus        90 ~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~  137 (356)
                      .+++.||+++.++.++++.. +++++..+...   +|+  .+.++.||+|+|-
T Consensus       179 ~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG  230 (640)
T PRK07573        179 QIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGG  230 (640)
T ss_pred             HHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence            45567899999999999875 45777766653   453  5899999999995

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.23  E-value=0.0049  Score=63.92  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=30.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~   72 (356)
                      -.|+|||+|..|+-+|..+++.  |.+|.|+++.+
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~   46 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN   46 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            3799999999999999999998  99999999864

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.22  E-value=0.0048  Score=63.89  Aligned_cols=52  Identities=21%  Similarity=0.229  Sum_probs=38.0

Q ss_pred             HHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe---CCCc--EEecCeEEEecCC
Q 018416           86 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGI  137 (356)
Q Consensus        86 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~vi~a~G~  137 (356)
                      .+.+.+++.||++++++.++++..+++|++..+..   .+|+  .+.++.||+|+|-
T Consensus       154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  210 (598)
T PRK09078        154 TLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG  210 (598)
T ss_pred             HHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence            34444556789999999999987644477777653   3564  5889999999994

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.21  E-value=0.0048  Score=63.12  Aligned_cols=98  Identities=19%  Similarity=0.256  Sum_probs=69.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------------------------------cCC-------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------LFT-------   80 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------------------------------~~d-------   80 (356)
                      -.|+|||+|..|+-+|..+ +.|.+|+|+++.+.....                                ..|       
T Consensus         8 ~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~~   86 (543)
T PRK06263          8 TDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEIL   86 (543)
T ss_pred             cCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            4799999999999999999 889999999986421000                                001       


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC
Q 018416           81 -----------------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  113 (356)
Q Consensus        81 -----------------------------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g  113 (356)
                                                                     .++...+.+.+++.||++++++.++++..++++
T Consensus        87 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~  166 (543)
T PRK06263         87 VKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDENR  166 (543)
T ss_pred             HHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCc
Confidence                                                           122333444556678999999999998764444


Q ss_pred             cEEEEEe---CCCc--EEecCeEEEecCCC
Q 018416          114 KVVAVNL---RDGN--RLPTDMVVVGIGIR  138 (356)
Q Consensus       114 ~v~~v~~---~~g~--~i~~D~vi~a~G~~  138 (356)
                      ++..+..   .+|+  .+.++.||+|+|--
T Consensus       167 ~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  196 (543)
T PRK06263        167 EVIGAIFLDLRNGEIFPIYAKATILATGGA  196 (543)
T ss_pred             EEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence            4665543   4554  58899999999953

>TIGR03452 mycothione_red mycothione reductase

Probab=97.18  E-value=0.0014  Score=65.44  Aligned_cols=92  Identities=17%  Similarity=0.277  Sum_probs=57.9

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC---------C------------------c--------cCC-HH--
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------A------------------R--------LFT-PK--   82 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l---------~------------------~--------~~d-~~--   82 (356)
                      .++|||+|+.|..+|.  +..|.+|.+||+.. +.         |                  +        .+| +.  
T Consensus         4 D~vvIG~G~~g~~aa~--~~~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~   80 (452)
T TIGR03452         4 DLIIIGTGSGNSIPDP--RFADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDIV   80 (452)
T ss_pred             CEEEECCCHHHHHHHH--HHCCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHHH
Confidence            6899999999988754  45799999999852 10         0                  0        011 00  


Q ss_pred             ------HHHHHH----HH-H--HhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           83 ------IASYYE----EY-Y--KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        83 ------~~~~~~----~~-l--~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                            ..+.+.    +. +  ++.||+++.++..  +.  ++   ..|.+.+|+++.+|.+|+|||.+|...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~--~~--~~---~~V~~~~g~~~~~d~lIiATGs~p~~p  146 (452)
T TIGR03452        81 SRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHAR--FV--GP---RTLRTGDGEEITGDQIVIAAGSRPYIP  146 (452)
T ss_pred             HHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEE--Ee--cC---CEEEECCCcEEEeCEEEEEECCCCCCC
Confidence                  111111    11 1  2268888877643  22  12   235566788899999999999998643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.18  E-value=0.0055  Score=63.63  Aligned_cols=32  Identities=28%  Similarity=0.299  Sum_probs=30.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus        30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~   61 (617)
T PTZ00139         30 YDAVVVGAGGAGLRAALGLVELGYKTACISKL   61 (617)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence            36999999999999999999999999999886

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.18  E-value=0.0019  Score=64.27  Aligned_cols=83  Identities=20%  Similarity=0.222  Sum_probs=60.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+|+++|+|+|.+|+.+|..|++.|++|+++++.+.       +.+ +...+.|.+.|++++.+....+           
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~-~~~~~~l~~~~~~~~~~~~~~~-----------   64 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQL-KEALEELGELGIELVLGEYPEE-----------   64 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHH-HHHHHHHHhcCCEEEeCCcchh-----------
Confidence            478999999999999999999999999999987642       122 2223456777887765433210           


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                            ..-.+|.||.++|..|+.....
T Consensus        65 ------~~~~~d~vv~~~g~~~~~~~~~   86 (450)
T PRK14106         65 ------FLEGVDLVVVSPGVPLDSPPVV   86 (450)
T ss_pred             ------HhhcCCEEEECCCCCCCCHHHH
Confidence                  1124799999999988877553

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.17  E-value=0.0045  Score=63.64  Aligned_cols=97  Identities=24%  Similarity=0.228  Sum_probs=69.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc--------------CC-----c-----------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--------------MA-----R-----------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~--------------l~-----~-----------------------   77 (356)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.+..              ++     .                       
T Consensus         6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v   85 (566)
T PRK06452          6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDAA   85 (566)
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHHH
Confidence            47999999999999999999999999999876321              00     0                       


Q ss_pred             -------------------cC----------------------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEc
Q 018416           78 -------------------LF----------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  110 (356)
Q Consensus        78 -------------------~~----------------------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~  110 (356)
                                         .|                            ...+...+.+.+++.||+++.++.++++.. 
T Consensus        86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~-  164 (566)
T PRK06452         86 ELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLVT-  164 (566)
T ss_pred             HHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEEE-
Confidence                               00                            011223344445567899999999999876 


Q ss_pred             CCCcEEEEEeC---CCc--EEecCeEEEecCC
Q 018416          111 SNGKVVAVNLR---DGN--RLPTDMVVVGIGI  137 (356)
Q Consensus       111 ~~g~v~~v~~~---~g~--~i~~D~vi~a~G~  137 (356)
                      ++|++..+...   +++  .+.++.||+|+|-
T Consensus       165 ~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  196 (566)
T PRK06452        165 DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG  196 (566)
T ss_pred             ECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence            46888776543   332  5789999999993

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.16  E-value=0.00053  Score=67.29  Aligned_cols=36  Identities=25%  Similarity=0.197  Sum_probs=33.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      ++|+|||||++|+|+|..|+++|++|+|+++++...
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~   38 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK   38 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence            589999999999999999999999999999877654

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.16  E-value=0.0041  Score=63.00  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=30.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      -.|+|||||.+|+-+|..|+++|.+|.|+|+.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~   38 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD   38 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            47999999999999999999999999999987

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.14  E-value=0.0081  Score=61.94  Aligned_cols=58  Identities=21%  Similarity=0.360  Sum_probs=40.7

Q ss_pred             HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-Cc--EEec-CeEEEecCC-CCCchhhh
Q 018416           87 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GN--RLPT-DMVVVGIGI-RPNTSLFE  145 (356)
Q Consensus        87 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~--~i~~-D~vi~a~G~-~p~~~l~~  145 (356)
                      +.+.+++.||++++++.++++.. +++++..|...+ ++  ++.+ +.||+|+|- ..|.++.+
T Consensus       227 L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~  289 (578)
T PRK12843        227 LLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRR  289 (578)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHH
Confidence            44555667999999999999876 467777776543 33  4776 789999984 44555554

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.13  E-value=0.0032  Score=61.43  Aligned_cols=85  Identities=19%  Similarity=0.305  Sum_probs=67.7

Q ss_pred             HHHHCCCcEEEE-eeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEec
Q 018416           57 SLVINKINVTMV-FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  135 (356)
Q Consensus        57 ~L~~~G~~Vtlv-~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  135 (356)
                      .+...|...-++ .+.+|+... .-+++.+.+.+.|++.|++++++++|..++. +++.+..+.+++|+++++|.||+|+
T Consensus       149 e~~aa~a~~eil~~~~rHiGTD-~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~  226 (486)
T COG2509         149 EFRAAGAGEEILPIYQRHIGTD-ILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAP  226 (486)
T ss_pred             HHHHhCCCceeeeccccccCcc-chHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEcc
Confidence            334455555444 345566554 6788999999999999999999999999987 5666778899999999999999999


Q ss_pred             CCCCCchh
Q 018416          136 GIRPNTSL  143 (356)
Q Consensus       136 G~~p~~~l  143 (356)
                      |+.....+
T Consensus       227 Grsg~dw~  234 (486)
T COG2509         227 GRSGRDWF  234 (486)
T ss_pred             CcchHHHH
Confidence            99877654

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.10  E-value=0.0074  Score=62.33  Aligned_cols=31  Identities=29%  Similarity=0.389  Sum_probs=29.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus         9 DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~   39 (588)
T PRK08958          9 DAVVIGAGGAGMRAALQISQSGQSCALLSKV   39 (588)
T ss_pred             CEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence            6999999999999999999999999999986

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.09  E-value=0.0073  Score=62.24  Aligned_cols=53  Identities=13%  Similarity=0.148  Sum_probs=38.4

Q ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE---eCCCc--EEecCeEEEecCCC
Q 018416           85 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGN--RLPTDMVVVGIGIR  138 (356)
Q Consensus        85 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~---~~~g~--~i~~D~vi~a~G~~  138 (356)
                      ..+.+.+++.||+++.++.++++.. +++++..+.   +.+++  .+.++.||+|+|--
T Consensus       139 ~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~  196 (575)
T PRK05945        139 HELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY  196 (575)
T ss_pred             HHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence            3345556667899999999999875 466665553   34554  58999999999964

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.09  E-value=0.01  Score=61.32  Aligned_cols=57  Identities=19%  Similarity=0.332  Sum_probs=41.0

Q ss_pred             HHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CCc--EEecC-eEEEecC-CCCCchhhhc
Q 018416           90 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFEG  146 (356)
Q Consensus        90 ~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~l~~~  146 (356)
                      ..++.|+++++++.++++..+++|++..|... +++  .+.+. .||+|+| +.-|.++.+.
T Consensus       222 ~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~  283 (584)
T PRK12835        222 ALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE  283 (584)
T ss_pred             HHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence            34567899999999999987667888776553 343  46787 6999887 5666666553

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.06  E-value=0.0017  Score=64.61  Aligned_cols=96  Identities=20%  Similarity=0.285  Sum_probs=66.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC------------------------------------------Cc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------------------------------AR   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l------------------------------------------~~   77 (356)
                      -.|+|||||-.|+|.|.+.+|.|+++.++.....-.                                          ..
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~   84 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS   84 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence            479999999999999999999999999887652110                                          00


Q ss_pred             -----------cCCHH-HHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCC-cEEEEEeCCCcEEecCeEEEecCC
Q 018416           78 -----------LFTPK-IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        78 -----------~~d~~-~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g-~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                                 +.|.. ..+.+++.++. .++.++.+ .|+++.. +++ .+..|.+.+|..+.|+.||+++|.
T Consensus        85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~-e~~~~v~GV~t~~G~~~~a~aVVlTTGT  156 (621)
T COG0445          85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIV-EEGQRVVGVVTADGPEFHAKAVVLTTGT  156 (621)
T ss_pred             CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhh-cCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence                       01111 12233344433 46666644 4555544 344 588999999999999999999995

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.05  E-value=0.0017  Score=69.19  Aligned_cols=33  Identities=30%  Similarity=0.328  Sum_probs=31.0

Q ss_pred             cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCc
Q 018416           41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAH   73 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~   73 (356)
                      +|+|||||+.|+-+|..|++.  |++|+|+|+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            699999999999999999998  899999999875

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.05  E-value=0.0032  Score=60.74  Aligned_cols=35  Identities=26%  Similarity=0.466  Sum_probs=32.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      .+|+|||||..|+-.|..|.++|.+|+++|.++.+
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            58999999999999999999999999999997544

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.00  E-value=0.011  Score=61.00  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~   44 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV   44 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            47999999999999999999999999999985

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=96.99  E-value=0.0098  Score=61.94  Aligned_cols=31  Identities=29%  Similarity=0.411  Sum_probs=29.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus        52 DVlVIG~G~AGl~AAl~Aae~G~~VilveK~   82 (635)
T PLN00128         52 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL   82 (635)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence            6999999999999999999999999999886

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.95  E-value=0.01  Score=61.77  Aligned_cols=33  Identities=27%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus         9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~   41 (626)
T PRK07803          9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL   41 (626)
T ss_pred             ecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            379999999999999999999999999998863

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.91  E-value=0.016  Score=59.88  Aligned_cols=55  Identities=15%  Similarity=0.128  Sum_probs=39.5

Q ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEcCC---CcEEEEEe---CCCc--EEecCeEEEecCCCC
Q 018416           85 SYYEEYYKSKGVKFVKGTVLSSFDVDSN---GKVVAVNL---RDGN--RLPTDMVVVGIGIRP  139 (356)
Q Consensus        85 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~---g~v~~v~~---~~g~--~i~~D~vi~a~G~~p  139 (356)
                      ..+.+.+++.||+++.++.++++..+++   |++..+..   .+++  .+.++.||+|+|-..
T Consensus       144 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        144 QTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            3455556678999999999999875332   67766643   3554  578999999999643

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.89  E-value=0.014  Score=60.25  Aligned_cols=32  Identities=22%  Similarity=0.461  Sum_probs=29.5

Q ss_pred             cEEEECCchHHHHHHHHHHHCC---CcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLVINK---INVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G---~~Vtlv~~~~   72 (356)
                      .|+|||+|..|+-+|..+++.|   .+|+|+++.+
T Consensus         7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~   41 (577)
T PRK06069          7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ   41 (577)
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence            6999999999999999999998   8999999763

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.85  E-value=0.0086  Score=62.48  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=29.4

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .++|||+|+.|..+|..++++|.+|.+|++.
T Consensus       118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        118 DVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            6999999999999999999999999999964

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=96.83  E-value=0.017  Score=59.54  Aligned_cols=54  Identities=17%  Similarity=0.210  Sum_probs=38.9

Q ss_pred             HHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC--CCc-EEec-CeEEEecCCCCC
Q 018416           86 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN-RLPT-DMVVVGIGIRPN  140 (356)
Q Consensus        86 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~--~g~-~i~~-D~vi~a~G~~p~  140 (356)
                      .+.+.+++.|+++++++.++++.. +++++..+...  ++. ++.+ +.||+|+|.-.+
T Consensus       222 ~L~~~a~~~Gv~i~~~t~v~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        222 RLLKSAEDLGVRIWESAPARELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            344456778999999999999876 36776665442  332 5788 999999986554

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.78  E-value=0.016  Score=59.81  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=30.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      +..|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~   35 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV   35 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence            457999999999999999999999999999964

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.77  E-value=0.0042  Score=52.07  Aligned_cols=83  Identities=22%  Similarity=0.263  Sum_probs=56.1

Q ss_pred             EEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC
Q 018416           42 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR  121 (356)
Q Consensus        42 vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~  121 (356)
                      ++|+|+|.+|.-+|..|++.|.+|+++.|.++              .+.+++.|+.+.....-..+..       .....
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~--------------~~~~~~~g~~~~~~~~~~~~~~-------~~~~~   59 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPR--------------LEAIKEQGLTITGPDGDETVQP-------PIVIS   59 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHHH--------------HHHHHHHCEEEEETTEEEEEEE-------EEEES
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEcccc--------------HHhhhheeEEEEecccceeccc-------ccccC
Confidence            68999999999999999999999999987641              2347788999887662222211       12222


Q ss_pred             CC--cEEecCeEEEecCCCCCchhhh
Q 018416          122 DG--NRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       122 ~g--~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                      +.  ..-++|.||+++=.......++
T Consensus        60 ~~~~~~~~~D~viv~vKa~~~~~~l~   85 (151)
T PF02558_consen   60 APSADAGPYDLVIVAVKAYQLEQALQ   85 (151)
T ss_dssp             SHGHHHSTESEEEE-SSGGGHHHHHH
T ss_pred             cchhccCCCcEEEEEecccchHHHHH
Confidence            22  3356899999976554444433

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.76  E-value=0.0069  Score=59.41  Aligned_cols=32  Identities=31%  Similarity=0.360  Sum_probs=29.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      -.|+|||||-.|+|.|.+.+|.|.+.+++...
T Consensus        29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            37999999999999999999999999998775

>PRK08071 L-aspartate oxidase; Provisional

Probab=96.75  E-value=0.012  Score=59.80  Aligned_cols=32  Identities=22%  Similarity=0.459  Sum_probs=28.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..|+|||+|..|+-+|..+++ |.+|+++++.+
T Consensus         4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~   35 (510)
T PRK08071          4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKKT   35 (510)
T ss_pred             cCEEEECccHHHHHHHHHhhc-CCCEEEEeccC
Confidence            479999999999999999976 89999998864

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.72  E-value=0.012  Score=55.15  Aligned_cols=101  Identities=25%  Similarity=0.254  Sum_probs=71.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------------------------c--------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------L--------------   78 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------------------------~--------------   78 (356)
                      ...|||||+|..|+..+..+...|-.|++++....+...                          .              
T Consensus         9 lspvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~   88 (477)
T KOG2404|consen    9 LSPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGV   88 (477)
T ss_pred             CCcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCc
Confidence            346999999999999999999998889999886322100                          0              


Q ss_pred             ------------------------------------------------CCHHHHHHHHHHHHhC------CCEEEeCCee
Q 018416           79 ------------------------------------------------FTPKIASYYEEYYKSK------GVKFVKGTVL  104 (356)
Q Consensus        79 ------------------------------------------------~d~~~~~~~~~~l~~~------GV~v~~~~~v  104 (356)
                                                                      -.-++...+...|++.      -+++.++++|
T Consensus        89 ~eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskv  168 (477)
T KOG2404|consen   89 PELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKV  168 (477)
T ss_pred             HHHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhccee
Confidence                                                            0113334444444431      3778899999


Q ss_pred             eEEEEcCCCcEEEEEeCC--C--cEEecCeEEEecCCCCC
Q 018416          105 SSFDVDSNGKVVAVNLRD--G--NRLPTDMVVVGIGIRPN  140 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~--g--~~i~~D~vi~a~G~~p~  140 (356)
                      +.+.. .+|++..|+.-|  |  ..+.+|.|++|+|--..
T Consensus       169 v~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y  207 (477)
T KOG2404|consen  169 VDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY  207 (477)
T ss_pred             eeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence            99986 688888777643  4  35889999999985544

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.71  E-value=0.0021  Score=64.74  Aligned_cols=40  Identities=23%  Similarity=0.304  Sum_probs=37.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      +.++|+|||+|.+|+-+|..|.+.|.+|+|+|.++++..+
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR   53 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR   53 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence            4679999999999999999999999999999999988655

>PRK05320 rhodanese superfamily protein; Provisional

Probab=96.71  E-value=0.0019  Score=59.48  Aligned_cols=72  Identities=14%  Similarity=0.030  Sum_probs=61.8

Q ss_pred             EEEeCCCHHHHHHHHHHHHcCCCcCcHHH-HhhcCCCcccCcCC----CCCCCCccccccccccccCccccchhhhhhHH
Q 018416          263 SFLEGGTKEEYEAIAKATRLQPVVEDLAE-LETQGLGFALAVSQ----KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVI  337 (356)
Q Consensus       263 a~~vg~~~~~~~~~a~ai~~~~~~~dl~~-l~~~~~~yap~~~~----~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~  337 (356)
                      +++-| ..++++.++.+|+.+++++||.. ++   ++|+|||++    ++++.+.+++.+.|.+.+..+.++++|+.+..
T Consensus        46 ~t~~g-~~~~id~~~~~l~~~~~~~dl~~k~~---~~~~~pF~~l~vk~k~eiv~~g~~~~n~~~~~~~~is~~el~~~l  121 (257)
T PRK05320         46 LFLAG-TREAIDAFYAWLRADARFADLQVKES---LSDSQPFRRMLVKLKREIITMKRPAIRPELGRAPSVDAATLKRWL  121 (257)
T ss_pred             EEEEe-eHHHHHHHHHHHhhCCCccCceeecc---cccCCCchhccchhhhHHhhcCCcccCcccCcCceeCHHHHHHHH
Confidence            34445 46789999999999999999987 77   899999999    89999999998999999999999998887654


Q ss_pred             H
Q 018416          338 L  338 (356)
Q Consensus       338 ~  338 (356)
                      .
T Consensus       122 ~  122 (257)
T PRK05320        122 D  122 (257)
T ss_pred             h
Confidence            3

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=96.71  E-value=0.022  Score=59.63  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=29.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      -.|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus         6 ~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~   37 (657)
T PRK08626          6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLSLV   37 (657)
T ss_pred             ccEEEECccHHHHHHHHHHHHcCCCEEEEeCC
Confidence            36999999999999999999999999999865

>PRK07395 L-aspartate oxidase; Provisional

Probab=96.70  E-value=0.012  Score=60.32  Aligned_cols=32  Identities=22%  Similarity=0.418  Sum_probs=28.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      -.|+|||+|..|+-+|..++ .|.+|.|+++.+
T Consensus        10 ~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~   41 (553)
T PRK07395         10 FDVLVVGSGAAGLYAALCLP-SHLRVGLITKDT   41 (553)
T ss_pred             CCEEEECccHHHHHHHHHhh-cCCCEEEEEccC
Confidence            46999999999999999986 499999999864

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=96.67  E-value=0.022  Score=63.51  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=31.8

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .-.|||||+|..|+-+|...++.|.+|.++|+.+.
T Consensus       409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~  443 (1167)
T PTZ00306        409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK  443 (1167)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence            45799999999999999999999999999998743

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.66  E-value=0.013  Score=57.79  Aligned_cols=125  Identities=22%  Similarity=0.388  Sum_probs=76.1

Q ss_pred             CCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC---C--cEEecCeEEEecC
Q 018416           62 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIG  136 (356)
Q Consensus        62 G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G  136 (356)
                      ..+|+++...-+-+.    ...-++..+.=++.||+++.+ ++.+|...+++.+ .|...|   |  .++++|+|++++|
T Consensus       400 d~~v~I~YmDiRafG----~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l-~V~~EdTl~g~~~e~~~DLVVLa~G  473 (622)
T COG1148         400 DTDVTIYYMDIRAFG----KDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKL-IVRVEDTLTGEVKEIEADLVVLATG  473 (622)
T ss_pred             CcceeEEEEEeeccC----ccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCee-EEEEEeccCccceecccceEEEeec
Confidence            457888766554333    223333333334779999977 5566665556652 233332   3  4689999999999


Q ss_pred             CCCCchh---hhc-cccc-ccCcEEEe-ccc---ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHH
Q 018416          137 IRPNTSL---FEG-QLTL-EKGGIKVT-GRL---QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVA  203 (356)
Q Consensus       137 ~~p~~~l---~~~-~l~~-~~g~I~vd-~~l---~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~  203 (356)
                      ..|....   ..- ++.. ++|+++.. +.+   +|+.++||.+|-|..+.+           ++.++.||..||.
T Consensus       474 mep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkd-----------I~~siaqa~aAA~  538 (622)
T COG1148         474 MEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKD-----------IADSIAQAKAAAA  538 (622)
T ss_pred             cccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCcc-----------HHHHHHHhHHHHH
Confidence            9986542   221 1333 56777654 333   457899999998876543           4455556665553

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=96.63  E-value=0.034  Score=56.49  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=29.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      -.|||||+| +|+-+|..+++.|.+|+|+++.+
T Consensus         8 ~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~   39 (513)
T PRK12837          8 VDVLVAGSG-GGVAGAYTAAREGLSVALVEATD   39 (513)
T ss_pred             cCEEEECch-HHHHHHHHHHHCCCcEEEEecCC
Confidence            479999999 99999999999999999999764

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=96.62  E-value=0.029  Score=57.46  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=30.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      -.|+|||+|..|+-+|..+++.|.+|.|+++.+
T Consensus         5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            469999999999999999999999999999876

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.60  E-value=0.0098  Score=52.92  Aligned_cols=107  Identities=14%  Similarity=0.193  Sum_probs=65.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|||||.+|..-+..|.+.|.+||++.+.       +++++.+    ..++.+|+++.+.-              
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~-------~~~~l~~----l~~~~~i~~~~~~~--------------   62 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE-------LESELTL----LAEQGGITWLARCF--------------   62 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC-------CCHHHHH----HHHcCCEEEEeCCC--------------
Confidence            5789999999999999999999999999999753       3344422    22233444432210              


Q ss_pred             EEeCCCcEEecCeEEEecCCC-CCchhhhcccccccCcEEEe---cc--cccCCCCEEEEcccc
Q 018416          118 VNLRDGNRLPTDMVVVGIGIR-PNTSLFEGQLTLEKGGIKVT---GR--LQSSNSSVYAVGDVA  175 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~-p~~~l~~~~l~~~~g~I~vd---~~--l~ts~~~VyAiGD~~  175 (356)
                         ..+..-.+++|+.|+|.. .|..+....   ...++.||   +.  ..-..|.++--||..
T Consensus        63 ---~~~dl~~~~lVi~at~d~~ln~~i~~~a---~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~  120 (205)
T TIGR01470        63 ---DADILEGAFLVIAATDDEELNRRVAHAA---RARGVPVNVVDDPELCSFIFPSIVDRSPVV  120 (205)
T ss_pred             ---CHHHhCCcEEEEECCCCHHHHHHHHHHH---HHcCCEEEECCCcccCeEEEeeEEEcCCEE
Confidence               011122489999999976 555444321   23455554   21  111356666666643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.59  E-value=0.039  Score=56.71  Aligned_cols=32  Identities=25%  Similarity=0.237  Sum_probs=29.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      -.|+|||+|..|+-+|..+++.|.+|.|+|+.
T Consensus         7 ~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~   38 (557)
T PRK12844          7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ   38 (557)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            36999999999999999999999999999976

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=96.58  E-value=0.0028  Score=62.81  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=33.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccC
Q 018416           40 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCM   75 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l   75 (356)
                      ++|+|||||..|+-+|..|++.|  .+|+|+|.++++.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G   38 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG   38 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence            47999999999999999999988  8999999988764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.54  E-value=0.0085  Score=55.44  Aligned_cols=93  Identities=13%  Similarity=0.129  Sum_probs=54.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCccCCc---c---CCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMAR---L---FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  110 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~l~~---~---~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~  110 (356)
                      ...+|+|+|.|-+|.++|..|++.| .++|+++...--.+.   .   +..++.+.-.+.++++-.++.++.+|+.+.. 
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~-  107 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD-  107 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec-
Confidence            5789999999999999999999999 589999876322111   1   1222322222223332233445555655531 


Q ss_pred             CCCcEEEEEeCCC-cEE--ecCeEEEecCC
Q 018416          111 SNGKVVAVNLRDG-NRL--PTDMVVVGIGI  137 (356)
Q Consensus       111 ~~g~v~~v~~~~g-~~i--~~D~vi~a~G~  137 (356)
                            .+..++- +.+  .+|+||.|++.
T Consensus       108 ------~i~~e~~~~ll~~~~D~VIdaiD~  131 (268)
T PRK15116        108 ------FITPDNVAEYMSAGFSYVIDAIDS  131 (268)
T ss_pred             ------ccChhhHHHHhcCCCCEEEEcCCC
Confidence                  1110110 112  48999999985

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.54  E-value=0.0047  Score=61.33  Aligned_cols=92  Identities=18%  Similarity=0.248  Sum_probs=59.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+|+|+|||+|.+|+|++..+++...+|++..+ ...+.. ..+.        ....++..+..  +..+.  +++   .
T Consensus       185 ~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-~~~~--------~~~~~~~~~~~--i~~~~--e~~---~  247 (448)
T KOG1399|consen  185 RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-EPPE--------ILGENLWQVPS--IKSFT--EDG---S  247 (448)
T ss_pred             cCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc-cccc--------eeecceEEccc--ccccc--Ccc---e
Confidence            689999999999999999999999999988865 200000 0000        00112333322  55554  233   2


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhhhc
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG  146 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~~  146 (356)
                      +.+.++....+|.+|+|+|..=...+++.
T Consensus       248 ~~~~~~~~~~~D~ii~ctgy~y~fPfl~~  276 (448)
T KOG1399|consen  248 VFEKGGPVERVDRIIFCTGYKYKFPFLET  276 (448)
T ss_pred             EEEcCceeEEeeeEEEeeeeEeecceecc
Confidence            44567788899999999998755555543

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=96.54  E-value=0.038  Score=57.05  Aligned_cols=32  Identities=16%  Similarity=0.340  Sum_probs=28.7

Q ss_pred             cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~   72 (356)
                      .|+|||+|..|+-+|..+++.  |.+|+|+++.+
T Consensus         6 DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~   39 (582)
T PRK09231          6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY   39 (582)
T ss_pred             eEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence            699999999999999999987  47999999863

>PRK07512 L-aspartate oxidase; Provisional

Probab=96.52  E-value=0.02  Score=58.20  Aligned_cols=32  Identities=31%  Similarity=0.584  Sum_probs=27.6

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ...|+|||+|..|+-+|..++  +.+|+|+++.+
T Consensus         9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~   40 (513)
T PRK07512          9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAP   40 (513)
T ss_pred             cCCEEEECchHHHHHHHHHhC--cCCEEEEECCC
Confidence            357999999999999998886  57999998874

>PLN02815 L-aspartate oxidase

Probab=96.50  E-value=0.024  Score=58.61  Aligned_cols=32  Identities=22%  Similarity=0.349  Sum_probs=29.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      -.|+|||+|..|+-+|..+++.| +|.|+++.+
T Consensus        30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~   61 (594)
T PLN02815         30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKDE   61 (594)
T ss_pred             cCEEEECccHHHHHHHHHHhhCC-CEEEEECCC
Confidence            37999999999999999999999 899998863

>PRK07233 hypothetical protein; Provisional

Probab=96.48  E-value=0.0039  Score=61.34  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=33.4

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      +|+|||+|..|+.+|..|++.|++|+|+|+.+++..
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG   36 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG   36 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence            689999999999999999999999999999987644

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.0037  Score=61.98  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=34.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      +||+|+|+|..|+-+|..|++.|++|||+|+++.+..
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            5899999999999999999999999999999988754

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=96.45  E-value=0.046  Score=56.42  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=28.7

Q ss_pred             cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~   72 (356)
                      .|+|||+|..|+-+|..+++.  |.+|+|+++.+
T Consensus         5 DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~   38 (580)
T TIGR01176         5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKVY   38 (580)
T ss_pred             eEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence            699999999999999999987  57999999863

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=96.43  E-value=0.0013  Score=61.21  Aligned_cols=104  Identities=23%  Similarity=0.340  Sum_probs=65.6

Q ss_pred             CCcEEEECCchHHHHHHHHHHHC-CC-cEEEEeeCCc-cCCcc---CCHHHHHHHH-----HHHHhCCCEEEeCCeeeEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVIN-KI-NVTMVFPEAH-CMARL---FTPKIASYYE-----EYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~-G~-~Vtlv~~~~~-~l~~~---~d~~~~~~~~-----~~l~~~GV~v~~~~~v~~i  107 (356)
                      .-+++|||||--|+.+|..+.++ |. +|-++|+.+. ...+.   ....+...-.     ..|--.|.+-+. ..|+++
T Consensus        39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv~~f  117 (446)
T KOG3851|consen   39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKVKEF  117 (446)
T ss_pred             ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHHHhc
Confidence            45799999999999999998875 43 6888988753 11111   1111111110     111112222222 456777


Q ss_pred             EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc
Q 018416          108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ  147 (356)
Q Consensus       108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~  147 (356)
                      +++ ++   .|.+.+|++|.+|.+|+|.|..-+-+-++..
T Consensus       118 ~P~-~N---~v~t~gg~eIsYdylviA~Giql~y~~IkGl  153 (446)
T KOG3851|consen  118 NPD-KN---TVVTRGGEEISYDYLVIAMGIQLDYGKIKGL  153 (446)
T ss_pred             CCC-cC---eEEccCCcEEeeeeEeeeeeceeccchhcCh
Confidence            663 22   5778899999999999999998777655543

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=96.43  E-value=0.013  Score=57.95  Aligned_cols=87  Identities=13%  Similarity=0.212  Sum_probs=55.8

Q ss_pred             HHHHHHHC--CCcEEEEeeCCcc------CCcc----CC-H-HHHHH-HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEE
Q 018416           54 CAASLVIN--KINVTMVFPEAHC------MARL----FT-P-KIASY-YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  118 (356)
Q Consensus        54 ~A~~L~~~--G~~Vtlv~~~~~~------l~~~----~d-~-~~~~~-~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v  118 (356)
                      +|..|+++  ..+|||+++.+.+      ++..    .. + +.... ..+.+++.||+++.++.|++++. ++..+ .+
T Consensus         2 aA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~-~~~~v-~~   79 (427)
T TIGR03385         2 AASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVND-ERQTV-VV   79 (427)
T ss_pred             HHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEEC-CCCEE-EE
Confidence            46677766  4679999998854      1111    11 1 11111 23344888999999999999975 33332 23


Q ss_pred             EeC-CCcEEe--cCeEEEecCCCCCch
Q 018416          119 NLR-DGNRLP--TDMVVVGIGIRPNTS  142 (356)
Q Consensus       119 ~~~-~g~~i~--~D~vi~a~G~~p~~~  142 (356)
                      ... +++++.  +|.+|+|+|.+|+..
T Consensus        80 ~~~~~~~~~~~~yd~lIiATG~~p~~~  106 (427)
T TIGR03385        80 RNNKTNETYEESYDYLILSPGASPIVP  106 (427)
T ss_pred             EECCCCCEEecCCCEEEECCCCCCCCC
Confidence            322 345777  999999999998754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PLN02268 probable polyamine oxidase

Probab=96.40  E-value=0.0044  Score=61.36  Aligned_cols=38  Identities=29%  Similarity=0.429  Sum_probs=34.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      .+|+|||+|.+|+-+|..|.+.|++|+|+|.++++..+
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr   38 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR   38 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence            37999999999999999999999999999999887544

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.40  E-value=0.04  Score=56.66  Aligned_cols=57  Identities=16%  Similarity=0.170  Sum_probs=39.0

Q ss_pred             HHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CCc--EEec-CeEEEecC-CCCCchhhh
Q 018416           88 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPT-DMVVVGIG-IRPNTSLFE  145 (356)
Q Consensus        88 ~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~-D~vi~a~G-~~p~~~l~~  145 (356)
                      .+.+++.||++++++.++++.. ++|++..|... +|+  .+.+ ..||+|+| +.-|.++.+
T Consensus       224 ~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~  285 (564)
T PRK12845        224 FAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRW  285 (564)
T ss_pred             HHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHH
Confidence            3345678999999999999875 46777776443 343  3555 58999998 444544543

>PRK12839 hypothetical protein; Provisional

Probab=96.39  E-value=0.051  Score=56.01  Aligned_cols=59  Identities=25%  Similarity=0.331  Sum_probs=40.3

Q ss_pred             HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe--CCCc-EE-ecCeEEEecC-CCCCchhhh
Q 018416           87 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--RDGN-RL-PTDMVVVGIG-IRPNTSLFE  145 (356)
Q Consensus        87 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~--~~g~-~i-~~D~vi~a~G-~~p~~~l~~  145 (356)
                      +.+..++.||+++.++.++++..+++|++..|..  .+++ .+ .++.||+|+| +.-|.++..
T Consensus       220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~  283 (572)
T PRK12839        220 LLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRK  283 (572)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHH
Confidence            3444566899999999999987645677777754  3443 23 4589999997 444455443

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.37  E-value=0.023  Score=55.23  Aligned_cols=96  Identities=26%  Similarity=0.435  Sum_probs=66.9

Q ss_pred             EEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCc--cCCHHH---------HHHHHHHHHhCCCEEEeCCeeeEEE
Q 018416           42 AVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR--LFTPKI---------ASYYEEYYKSKGVKFVKGTVLSSFD  108 (356)
Q Consensus        42 vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~--~~d~~~---------~~~~~~~l~~~GV~v~~~~~v~~i~  108 (356)
                      ++|||+|..|+.+|..+.+.  +.+++++...+.....  .++..+         ........++.+++++++++++++.
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id   80 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID   80 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence            58999999999999998885  5578877776543210  011111         1111111247799999999999997


Q ss_pred             EcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          109 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       109 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      . +.   ..+.+.+| ++.+|.+++++|.+|...
T Consensus        81 ~-~~---~~v~~~~g-~~~yd~LvlatGa~~~~~  109 (415)
T COG0446          81 P-EN---KVVLLDDG-EIEYDYLVLATGARPRPP  109 (415)
T ss_pred             C-CC---CEEEECCC-cccccEEEEcCCCcccCC
Confidence            5 22   34667777 899999999999998875

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=96.35  E-value=0.0059  Score=55.54  Aligned_cols=93  Identities=18%  Similarity=0.343  Sum_probs=60.4

Q ss_pred             cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCE----------EE--eCCeeeE
Q 018416           41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK----------FV--KGTVLSS  106 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~----------v~--~~~~v~~  106 (356)
                      +.+|||||..|+.||+.|+..  ..+|.++..++-+-.    -.--..+.++|++..|+          +.  .+ .|..
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vks----vtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~-~v~~   75 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS----VTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLN-DVVT   75 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH----HhhHHHHHHHHHhcCccccchhhhcccHHHHHH-hhhh
Confidence            368999999999999999975  557888877654322    11223333444444432          11  01 1222


Q ss_pred             EEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          107 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       107 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +..    .-..+++.+|.++.++.+++++|.+|...
T Consensus        76 ~~s----~ehci~t~~g~~~ky~kKOG~tg~kPklq  107 (334)
T KOG2755|consen   76 WDS----SEHCIHTQNGEKLKYFKLCLCTGYKPKLQ  107 (334)
T ss_pred             hcc----ccceEEecCCceeeEEEEEEecCCCccee
Confidence            221    11467889999999999999999999653

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.28  E-value=0.041  Score=55.52  Aligned_cols=33  Identities=27%  Similarity=0.342  Sum_probs=31.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .-.++|||||..|+-+|..++.+|.+|.|+|++
T Consensus        12 ~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~   44 (532)
T COG0578          12 EFDVIVIGGGITGAGIARDAAGRGLKVALVEKG   44 (532)
T ss_pred             CCCEEEECCchhhHHHHHHHHhCCCeEEEEecC
Confidence            457999999999999999999999999999997

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=96.27  E-value=0.029  Score=54.32  Aligned_cols=102  Identities=20%  Similarity=0.285  Sum_probs=75.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHC------CCcEEEEeeCCccCCcc-----------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVIN------KINVTMVFPEAHCMARL-----------------------------------   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~------G~~Vtlv~~~~~~l~~~-----------------------------------   78 (356)
                      -.|+|||+|+.|+..|-.|.++      ..+|.++|....+....                                   
T Consensus        77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~~  156 (621)
T KOG2415|consen   77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKFK  156 (621)
T ss_pred             ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccccccccee
Confidence            4799999999999999988764      45788888874321100                                   


Q ss_pred             ---------------CC---------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC------C-----
Q 018416           79 ---------------FT---------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD------G-----  123 (356)
Q Consensus        79 ---------------~d---------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~------g-----  123 (356)
                                     ++         ..+...+-+..++.||+++.+....++.-++||.|..+-++|      |     
T Consensus       157 fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~  236 (621)
T KOG2415|consen  157 FLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDT  236 (621)
T ss_pred             eeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCcccc
Confidence                           00         124556667778899999999999999888899888887654      2     


Q ss_pred             ----cEEecCeEEEecCCCCCc
Q 018416          124 ----NRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       124 ----~~i~~D~vi~a~G~~p~~  141 (356)
                          -++.+..-|+|-|-+...
T Consensus       237 FerGme~hak~TifAEGc~G~L  258 (621)
T KOG2415|consen  237 FERGMEFHAKVTIFAEGCHGSL  258 (621)
T ss_pred             ccccceecceeEEEeccccchh
Confidence                257788888888876543

>PRK07208 hypothetical protein; Provisional

Probab=96.26  E-value=0.006  Score=61.22  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=35.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      +.++|+|||||++|+-+|..|.++|.+|+++|+++++..
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG   41 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG   41 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            457899999999999999999999999999999877643

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=96.25  E-value=0.075  Score=55.15  Aligned_cols=32  Identities=22%  Similarity=0.394  Sum_probs=28.6

Q ss_pred             cEEEECCchHHHHHHHHHH----HCCCcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLV----INKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~----~~G~~Vtlv~~~~   72 (356)
                      .|+|||+|..|+-+|..++    +.|.+|+|+++.+
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~   36 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN   36 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence            3899999999999999998    6799999998853

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK09077 L-aspartate oxidase; Provisional

Probab=96.24  E-value=0.072  Score=54.47  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=28.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      -.|+|||+|..|+-+|..+++. .+|+|+++.+
T Consensus         9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~   40 (536)
T PRK09077          9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGP   40 (536)
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCEEEEeccC
Confidence            3699999999999999999886 8999998863

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=96.20  E-value=0.013  Score=54.04  Aligned_cols=34  Identities=26%  Similarity=0.478  Sum_probs=31.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCC------CcEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINK------INVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G------~~Vtlv~~~   71 (356)
                      +.++++|||||.||+.+|.+|++.+      ..||++|..
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~   48 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK   48 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence            4589999999999999999999987      789999886

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.18  E-value=0.0065  Score=61.33  Aligned_cols=37  Identities=30%  Similarity=0.321  Sum_probs=33.9

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      ..++||||+|.-|+-+|..|++.|.+|+|+|+.+.+.
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G   39 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG   39 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence            4689999999999999999999999999999887653

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.11  E-value=0.023  Score=56.80  Aligned_cols=85  Identities=21%  Similarity=0.175  Sum_probs=59.4

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL  120 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~  120 (356)
                      ++.|||.|.+|+.+|..|.++|.+|++.++.+..  .      .....+.|++.|++++.+.... .+        .+. 
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~--~------~~~~~~~l~~~gi~~~~g~~~~-~~--------~~~-   63 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP--E------LLERQQELEQEGITVKLGKPLE-LE--------SFQ-   63 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch--h------hHHHHHHHHHcCCEEEECCccc-hh--------hhh-
Confidence            5899999999999999999999999999987542  1      1122345677899998765321 00        000 


Q ss_pred             CCCcEEecCeEEEecCCCCCchhhh
Q 018416          121 RDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       121 ~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                       . ..-.+|.|+.++|..|+..++.
T Consensus        64 -~-~~~~~d~vv~s~gi~~~~~~~~   86 (459)
T PRK02705         64 -P-WLDQPDLVVVSPGIPWDHPTLV   86 (459)
T ss_pred             -H-HhhcCCEEEECCCCCCCCHHHH
Confidence             0 0124799999999988776554

>PTZ00367 squalene epoxidase; Provisional

Probab=96.10  E-value=0.01  Score=60.87  Aligned_cols=33  Identities=21%  Similarity=0.278  Sum_probs=31.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      -+|+|||||+.|+-+|..|++.|.+|+++|+.+
T Consensus        34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            479999999999999999999999999999975

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.07  E-value=0.031  Score=55.93  Aligned_cols=92  Identities=18%  Similarity=0.146  Sum_probs=63.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeee
Q 018416           26 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLS  105 (356)
Q Consensus        26 da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~  105 (356)
                      |..+++..+   .++++.|+|.|.+|+-+|..|.++|++|++.++.+...   .+ ..    .+.|++.|+.+..+....
T Consensus         4 ~~~~~~~~~---~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---~~-~~----~~~l~~~gi~~~~~~~~~   72 (458)
T PRK01710          4 DFNEFKKFI---KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE---LG-EV----SNELKELGVKLVLGENYL   72 (458)
T ss_pred             hHHHHhhhh---cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc---ch-HH----HHHHHhCCCEEEeCCCCh
Confidence            344555555   46899999999999999999999999999998765321   11 11    234677898887542210


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416          106 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       106 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                                ..       .-.+|+||.++|..|....+.
T Consensus        73 ----------~~-------~~~~dlVV~Spgi~~~~p~~~   95 (458)
T PRK01710         73 ----------DK-------LDGFDVIFKTPSMRIDSPELV   95 (458)
T ss_pred             ----------HH-------hccCCEEEECCCCCCCchHHH
Confidence                      00       123799999999998766543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=96.07  E-value=0.0078  Score=60.71  Aligned_cols=36  Identities=33%  Similarity=0.372  Sum_probs=33.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      ++|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G   37 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG   37 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            579999999999999999999999999999997763

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PLN03000 amine oxidase

Probab=96.06  E-value=0.015  Score=62.04  Aligned_cols=56  Identities=20%  Similarity=0.266  Sum_probs=44.2

Q ss_pred             CCHHHHHHHHHHHhc-CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416           22 RDLADANRLVNVMKS-CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus        22 ~~~~da~~i~~~l~~-~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      .+...+..+.+.+.. ...++|+|||+|+.|+.+|..|.+.|++|+++|.++++..+
T Consensus       166 in~g~~~~~~~~~~~~~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGR  222 (881)
T PLN03000        166 INFGIAQAIKDKFPAQSSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR  222 (881)
T ss_pred             ccHHHHHHHHhhccccCCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCC
Confidence            456666666655432 23578999999999999999999999999999998776443

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=96.00  E-value=0.0086  Score=59.70  Aligned_cols=36  Identities=28%  Similarity=0.385  Sum_probs=33.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHC----CCcEEEEeeCCccC
Q 018416           40 GNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCM   75 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~----G~~Vtlv~~~~~~l   75 (356)
                      ++|+|||||..|+-+|..|.+.    |.+|+|+|+++++.
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G   42 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG   42 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence            5899999999999999999999    99999999988763

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02576 protoporphyrinogen oxidase

Probab=95.96  E-value=0.011  Score=59.69  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=35.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHC-CCcEEEEeeCCccCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMA   76 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~-G~~Vtlv~~~~~~l~   76 (356)
                      ...+|+|||||..|+-+|..|.+. |.+|+|+|.++++..
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG   50 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG   50 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence            346899999999999999999999 999999999987754

>TIGR02734 crtI_fam phytoene desaturase

Probab=95.92  E-value=0.0082  Score=60.69  Aligned_cols=34  Identities=38%  Similarity=0.420  Sum_probs=31.9

Q ss_pred             EEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           42 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        42 vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      |+|||+|..|+-+|..|++.|.+|+|+|+.+++.
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G   34 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG   34 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence            6899999999999999999999999999998764

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=95.85  E-value=0.011  Score=58.92  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=32.8

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      +|+|||+|+.|+-+|..|.+.|.+|+|+|+++++..
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG   36 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG   36 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            589999999999999999999999999999886543

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=95.82  E-value=0.012  Score=57.11  Aligned_cols=34  Identities=29%  Similarity=0.449  Sum_probs=31.8

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..+|+|||||.+|+-+|..|+++|.+|+++++..
T Consensus         4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~   37 (387)
T COG0665           4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE   37 (387)
T ss_pred             cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence            4689999999999999999999999999999874

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=95.81  E-value=0.092  Score=51.87  Aligned_cols=91  Identities=23%  Similarity=0.350  Sum_probs=55.8

Q ss_pred             HHHHHHhC-CCEEEeCCeeeEEEEcCCCc-EEEEE-eCC--CcEEecCeEEEecCCCCCchhhhccccc--ccCcEEEe-
Q 018416           87 YEEYYKSK-GVKFVKGTVLSSFDVDSNGK-VVAVN-LRD--GNRLPTDMVVVGIGIRPNTSLFEGQLTL--EKGGIKVT-  158 (356)
Q Consensus        87 ~~~~l~~~-GV~v~~~~~v~~i~~~~~g~-v~~v~-~~~--g~~i~~D~vi~a~G~~p~~~l~~~~l~~--~~g~I~vd-  158 (356)
                      +.+.+++. |++++++++|+.++..+||. ...+. +.+  .+++.++.|+++.|-..-.-+-+.++..  .=|+..|- 
T Consensus       187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyggfPVsG  266 (488)
T PF06039_consen  187 LVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGGFPVSG  266 (488)
T ss_pred             HHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccCCCcccc
Confidence            44556555 99999999999999877873 22222 222  3579999999999976433333334432  22344443 


Q ss_pred             cccccCCC--------CEEEEcccccc
Q 018416          159 GRLQSSNS--------SVYAVGDVAAF  177 (356)
Q Consensus       159 ~~l~ts~~--------~VyAiGD~~~~  177 (356)
                      .+++++.|        -||-.-.+-..
T Consensus       267 ~fl~~~n~~vv~~H~aKVYgka~vGaP  293 (488)
T PF06039_consen  267 QFLRCKNPEVVAQHNAKVYGKASVGAP  293 (488)
T ss_pred             eEEecCCHHHHHHhcceeeeeCCCCCC
Confidence            45666544        46766555333

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=95.80  E-value=0.014  Score=54.66  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=35.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL   78 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~   78 (356)
                      +.+|||+|+.|.-+|..++++|++|-+|++++++....
T Consensus         3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa   40 (374)
T COG0562           3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA   40 (374)
T ss_pred             cEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence            57999999999999999999999999999999987654

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=95.76  E-value=0.012  Score=58.81  Aligned_cols=37  Identities=30%  Similarity=0.334  Sum_probs=32.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHC------CCcEEEEeeCCccCC
Q 018416           40 GNAVVIGGGYIGMECAASLVIN------KINVTMVFPEAHCMA   76 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~------G~~Vtlv~~~~~~l~   76 (356)
                      ++|+|||||.+|+-+|..|.+.      |.+|+|+|.++++..
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG   44 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG   44 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence            5799999999999999999986      379999999987743

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.74  E-value=0.031  Score=55.65  Aligned_cols=83  Identities=20%  Similarity=0.208  Sum_probs=58.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|+|+|-+|+.+|..|++.|.+|++.++.+..     ...    ..+.|++.|+++..+.....+          
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~-----~~~----~~~~l~~~g~~~~~~~~~~~~----------   64 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFS-----ENP----EAQELLEEGIKVICGSHPLEL----------   64 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCcc-----chh----HHHHHHhcCCEEEeCCCCHHH----------
Confidence            4689999999999999999999999999999765421     111    123466778887654321111          


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                        +.+    .+|.||.+.|..+...++.
T Consensus        65 --~~~----~~d~vV~s~gi~~~~~~~~   86 (447)
T PRK02472         65 --LDE----DFDLMVKNPGIPYTNPMVE   86 (447)
T ss_pred             --hcC----cCCEEEECCCCCCCCHHHH
Confidence              000    4799999999888776554

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.72  E-value=0.083  Score=50.07  Aligned_cols=33  Identities=24%  Similarity=0.264  Sum_probs=30.8

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ..++.|||+|.+|.-+|..|++.|++|+++.|.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~   37 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS   37 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence            358999999999999999999999999999885

>PLN02529 lysine-specific histone demethylase 1

Probab=95.71  E-value=0.015  Score=61.23  Aligned_cols=37  Identities=19%  Similarity=0.388  Sum_probs=33.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      ..++|+|||+|+.|+.+|..|+++|++|+++|.++++
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~  195 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP  195 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence            3578999999999999999999999999999997653

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.70  E-value=0.012  Score=51.25  Aligned_cols=36  Identities=25%  Similarity=0.310  Sum_probs=30.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      +|.|||+|..|..+|..++..|.+|+++++.+.-+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~   36 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALE   36 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            589999999999999999999999999998776444

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.61  E-value=0.012  Score=46.22  Aligned_cols=35  Identities=31%  Similarity=0.488  Sum_probs=31.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++++++|||||.+|..-+..|.+.|.+||++.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            68999999999999999999999999999997753

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.58  E-value=0.17  Score=54.99  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=30.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus        14 ~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~   46 (897)
T PRK13800         14 CDVLVIGGGTAGTMAALTAAEHGANVLLLEKAH   46 (897)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            369999999999999999999999999998764

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.58  E-value=0.021  Score=48.64  Aligned_cols=32  Identities=34%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEe
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVF   69 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~   69 (356)
                      .+++++|||||.+|..-+..|.+.|.+|+++.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            68999999999999999999999999999994

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.49  E-value=0.048  Score=54.29  Aligned_cols=80  Identities=20%  Similarity=0.187  Sum_probs=56.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHh--CCCEEEeCCeeeEEEEcCCCcE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKV  115 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~--~GV~v~~~~~v~~i~~~~~g~v  115 (356)
                      .+++++|+|.|-+|+.+|..|+++|.+|++.+..+..      +.     .+.|++  .||+++.+.....         
T Consensus         4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~------~~-----~~~l~~~~~gi~~~~g~~~~~---------   63 (445)
T PRK04308          4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP------ER-----VAQIGKMFDGLVFYTGRLKDA---------   63 (445)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc------hh-----HHHHhhccCCcEEEeCCCCHH---------
Confidence            4689999999999999999999999999999876531      11     122444  4777665431100         


Q ss_pred             EEEEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416          116 VAVNLRDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       116 ~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                              ..-.+|+||+++|..|....+.
T Consensus        64 --------~~~~~d~vv~spgi~~~~p~~~   85 (445)
T PRK04308         64 --------LDNGFDILALSPGISERQPDIE   85 (445)
T ss_pred             --------HHhCCCEEEECCCCCCCCHHHH
Confidence                    0124799999999999877554

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.45  E-value=0.041  Score=52.95  Aligned_cols=102  Identities=20%  Similarity=0.266  Sum_probs=57.9

Q ss_pred             cEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCcc-------CCc-------------cCC-------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC-------MAR-------------LFT-------------------   80 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~-------l~~-------------~~d-------------------   80 (356)
                      .++.||.|+.++-+|..|...+ .++.++++.+.+       ++.             .-+                   
T Consensus         4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~   83 (341)
T PF13434_consen    4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE   83 (341)
T ss_dssp             SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred             eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence            5899999999999999999887 889999987643       000             000                   


Q ss_pred             -----------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC--cEEEEEeC----CCcEEecCeEEEecCCCCCch
Q 018416           81 -----------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG--KVVAVNLR----DGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        81 -----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g--~v~~v~~~----~g~~i~~D~vi~a~G~~p~~~  142 (356)
                                 .+..++++-..++.+-.+..+.+|++|+..+++  ....|.+.    +++.+.|+.|++++|.+|...
T Consensus        84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP  162 (341)
T PF13434_consen   84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP  162 (341)
T ss_dssp             HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred             hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence                       112222222223344447889999999874443  23455552    346799999999999888764

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.45  E-value=0.072  Score=50.99  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=29.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .++.|||.|.+|.-+|..|++.|++|+++.|.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            47999999999999999999999999999863

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=95.43  E-value=0.02  Score=55.72  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=33.0

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      +++|||+|..|+-+|..|++.|.+|+++++++++..
T Consensus         3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG   38 (377)
T TIGR00031         3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG   38 (377)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            689999999999999999999999999999877654

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.41  E-value=0.042  Score=52.02  Aligned_cols=80  Identities=24%  Similarity=0.308  Sum_probs=54.7

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL  120 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~  120 (356)
                      ++.|+|+|.+|.=+|..|++.|.+|+++.|.++              .+.+++.|..+.....  ...      ......
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~--------------~~~l~~~GL~i~~~~~--~~~------~~~~~~   59 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR--------------LEALKKKGLRIEDEGG--NFT------TPVVAA   59 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH--------------HHHHHhCCeEEecCCC--ccc------cccccc
Confidence            789999999999999999999988999988754              2456777888876544  100      001111


Q ss_pred             CC-CcEEecCeEEEecCCCCCch
Q 018416          121 RD-GNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       121 ~~-g~~i~~D~vi~a~G~~p~~~  142 (356)
                      .+ ...-++|+||+++=.--..+
T Consensus        60 ~~~~~~~~~Dlviv~vKa~q~~~   82 (307)
T COG1893          60 TDAEALGPADLVIVTVKAYQLEE   82 (307)
T ss_pred             cChhhcCCCCEEEEEeccccHHH
Confidence            11 22347999999876544333

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=95.40  E-value=0.02  Score=56.81  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=32.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCcc
Q 018416           40 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC   74 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~   74 (356)
                      ++++|||||.+|+-.|..|++++  ++||++|+++++
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~   37 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV   37 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence            47999999999999999999999  999999998765

>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A

Probab=95.37  E-value=0.068  Score=43.04  Aligned_cols=32  Identities=13%  Similarity=0.183  Sum_probs=22.2

Q ss_pred             HHHHHcCCCCCCCCCCCCeEEEEec-CceEEEeec
Q 018416          201 AVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGD  234 (356)
Q Consensus       201 aa~~i~g~~~~~~~~~~p~~~~~~~-~~~~~~~G~  234 (356)
                      |++||.|..  .+|.+.|+||++++ ++.+..+|.
T Consensus         1 AG~NM~ga~--~py~hq~~fwSdlgp~vgyeAvG~   33 (133)
T PF14721_consen    1 AGENMTGAN--KPYWHQSMFWSDLGPDVGYEAVGI   33 (133)
T ss_dssp             HHHHHTTT-----S-S--EEEEESSTTEEEEEEES
T ss_pred             CCccccCCC--CcccccchhHhhcCCCcCeEEeee
Confidence            578999876  68999999999996 788888885

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=95.36  E-value=0.1  Score=51.71  Aligned_cols=31  Identities=29%  Similarity=0.505  Sum_probs=28.8

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .|+|||+|..|+-+|..|.+. .+|+++.+.+
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~   39 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGP   39 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCC
Confidence            799999999999999999988 9999999874

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=95.35  E-value=0.16  Score=49.40  Aligned_cols=84  Identities=14%  Similarity=0.150  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHCCCcEEEEeeCCccCCcc-CCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEec
Q 018416           51 GMECAASLVINKINVTMVFPEAHCMARL-FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPT  128 (356)
Q Consensus        51 GlE~A~~L~~~G~~Vtlv~~~~~~l~~~-~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~  128 (356)
                      --++-..+.+.|.. +..++..+++|.. -..++.+.+...+++.||+++++++|++|+  +++  ..+.+.++ ..+.+
T Consensus        56 ~~d~~~fF~~~Gi~-~~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~--~~v~~~~~~~~~~a  130 (376)
T TIGR03862        56 AVALQDWARGLGIE-TFVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT--LRFETPDGQSTIEA  130 (376)
T ss_pred             HHHHHHHHHHCCCc-eEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc--EEEEECCCceEEec
Confidence            44566777777875 3356667887742 346788999999999999999999999993  233  34555433 56999


Q ss_pred             CeEEEecCCCC
Q 018416          129 DMVVVGIGIRP  139 (356)
Q Consensus       129 D~vi~a~G~~p  139 (356)
                      |.||+|+|..+
T Consensus       131 ~~vIlAtGG~s  141 (376)
T TIGR03862       131 DAVVLALGGAS  141 (376)
T ss_pred             CEEEEcCCCcc
Confidence            99999999754

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.31  E-value=0.076  Score=50.20  Aligned_cols=33  Identities=18%  Similarity=0.310  Sum_probs=30.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+++|+|+|.+|.-+|..|++.|.+|+++.|++
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            479999999999999999999999999999863

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.29  E-value=0.076  Score=49.85  Aligned_cols=30  Identities=23%  Similarity=0.376  Sum_probs=28.7

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEee
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFP   70 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~   70 (356)
                      ++.|+|+|.+|.-+|..|++.|.+|+++.|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            689999999999999999999999999987

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=95.29  E-value=0.024  Score=57.05  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=32.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      +++|||+|..|+-+|..|++.|++|+++|+.+.+.
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G   35 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG   35 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence            58999999999999999999999999999988764

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=95.25  E-value=0.022  Score=59.06  Aligned_cols=40  Identities=15%  Similarity=0.150  Sum_probs=30.1

Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      ++++|++|++||+|||+.....        .+...+..+|++++.++.
T Consensus       389 ~~~~T~v~glyA~Ge~~~~~~~--------~l~~~s~~~g~~ag~~~~  428 (608)
T PRK06854        389 YNRMTTVEGLFAAGDVVGGSPH--------KFSSGSFAEGRIAAKAAV  428 (608)
T ss_pred             cccccCCCCEEEeeecCCCCcc--------hhHHHHHHHHHHHHHHHH
Confidence            9999999999999999753211        245566778888887765

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=95.23  E-value=0.028  Score=55.07  Aligned_cols=61  Identities=20%  Similarity=0.313  Sum_probs=46.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccC----------------CHHHHHHHHHHHHhCCCEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF----------------TPKIASYYEEYYKSKGVKFV   99 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~----------------d~~~~~~~~~~l~~~GV~v~   99 (356)
                      +..+|+|||+|+.||-.|..|.+.|++|+++|.++++..+..                .| -...+....++.||...
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p-~~~~~l~~~k~~gv~~~   82 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP-THDALLAYAKEFGVPLE   82 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc-cchhhhhhHHhcCCCCC
Confidence            457899999999999999999999999999999988754421                11 23444566677777643

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.16  E-value=0.053  Score=54.30  Aligned_cols=77  Identities=18%  Similarity=0.114  Sum_probs=56.7

Q ss_pred             CCCcEEEECCchHHHH-HHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEE
Q 018416           38 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  116 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE-~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~  116 (356)
                      +.+++.|+|-|-+|+. +|..|.++|.+|++.+..+.       +.     .+.|++.|+++..+.....          
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~-------~~-----~~~l~~~gi~~~~~~~~~~----------   63 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES-------AV-----TQRLLELGAIIFIGHDAEN----------   63 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC-------hH-----HHHHHHCCCEEeCCCCHHH----------
Confidence            5679999999999999 79999999999999987542       11     1236777888875322100          


Q ss_pred             EEEeCCCcEEecCeEEEecCCCCCchhh
Q 018416          117 AVNLRDGNRLPTDMVVVGIGIRPNTSLF  144 (356)
Q Consensus       117 ~v~~~~g~~i~~D~vi~a~G~~p~~~l~  144 (356)
                         +     -.+|+||+++|..|+...+
T Consensus        64 ---~-----~~~d~vv~spgi~~~~~~~   83 (461)
T PRK00421         64 ---I-----KDADVVVYSSAIPDDNPEL   83 (461)
T ss_pred             ---C-----CCCCEEEECCCCCCCCHHH
Confidence               1     1379999999998876644

>PLN02487 zeta-carotene desaturase

Probab=95.14  E-value=0.029  Score=57.63  Aligned_cols=36  Identities=22%  Similarity=0.256  Sum_probs=33.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      ++|+|||+|..|+-+|..|++.|++|+++|+.+++.
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g  111 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG  111 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence            499999999999999999999999999999988764

>PLN02612 phytoene desaturase

Probab=95.13  E-value=0.089  Score=54.19  Aligned_cols=55  Identities=15%  Similarity=0.257  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecC
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  136 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G  136 (356)
                      .+.+.+.+.|++.|.++++++.|++|+.++++.+..+.+.+|+++.+|.||++++
T Consensus       309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p  363 (567)
T PLN02612        309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP  363 (567)
T ss_pred             HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence            4556677778889999999999999987667766678888899999999999986

>TIGR02730 carot_isom carotene isomerase

Probab=95.13  E-value=0.027  Score=56.83  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=32.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      .++|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus         2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~   35 (493)
T TIGR02730         2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP   35 (493)
T ss_pred             cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            4899999999999999999999999999998765

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=95.12  E-value=0.026  Score=56.93  Aligned_cols=32  Identities=19%  Similarity=0.245  Sum_probs=29.8

Q ss_pred             cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~   72 (356)
                      .|+|||||.+|+-+|..|+++  |.+|+|+|+.+
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~   35 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLD   35 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            589999999999999999997  99999999964

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=95.07  E-value=0.033  Score=59.17  Aligned_cols=37  Identities=27%  Similarity=0.361  Sum_probs=34.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      +.++|+|||+|..|+.+|..|.+.|.+|+++|.++++
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~  273 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP  273 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence            3578999999999999999999999999999998766

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.05  E-value=0.086  Score=53.03  Aligned_cols=79  Identities=24%  Similarity=0.269  Sum_probs=56.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|+|.|-+|+-+|..|.+.|.+|++.++.+.       + .    .+.+++.||+++.+....+           
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~-------~-~----~~~l~~~gi~~~~~~~~~~-----------   70 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNET-------A-R----HKLIEVTGVADISTAEASD-----------   70 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChH-------H-H----HHHHHhcCcEEEeCCCchh-----------
Confidence            568999999999999999999999999999875421       1 1    2234556888765421100           


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                       .+     -.+|+||.+.|..|....+.
T Consensus        71 -~~-----~~~d~vV~Spgi~~~~p~~~   92 (473)
T PRK00141         71 -QL-----DSFSLVVTSPGWRPDSPLLV   92 (473)
T ss_pred             -Hh-----cCCCEEEeCCCCCCCCHHHH
Confidence             00     14799999999998876543

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.00  E-value=0.035  Score=48.53  Aligned_cols=55  Identities=24%  Similarity=0.313  Sum_probs=37.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------CccCCHHHHHHHHHHHHhC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------ARLFTPKIASYYEEYYKSK   94 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~~~d~~~~~~~~~~l~~~   94 (356)
                      .+|.|||.|++|+-+|..|++.|++|+.++..+...       .++.++.+.+.+.+.++..
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~   62 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAG   62 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTT
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccc
Confidence            379999999999999999999999999998875421       1124566666666665543

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.99  E-value=0.075  Score=49.68  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=31.3

Q ss_pred             CCCCcEEEECCch-HHHHHHHHHHHCCCcEEEEee
Q 018416           37 CSGGNAVVIGGGY-IGMECAASLVINKINVTMVFP   70 (356)
Q Consensus        37 ~~~~~vvVvGgG~-iGlE~A~~L~~~G~~Vtlv~~   70 (356)
                      ..+|+++|+|.|. +|--+|..|.+.|..||++++
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~  191 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHS  191 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence            4789999999886 999999999999999999986

>PRK08275 putative oxidoreductase; Provisional

Probab=94.99  E-value=0.025  Score=57.98  Aligned_cols=45  Identities=22%  Similarity=0.277  Sum_probs=34.2

Q ss_pred             CcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       153 g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      |+|.||+.++|++|++||+|||+....         .....|...|+.|+.++.
T Consensus       357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~---------~~~~~~~~~G~~a~~~~~  401 (554)
T PRK08275        357 SGVWVNEKAETTVPGLYAAGDMASVPH---------NYMLGAFTYGWFAGENAA  401 (554)
T ss_pred             CcEEECCCCccCCCCEEECcccCCchh---------HHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999975321         223456677777777664

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.95  E-value=0.039  Score=48.95  Aligned_cols=33  Identities=24%  Similarity=0.454  Sum_probs=31.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEee
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFP   70 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~   70 (356)
                      .+++++|||||.+|...+..|.+.|.+||++.+
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            689999999999999999999999999999964

>PLN02612 phytoene desaturase

Probab=94.94  E-value=0.039  Score=56.77  Aligned_cols=38  Identities=16%  Similarity=0.107  Sum_probs=34.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      .+++|+|||+|..|+-+|..|.+.|.+|+++|+++++.
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~g  129 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLG  129 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCC
Confidence            46789999999999999999999999999999987643

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.91  E-value=0.03  Score=52.45  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=34.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      ++|.|||+|..|..+|..++..|++|+++++.+.-+.+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~   43 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATA   43 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            58999999999999999999999999999998775543

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=94.91  E-value=0.11  Score=49.16  Aligned_cols=56  Identities=21%  Similarity=0.338  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      ..+...+.+.++++|++++.++.|++++. +++.+..|.+.+| ++.+|.||+|+|..
T Consensus       137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~  192 (337)
T TIGR02352       137 RALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAW  192 (337)
T ss_pred             HHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChh
Confidence            56777888889999999999999999986 4555666776666 79999999999954

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK04148 hypothetical protein; Provisional

Probab=94.85  E-value=0.039  Score=45.50  Aligned_cols=43  Identities=14%  Similarity=0.153  Sum_probs=35.0

Q ss_pred             HHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           30 LVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        30 i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      |.+.+...+++++++||.| .|.++|..|++.|.+|+.++..+.
T Consensus         8 l~~~~~~~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148          8 IAENYEKGKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             HHHhcccccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            4444444456789999999 999999999999999999986553

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=94.82  E-value=0.028  Score=61.04  Aligned_cols=46  Identities=24%  Similarity=0.256  Sum_probs=35.1

Q ss_pred             cCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      .|+|.||.+++|++|++||+|||+....         .....+.-.|+.|+.++.
T Consensus       361 ~GGi~vd~~~~T~v~GLfAaGE~a~~~~---------nsl~~a~v~G~~Ag~~a~  406 (897)
T PRK13800        361 ASGVWVDEHARTTVPGLYAAGDLACVPH---------NYMIGAFVFGDLAGAHAA  406 (897)
T ss_pred             cceEEecCCCcccCCCeEechhccCcch---------hhhhhHHHhHHHHHHHHH
Confidence            4789999999999999999999986432         233456667777777664

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.77  E-value=0.096  Score=51.93  Aligned_cols=83  Identities=23%  Similarity=0.241  Sum_probs=60.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++|+|+|-|-.|+.+|..|.++|.+|++.+..+.. ..   +.     ...+...+|++..+....            
T Consensus         6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~---~~-----~~~~~~~~i~~~~g~~~~------------   64 (448)
T COG0771           6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EG---LA-----AQPLLLEGIEVELGSHDD------------   64 (448)
T ss_pred             cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cc---hh-----hhhhhccCceeecCccch------------
Confidence            4789999999999999999999999999999977654 21   11     113345577776553321            


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhhhc
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG  146 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~~  146 (356)
                           -..-.+|.|+.++|..|...++..
T Consensus        65 -----~~~~~~d~vV~SPGi~~~~p~v~~   88 (448)
T COG0771          65 -----EDLAEFDLVVKSPGIPPTHPLVEA   88 (448)
T ss_pred             -----hccccCCEEEECCCCCCCCHHHHH
Confidence                 112358999999999999886553

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=94.69  E-value=0.031  Score=53.61  Aligned_cols=32  Identities=19%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      -.|+|||+|.+|..+|..|++.|.+|+++||.
T Consensus        46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             ccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            46999999999999999999999999999997

>TIGR02730 carot_isom carotene isomerase

Probab=94.63  E-value=0.14  Score=51.60  Aligned_cols=57  Identities=21%  Similarity=0.253  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      ..+.+.+.+.++++|+++++++.|++|.. +++++..+++.+|+++++|.||++.|..
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence            46778888899999999999999999986 4567778888899999999999998854

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.61  E-value=0.11  Score=52.49  Aligned_cols=104  Identities=16%  Similarity=0.210  Sum_probs=63.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEE-eCCeeeEEEEcCCCcEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV-KGTVLSSFDVDSNGKVV  116 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~-~~~~v~~i~~~~~g~v~  116 (356)
                      ++.+|+|+|+|.+|+-.+..+..+|.+|+++++++.         -    .+..++.|.++. .+..  +-....++.. 
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~---------r----le~aeslGA~~v~i~~~--e~~~~~~gya-  227 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE---------V----AEQVESMGAEFLELDFE--EEGGSGDGYA-  227 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH---------H----HHHHHHcCCeEEEeccc--cccccccchh-
Confidence            688999999999999999999999999888876543         1    234456787743 2321  1000011101 


Q ss_pred             EEEeCCC----------cE-EecCeEEEecCCC--CCchh-hhccccc-ccCcEEEe
Q 018416          117 AVNLRDG----------NR-LPTDMVVVGIGIR--PNTSL-FEGQLTL-EKGGIKVT  158 (356)
Q Consensus       117 ~v~~~~g----------~~-i~~D~vi~a~G~~--p~~~l-~~~~l~~-~~g~I~vd  158 (356)
                       .+++++          +. -.+|.+|-++|..  |...+ .++.+.. ..|++.||
T Consensus       228 -~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVd  283 (509)
T PRK09424        228 -KVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVD  283 (509)
T ss_pred             -hhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEE
Confidence             111121          01 2599999999963  23344 3555554 66777776

>PLN02568 polyamine oxidase

Probab=94.56  E-value=0.054  Score=55.38  Aligned_cols=38  Identities=24%  Similarity=0.321  Sum_probs=33.9

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCC-----CcEEEEeeCCccCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINK-----INVTMVFPEAHCMA   76 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G-----~~Vtlv~~~~~~l~   76 (356)
                      ..+|+|||+|..|+-+|..|++.|     .+|+|+|+++++..
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG   47 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG   47 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence            468999999999999999999887     89999999877643

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=94.53  E-value=0.12  Score=49.61  Aligned_cols=92  Identities=15%  Similarity=0.226  Sum_probs=60.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCcc------CCHH---HHHHHHHHHHhCCCEEEeCCeeeEEE
Q 018416           40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARL------FTPK---IASYYEEYYKSKGVKFVKGTVLSSFD  108 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~~------~d~~---~~~~~~~~l~~~GV~v~~~~~v~~i~  108 (356)
                      .+|.|||+|+.|+-.|..|.++  +++|+++|+.|.++.-.      -.|+   ....+.+.++.....+.-|.+|-.  
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~--   98 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGR--   98 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceecc--
Confidence            4999999999999999998884  68999999998875310      0222   334455566666677766655411  


Q ss_pred             EcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          109 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       109 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                         +     +.+.+ -+-.+|.|+++.|......
T Consensus        99 ---d-----vsl~e-L~~~ydavvLaYGa~~dR~  123 (468)
T KOG1800|consen   99 ---D-----VSLKE-LTDNYDAVVLAYGADGDRR  123 (468)
T ss_pred             ---c-----ccHHH-HhhcccEEEEEecCCCCcc
Confidence               1     11111 1235899999998654443

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.52  E-value=0.14  Score=42.24  Aligned_cols=35  Identities=29%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPE   71 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~   71 (356)
                      ..+++++|+|+|-+|-.++..|...|.+ |+++.|.
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            3689999999999999999999999987 9999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN02676 polyamine oxidase

Probab=94.45  E-value=0.063  Score=54.22  Aligned_cols=39  Identities=15%  Similarity=0.328  Sum_probs=34.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCccCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMA   76 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~l~   76 (356)
                      ...+|+|||+|+.|+-+|..|++.|. +|+++|+++++..
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG   64 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG   64 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence            45689999999999999999999998 6999999987654

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.41  E-value=0.76  Score=45.64  Aligned_cols=35  Identities=11%  Similarity=0.237  Sum_probs=30.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~   72 (356)
                      ...+|+|+|+|..-++.-..|.++|.  +||++.|..
T Consensus       195 ~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG  231 (474)
T COG4529         195 ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG  231 (474)
T ss_pred             CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence            35679999999999999999999987  589998874

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.38  E-value=0.16  Score=51.37  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=31.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++.+++|+|+|.+|+..+..+..+|.+|+++++++
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46799999999999999999999999999987754

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.37  E-value=0.14  Score=51.66  Aligned_cols=78  Identities=21%  Similarity=0.245  Sum_probs=55.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|+|.|.+|+.++..|.++|.+|++.+..+.        .    . +.+++.|+.+..+....            
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~--------~----~-~~l~~~g~~~~~~~~~~------------   65 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPD--------A----L-RPHAERGVATVSTSDAV------------   65 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHH--------H----H-HHHHhCCCEEEcCcchH------------
Confidence            578999999999999999999999999999874321        1    1 23556788765432100            


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                           ...-.+|.||.++|..|+...+.
T Consensus        66 -----~~l~~~D~VV~SpGi~~~~p~~~   88 (488)
T PRK03369         66 -----QQIADYALVVTSPGFRPTAPVLA   88 (488)
T ss_pred             -----hHhhcCCEEEECCCCCCCCHHHH
Confidence                 00113699999999998877554

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=94.37  E-value=0.075  Score=52.37  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=34.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCccCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMAR   77 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~l~~   77 (356)
                      ...+|||||+|..|+-+|..|.+.|. +|+++|..+++..+
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR   60 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR   60 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence            45689999999999999999997765 78999999988665

>TIGR02731 phytoene_desat phytoene desaturase

Probab=94.31  E-value=0.18  Score=50.12  Aligned_cols=57  Identities=19%  Similarity=0.339  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc-----EEecCeEEEecCC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGI  137 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-----~i~~D~vi~a~G~  137 (356)
                      ..+.+.+.+.+++.|+++++++.|++|+..+++.+..+++.+++     ++.+|.||+++..
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            45677888888889999999999999986566767677776665     7999999999864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=94.26  E-value=0.093  Score=46.49  Aligned_cols=91  Identities=19%  Similarity=0.172  Sum_probs=59.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  119 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~  119 (356)
                      +++.|+|.|.+|--+|..|++.|++|++-.++.        ++-.+...+.+   +..         ++..+        
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~--------~~~~~a~a~~l---~~~---------i~~~~--------   53 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRG--------PKALAAAAAAL---GPL---------ITGGS--------   53 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCC--------hhHHHHHHHhh---ccc---------cccCC--------
Confidence            478999999999999999999999999986653        22222222222   222         21100        


Q ss_pred             eCCCcEEecCeEEEecCCCCCchhhhcccccccCcEEEec
Q 018416          120 LRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG  159 (356)
Q Consensus       120 ~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~~~g~I~vd~  159 (356)
                       ...-.-.+|.|++++.+....+.+.+......+.|++|.
T Consensus        54 -~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~   92 (211)
T COG2085          54 -NEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDA   92 (211)
T ss_pred             -hHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEec
Confidence             001123489999999988877776654333447899885

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=94.24  E-value=0.053  Score=54.83  Aligned_cols=34  Identities=24%  Similarity=0.263  Sum_probs=30.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~   73 (356)
                      -.|+|||||.+|+-+|..|+++  |.+|+|+|+.+.
T Consensus         6 ~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~   41 (494)
T PRK05257          6 TDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG   41 (494)
T ss_pred             ceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            4799999999999999999985  789999998753

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.22  E-value=0.058  Score=51.37  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=33.5

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      -++|.|||+|.+|..+|..++..|++|+++++.+...
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~   43 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAE   43 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence            3789999999999999999999999999999877543

>TIGR02734 crtI_fam phytoene desaturase

Probab=94.16  E-value=0.2  Score=50.62  Aligned_cols=57  Identities=21%  Similarity=0.337  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      ..+.+.+.+.+++.|+++++++.|++|.. +++++..|++.+|+++.+|.||++++..
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHH
Confidence            46778888889999999999999999986 4566667888899999999999988753

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.10  E-value=0.072  Score=49.82  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=32.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      ++|.|||+|..|..+|..|++.|.+|+++++.+.-
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~   38 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEA   38 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            58999999999999999999999999999987653

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.94  E-value=0.24  Score=42.60  Aligned_cols=50  Identities=24%  Similarity=0.266  Sum_probs=38.2

Q ss_pred             CCHHHHHHHHHHH-hcCCCCcEEEECCch-HHHHHHHHHHHCCCcEEEEeeC
Q 018416           22 RDLADANRLVNVM-KSCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        22 ~~~~da~~i~~~l-~~~~~~~vvVvGgG~-iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .+..-+.++.+.+ ....+++++|||+|- +|.-+|..|.++|.+|+++.|.
T Consensus        26 ~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          26 CTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             ChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            3444455544443 245789999999997 5999999999999999999875

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=93.91  E-value=0.076  Score=51.71  Aligned_cols=38  Identities=29%  Similarity=0.308  Sum_probs=32.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcE--EEEeeCCccC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINV--TMVFPEAHCM   75 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~V--tlv~~~~~~l   75 (356)
                      .+.+++|+|||.+|+.+|..|++++.++  |++|..+++.
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG   49 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG   49 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence            5789999999999999999999998876  4588887763

>PRK08071 L-aspartate oxidase; Provisional

Probab=93.90  E-value=0.08  Score=53.79  Aligned_cols=54  Identities=26%  Similarity=0.335  Sum_probs=38.8

Q ss_pred             CcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018416          153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       153 g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~  208 (356)
                      |+|.||.+.+|++|++||+|+|+...  .+|..+.. .....+.-.|+.|++++...
T Consensus       333 GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~~  387 (510)
T PRK08071        333 GGVKTNLDGETSIPGLYAIGEVACTG--VHGANRLASNSLLEGLVFGKRAAEHILTK  387 (510)
T ss_pred             CCEEECCCCcccCCCeEEcccccccc--cCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence            78999999999999999999997521  11222111 23467788899999988643

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.87  E-value=0.19  Score=50.52  Aligned_cols=81  Identities=15%  Similarity=0.098  Sum_probs=54.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+|+++|+|.|-.|..+|..|.++|.+|++.+..+..  .  .++.     +.|++ ++.+..+..-       .     
T Consensus         7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~--~--~~~~-----~~l~~-~~~~~~~~~~-------~-----   64 (468)
T PRK04690          7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAV--E--AREV-----GALAD-AALLVETEAS-------A-----   64 (468)
T ss_pred             CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcc--c--chHH-----HHHhh-cCEEEeCCCC-------h-----
Confidence            4689999999999999999999999999998865431  1  1111     12444 3433322110       0     


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                           ...-.+|+||.++|..|+...+.
T Consensus        65 -----~~~~~~d~vV~SpgI~~~~p~~~   87 (468)
T PRK04690         65 -----QRLAAFDVVVKSPGISPYRPEAL   87 (468)
T ss_pred             -----HHccCCCEEEECCCCCCCCHHHH
Confidence                 00124799999999999877554

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=93.83  E-value=0.079  Score=54.75  Aligned_cols=55  Identities=20%  Similarity=0.253  Sum_probs=38.8

Q ss_pred             cCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018416          152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~  208 (356)
                      .|+|.||.+++|++|++||+|+|+...  +.|..+.- .....|.-.|++|++++...
T Consensus       358 ~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~~  413 (582)
T PRK09231        358 MGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAER  413 (582)
T ss_pred             CCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999997521  12322211 23456777888888887643

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.81  E-value=0.079  Score=54.24  Aligned_cols=55  Identities=18%  Similarity=0.215  Sum_probs=39.8

Q ss_pred             ccCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018416          151 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       151 ~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~  208 (356)
                      ..|+|.+|++.||++|++||+|+|+...+   |..+.- .....|...|++|+++++..
T Consensus       347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~h---G~~rlgG~sl~~a~v~Gr~Ag~~aa~~  402 (543)
T PRK06263        347 FMGGIRINEDCETNIPGLFACGEVAGGVH---GANRLGGNALADTQVFGAIAGKSAAKN  402 (543)
T ss_pred             ecCCEEECCCCcccCCCeEeccccccCCC---CCCccchhhhhhhHHHHHHHHHHHHHH
Confidence            35889999999999999999999975322   221111 23456788899998888653

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.79  E-value=0.078  Score=44.96  Aligned_cols=32  Identities=34%  Similarity=0.310  Sum_probs=29.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      +|+|+|+|..|.-+|..|++.|.+|+|..|.+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999997754

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.72  E-value=0.084  Score=49.40  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      ++|.|||+|.+|..+|..|++.|.+|+++++.+.-
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~   36 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQ   36 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHH
Confidence            57999999999999999999999999999887653

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=93.65  E-value=0.091  Score=49.02  Aligned_cols=37  Identities=16%  Similarity=0.184  Sum_probs=30.9

Q ss_pred             cEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCccCCc
Q 018416           41 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMAR   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~l~~   77 (356)
                      .++|||+|..|+-+|..|++.| .+|.|+|+++...+.
T Consensus         2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~   39 (296)
T PF00732_consen    2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPE   39 (296)
T ss_dssp             EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTS
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccc
Confidence            4799999999999999999997 699999999876553

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK07804 L-aspartate oxidase; Provisional

Probab=93.58  E-value=0.078  Score=54.29  Aligned_cols=55  Identities=24%  Similarity=0.229  Sum_probs=38.0

Q ss_pred             ccCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018416          151 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       151 ~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  207 (356)
                      ..|+|.||+.++|++|++||+|||+...  .+|..+.. .....+...|+.+++++..
T Consensus       356 t~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGa~~l~~~sl~~~~v~G~~ag~~aa~  411 (541)
T PRK07804        356 SCGGVVTDVYGRTSVPGLYAAGEVACTG--VHGANRLASNSLLEGLVVGERAGAAAAA  411 (541)
T ss_pred             cCCCEEECCCCcccCCCeEEcccccccc--cCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999997421  11221111 1234567778888888764

>PRK09077 L-aspartate oxidase; Provisional

Probab=93.52  E-value=0.095  Score=53.58  Aligned_cols=55  Identities=22%  Similarity=0.288  Sum_probs=39.1

Q ss_pred             cCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018416          152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~  208 (356)
                      .|+|.||.+.||++|++||+|+|+...  ..|..+.- .....|.-.|++|++++...
T Consensus       353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~gnsl~~~~vfG~~Ag~~aa~~  408 (536)
T PRK09077        353 CGGVMVDLHGRTDLDGLYAIGEVSYTG--LHGANRMASNSLLECLVYGRSAAEDILSR  408 (536)
T ss_pred             cCCeeECCCCccccCCEEecccccccc--cCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence            367899999999999999999997421  11222111 23457788899999988653

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.44  E-value=0.13  Score=46.36  Aligned_cols=34  Identities=15%  Similarity=0.224  Sum_probs=31.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++++++|||||.+|..=+..|.+.|.+||++.+.
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~   57 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK   57 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5789999999999999999999999999999653

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=93.42  E-value=0.078  Score=49.98  Aligned_cols=35  Identities=23%  Similarity=0.192  Sum_probs=32.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      +.|-|||+|..|.|.|..++++|+.|.|.++++.-
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            57899999999999999999999999999998653

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=93.42  E-value=0.12  Score=50.29  Aligned_cols=98  Identities=21%  Similarity=0.333  Sum_probs=65.2

Q ss_pred             cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCcc--CCccCCHHHH--------HHH---------------------
Q 018416           41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHC--MARLFTPKIA--------SYY---------------------   87 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~--l~~~~d~~~~--------~~~---------------------   87 (356)
                      .-+|||+|..+...+......  +.+|.+|...+++  |.+.++.++.        ..+                     
T Consensus       180 p~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ffv  259 (659)
T KOG1346|consen  180 PYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFFV  259 (659)
T ss_pred             ceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCccee
Confidence            369999998887776666544  5567777555432  1111222211        110                     


Q ss_pred             ----HHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           88 ----EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        88 ----~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                          ......-||-+..+.++..+.. ++.   .|.++||.+|.+|-+++|||.+|...
T Consensus       260 speDLp~~~nGGvAvl~G~kvvkid~-~d~---~V~LnDG~~I~YdkcLIATG~~Pk~l  314 (659)
T KOG1346|consen  260 SPEDLPKAVNGGVAVLRGRKVVKIDE-EDK---KVILNDGTTIGYDKCLIATGVRPKKL  314 (659)
T ss_pred             ChhHCcccccCceEEEeccceEEeec-ccC---eEEecCCcEeehhheeeecCcCcccc
Confidence                1122345899999999999975 333   57789999999999999999999764

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=93.27  E-value=0.12  Score=53.50  Aligned_cols=55  Identities=24%  Similarity=0.271  Sum_probs=38.6

Q ss_pred             cCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018416          152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~  208 (356)
                      .|+|.+|...+|++|++||+|+|+...  ++|..+.- .....+.-.|++|+.++...
T Consensus       357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~~  412 (580)
T TIGR01176       357 MGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAER  412 (580)
T ss_pred             CCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence            467899999999999999999997421  12222111 23456778888888887643

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.23  E-value=0.099  Score=43.00  Aligned_cols=33  Identities=27%  Similarity=0.484  Sum_probs=29.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   71 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~   71 (356)
                      .++|+|+|.|-+|.++|..|++.|. ++++++..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4689999999999999999999999 68998775

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=93.21  E-value=0.2  Score=49.92  Aligned_cols=74  Identities=22%  Similarity=0.248  Sum_probs=53.7

Q ss_pred             cEEEECCchHHHH-HHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE
Q 018416           41 NAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  119 (356)
Q Consensus        41 ~vvVvGgG~iGlE-~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~  119 (356)
                      ++.+||-|-+|+. +|..|.++|.+|++.+..+.       +     ..+.|++.||++..+.....             
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~~~-------------   55 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAEN-------A-----TTKRLEALGIPIYIGHSAEN-------------   55 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcc-------h-----HHHHHHHCcCEEeCCCCHHH-------------
Confidence            4789999999998 99999999999999886542       1     12346778998875421100             


Q ss_pred             eCCCcEEecCeEEEecCCCCCchhh
Q 018416          120 LRDGNRLPTDMVVVGIGIRPNTSLF  144 (356)
Q Consensus       120 ~~~g~~i~~D~vi~a~G~~p~~~l~  144 (356)
                      +.     .+|+||.+.|..|+...+
T Consensus        56 ~~-----~~d~vV~spgi~~~~p~~   75 (448)
T TIGR01082        56 LD-----DADVVVVSAAIKDDNPEI   75 (448)
T ss_pred             CC-----CCCEEEECCCCCCCCHHH
Confidence            11     279999999998876644

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>TIGR00551 nadB L-aspartate oxidase

Probab=93.18  E-value=0.12  Score=52.09  Aligned_cols=56  Identities=25%  Similarity=0.289  Sum_probs=40.2

Q ss_pred             ccCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018416          151 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       151 ~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~  208 (356)
                      ..|+|.||...||++|++||+|+|+...  ++|..+.. .....|.-.|+.|++++...
T Consensus       332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~~  388 (488)
T TIGR00551       332 TCGGISVDDHGRTTVPGLYAIGEVACTG--LHGANRLASNSLLECLVFGWSAAEDISRR  388 (488)
T ss_pred             ecCCEEECCCCcccCCCEEECccccccc--cCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence            4589999999999999999999997421  11222111 23457888899999988643

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=93.18  E-value=0.28  Score=48.57  Aligned_cols=78  Identities=22%  Similarity=0.249  Sum_probs=53.5

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHH-hCCCEEEeCCeeeEEEEcCCCcEEEEE
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVN  119 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~g~v~~v~  119 (356)
                      ++.|||-|-+|+-+|..|.++|.+|+..+..+....   .  ..   ...++ ..||++..+.....           + 
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~---~--~~---~~~~~~~~gi~~~~g~~~~~-----------~-   60 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEEL---E--PS---MGQLRLNEGSVLHTGLHLED-----------L-   60 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccc---h--hH---HHHHhhccCcEEEecCchHH-----------h-
Confidence            478999999999999999999999999987654211   1  00   11223 35888876532100           1 


Q ss_pred             eCCCcEEecCeEEEecCCCCCchhh
Q 018416          120 LRDGNRLPTDMVVVGIGIRPNTSLF  144 (356)
Q Consensus       120 ~~~g~~i~~D~vi~a~G~~p~~~l~  144 (356)
                            -.+|+||.++|..|+...+
T Consensus        61 ------~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087        61 ------NNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             ------ccCCEEEECCCCCCCCHHH
Confidence                  1379999999998876644

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=93.12  E-value=0.18  Score=44.66  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=31.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~   71 (356)
                      ..++|+|+|+|-.|.++|..|++.|. ++++++..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            56899999999999999999999999 69999887

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=93.09  E-value=0.12  Score=52.13  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=30.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHC--CCcEEEEee
Q 018416           39 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFP   70 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~   70 (356)
                      ...|+|||||.+|+-+|..|++.  +.+|+|+|+
T Consensus         6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr   39 (497)
T PRK13339          6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER   39 (497)
T ss_pred             cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence            34799999999999999999999  899999999

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=93.01  E-value=0.49  Score=47.20  Aligned_cols=61  Identities=18%  Similarity=0.268  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           80 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        80 d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      ..++.+.+.+.++..|.++++++.|++|..++++++..|++.+|+++.|+.||......|.
T Consensus       231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            3578888888889999999999999999875567778899999999999999998887765

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.82  E-value=0.17  Score=40.10  Aligned_cols=72  Identities=26%  Similarity=0.300  Sum_probs=47.8

Q ss_pred             EEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC
Q 018416           42 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR  121 (356)
Q Consensus        42 vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~  121 (356)
                      ++|+|.|..|.+++..|.+.+.+|+++++.+.         .    .+.+++.|++++.+.....      .     .+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~---------~----~~~~~~~~~~~i~gd~~~~------~-----~l~   56 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE---------R----VEELREEGVEVIYGDATDP------E-----VLE   56 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH---------H----HHHHHHTTSEEEES-TTSH------H-----HHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH---------H----HHHHHhcccccccccchhh------h-----HHh
Confidence            68999999999999999997779999987543         2    3456677887665432100      0     011


Q ss_pred             CCcEEecCeEEEecCC
Q 018416          122 DGNRLPTDMVVVGIGI  137 (356)
Q Consensus       122 ~g~~i~~D~vi~a~G~  137 (356)
                      .-..-.++.++++++.
T Consensus        57 ~a~i~~a~~vv~~~~~   72 (116)
T PF02254_consen   57 RAGIEKADAVVILTDD   72 (116)
T ss_dssp             HTTGGCESEEEEESSS
T ss_pred             hcCccccCEEEEccCC
Confidence            1122368899998884

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=92.81  E-value=0.14  Score=52.78  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=32.1

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .-.|||||+|..|+.+|..+++.|.+|+|+++.+.
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~   43 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV   43 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            34799999999999999999999999999998764

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=92.79  E-value=0.13  Score=48.60  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=31.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      ++|.|||+|.+|..+|..|++.|.+|+++++.+..
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~   37 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAA   37 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHH
Confidence            47999999999999999999999999999987653

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=92.75  E-value=0.13  Score=51.19  Aligned_cols=38  Identities=16%  Similarity=0.070  Sum_probs=34.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      -.|+|||+|..|+-+|..|++.|++|.++++.+....+
T Consensus         5 ~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~   42 (443)
T PTZ00363          5 YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGE   42 (443)
T ss_pred             ceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcc
Confidence            36999999999999999999999999999999877554

>PRK08401 L-aspartate oxidase; Provisional

Probab=92.65  E-value=0.16  Score=50.95  Aligned_cols=55  Identities=22%  Similarity=0.286  Sum_probs=39.3

Q ss_pred             ccCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018416          151 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       151 ~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  207 (356)
                      ..|+|.||...||++|++||+|+|+...  .+|..+.. .....+...|+.|++++..
T Consensus       309 t~GGi~vd~~~~t~IpGLyAaGE~a~~G--~hG~nrl~gnsl~~~~v~G~~ag~~aa~  364 (466)
T PRK08401        309 TIGGISVDTFYRTGIKNLYAIGEAASNG--FHGANRLASNSLLECIVSGLEVARTISR  364 (466)
T ss_pred             cCCCEEECCCCcccCCCEEECccccccC--CCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence            3589999999999999999999997421  12322211 2345677888999988864

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=92.65  E-value=0.12  Score=49.19  Aligned_cols=38  Identities=24%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      +..+|+|||+|.+|+.+|..|+++ .+||++|...++..
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGG   44 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGG   44 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccC
Confidence            457899999999999999999987 79999999887653

>PRK09620 hypothetical protein; Provisional

Probab=92.53  E-value=0.5  Score=42.79  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=29.4

Q ss_pred             CCCcEEEECC-----------------chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-----------------GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-----------------G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .+++|+|-+|                 |++|..+|..|.++|.+|+++...
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~   52 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY   52 (229)
T ss_pred             CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4678888765                 899999999999999999999753

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=92.51  E-value=0.17  Score=45.68  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=31.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ++++|+|+|-.|..+|..|.+.|.+|+++++.+.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            4789999999999999999999999999987653

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=92.47  E-value=0.15  Score=42.28  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             EEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           42 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        42 vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      ++|+|+|.++..++..++..|.+||+++.++..++
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~~   35 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERFP   35 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-T
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccccC
Confidence            58999999999999999999999999999876444

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.41  E-value=0.16  Score=47.57  Aligned_cols=35  Identities=23%  Similarity=0.172  Sum_probs=32.1

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      -++|.|||+|..|..+|..|++.|.+|+++++.+.
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            47899999999999999999999999999987654

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.34  E-value=0.2  Score=49.39  Aligned_cols=35  Identities=34%  Similarity=0.391  Sum_probs=32.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+++|+|+|.|.+|..+|..++..|.+|+++++.+
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            68999999999999999999999999999987654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=92.27  E-value=0.19  Score=42.87  Aligned_cols=35  Identities=31%  Similarity=0.298  Sum_probs=29.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+|+++|+|-|.+|--+|..|+.+|.+|++.+..|
T Consensus        22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            68999999999999999999999999999998754

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PLN02976 amine oxidase

Probab=92.25  E-value=0.21  Score=55.98  Aligned_cols=40  Identities=23%  Similarity=0.328  Sum_probs=35.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      ..++++|||+|+.|+.+|..|.+.|.+|+++++++.+..+
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr  731 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR  731 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence            3578999999999999999999999999999998877554

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.24  E-value=0.21  Score=46.49  Aligned_cols=36  Identities=25%  Similarity=0.262  Sum_probs=32.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      +++.|||+|.+|..+|..|++.|.+|+++++.+..+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~   39 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAV   39 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHH
Confidence            579999999999999999999999999998776543

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=92.19  E-value=0.15  Score=52.86  Aligned_cols=40  Identities=10%  Similarity=0.106  Sum_probs=27.2

Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      ...+|++|++||+|||+.....        .++..+..+|.+++.++.
T Consensus       400 ~~~~T~i~gLyA~Ge~~~~~~h--------~l~~nsl~eg~~ag~~a~  439 (614)
T TIGR02061       400 YNRMTTVEGLFTCGDGVGASPH--------KFSSGSFTEGRIAAKAAV  439 (614)
T ss_pred             cCCccccCCEEeceecccCcch--------hhHHhHHHHHHHHHHHHH
Confidence            7889999999999999753210        234455556666665544

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=92.19  E-value=1.1  Score=43.67  Aligned_cols=48  Identities=21%  Similarity=0.349  Sum_probs=36.6

Q ss_pred             hCCCEEEeCCeeeEEEE------cCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           93 SKGVKFVKGTVLSSFDV------DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        93 ~~GV~v~~~~~v~~i~~------~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      ...|+++..+++..+..      ++++....+.++||..+.+|++|=+-|+...
T Consensus       165 ~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~  218 (481)
T KOG3855|consen  165 SDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNSV  218 (481)
T ss_pred             cCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccch
Confidence            35788888887655543      4567777899999999999999888886543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=92.18  E-value=0.47  Score=44.47  Aligned_cols=56  Identities=20%  Similarity=0.274  Sum_probs=40.8

Q ss_pred             CeEEeCCHHHHHHHH-HHHh----cCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           17 NVCYLRDLADANRLV-NVMK----SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        17 ~v~~l~~~~da~~i~-~~l~----~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++...++..-++... ..++    +..+++++|+|.|.+|..+|..|...|.+|+++.|.+
T Consensus       124 ~va~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       124 DVAIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             ceEEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            454455554444222 2222    2357899999999999999999999999999998864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.10  E-value=0.33  Score=52.26  Aligned_cols=76  Identities=24%  Similarity=0.186  Sum_probs=55.7

Q ss_pred             CCcEEEECCchHHHHH-HHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           39 GGNAVVIGGGYIGMEC-AASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~-A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      -+++.|+|-|-+|+.. |..|.++|.+|+..+..+.       +.     .+.|++.||+++.+.....           
T Consensus         4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~-------~~-----~~~L~~~gi~~~~g~~~~~-----------   60 (809)
T PRK14573          4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG-------KT-----VEKLKAKGARFFLGHQEEH-----------   60 (809)
T ss_pred             cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC-------hH-----HHHHHHCCCEEeCCCCHHH-----------
Confidence            3579999999999998 9999999999999886532       11     2247778998876532100           


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhh
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLF  144 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~  144 (356)
                        +     -.+|+||.++|..|+...+
T Consensus        61 --~-----~~~d~vV~SpgI~~~~p~~   80 (809)
T PRK14573         61 --V-----PEDAVVVYSSSISKDNVEY   80 (809)
T ss_pred             --c-----CCCCEEEECCCcCCCCHHH
Confidence              1     1378999999998877644

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=92.03  E-value=0.2  Score=52.06  Aligned_cols=51  Identities=20%  Similarity=0.191  Sum_probs=35.8

Q ss_pred             CcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHc
Q 018416          153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       153 g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~  206 (356)
                      |+|.+|...+|++|++||+|+|+...   .|..+.- .....+...|+.|+.++.
T Consensus       371 gG~~~d~~~~t~i~gL~a~Ge~~~~~---hg~nrl~~~sl~~~~v~g~~Ag~~aa  422 (603)
T TIGR01811       371 GGLWVDYDQMTNIPGLFAAGECDFSQ---HGANRLGANSLLSAIADGYFALPFTI  422 (603)
T ss_pred             CCeeECCCCcccCCCEEECcccccCc---CCCccchhHHHHHHHHHHHHHHHHHH
Confidence            67889999999999999999997532   2322211 233466677777777765

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.00  E-value=0.19  Score=51.94  Aligned_cols=54  Identities=20%  Similarity=0.134  Sum_probs=38.7

Q ss_pred             ccCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018416          151 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       151 ~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  207 (356)
                      ..|+|.||.+.+|++|++||+|+|+...   +|..+.. .....|.-.|++|+.++..
T Consensus       354 ~~GGi~vd~~~~t~I~GLyAaGE~~~g~---hGanrlggnsl~~~lv~Gr~Ag~~aa~  408 (589)
T PRK08641        354 SMGGLWVDYDQMTNIPGLFAAGECDYSY---HGANRLGANSLLSAIYGGMVAGPNAVE  408 (589)
T ss_pred             eCCCeEECCCCCeECCCEEECcccccCC---CCCCccchhhHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999997532   2322221 2345677788888877653

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=91.99  E-value=0.22  Score=49.34  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=30.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      -.++|||+|..|+.+|..+++.|.+|++++++
T Consensus         3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~   34 (422)
T PRK05329          3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKG   34 (422)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence            36999999999999999999999999999976

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=91.98  E-value=1  Score=46.46  Aligned_cols=53  Identities=17%  Similarity=0.248  Sum_probs=40.2

Q ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           85 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        85 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                      ..+....++.|..++.++.|+++.. .++....|++.-| .|++..++=|+|+-.
T Consensus       191 ~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G-~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  191 QALARAASALGALVIENCPVTGLHV-ETDKFGGVETPHG-SIETECVVNAAGVWA  243 (856)
T ss_pred             HHHHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCc-ceecceEEechhHHH
Confidence            3345566778999999999999976 3444447877776 589999999999644

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.92  E-value=0.55  Score=46.78  Aligned_cols=79  Identities=16%  Similarity=0.240  Sum_probs=54.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHh--CCCEEEeCC-eeeEEEEcCCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS--KGVKFVKGT-VLSSFDVDSNGK  114 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~--~GV~v~~~~-~v~~i~~~~~g~  114 (356)
                      ....++|+|-|-+|+.+|..|.++|.+|+..+..+.      .+ .    .+.|++  .||+++.+. ....        
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~------~~-~----~~~l~~~~~g~~~~~~~~~~~~--------   65 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ------PP-G----LDTLAREFPDVELRCGGFDCEL--------   65 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC------ch-h----HHHHHhhcCCcEEEeCCCChHH--------
Confidence            356899999999999999999999999999987542      11 1    123454  377776431 1100        


Q ss_pred             EEEEEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416          115 VVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       115 v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                         +       -.+|.||+++|..|+...+.
T Consensus        66 ---~-------~~~d~vV~sp~i~~~~p~~~   86 (448)
T PRK03803         66 ---L-------VQASEIIISPGLALDTPALR   86 (448)
T ss_pred             ---h-------cCCCEEEECCCCCCCCHHHH
Confidence               0       13799999999988766443

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=91.91  E-value=0.27  Score=42.09  Aligned_cols=34  Identities=21%  Similarity=0.144  Sum_probs=29.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++.+++|+|+|.+|..++..|..+|.+|++++..
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~   52 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER   52 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence            5789999999999999999999999999999764

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=91.91  E-value=0.3  Score=42.25  Aligned_cols=36  Identities=25%  Similarity=0.202  Sum_probs=32.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .++++.|||.|.||-++|..|...|.+|..+.+...
T Consensus        35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~   70 (178)
T PF02826_consen   35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK   70 (178)
T ss_dssp             TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred             CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence            689999999999999999999999999999988764

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=91.91  E-value=0.4  Score=46.51  Aligned_cols=55  Identities=15%  Similarity=0.180  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      ..+...+.+.+++ |++++.++.|++++.+ ++. ..+++.+|..+.+|.||+|+|.-
T Consensus       135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~  189 (381)
T TIGR03197       135 PQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQ  189 (381)
T ss_pred             HHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCcc
Confidence            4566777777888 9999999999999863 333 45777888889999999999954

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.88  E-value=0.19  Score=47.10  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=31.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ++|.|||+|.+|..+|..|++.|.+|+++++.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            6899999999999999999999999999987654

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=91.84  E-value=0.23  Score=51.08  Aligned_cols=35  Identities=26%  Similarity=0.353  Sum_probs=32.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.+.+
T Consensus         8 ~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~   42 (557)
T PRK07843          8 YDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY   42 (557)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            36999999999999999999999999999997653

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=91.82  E-value=0.21  Score=51.38  Aligned_cols=56  Identities=20%  Similarity=0.207  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe---CCCc--EEecCeEEEecCC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGI  137 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~vi~a~G~  137 (356)
                      ..+...+.+.+++.||+++.++.++++.. ++|++..+..   .+|+  .+.++.||+|+|.
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG  189 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG  189 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence            45666777777788999999999999876 3566655443   3454  4778888888883

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=91.82  E-value=0.62  Score=46.93  Aligned_cols=57  Identities=18%  Similarity=0.243  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-----cEEecCeEEEecCCC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-----NRLPTDMVVVGIGIR  138 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-----~~i~~D~vi~a~G~~  138 (356)
                      ..+.+.+.+.++++|+++++++.|++|.. +++.+..+.+.++     +++.+|.||+++...
T Consensus       232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       232 QTLSDRLVEALKRDGGNLLTGQRVTAIHT-KGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCceEEEEEE-eCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence            45788888999999999999999999987 3454445555554     578999999998753

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=91.78  E-value=0.13  Score=48.15  Aligned_cols=36  Identities=25%  Similarity=0.328  Sum_probs=32.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .+.+|+|+|||.+|.+.|....-.|.+||+++....
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~  202 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID  202 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence            456899999999999999999999999999988754

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=91.77  E-value=0.49  Score=41.40  Aligned_cols=35  Identities=34%  Similarity=0.482  Sum_probs=31.3

Q ss_pred             CCCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           37 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        37 ~~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ..+++++|+|+ |.+|..++..|.+.|.+|+++.|.
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            35789999996 999999999999999999999764

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.67  E-value=1.7  Score=41.53  Aligned_cols=98  Identities=23%  Similarity=0.351  Sum_probs=65.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC---------c---------------------------cCCH--
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------R---------------------------LFTP--   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~---------~---------------------------~~d~--   81 (356)
                      =...|||||--|+-.|...+..|.+|-++|..-.+..         +                           .||-  
T Consensus        21 fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~~  100 (478)
T KOG0405|consen   21 FDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWKV  100 (478)
T ss_pred             cceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHHH
Confidence            3579999999999999999999999999987621100         0                           0111  


Q ss_pred             -------H---HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcE--EecCeEEEecCCCCCch
Q 018416           82 -------K---IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        82 -------~---~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~vi~a~G~~p~~~  142 (356)
                             +   +-...++.|.+.+|+++.+..  ++.  +++.+ .|+..||++  +.+..+++|+|.+|...
T Consensus       101 ik~krdayi~RLngIY~~~L~k~~V~~i~G~a--~f~--~~~~v-~V~~~d~~~~~Ytak~iLIAtGg~p~~P  168 (478)
T KOG0405|consen  101 IKQKRDAYILRLNGIYKRNLAKAAVKLIEGRA--RFV--SPGEV-EVEVNDGTKIVYTAKHILIATGGRPIIP  168 (478)
T ss_pred             HHhhhhHHHHHHHHHHHhhccccceeEEeeeE--EEc--CCCce-EEEecCCeeEEEecceEEEEeCCccCCC
Confidence                   1   112234556667888887643  232  34443 577777753  67899999999887655

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=91.66  E-value=0.53  Score=38.97  Aligned_cols=31  Identities=23%  Similarity=0.386  Sum_probs=28.4

Q ss_pred             cEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416           41 NAVVIGGGYIGMECAASLVINKI-NVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~   71 (356)
                      +|+|||.|-+|.++|..|.+.|. ++++++..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999998 69999765

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07512 L-aspartate oxidase; Provisional

Probab=91.65  E-value=0.22  Score=50.57  Aligned_cols=55  Identities=31%  Similarity=0.314  Sum_probs=38.3

Q ss_pred             cCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018416          152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~  208 (356)
                      .|+|.||...+|++|++||+|+|+...  .+|..+.. .....+...|++|++++...
T Consensus       341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G--~hGanrl~gnsl~~~~v~G~~ag~~aa~~  396 (513)
T PRK07512        341 MGGIAVDADGRSSLPGLWAAGEVASTG--LHGANRLASNSLLEAVVFAARAAEDIAGT  396 (513)
T ss_pred             cCCEEECCCCccccCCEEecccccccC--CCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999997321  11222111 23456777889988887653

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=91.63  E-value=0.46  Score=42.06  Aligned_cols=34  Identities=21%  Similarity=0.337  Sum_probs=31.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~   71 (356)
                      ..++|+|||.|-+|.++|..|++.|. +++++++.
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            56899999999999999999999998 79999876

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=91.63  E-value=1.8  Score=41.96  Aligned_cols=37  Identities=24%  Similarity=0.211  Sum_probs=32.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      ..-.++|||+|+-|.-.|...+++|.+...++.+..+
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L   74 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL   74 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence            3468999999999999999999999999999986543

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=91.54  E-value=0.23  Score=46.58  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=32.5

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      -++|.|||+|.+|..+|..|+..|.+|+++++.+.-
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   39 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAA   39 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            368999999999999999999999999999887653

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=91.43  E-value=0.22  Score=52.77  Aligned_cols=38  Identities=21%  Similarity=0.216  Sum_probs=34.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      -++|.|||+|..|..+|..++..|++|++++..+.-+.
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~  350 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLD  350 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence            35799999999999999999999999999998876544

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.40  E-value=0.22  Score=52.78  Aligned_cols=37  Identities=22%  Similarity=0.237  Sum_probs=33.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      ++|.|||+|..|..+|..++..|++|++++..+.-+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~  350 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALD  350 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence            5799999999999999999999999999998876544

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=91.39  E-value=0.24  Score=50.25  Aligned_cols=39  Identities=23%  Similarity=0.185  Sum_probs=34.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      +-++|.|||+|..|..+|..|++.|++|+++++.+..+.
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~   42 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALA   42 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence            357899999999999999999999999999998876544

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.34  E-value=1  Score=42.18  Aligned_cols=51  Identities=22%  Similarity=0.273  Sum_probs=39.9

Q ss_pred             eCCHHHHHHHHHHHh-cCCCCcEEEECCch-HHHHHHHHHHHCCCcEEEEeeC
Q 018416           21 LRDLADANRLVNVMK-SCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        21 l~~~~da~~i~~~l~-~~~~~~vvVvGgG~-iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      -.|.....++.+... ...+++++|||.|. +|.-+|..|.++|..||++++.
T Consensus       139 PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~  191 (286)
T PRK14175        139 PCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR  191 (286)
T ss_pred             CCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            345555555555442 34789999999877 9999999999999999999864

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=91.28  E-value=0.47  Score=46.02  Aligned_cols=50  Identities=24%  Similarity=0.390  Sum_probs=38.0

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc-------CCccCCHHHHHHHHHH
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------MARLFTPKIASYYEEY   90 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~-------l~~~~d~~~~~~~~~~   90 (356)
                      ++.|+|.|++|+-.|..|++.|++|+.++..+.-       ..+.++|.+.+.+++.
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~   58 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKEN   58 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhc
Confidence            6899999999999999999999999999876421       1224566665555443

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=91.21  E-value=0.36  Score=44.19  Aligned_cols=39  Identities=21%  Similarity=0.217  Sum_probs=34.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      +..+++|+|+|.++..+|..+...|.+|++++.++...+
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~  137 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFP  137 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCccccc
Confidence            456999999999999999999999999999998876443

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK06175 L-aspartate oxidase; Provisional

Probab=91.20  E-value=0.3  Score=48.55  Aligned_cols=54  Identities=26%  Similarity=0.260  Sum_probs=39.5

Q ss_pred             ccCcEEEecccccCCCCEEEEccccc-cCccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018416          151 EKGGIKVTGRLQSSNSSVYAVGDVAA-FPLKLLGETRRL-EHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       151 ~~g~I~vd~~l~ts~~~VyAiGD~~~-~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  207 (356)
                      ..|+|.||...||+.|++||+|.|+. ..   +|..+.. .....+.--|++|++++..
T Consensus       330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~---hG~nrl~gnsl~~~lvfGr~Ag~~a~~  385 (433)
T PRK06175        330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGV---HGANRLASNSLLEGLVFSKRGAEKINS  385 (433)
T ss_pred             ecCCEEECCCccccCCCeEecccccccCC---CccccchhHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999974 22   2222111 2345778889999998853

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.20  E-value=0.3  Score=50.27  Aligned_cols=55  Identities=15%  Similarity=0.183  Sum_probs=38.3

Q ss_pred             ccCcEEEecccccC-CCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018416          151 EKGGIKVTGRLQSS-NSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       151 ~~g~I~vd~~l~ts-~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  207 (356)
                      ..|+|.||.+.+|+ +|++||+|+|+...  ..|..+.- .....+.-.|++|+.++..
T Consensus       345 ~~GGi~vd~~~~t~~IpGLyAaGE~a~~g--~hGanrlggnsl~~~~v~G~~Ag~~aa~  401 (566)
T PRK06452        345 YMGGIDVDIDGRNPDIVGLFSAGEAACVS--VHGANRLGSNSLLDTLVFGQVTGRTVVQ  401 (566)
T ss_pred             ecCCeEECCCCCcCCcCCeEecccccccC--CCCcccccchHHHHHHHHHHHHHHHHHH
Confidence            36899999999995 99999999997521  11222111 1345677888888888754

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=91.15  E-value=0.27  Score=45.95  Aligned_cols=31  Identities=29%  Similarity=0.379  Sum_probs=29.3

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++.|||+|.+|.-+|..|++.|.+|+++.|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            6899999999999999999999999999874

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=91.14  E-value=0.63  Score=46.24  Aligned_cols=56  Identities=16%  Similarity=0.269  Sum_probs=45.4

Q ss_pred             CeEEeCCHHHHHHHHHHHhcC--CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           17 NVCYLRDLADANRLVNVMKSC--SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        17 ~v~~l~~~~da~~i~~~l~~~--~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++.+.+.++..++.+.+...  ..++++|+|+|.+|..++..|.+.|.+|+++++.+
T Consensus       207 ~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~  264 (453)
T PRK09496        207 EVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDP  264 (453)
T ss_pred             EEEEEeCHHHHHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            456667777777777766532  35789999999999999999999999999997654

>PRK06849 hypothetical protein; Provisional

Probab=91.06  E-value=0.7  Score=45.10  Aligned_cols=64  Identities=8%  Similarity=0.002  Sum_probs=48.4

Q ss_pred             CCCcEEEECCch-HHHHHHHHHHHCCCcEEEEeeCCccC---------------CccCCHHHHHHHHHHHHhCCCEEEeC
Q 018416           38 SGGNAVVIGGGY-IGMECAASLVINKINVTMVFPEAHCM---------------ARLFTPKIASYYEEYYKSKGVKFVKG  101 (356)
Q Consensus        38 ~~~~vvVvGgG~-iGlE~A~~L~~~G~~Vtlv~~~~~~l---------------~~~~d~~~~~~~~~~l~~~GV~v~~~  101 (356)
                      .+++|+|.|++. +|+++|..|.+.|++|++++..+..+               +..-++...+.+.+..++.+++++..
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP   82 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIP   82 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            468999999886 89999999999999999998875321               22112446677778888888876643

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=91.06  E-value=0.2  Score=49.29  Aligned_cols=44  Identities=30%  Similarity=0.332  Sum_probs=36.7

Q ss_pred             cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      .|.+|+.+.|+.+++|++||++....          .+..|...|..+|+.|+-
T Consensus       438 ri~~d~~~~t~i~gLy~aGdGAG~ar----------gI~~Aaa~Gi~~A~~i~~  481 (486)
T COG2509         438 RIKVDEDLSTSIKGLYPAGDGAGLAR----------GIVSAAADGIKAAEGIAR  481 (486)
T ss_pred             eEeecccceeeecceEEccccccccc----------hhHHHhhhhHHHHHHHHH
Confidence            57899999999999999999998753          356677888888888764

>TIGR00936 ahcY adenosylhomocysteinase

Probab=91.05  E-value=0.32  Score=47.74  Aligned_cols=35  Identities=23%  Similarity=0.196  Sum_probs=32.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+++|+|+|.|.+|.-+|..++..|.+|+++++.+
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            68999999999999999999999999999998654

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=90.91  E-value=0.26  Score=49.97  Aligned_cols=39  Identities=23%  Similarity=0.171  Sum_probs=34.8

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      -++|.|||+|..|..+|..|++.|++|+++++.+..+.+
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~   45 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAA   45 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence            478999999999999999999999999999988765443

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=90.87  E-value=0.34  Score=48.22  Aligned_cols=57  Identities=28%  Similarity=0.307  Sum_probs=41.8

Q ss_pred             ccCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCCC
Q 018416          151 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       151 ~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      .-|+|.||.+.|||.|++||||.|+...  +.|-.+.. ...-.+.--|..+|++|.+..
T Consensus       340 ~mGGI~vD~~GrTsi~gLYAiGEvA~TG--lHGANRLASNSLLE~vV~g~~aA~~i~~~~  397 (518)
T COG0029         340 TMGGIAVDANGRTSIPGLYAIGEVACTG--LHGANRLASNSLLECLVFGKRAAEDIAGRL  397 (518)
T ss_pred             ecccEEECCCCcccCcccEEeeeecccc--cccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence            3589999999999999999999998743  22332221 233466778888999998753

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=90.85  E-value=0.52  Score=39.30  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=30.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCC-CcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~   72 (356)
                      ++++++|+|+|.+|..++..|.+.| .+|+++.+.+
T Consensus        18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            4689999999999999999999996 7888887653

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=90.84  E-value=0.25  Score=52.41  Aligned_cols=38  Identities=18%  Similarity=0.249  Sum_probs=34.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      ++|.|||+|..|..+|..++..|++|+++++.+.-+.+
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~  373 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDR  373 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHH
Confidence            67999999999999999999999999999988765443

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=90.82  E-value=0.39  Score=42.88  Aligned_cols=34  Identities=35%  Similarity=0.584  Sum_probs=31.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .+++|+|||||-.|..=|..|.+.|.+|+++.+.
T Consensus        11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~   44 (210)
T COG1648          11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE   44 (210)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence            6899999999999999999999999999999654

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.76  E-value=0.3  Score=51.09  Aligned_cols=50  Identities=16%  Similarity=0.184  Sum_probs=34.3

Q ss_pred             cCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHH
Q 018416          152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAA  204 (356)
Q Consensus       152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~  204 (356)
                      .|+|.||...+|++|++||+|+|+...   +|-.+.- .....+.-.|+.|+..
T Consensus       406 ~GGi~vd~~~~T~i~GLyAaGE~~~g~---HGanRL~~nsL~e~lv~G~~ag~~  456 (640)
T PRK07573        406 MGGLWVDYNLMSTIPGLFVIGEANFSD---HGANRLGASALMQGLADGYFVLPY  456 (640)
T ss_pred             cCCEEECCCCccccCCEEECccccccC---CCcccccchhHHHHHHHHHHHhHH
Confidence            478999999999999999999997543   2332221 1234566667766543

>TIGR00518 alaDH alanine dehydrogenase

Probab=90.69  E-value=0.33  Score=47.26  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=31.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++++++|+|+|.+|..++..+.++|.+|+++++.+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            56789999999999999999999999999998754

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=90.68  E-value=1.2  Score=40.39  Aligned_cols=34  Identities=26%  Similarity=0.286  Sum_probs=30.5

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .+|+++|.|+ |.+|..+|..|.+.|.+|.++.|.
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~   43 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD   43 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence            5789999985 999999999999999999988764

>PLN02815 L-aspartate oxidase

Probab=90.65  E-value=0.33  Score=50.28  Aligned_cols=54  Identities=26%  Similarity=0.335  Sum_probs=38.1

Q ss_pred             cCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018416          152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  207 (356)
                      -|+|.+|...||++|++||+|+|+...  ++|..+.. .....+.-.|+.|+.++..
T Consensus       377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G--~hGanrl~gnsl~e~lvfGr~Ag~~aa~  431 (594)
T PLN02815        377 CGGVRTGLQGETNVQGLYAAGEVACTG--LHGANRLASNSLLEALVFARRAVQPSID  431 (594)
T ss_pred             CCCeeECCCCceecCCEEecccccccC--CCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999997421  12222211 2345677788888888753

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=90.62  E-value=0.45  Score=42.09  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=31.5

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ..+++++|+|.|.+|.-+|..|.+.|.+|++.++.
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            36789999999999999999999999999987654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK02106 choline dehydrogenase; Validated

Probab=90.60  E-value=0.31  Score=50.09  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=30.9

Q ss_pred             cEEEECCchHHHHHHHHHHH-CCCcEEEEeeCCc
Q 018416           41 NAVVIGGGYIGMECAASLVI-NKINVTMVFPEAH   73 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~-~G~~Vtlv~~~~~   73 (356)
                      .++|||+|..|+-+|..|++ .|.+|.++|+++.
T Consensus         7 D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          7 DYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            69999999999999999999 7999999999953

>TIGR02462 pyranose_ox pyranose oxidase

Probab=90.59  E-value=0.35  Score=49.40  Aligned_cols=34  Identities=29%  Similarity=0.267  Sum_probs=31.2

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      .|+|||+|+.|+-+|..|++.|.+|.++|++...
T Consensus         2 dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~   35 (544)
T TIGR02462         2 DVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAAD   35 (544)
T ss_pred             cEEEECCchHHHHHHHHHHHCCCeEEEEeccCcc
Confidence            5899999999999999999999999999998543

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=90.59  E-value=0.71  Score=46.64  Aligned_cols=56  Identities=25%  Similarity=0.318  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                      ..+.+.+.+.++++|++|+++++|++|.. ++|+.+.+...+|+.+++|.||.....
T Consensus       224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence            45778889999999999999999999987 566556777777778999999998776

>PRK07233 hypothetical protein; Provisional

Probab=90.59  E-value=1  Score=44.15  Aligned_cols=55  Identities=24%  Similarity=0.270  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                      ..+.+.+.+.+++.|++++++++|++|+.+ ++.+..+ ..+++++++|.||++++.
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~-~~~~~~~~ad~vI~a~p~  252 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGV-EVDGEEEDFDAVISTAPP  252 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEE-EeCCceEECCEEEECCCH
Confidence            457788888899999999999999999863 4444333 356778999999999974

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=90.58  E-value=0.41  Score=40.94  Aligned_cols=32  Identities=25%  Similarity=0.425  Sum_probs=29.5

Q ss_pred             EEEECC-chHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           42 AVVIGG-GYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        42 vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      |+|+|+ |++|-.++..|.++|.+|+.+.|.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~   33 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS   33 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence            689996 99999999999999999999999865

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
1q1r_A	431	Crystal Structure Of Putidaredoxin Reductase From P		1e-28
3lb8_A	436	Crystal Structure Of The Covalent Putidaredoxin Red		3e-28
3fg2_P	404	Crystal Structure Of Ferredoxin Reductase For The C		2e-27
3lxd_A	415	Crystal Structure Of Ferredoxin Reductase Arr From		3e-23
2gr3_A	408	Crystal Structure Of Ferredoxin Reductase, Bpha4 (O		1e-16
1d7y_A	408	Crystal Structure Of Nadh-Dependent Ferredoxin Redu		2e-16
3gd4_A	511	Crystal Structure Of The Reduced, Nad-Bound Form Of		4e-16
3gd3_A	535	Crystal Structure Of A Naturally Folded Murine Apop		5e-16
1gv4_A	528	Murine Apoptosis-Inducing Factor (Aif) Length = 528		5e-16
1m6i_A	493	Crystal Structure Of Apoptosis Inducing Factor (Aif		3e-15
4fdc_B	514	Crystal Structure Of The E493v Mutant Of Human Apop		4e-15
3ntd_A	565	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		1e-14
1nhs_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		2e-14
1joa_A	447	Nadh Peroxidase With Cysteine-Sulfenic Acid Length		2e-14
1nhp_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		2e-14
1nhq_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		2e-14
1nhr_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		2e-14
3nt6_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		8e-14
3nta_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		1e-13
1f8w_A	447	Crystal Structure Of Nadh Peroxidase Mutant: R303m		2e-13
2cdu_A	452	The Crystal Structure Of Water-Forming Nad(P)h Oxid		2e-13
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		3e-13
3cgc_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		8e-13
2v3a_A	384	Crystal Structure Of Rubredoxin Reductase From Pseu		9e-13
3cgb_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		2e-11
2bc1_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		4e-11
2bc0_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		4e-11
1mo9_A	523	Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct		5e-09
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		6e-09
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		3e-07
1lvl_A	458	The Refined Structure Of Pseudomonas Putida Lipoami		3e-07
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		3e-07
3rnm_A	495	The Crystal Structure Of The Subunit Binding Of Hum		1e-06
1zmc_A	474	Crystal Structure Of Human Dihydrolipoamide Dehydro		1e-06
1zy8_A	474	The Crystal Structure Of Dihydrolipoamide Dehydroge		1e-06
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		2e-06
4eqx_A	437	Crystal Structure Of The C43s Mutant Of Staphylococ		5e-06
4eqw_A	437	Crystal Structure Of The Y361f, Y419f Mutant Of Sta		5e-06
1yqz_A	438	Structure Of Coenzyme A-Disulfide Reductase From St		5e-06
4eqs_A	437	Crystal Structure Of The Y419f Mutant Of Staphyloco		6e-06
4eqr_A	437	Crystal Structure Of The Y361f Mutant Of Staphyloco		6e-06
4emw_A	436	Crystal Structure Of Staphylococcus Aureus Bound Wi		6e-06
4em3_A	437	Crystal Structure Of Staphylococcus Aureus Bound Wi		6e-06
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		6e-06
3dh9_A	482	Crystal Structure Of Drosophila Thioredoxin Reducta		8e-06
3dgz_A	488	Crystal Structure Of Mouse Mitochondrial Thioredoxi		8e-06
2nvk_X	488	Crystal Structure Of Thioredoxin Reductase From Dro		8e-06
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		9e-06
3dgh_A	483	Crystal Structure Of Drosophila Thioredoxin Reducta		9e-06
1zdl_A	517	Crystal Structure Of Mouse Thioredoxin Reductase Ty		9e-06
2v6o_A	596	Structure Of Schistosoma Mansoni Thioredoxin-Glutat		3e-05
2x8c_A	598	Thioredoxin Glutathione Reductase From Schistosoma		3e-05
3h4k_A	598	Crystal Structure Of The Wild Type Thioredoxin Glut		3e-05
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		4e-05
3kd9_A	449	Crystal Structure Of Pyridine Nucleotide Disulfide		1e-04
3o0h_A	484	Crystal Structure Of Glutathione Reductase From Bar		1e-04
3ab1_A	360	Crystal Structure Of Ferredoxin Nadp+ Oxidoreductas		1e-04
1cl0_A	320	Crystal Structure Of Reduced Thioredoxin Reductase		3e-04
1tdf_A	316	Crystal Structure Of Escherichia Coli Thioredoxin R		3e-04
1tde_A	316	Crystal Structure Of Escherichia Coli Thioredoxin R		3e-04
1trb_A	320	Convergent Evolution Of Similar Function In Two Str		3e-04
1f6m_A	320	Crystal Structure Of A Complex Between Thioredoxin		3e-04
1dxl_A	470	Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy		4e-04
1hyu_A	521	Crystal Structure Of Intact Ahpf Length = 521		7e-04

>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 150/301 (49%), Gaps = 7/301 (2%)
Query: 15  AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74
           A N  YLR L DA  +   +   +    VVIGGGYIG+E AA+ +   ++VT++   A  
Sbjct: 127 ANNFRYLRTLEDAECIRRQL--IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV 184
Query: 75  MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVV 133
           + R+  P ++++YE  ++  GV    GT +  F++ ++  KV AV   DG RLP D+V+ 
Sbjct: 185 LERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIA 244
Query: 134 GIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 193
           GIG+ PN  L          GI +   +Q+S+  + AVGD A F  +L     R+E V +
Sbjct: 245 GIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPN 304
Query: 194 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFG 251
           A + A+  +AAI+   K  + +  P+F+S  + +  +  G + G   ++  G+ +   F 
Sbjct: 305 ALEQARK-IAAIL-CGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFS 362
Query: 252 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPST 311
            +++   R++         E  ++    T   PV  +L   E+  L   +A ++  L S 
Sbjct: 363 VFYLQGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIAAAKAELSSA 422
Query: 312 P 312
           P
Sbjct: 423 P 423

>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436

Iteration: 1
 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 152/308 (49%), Gaps = 7/308 (2%)
Query: 15  AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74
           A N  YLR L DA  +   +   +    VVIGGGYIG+E AA+ +   ++VT++   A  
Sbjct: 126 ANNFRYLRTLEDAECIRRQL--IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV 183
Query: 75  MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVV 133
           + R+  P ++++YE  ++  GV    GT +  F++ ++  KV AV   DG RLP D+V+ 
Sbjct: 184 LERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIA 243
Query: 134 GIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 193
           GIG+ PN  L          GI +   +Q+S+  + AVGD A F  +L     R+E V +
Sbjct: 244 GIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPN 303
Query: 194 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFG 251
           A + A+  +AAI+   K  + +  P+F+S  + +  +  G + G   ++  G+ +   F 
Sbjct: 304 ALEQARK-IAAIL-CGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFS 361
Query: 252 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPST 311
            +++   R++         E  ++    T   PV  +L   E+  L   +A ++  L S 
Sbjct: 362 VFYLQGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIAAAKAELSSA 421
Query: 312 PVDGKTVP 319
             +  + P
Sbjct: 422 KAELSSAP 429

>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 126/248 (50%), Gaps = 7/248 (2%)
Query: 17  NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 76
           +V YLR L ++  L   M      + VVIG G+IG+E AA+     + V +V      MA
Sbjct: 122 DVLYLRTLDESEVLRQRMPDKK--HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA 179
Query: 77  RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 136
           R+ TP+I+SY+ + +   G++   G   +    + + +V  V L DGN LP D+VVVG+G
Sbjct: 180 RVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVVLSDGNTLPCDLVVVGVG 238
Query: 137 IRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 196
           + PN  +          GI V  +L +S+  + A+GD A F     GET R+E V +A  
Sbjct: 239 VIPNVEIAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATD 298
Query: 197 SAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYW 254
            A+  VAA +  D    +D  P+F+S       Q  G   G  +VV  G+ +  +F A+ 
Sbjct: 299 QAR-CVAARLTGD-AKPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFSAFC 356
Query: 255 VNKGRLVG 262
              G+L+G
Sbjct: 357 YKAGKLIG 364

>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 123/253 (48%), Gaps = 7/253 (2%)
Query: 12  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
           G+D   V  +R   DA+RL+  + +    NAVVIGGGYIG+E AA L    +NVT++   
Sbjct: 126 GADLAGVHAVRTKEDADRLMAELDA-GAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEAL 184
Query: 72  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
              +AR+    ++ +Y+  +++ GV    G  +   + D   KV  V ++DG+ +P D+V
Sbjct: 185 PRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGT-KVTGVRMQDGSVIPADIV 243
Query: 132 VVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL-GETRRLEH 190
           +VGIGI P              G+ V    ++S + VYA+GD AA       G   RLE 
Sbjct: 244 IVGIGIVPCVGALISAGASGGNGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLES 303
Query: 191 VDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE--VVHYGNFSGT 248
           V +A   A  A   I        +   P+F+S  + L  Q  G + G    V  G+ +  
Sbjct: 304 VQNANDMATAAAKDIC--GAPVPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDPATR 361
Query: 249 TFGAYWVNKGRLV 261
           +F   ++  G++V
Sbjct: 362 SFSVVYLKGGKVV 374

>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 14/250 (5%)
Query: 18  VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 77
           V  LR L DA R+   ++  S    +++GGG IG+E AA+     ++V++V  +   M+R
Sbjct: 126 VHTLRTLEDARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR 183
Query: 78  LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGNRLPTDMVVVGIG 136
                +A +   Y+ ++GV          F+    G V  V L  DG R+  DMVVVGIG
Sbjct: 184 AAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 236
Query: 137 IRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 196
           +  N +L          GI V    +++   VYA+GDV      L G   R+E   +A+ 
Sbjct: 237 VLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQN 296
Query: 197 SAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFS--GTTFGAY 253
                   +++P     +  LP+++S    L  Q  G   G E +  G  S     F   
Sbjct: 297 QGIAVARHLVDP-TAPGYAELPWYFSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLI 355
Query: 254 WVNKGRLVGS 263
            + KGR+VG+
Sbjct: 356 ELQKGRIVGA 365

>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 14/250 (5%)
Query: 18  VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 77
           V  LR L DA R+   ++  S    +++GGG IG+E AA+     ++V++V  +   M+R
Sbjct: 126 VHTLRTLEDARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR 183
Query: 78  LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGNRLPTDMVVVGIG 136
                +A +   Y+ ++GV          F+    G V  V L  DG R+  DMVVVGIG
Sbjct: 184 AAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 236
Query: 137 IRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 196
           +  N +L          GI V    +++   VYA+GDV      L G   R+E   +A+ 
Sbjct: 237 VLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQN 296
Query: 197 SAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFS--GTTFGAY 253
                   +++P     +  LP+++S    L  Q  G   G E +  G  S     F   
Sbjct: 297 QGIAVARHLVDP-TAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLI 355
Query: 254 WVNKGRLVGS 263
            + KGR+VG+
Sbjct: 356 ELQKGRIVGA 365

>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 24/241 (9%)
Query: 21  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTMVFPEAHCMA 76
            R + D   L  + +     +  VIGGG++G E A +L      + I V  +FPE   M 
Sbjct: 182 FRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQLFPEKGNMG 239
Query: 77  RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 136
           ++    ++++  E  K +GVK +   ++ S  V S G+++ + L+DG ++ TD +V  +G
Sbjct: 240 KILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVETDHIVTAVG 297
Query: 137 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 193
           + PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG  RR+EH D 
Sbjct: 298 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 355
Query: 194 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFSGTTFGA 252
           A  S + A   +    K       P+++  +F   W   G +VG E +   + S  T G 
Sbjct: 356 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLVDSSLPTVGV 405
Query: 253 Y 253
           +
Sbjct: 406 F 406

>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 24/241 (9%)
Query: 21  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTMVFPEAHCMA 76
            R + D   L  + +     +  VIGGG++G E A +L      + I V  +FPE   M 
Sbjct: 206 FRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQLFPEKGNMG 263
Query: 77  RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 136
           ++    ++++  E  K +GVK +   ++ S  V S G+++ + L+DG ++ TD +V  +G
Sbjct: 264 KILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVETDHIVTAVG 321
Query: 137 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 193
           + PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG  RR+EH D 
Sbjct: 322 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 379
Query: 194 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFSGTTFGA 252
           A  S + A   +    K       P+++  +F   W   G +VG E +   + S  T G 
Sbjct: 380 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLVDSSLPTVGV 429
Query: 253 Y 253
           +
Sbjct: 430 F 430

>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 24/241 (9%)
Query: 21  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTMVFPEAHCMA 76
            R + D   L  + +     +  VIGGG++G E A +L      + I V  +FPE   M 
Sbjct: 201 FRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQLFPEKGNMG 258
Query: 77  RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 136
           ++    ++++  E  K +GVK +   ++ S  V S G+++ + L+DG ++ TD +V  +G
Sbjct: 259 KILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVETDHIVTAVG 316
Query: 137 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 193
           + PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG  RR+EH D 
Sbjct: 317 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 374
Query: 194 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFSGTTFGA 252
           A  S + A   +    K       P+++  +F   W   G +VG E +   + S  T G 
Sbjct: 375 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLVDSSLPTVGV 424
Query: 253 Y 253
           +
Sbjct: 425 F 425

>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 117/241 (48%), Gaps = 24/241 (9%)
Query: 21  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK----INVTMVFPEAHCMA 76
            R + D   L  + +     +  +IGGG++G E A +L          V  +FPE   M 
Sbjct: 164 FRKIGDFRSLEKISREVK--SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG 221
Query: 77  RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 136
           ++    ++++  E  + +GVK +   ++ S  V S+GK++ + L+DG ++ TD +V  +G
Sbjct: 222 KILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVETDHIVAAVG 279
Query: 137 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 193
           + PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG  RR+EH D 
Sbjct: 280 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 337
Query: 194 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFSGTTFGA 252
           A  S + A   +    K       P+++  +F   W   G +VG E +   + S  T G 
Sbjct: 338 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLVDSSLPTVGV 387
Query: 253 Y 253
           +
Sbjct: 388 F 388

>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 23/226 (10%)
Query: 21  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK----INVTMVFPEAHCMA 76
            R + D   L  + +     +  +IGGG++G E A +L          V  +FPE   M 
Sbjct: 182 FRKIGDFRSLEKISREVK--SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG 239
Query: 77  RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 136
           ++    ++++  E  + +GVK +   ++ S  V S+GK++ + L+DG ++ TD +V  +G
Sbjct: 240 KILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVETDHIVAAVG 297
Query: 137 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 193
           + PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG  RR+EH D 
Sbjct: 298 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 355
Query: 194 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 239
           A  S + A   +    K       P+++  +F   W   G +VG V
Sbjct: 356 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYV 391

>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 26/186 (13%)
Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           + G D      LR++ D +R++  ++  +  +A V+GGG+IG+E   SL    I  T++ 
Sbjct: 122 IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL- 180
Query: 70  PEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS--SFDV------DSNGKVVA- 117
                  ++ TP   ++A +  +  + +GV    GT LS  S+ V      D+ G+  A 
Sbjct: 181 ---ELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAH 237
Query: 118 --------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSS 167
                   + L +G  L TD++++ IG+RP T L    G    E GGIKV   +Q+S+ +
Sbjct: 238 QHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPA 297
Query: 168 VYAVGD 173
           +YAVGD
Sbjct: 298 IYAVGD 303

>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 7   EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 66
           E  + G D +N+  +R    A +L          N VVIG GYIG+E A +       VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 67  MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 126
           ++      +      +      E  ++  +    G  +  ++ D  G+V  V + D N  
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 127 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 185
             D+VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD            
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 186 RRLEHVDSARKSAKHAVAAIMEPDK 210
             +    +ARK  + AV  + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318

>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 7   EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 66
           E  + G D +N+  +R    A +L          N VVIG GYIG+E A +       VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 67  MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 126
           ++      +      +      E  ++  +    G  +  ++ D  G+V  V + D N  
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 127 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 185
             D+VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD            
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 186 RRLEHVDSARKSAKHAVAAIMEPDK 210
             +    +ARK  + AV  + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318

>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 7   EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 66
           E  + G D +N+  +R    A +L          N VVIG GYIG+E A +       VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 67  MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 126
           ++      +      +      E  ++  +    G  +  ++ D  G+V  V + D N  
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 127 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 185
             D+VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD            
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 186 RRLEHVDSARKSAKHAVAAIMEPDK 210
             +    +ARK  + AV  + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318

>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 7   EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 66
           E  + G D +N+  +R    A +L          N VVIG GYIG+E A +       VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 67  MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 126
           ++      +      +      E  ++  +    G  +  ++ D  G+V  V + D N  
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 127 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 185
             D+VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD            
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 186 RRLEHVDSARKSAKHAVAAIMEPDK 210
             +    +ARK  + AV  + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318

>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 7   EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 66
           E  + G D +N+  +R    A +L          N VVIG GYIG+E A +       VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 67  MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 126
           ++      +      +      E  ++  +    G  +  ++ D  G+V  V + D N  
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 127 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 185
             D+VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD            
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 186 RRLEHVDSARKSAKHAVAAIMEPDK 210
             +    +ARK  + AV  + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318

>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 26/186 (13%)
Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           + G D      LR++ D +R++  ++  +  +A V+GGG+IG+E   SL    I  T++ 
Sbjct: 122 IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL- 180
Query: 70  PEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS--SFDV------DSNGKVVA- 117
                  ++ TP   + A +  +  + +GV    GT LS  S+ V      D+ G+  A 
Sbjct: 181 ---ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAH 237
Query: 118 --------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSS 167
                   + L +G  L TD+++  IG+RP T L    G    E GGIKV    Q+S+ +
Sbjct: 238 QHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPA 297
Query: 168 VYAVGD 173
           +YAVGD
Sbjct: 298 IYAVGD 303

>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 26/186 (13%)
Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           + G D      LR++ D +R++  ++  +  +A V+GGG+IG+E   SL    I  T++ 
Sbjct: 122 IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL- 180
Query: 70  PEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS--SFDV------DSNGKVVA- 117
                  ++ TP   + A +  +  + +GV    GT LS  S+ V      D+ G+  A 
Sbjct: 181 ---ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAH 237
Query: 118 --------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSS 167
                   + L +G  L TD+++  IG+RP T L    G    E GGIKV    Q+S+ +
Sbjct: 238 QHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPA 297
Query: 168 VYAVGD 173
           +YAVGD
Sbjct: 298 IYAVGD 303

>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 4/205 (1%)
Query: 7   EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 66
           E  + G D +N+  +R    A +L          N VVIG GYIG+E A +       VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 67  MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 126
           ++      +      +      E  ++  +    G  +  ++ D  G+V  V + D N  
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 127 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 185
             D+VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD            
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 186 RRLEHVDSARKSAKHAVAAIMEPDK 210
             +    +A K  + AV  + EP K
Sbjct: 294 VNIALATNAMKQGRFAVKNLEEPVK 318

>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 5/168 (2%)
Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           + G D+  V   ++  DA +L    ++       +IG GYIG E A +      NV ++ 
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFE--EAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLID 179
Query: 70  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 129
                + + F  +      + Y++ GV  V G+ +++F+ + + +++   L DG  + +D
Sbjct: 180 GHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEIITKTL-DGKEIKSD 237
Query: 130 MVVVGIGIRPNTSLFEGQLT-LEKGGIKVTGRLQSSNSSVYAVGDVAA 176
           + ++ IG RPNT L +G++  L+ G I     + SSN  ++A GD AA
Sbjct: 238 IAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAA 285

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 13  SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72
            +A+ +  LR++ D +R+   +      +A VIGGG+IG+E   +L    I VT+V   A
Sbjct: 161 EEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEXVENLRERGIEVTLV-EXA 219
Query: 73  HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 132
           + +      + A+Y  E+ K+  V+ V    + +   + NG V  V L+ G+ + TD ++
Sbjct: 220 NQVXPPIDYEXAAYVHEHXKNHDVELVFEDGVDAL--EENGAV--VRLKSGSVIQTDXLI 275
Query: 133 VGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGD 173
           + IG++P +SL +G  L L  +G IKV  + Q+S+  +YA+GD
Sbjct: 276 LAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGD 318

>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 6/169 (3%)
Query: 11  SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 70
            G D + V  L+ + DA R++  +++    +  +IGGG IG+E A + V     V M+  
Sbjct: 158 EGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIER 217
Query: 71  EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 130
             H +  ++   +A Y  +      ++ +    + +F    N +V AV    G     D+
Sbjct: 218 NDH-IGTIYDGDMAEYIYKEADKHHIEILTNENVKAF--KGNERVEAVETDKGT-YKADL 273
Query: 131 VVVGIGIRPNTSLFEGQ--LTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 177
           V+V +G++PNT   EG    T  KG I+V   +Q++   VYA GD A  
Sbjct: 274 VLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATH 322

>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 14  DAENVCY-LRDLADANRLVNVMKSCSGGNAVVI-GGGYIGMECAASLVINKINVTMVFPE 71
           DA++  Y + DL D  R     ++ +G   V++ G G IG E A  L      + +V P 
Sbjct: 121 DAQDALYPINDLEDYARF---RQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPC 177
Query: 72  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
              M  L  P  A   +   +  GV+F  G VL+S      G+ +  +L DG  +P D+V
Sbjct: 178 EQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLK--KAGEGLEAHLSDGEVIPCDLV 235
Query: 132 VVGIGIRPNTSL-FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVA 175
           V  +G+RP T L F   L + + GI V   L++S++++YA+GD A
Sbjct: 236 VSAVGLRPRTELAFAAGLAVNR-GIVVDRSLRTSHANIYALGDCA 279

>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 11  SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 70
            G D + V  L+ + DA R++  +++    +  +IGGG IG+E A + V     V  +  
Sbjct: 158 EGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXIER 217
Query: 71  EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 130
             H +  ++    A Y  +      ++ +    + +F    N +V AV    G     D+
Sbjct: 218 NDH-IGTIYDGDXAEYIYKEADKHHIEILTNENVKAF--KGNERVEAVETDKGT-YKADL 273
Query: 131 VVVGIGIRPNTSLFEGQ--LTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 177
           V+V +G++PNT   EG    T  KG I+V    Q++   VYA GD A  
Sbjct: 274 VLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGDCATH 322

>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 4/163 (2%)
Query: 16  ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 75
           EN+ +++   ++  ++  +++       V+G GYIG+E A +       V ++     C+
Sbjct: 171 ENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCL 230
Query: 76  ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 135
           A  +   +     +  +  G++   G  +   +V  NGKV  + + D N    DMV++ +
Sbjct: 231 AGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKNEYDVDMVILAV 287
Query: 136 GIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAF 177
           G RPNT+L  G++ L   G   V  R ++S   VYA+GD A  
Sbjct: 288 GFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATI 330

>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 4/163 (2%)
Query: 16  ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 75
           EN+ +++   ++  ++  +++       V+G GYIG+E A +       V ++     C+
Sbjct: 171 ENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCL 230
Query: 76  ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 135
           A  +   +     +  +  G++   G  +   +V  NGKV  + + D N    DMV++ +
Sbjct: 231 AGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKNEYDVDMVILAV 287
Query: 136 GIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAF 177
           G RPNT+L  G++ L   G   V  R ++S   VYA+GD A  
Sbjct: 288 GFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATI 330

>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 23/220 (10%)
Query: 26  DANRLVNVMKSCSGGNAVVIGGGYIGMECAASL-VINKINVTMVFPEAHCMARLFTPKIA 84
           D   LV  +    G   VV+GG    +E         +  V +V  E   +  +   +  
Sbjct: 201 DHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP--LKLIKDNETR 258
Query: 85  SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPNT 141
           +Y  +  K +G++ + G+ ++  + D+NG+V AV     N   R+ TD V +G+G +P +
Sbjct: 259 AYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS 318
Query: 142 SLFEGQLTLE---KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA 198
           +     L L+   KG + V   LQ+S  +VYAVGD+   P+++            ARKS 
Sbjct: 319 AELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMF----------KARKSG 368
Query: 199 KHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE 238
            +A   +M     +K  Y P  Y       ++     +GE
Sbjct: 369 CYAARNVM----GEKISYTPKNYPDFLHTHYEVSFLGMGE 404

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 5/178 (2%)
Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV-INKINVTMV 68
           + G D   V  + +L +A  + + + +     AV++GGG+IG+E A SL  +  I+ T+V
Sbjct: 130 VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVV 189
Query: 69  FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT 128
                 M    +  ++       +   V    G  +   +   NGKV  V + D   L  
Sbjct: 190 ELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLDA 247
Query: 129 DMVVVGIGIRPNTSLF-EGQLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 184
           D+V++  G+ PNT L  +  L L+ +G I V  R+++S+  ++A GD    P  + G+
Sbjct: 248 DLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGK 305

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 99/232 (42%), Gaps = 9/232 (3%)
Query: 4   KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI 63
           +     L GS    V  LR   D   L +   S +    +++GGG IG E A +     +
Sbjct: 110 RARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSAT--RLLIVGGGLIGCEVATTARKLGL 167
Query: 64  NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG 123
           +VT++      + R+   +I ++        GV+   GT +  F     G++  V   DG
Sbjct: 168 SVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFS--GEGQLEQVMASDG 225
Query: 124 NRLPTDMVVVGIGIRPNTSLF-EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 182
                D  ++ +G  P   L  +  L  ++G + V     +    V+AVGDVA++PL+  
Sbjct: 226 RSFVADSALICVGAEPADQLARQAGLACDRG-VIVDHCGATLAKGVFAVGDVASWPLR-A 283
Query: 183 GETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD 234
           G  R LE   +A++ A    AAI+   K      LP  ++ +     Q  GD
Sbjct: 284 GGRRSLETYMNAQRQAAAVAAAIL--GKNVSAPQLPVSWTEIAGHRMQMAGD 333

>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 8/141 (5%)
Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
           VV+GGGYIG+E   +       V++V      +   +  ++ +   E  K  G+    G 
Sbjct: 175 VVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGH 233
Query: 103 VLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIKVT 158
            +  ++   NG ++A + + G  RL  D V+V +G RP T  F  +   L +    I + 
Sbjct: 234 SVEGYE---NGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAID 290
Query: 159 GRLQSSNSSVYAVGDVAAFPL 179
            R Q+S  +V+A+GDVA  P+
Sbjct: 291 ERCQTSMHNVWAIGDVAGEPM 311

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
           VVIGGGYIG+E   +       VT++      ++  F  ++A+  ++  K KGV+ V   
Sbjct: 174 VVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNA 232
Query: 103 VLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR- 160
           +    +   +G  V      +   +  D V+V +G RPNT     +L LE+ GIK+T R 
Sbjct: 233 LAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD----ELGLEQIGIKMTNRG 288
Query: 161 -------LQSSNSSVYAVGDVAAFP 178
                   ++S  +++A+GD+   P
Sbjct: 289 LIEVDQQCRTSVPNIFAIGDIVPGP 313

>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
           VVIG G IG+E  +       +VT V    H        +I+  ++   + +G KF   T
Sbjct: 203 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 262
Query: 103 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 154
            ++     S+GK+ V++    G +   +  D+++V IG RP   N  L E  + L+ +G 
Sbjct: 263 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 322
Query: 155 IKVTGRLQSSNSSVYAVGDVAAFPL 179
           I V  R Q+   ++YA+GDV A P+
Sbjct: 323 IPVNTRFQTKIPNIYAIGDVVAGPM 347

>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
           VVIG G IG+E  +       +VT V    H        +I+  ++   + +G KF   T
Sbjct: 182 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 241
Query: 103 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 154
            ++     S+GK+ V++    G +   +  D+++V IG RP   N  L E  + L+ +G 
Sbjct: 242 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 301
Query: 155 IKVTGRLQSSNSSVYAVGDVAAFPL 179
           I V  R Q+   ++YA+GDV A P+
Sbjct: 302 IPVNTRFQTKIPNIYAIGDVVAGPM 326

>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
           VVIG G IG+E  +       +VT V    H        +I+  ++   + +G KF   T
Sbjct: 182 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 241
Query: 103 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 154
            ++     S+GK+ V++    G +   +  D+++V IG RP   N  L E  + L+ +G 
Sbjct: 242 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 301
Query: 155 IKVTGRLQSSNSSVYAVGDVAAFPL 179
           I V  R Q+   ++YA+GDV A P+
Sbjct: 302 IPVNTRFQTKIPNIYAIGDVVAGPM 326

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP---KIASYYEEYYKSKGVKFV 99
           +V+GGG IG+E    +V +++   ++  E   M R+      +++   E  +K +G+   
Sbjct: 171 IVVGGGVIGLEL--GVVWHRLGAEVIVLE--YMDRILPTMDLEVSRAAERVFKKQGLTIR 226
Query: 100 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 155
            G  +++   ++ G    V L  G  L  D V+V +G RP T        G  T E+G I
Sbjct: 227 TGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRI 284
Query: 156 KVTGRLQSSNSSVYAVGDVAAFPL 179
            V   L++    +YA+GDV   P+
Sbjct: 285 PVDEHLRTRVPHIYAIGDVVRGPM 308

>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 21  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 80
           LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   +  + +L  
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 81  PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140
             +     +    + + +     +++     NG    +  + G     DM++ G+G  PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 141 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 192
           +   E   + L+ KG I V  + +++  ++YA+GD+A         T    HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286

>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 21  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 80
           LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   +  + +L  
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 81  PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140
             +     +    + + +     +++     NG    +  + G     DM++ G+G  PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 141 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 192
           +   E   + L+ KG I V  + +++  ++YA+GD+A         T    HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286

>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 21  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 80
           LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   +  + +L  
Sbjct: 130 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 188
Query: 81  PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140
             +     +    + + +     +++     NG    +  + G     DM++ G+G  PN
Sbjct: 189 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 242
Query: 141 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 192
           +   E   + L+ KG I V  + +++  ++YA+GD+A         T    HVD
Sbjct: 243 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 287

>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 21  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 80
           LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   +  + +L  
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 81  PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140
             +     +    + + +     +++     NG    +  + G     DM++ G+G  PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 141 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 192
           +   E   + L+ KG I V  + +++  ++YA+GD+A         T    HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286

>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 21  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 80
           LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   +  + +L  
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 81  PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140
             +     +    + + +     +++     NG    +  + G     DM++ G+G  PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 141 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 192
           +   E   + L+ KG I V  + +++  ++YA+GD+A         T    HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286

>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 21  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 80
           LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   +  + +L  
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 81  PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140
             +     +    + + +     +++     NG    +  + G     DM++ G+G  PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 141 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 192
           +   E   + L+ KG I V  + +++  ++YA+GD+A         T    HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286

>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 21  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 80
           LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   +  + +L  
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 81  PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140
             +     +    + + +     +++     NG    +  + G     DM++ G+G  PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 141 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 192
           +   E   + L+ KG I V  + +++  ++YA+GD+A         T    HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
           ++ GGGYI +E A       +  T+++     ++R F            + KG++ +   
Sbjct: 174 LIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDXRRGLHAAXEEKGIRILCED 232
Query: 103 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF----EGQLTLEKGGIKVT 158
           ++ S   D++G+ VA   + G  +  D V + +G  PNT+       G  T E G I V 
Sbjct: 233 IIQSVSADADGRRVATTXKHGE-IVADQVXLALGRXPNTNGLGLEAAGVRTNELGAIIVD 291
Query: 159 GRLQSSNSSVYAVGDV 174
              ++S   +YA+GDV
Sbjct: 292 AFSRTSTPGIYALGDV 307

>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type Length = 482

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 99
           G  +V+G GYIG+ECA  L       T++      + R F  ++A       + +G+ F+
Sbjct: 184 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 241
Query: 100 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGIGIR---PNTSLFEGQLTLEK 152
           + TV  S +   +GK++    N+  G       D V+  IG +    + +L    +T++K
Sbjct: 242 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 301
Query: 153 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 195
             I V  +  ++ +++YAVGD          VA    +LL      G T+R+++ D A  
Sbjct: 302 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 361
Query: 196 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 221
                ++A   + E D   +F  D +  F+
Sbjct: 362 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 391

>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 19/151 (12%)
Query: 38  SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 97
           S G  +V+G  Y+ +ECA  L    ++ T++        R F  +++S   E+ +S G +
Sbjct: 184 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS--IPLRGFDQQMSSLVTEHMESHGTQ 241
Query: 98  FVKGTVLSSF-DVDSNGKVVAVNLRDGNRLPT---DMVVVGIGIRPNTSLFEGQLTLEKG 153
           F+KG V S    + +N   V        +  T   D V+  IG  P T      L LEK 
Sbjct: 242 FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRT----LNLEKA 297
Query: 154 GIKVTGRLQ---------SSNSSVYAVGDVA 175
           GI    + Q         +S   +YA+GDVA
Sbjct: 298 GISTNPKNQKIIVDAQEATSVPHIYAIGDVA 328

>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster Length = 488

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 99
           G  +V+G GYIG+ECA  L       T++      + R F  ++A       + +G+ F+
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 245
Query: 100 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGIGIR---PNTSLFEGQLTLEK 152
           + TV  S +   +GK++    N+  G       D V+  IG +    + +L    +T++K
Sbjct: 246 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 305
Query: 153 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 195
             I V  +  ++ +++YAVGD          VA    +LL      G T+R+++ D A  
Sbjct: 306 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 365
Query: 196 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 221
                ++A   + E D   +F  D +  F+
Sbjct: 366 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 395

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 44  VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 103
           +IG GYIG+E A  L      VT+V  E   + + F P +++   E   ++G++      
Sbjct: 171 IIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHAQGIETHLEFA 229
Query: 104 LSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSLFEGQLTLEKGGIKV----- 157
           +++ + D+ G  +    +DG RL   D V+  +G  PNT      L LE  GI+V     
Sbjct: 230 VAALERDAQGTTLVA--QDGTRLEGFDSVIWAVGRAPNTR----DLGLEAAGIEVQSNGM 283
Query: 158 --TGRLQSSN-SSVYAVGDV 174
             T   Q++N   VYA+GD+
Sbjct: 284 VPTDAYQNTNVPGVYALGDI 303

>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation Length = 483

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 99
           G  +V+G GYIG+ECA  L       T++      + R F  ++A       + +G+ F+
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 245
Query: 100 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGIGIR---PNTSLFEGQLTLEK 152
           + TV  S +   +GK++    N+  G       D V+  IG +    + +L    +T++K
Sbjct: 246 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 305
Query: 153 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 195
             I V  +  ++ +++YAVGD          VA    +LL      G T+R+++ D A  
Sbjct: 306 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 365
Query: 196 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 221
                ++A   + E D   +F  D +  F+
Sbjct: 366 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 395

>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 19/151 (12%)
Query: 38  SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 97
           S G  +V+G  Y+ +ECA  L    ++ T++        R F  +++S   E+ +S G +
Sbjct: 210 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI--PLRGFDQQMSSLVTEHMESHGTQ 267
Query: 98  FVKGTVLSSF-DVDSNGKVVAVNLRDGNRLPT---DMVVVGIGIRPNTSLFEGQLTLEKG 153
           F+KG V S    + +N   V        +  T   D V+  IG  P T      L LEK 
Sbjct: 268 FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR----TLNLEKA 323
Query: 154 GIKVTGRLQ---------SSNSSVYAVGDVA 175
           GI    + Q         +S   +YA+GDVA
Sbjct: 324 GISTNPKNQKIIVDAQEATSVPHIYAIGDVA 354

>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 17/152 (11%)
Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 99
           G  +VIG  Y+ +ECA  L     +VT++      + R F  ++A    +Y ++ GVKF 
Sbjct: 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFA 344
Query: 100 KGTV------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ- 147
           K  V      L   D ++N     +V  +  DG +   +   V+  +G  P  S    + 
Sbjct: 345 KLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCET 404
Query: 148 --LTLEKGG-IKVTGRLQSSNSSVYAVGDVAA 176
             + L+K G +  T   Q++ S+VYA+GD+ A
Sbjct: 405 VGVKLDKNGRVVCTDDEQTTVSNVYAIGDINA 436

>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 17/152 (11%)
Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 99
           G  +VIG  Y+ +ECA  L     +VT++      + R F  ++A    +Y ++ GVKF 
Sbjct: 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFA 344
Query: 100 KGTV------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ- 147
           K  V      L   D ++N     +V  +  DG +   +   V+  +G  P  S    + 
Sbjct: 345 KLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCET 404
Query: 148 --LTLEKGG-IKVTGRLQSSNSSVYAVGDVAA 176
             + L+K G +  T   Q++ S+VYA+GD+ A
Sbjct: 405 VGVKLDKNGRVVCTDDEQTTVSNVYAIGDINA 436

>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 17/152 (11%)
Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 99
           G  +VIG  Y+ +ECA  L     +VT++      + R F  ++A    +Y ++ GVKF 
Sbjct: 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFA 344
Query: 100 KGTV------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ- 147
           K  V      L   D ++N     +V  +  DG +   +   V+  +G  P  S    + 
Sbjct: 345 KLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCET 404
Query: 148 --LTLEKGG-IKVTGRLQSSNSSVYAVGDVAA 176
             + L+K G +  T   Q++ S+VYA+GD+ A
Sbjct: 405 VGVKLDKNGRVVCTDDEQTTVSNVYAIGDINA 436

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 44  VIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
           V+G GYI +E A   VIN +   T +F   H   R F P I+    E   ++G +     
Sbjct: 172 VVGAGYIAVELAG--VINGLGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNA 229
Query: 103 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP---NTSLFEGQLTLEKGGIKVTG 159
           +  +   +++G +  + L DG     D ++  IG  P   N +L    +   + G  V  
Sbjct: 230 IPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVD 288
Query: 160 RLQSSN-SSVYAVGD 173
           + Q++N   +YAVGD
Sbjct: 289 KYQNTNIEGIYAVGD 303

>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide Oxidoreductase From Pyrococcus Horikoshii Length = 449

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 26  DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS 85
           DA  +   M+     N V+IGGGYIG+E A +      NVTM+      + R F  ++  
Sbjct: 135 DALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTD 194
Query: 86  YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 145
             EE  K K V      +  +  ++   +V  V + D      ++V++  GI+PN  L +
Sbjct: 195 ILEEKLK-KHVNLRLQEI--TMKIEGEERVEKV-VTDAGEYKAELVILATGIKPNIELAK 250
Query: 146 --GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 196
             G    E G I    ++Q+S  +VYA GDVA        ETR   HV + R+
Sbjct: 251 QLGVRIGETGAIWTNEKMQTSVENVYAAGDVA--------ETR---HVITGRR 292

>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 43  VVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 101
           V++GGGYIG+E A   + + + V T +      + R F   +     +   +KG+  +  
Sbjct: 195 VIVGGGYIGVEFAN--IFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYE 252
Query: 102 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVT--- 158
             +S   V S      V L +G  +  D V++  G  PNT+     L LE+ G+KV    
Sbjct: 253 ATVSQ--VQSTENCYNVVLTNGQTICADRVMLATGRVPNTT----GLGLERAGVKVNEFG 306
Query: 159 -----GRLQSSNSSVYAVGDV 174
                 ++ ++ S ++AVGDV
Sbjct: 307 AVVVDEKMTTNVSHIWAVGDV 327

>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase Length = 360

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 31  VNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY 90
           V  ++   G   V++GGG   ++    L+ N  +VT+V             K A   E  
Sbjct: 155 VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH---GKTAHEVERA 211
Query: 91  YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGNR--LPTDMVVVGIGIRPNTS-LFE 145
             +  +     T ++S + +SNG +  V+LR  DG++  +  D +++ IG + N   L  
Sbjct: 212 RANGTIDVYLETEVASIE-ESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLAR 270
Query: 146 GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
             L L +  + V   +++S   +YA GD+A +P KL
Sbjct: 271 WDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGKL 306

>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From Escherichia Coli Length = 320

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 115 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 163
           V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +     Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 164 SNSSVYAVGDV 174
           S   V+A GDV
Sbjct: 277 SIPGVFAAGDV 287

>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 115 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 163
           V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +     Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 164 SNSSVYAVGDV 174
           S   V+A GDV
Sbjct: 277 SIPGVFAAGDV 287

>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 115 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 163
           V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +     Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 164 SNSSVYAVGDV 174
           S   V+A GDV
Sbjct: 277 SIPGVFAAGDV 287

>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two Structurally Divergent Enzymes Length = 320

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 115 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 163
           V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +     Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 164 SNSSVYAVGDV 174
           S   V+A GDV
Sbjct: 277 SIPGVFAAGDV 287

>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 320

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 115 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 163
           V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +     Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 164 SNSSVYAVGDV 174
           S   V+A GDV
Sbjct: 277 SIPGVFAAGDV 287

>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPE-AHCMARLFTPKIASYYEEYYKSKGVKFVKG 101
           VVIG GYIG+E  +  V  +I   +   E A  +      +I   ++   + +G+KF   
Sbjct: 181 VVIGAGYIGLEMGS--VWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLK 238
Query: 102 TVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFE----GQLTLEKGG 154
           T +   D   +G  + V    G     +  D+V+V  G  P TS       G  T + G 
Sbjct: 239 TKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGR 298
Query: 155 IKVTGRLQSSNSSVYAVGDVAAFPL 179
           I V  R  ++ S VYA+GDV   P+
Sbjct: 299 ILVNERFSTNVSGVYAIGDVIPGPM 323

>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf Length = 521

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 39  GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF 98
           G    VIGGG  G+E A  L     +VT++          F P++ +      K + +K 
Sbjct: 355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE---------FAPEMKADQVLQDKVRSLKN 405
Query: 99  VKGTVLSSFDVDSNG---KVVAVNLRDGNRLPTDM-------VVVGIGIRPNTSLFEGQL 148
           V   +L++   +  G   KVV +  RD  R+  D+       + V IG+ PNT   EG L
Sbjct: 406 VD-IILNAQTTEVKGDGSKVVGLEYRD--RVSGDIHSVALAGIFVQIGLLPNTHWLEGAL 462
Query: 149 TLEK-GGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 182
              + G I +  + ++S   V+A GD    P K +
Sbjct: 463 ERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYKQI 497

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	9e-71
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	9e-68
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	2e-67
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	1e-66
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	1e-65
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	1e-64
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	3e-44
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	4e-43
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	6e-43
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	3e-42
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	2e-41
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	9e-41
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	1e-39
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	2e-38
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	2e-38
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	7e-38
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	4e-37
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	5e-34
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	8e-31
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	6e-19
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	2e-18
1fec_A	490	Trypanothione reductase; redox-active center, oxid	2e-18
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	9e-18
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	1e-17
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	4e-17
4dna_A	463	Probable glutathione reductase; structural genomic	7e-17
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	1e-16
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	2e-16
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	2e-16
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	5e-16
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	1e-15
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	8e-15
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	2e-14
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	2e-13
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	2e-13
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	2e-13
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	5e-13
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	2e-12
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	2e-12
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	7e-12
4fk1_A	304	Putative thioredoxin reductase; structural genomic	9e-12
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	1e-11
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	5e-08
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	1e-11
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	1e-11
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	2e-11
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	4e-11
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	4e-11
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	5e-11
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	7e-11
1ojt_A	482	Surface protein; redox-active center, glycolysis,	8e-11
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-10
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	2e-10
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	2e-10
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	4e-08
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	3e-10
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	3e-10
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	1e-09
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	2e-09
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	3e-09
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	4e-09
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	2e-08
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	2e-05
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	4e-08
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	1e-07
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	1e-07
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	8e-07
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	1e-06
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	2e-06
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	5e-06
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	6e-06
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	6e-06
3r9u_A	315	Thioredoxin reductase; structural genomics, center	7e-06
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	2e-05
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	2e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	2e-05

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score =  228 bits (582), Expect = 9e-71
 Identities = 69/306 (22%), Positives = 123/306 (40%), Gaps = 19/306 (6%)

Query: 4   KLEEFGLSGSD-AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 62
            L     +G++        R + D   L  + +     +  +IGGG++G E A +L    
Sbjct: 146 SLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE--VKSITIIGGGFLGSELACALGRKA 203

Query: 63  ----INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV 118
                 V  +FPE   M ++    ++++  E  + +GVK +   ++ S  V      + +
Sbjct: 204 RALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGKLLI 261

Query: 119 NLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLE--KGGIKVTGRLQSSNSSVYAVGDVA 175
            L+DG ++ TD +V  +G+ PN  L +   L ++   GG +V   LQ+  S+++  GD A
Sbjct: 262 KLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAA 320

Query: 176 AFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGD 234
            F    LG  RR+EH D A  S + A   +    K   + +   F+S +   + ++  G 
Sbjct: 321 CFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGAAKP--YWHQSMFWSDLGPDVGYEAIGL 377

Query: 235 NVG--EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAEL 292
                  V     +          +    G   E  T+ E   I        V +   + 
Sbjct: 378 VDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQG 437

Query: 293 ETQGLG 298
           E  G G
Sbjct: 438 EDYGKG 443

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score =  217 bits (556), Expect = 9e-68
 Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 9/256 (3%)

Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           +  +   +V YLR L ++  L   M      + VVIG G+IG+E AA+     + V +V 
Sbjct: 115 VPNASLPDVLYLRTLDESEVLRQRMPD--KKHVVVIGAGFIGLEFAATARAKGLEVDVVE 172

Query: 70  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 129
                MAR+ TP+I+SY+ + +   G++   G   +    +   +V  V L DGN LP D
Sbjct: 173 LAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSDGNTLPCD 231

Query: 130 MVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 188
           +VVVG+G+ PN  +     L     GI V  +L +S+  + A+GD A F     GET R+
Sbjct: 232 LVVVGVGVIPNVEIAAAAGLPTA-AGIIVDQQLLTSDPHISAIGDCALFESVRFGETMRV 290

Query: 189 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFS 246
           E V +A   A+   A +    K   +D  P+F+S       Q  G   G  +VV  G+ +
Sbjct: 291 ESVQNATDQARCVAARLTGDAKP--YDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVA 348

Query: 247 GTTFGAYWVNKGRLVG 262
             +F A+    G+L+G
Sbjct: 349 ERSFSAFCYKAGKLIG 364

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score =  217 bits (555), Expect = 2e-67
 Identities = 75/258 (29%), Positives = 130/258 (50%), Gaps = 9/258 (3%)

Query: 9   GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMV 68
             +   A N  YLR L DA  +   + +      VVIGGGYIG+E AA+ +   ++VT++
Sbjct: 121 SGAVGKANNFRYLRTLEDAECIRRQLIA--DNRLVVIGGGYIGLEVAATAIKANMHVTLL 178

Query: 69  FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNLRDGNRLP 127
              A  + R+  P ++++YE  ++  GV    GT +  F++ +   KV AV   DG RLP
Sbjct: 179 DTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLP 238

Query: 128 TDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETR 186
            D+V+ GIG+ PN  L     L ++  GI +   +Q+S+  + AVGD A F  +L     
Sbjct: 239 ADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWV 297

Query: 187 RLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGN 244
           R+E V +A + A+   A +         +  P+F+S  + +  +  G + G   ++  G+
Sbjct: 298 RIESVPNALEQARKIAAILCGKVPR--DEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGS 355

Query: 245 FSGTTFGAYWVNKGRLVG 262
            +   F  +++   R++ 
Sbjct: 356 LAQPDFSVFYLQGDRVLA 373

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score =  215 bits (549), Expect = 1e-66
 Identities = 63/256 (24%), Positives = 106/256 (41%), Gaps = 11/256 (4%)

Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           L GS    V  LR   D   L +   S      +++GGG IG E A +     ++VT++ 
Sbjct: 116 LPGSQLPGVVTLRTYGDVQVLRDSWTS--ATRLLIVGGGLIGCEVATTARKLGLSVTILE 173

Query: 70  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 129
                + R+   +I ++        GV+   GT +  F  +  G++  V   DG     D
Sbjct: 174 AGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGE--GQLEQVMASDGRSFVAD 231

Query: 130 MVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 188
             ++ +G  P   L     L  +  G+ V     +    V+AVGDVA++PL+  G  R L
Sbjct: 232 SALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLR-AGGRRSL 289

Query: 189 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFS 246
           E   +A++ A    AAI+  + +     LP  ++ +     Q  GD  G  + V  G   
Sbjct: 290 ETYMNAQRQAAAVAAAILGKNVS--APQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPG 347

Query: 247 GTTFGAYWVNKGRLVG 262
                 + + + R+  
Sbjct: 348 SGAALLFRLQERRIQA 363

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score =  212 bits (542), Expect = 1e-65
 Identities = 78/257 (30%), Positives = 124/257 (48%), Gaps = 9/257 (3%)

Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
             G+D   V  +R   DA+RL+  + +    NAVVIGGGYIG+E AA L    +NVT++ 
Sbjct: 124 CVGADLAGVHAVRTKEDADRLMAELDA-GAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLE 182

Query: 70  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 129
                +AR+    ++ +Y+  +++ GV    G  +   + D   KV  V ++DG+ +P D
Sbjct: 183 ALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVRMQDGSVIPAD 241

Query: 130 MVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL-GETRR 187
           +V+VGIGI P          +    G+ V    ++S + VYA+GD AA       G   R
Sbjct: 242 IVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIR 300

Query: 188 LEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNF 245
           LE V +A   A  A   I        +   P+F+S  + L  Q  G + G    V  G+ 
Sbjct: 301 LESVQNANDMATAAAKDICGAPVP--YKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDP 358

Query: 246 SGTTFGAYWVNKGRLVG 262
           +  +F   ++  G++V 
Sbjct: 359 ATRSFSVVYLKGGKVVA 375

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score =  209 bits (534), Expect = 1e-64
 Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 14/255 (5%)

Query: 12  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
                 V  LR L DA R+   ++       +++GGG IG+E AA+     ++V++V  +
Sbjct: 120 QGATMPVHTLRTLEDARRIQAGLRP--QSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177

Query: 72  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
              M+R     +A +   Y+ ++GV       ++            V L DG R+  DMV
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMV 231

Query: 132 VVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH 190
           VVGIG+  N +L     L  +  GI V    +++   VYA+GDV      L G   R+E 
Sbjct: 232 VVGIGVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIET 290

Query: 191 VDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE---VVHYGNFSG 247
             +A+         +++P     +  LP+++S    L  Q  G   G+   V    +   
Sbjct: 291 WSNAQNQGIAVARHLVDPTAPG-YAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDA 349

Query: 248 TTFGAYWVNKGRLVG 262
             F    + KGR+VG
Sbjct: 350 PKFTLIELQKGRIVG 364

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score =  156 bits (398), Expect = 3e-44
 Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 4/180 (2%)

Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           + G D +N+  +R    A +L          N VVIG GYIG+E A +       VT++ 
Sbjct: 120 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 179

Query: 70  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 129
                +      +      E  ++  +    G  +  +  + +G+V  V + D N    D
Sbjct: 180 ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERY--EGDGRVQKV-VTDKNAYDAD 236

Query: 130 MVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 188
           +VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD              +
Sbjct: 237 LVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNI 296

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score =  153 bits (390), Expect = 4e-43
 Identities = 37/178 (20%), Positives = 74/178 (41%), Gaps = 6/178 (3%)

Query: 12  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
           GS  E +   + L+ A   V ++++       VIG G IGME    LV  K  V +    
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLEN--SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESL 179

Query: 72  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
            + + + F  ++ +  ++  + + V F     +   +  +NG V+         +  D  
Sbjct: 180 ENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVL---ETSEQEISCDSG 236

Query: 132 VVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 188
           +  + + P  +  + ++       I V   LQ+S  +V+A+GD  +   + + ET   
Sbjct: 237 IFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYA 294

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score =  153 bits (390), Expect = 6e-43
 Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 5/180 (2%)

Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           + G D+  V   ++  DA +L             +IG GYIG E A +      NV ++ 
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFEEAPKAK--TITIIGSGYIGAELAEAYSNQNYNVNLID 179

Query: 70  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 129
                + + F  +      + Y++ GV  V G+ +++F+ + + +++     DG  + +D
Sbjct: 180 GHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEIITK-TLDGKEIKSD 237

Query: 130 MVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 188
           + ++ IG RPNT L +G++ + + G I     + SSN  ++A GD AA           +
Sbjct: 238 IAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYI 297

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score =  152 bits (386), Expect = 3e-42
 Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 4/179 (2%)

Query: 11  SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 70
             +  EN+ +++   ++  ++  +++       V+G GYIG+E A +       V ++  
Sbjct: 166 FEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDV 225

Query: 71  EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 130
              C+A  +   +     +  +  G++   G  +       NGKV  + + D N    DM
Sbjct: 226 VDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEV--AGNGKVEKI-ITDKNEYDVDM 282

Query: 131 VVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 188
           V++ +G RPNT+L  G++ L   G   V  R ++S   VYA+GD A        +T  +
Sbjct: 283 VILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNYI 341

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score =  149 bits (380), Expect = 2e-41
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 5/182 (2%)

Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV-INKINVTMV 68
           + G D   V  + +L +A  + + + +     AV++GGG+IG+E A SL  +  I+ T+V
Sbjct: 130 VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVV 189

Query: 69  FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT 128
                 M    +  ++       +   V    G  +   +   NGKV  V + D   L  
Sbjct: 190 ELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLDA 247

Query: 129 DMVVVGIGIRPNTSLF-EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETR 186
           D+V++  G+ PNT L  +  L L  +G I V  R+++S+  ++A GD    P  + G+  
Sbjct: 248 DLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPG 307

Query: 187 RL 188
             
Sbjct: 308 FF 309

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score =  147 bits (374), Expect = 9e-41
 Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 6/181 (3%)

Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           + G + + V       DA  +   M+     N V+IGGGYIG+E A +      NVTM+ 
Sbjct: 119 IEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIV 178

Query: 70  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 129
                + R F  ++    EE  K K V      +      +   +V  V + D      +
Sbjct: 179 RGERVLRRSFDKEVTDILEEKLK-KHVNLRLQEITMKI--EGEERVEKV-VTDAGEYKAE 234

Query: 130 MVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR 187
           +V++  GI+PN  L +   + + E G I    ++Q+S  +VYA GDVA     + G    
Sbjct: 235 LVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVW 294

Query: 188 L 188
           +
Sbjct: 295 V 295

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score =  145 bits (368), Expect = 1e-39
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 6/181 (3%)

Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
             G D + V  L+ + DA R++  +++    +  +IGGG IG+E A + V     V M+ 
Sbjct: 157 WEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIE 216

Query: 70  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 129
              H    ++   +A Y  +      ++ +    + +F    N +V AV   D      D
Sbjct: 217 RNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAF--KGNERVEAVET-DKGTYKAD 272

Query: 130 MVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR 187
           +V+V +G++PNT   EG  +    KG I+V   +Q++   VYA GD A     +      
Sbjct: 273 LVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDH 332

Query: 188 L 188
           +
Sbjct: 333 I 333

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score =  143 bits (363), Expect = 2e-38
 Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 7/177 (3%)

Query: 14  DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 73
           +A+ +  LR++ D +R+   +      +A VIGGG+IG+E   +L    I VT+V     
Sbjct: 162 EAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQ 221

Query: 74  CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 133
            M      ++A+Y  E+ K+  V+ V    + +   + NG VV +    G+ + TDM+++
Sbjct: 222 VMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDAL--EENGAVVRLK--SGSVIQTDMLIL 276

Query: 134 GIGIRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 188
            IG++P +SL +G  L L  +G IKV  + Q+S+  +YA+GD       +      +
Sbjct: 277 AIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMI 333

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score =  140 bits (354), Expect = 2e-38
 Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 14/210 (6%)

Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           + G   + +  + DL D  R             +++G G IG E A  L      + +V 
Sbjct: 118 VEGDAQDALYPINDLEDYARFRQAAAG--KRRVLLLGAGLIGCEFANDLSSGGYQLDVVA 175

Query: 70  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 129
           P    M  L  P  A   +   +  GV+F  G VL+S  +   G+ +  +L DG  +P D
Sbjct: 176 PCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLAS--LKKAGEGLEAHLSDGEVIPCD 233

Query: 130 MVVVGIGIRPNTSL-FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 188
           +VV  +G+RP T L F   L +   GI V   L++S++++YA+GD A        +   L
Sbjct: 234 LVVSAVGLRPRTELAFAAGLAVN-RGIVVDRSLRTSHANIYALGDCAEV------DGLNL 286

Query: 189 EHVDSARKSAKHAVAAIMEPDKTDKFDYLP 218
            +V      A+     +          Y P
Sbjct: 287 LYVMPLMACARALAQTLAGNPSQ--VAYGP 314

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score =  139 bits (353), Expect = 7e-38
 Identities = 33/179 (18%), Positives = 76/179 (42%), Gaps = 9/179 (5%)

Query: 12  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
           G +++    LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   
Sbjct: 121 GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRS 180

Query: 72  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
                 L    +     +    + + +     +++ +    G  +      G     DM+
Sbjct: 181 DKINK-LMDADMNQPILDELDKREIPYRLNEEINAIN----GNEITFK--SGKVEHYDMI 233

Query: 132 VVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 188
           + G+G  PN+   E   + L  KG I V  + +++  ++YA+GD+A    + +     +
Sbjct: 234 IEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 292

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score =  139 bits (353), Expect = 4e-37
 Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 20/198 (10%)

Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           + G D      LR++ D +R++  ++  +  +A V+GGG+IG+E   SL    I  T++ 
Sbjct: 122 IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLE 181

Query: 70  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV-------------- 115
                M      ++A +  +  + +GV    GT LS         V              
Sbjct: 182 LADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHI 240

Query: 116 ---VAVNLRDGNRLPTDMVVVGIGIRPNTSLF-EGQLTL-EKGGIKVTGRLQSSNSSVYA 170
              +++ L +G  L TD++++ IG+RP T L  +  L + E GGIKV   +Q+S+ ++YA
Sbjct: 241 KGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYA 300

Query: 171 VGDVAAFPLKLLGETRRL 188
           VGD       + G+   +
Sbjct: 301 VGDAVEEQDFVTGQACLV 318

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score =  128 bits (324), Expect = 5e-34
 Identities = 49/283 (17%), Positives = 106/283 (37%), Gaps = 29/283 (10%)

Query: 15  AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74
           A+ +  L    DA ++ +  K+   G A +IGGG +G+E A +++ +    ++     + 
Sbjct: 124 ADEIFSLYSYDDALKIKDECKN--KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP 181

Query: 75  MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 134
           + R        + ++     G+K    +                    G+ + +  V+  
Sbjct: 182 LERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRSSCVITA 226

Query: 135 IGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA 194
           +G++PN    +      K GI V   +++S   +YA GDVA F  K  G       ++ A
Sbjct: 227 VGVKPNLDFIKDTEIASKRGILVNDHMETSIKDIYACGDVAEFYGKNPG------LINIA 280

Query: 195 RKSAKHAVAAIMEPDKTDKFD-YLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFG 251
            K  + A       D +  +   +P    +V  +S    GD         + +     + 
Sbjct: 281 NKQGEVAGLNACGEDAS--YSEIIPSPILKVSGISIISCGDIENNKPSKVFRSTQEDKYI 338

Query: 252 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELET 294
              + + ++  + + G        + KA       ++++ L+ 
Sbjct: 339 VCMLKENKIDAAAVIGDVS-LGTKLKKAIDSSKSFDNISSLDA 380

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score =  119 bits (300), Expect = 8e-31
 Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 17/172 (9%)

Query: 15  AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74
            E +  LR + DA+R+   +++   G A++IGGG+IG+E A +L     +V ++    H 
Sbjct: 121 KEYLLTLRTIFDADRIKESIEN--SGEAIIIGGGFIGLELAGNLAEAGYHVKLI----HR 174

Query: 75  MARL--FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 132
            A       ++++  ++  +  GVKF   + L   + +         L +   +   + +
Sbjct: 175 GAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEE-------GVLTNSGFIEGKVKI 227

Query: 133 VGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG 183
             IGI PN  L     +   + GI +    ++S   VYA+GD A +   + G
Sbjct: 228 CAIGIVPNVDLARRSGIHTGR-GILIDDNFRTSAKDVYAIGDCAEYSGIIAG 278

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 86.5 bits (215), Expect = 6e-19
 Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 17/146 (11%)

Query: 40  GNAVVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 96
              + +GGG+I +E A    +       VT+ +     + R F   I     +   + G+
Sbjct: 192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGI 250

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE----- 151
           + +     +   ++++G    V    G  L  D+V++ IG  P T+     L L      
Sbjct: 251 EIMTNENPAKVSLNTDGSKH-VTFESGKTLDVDVVMMAIGRIPRTN----DLQLGNVGVK 305

Query: 152 ---KGGIKVTGRLQSSNSSVYAVGDV 174
              KGG++V    +++  ++YA+GD+
Sbjct: 306 LTPKGGVQVDEFSRTNVPNIYAIGDI 331

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 10/164 (6%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 100
            ++G GYI +E     VI ++  +  +       + R F   + +  E   K   +  V 
Sbjct: 180 GIVGSGYIAVELIN--VIKRLGIDSYIFARGNRIL-RKFDESVINVLENDMKKNNINIVT 236

Query: 101 GTVLSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTS---LFEGQLTLEKGGIK 156
              +      S+  +  ++L DG      D V+  +G  P+T    L +  +      I 
Sbjct: 237 FADVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIV 295

Query: 157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH 200
           V    ++S +++YAVGD          E   L  + +  +    
Sbjct: 296 VDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNK 339

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 84.9 bits (211), Expect = 2e-18
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 17/146 (11%)

Query: 40  GNAVVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 96
             A+ +GGGYI +E A    +       V + +     + R F  ++     E  ++ G+
Sbjct: 188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGI 246

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE----- 151
                   +    +++G    V    G     D+V++ IG  P +      L LE     
Sbjct: 247 NVRTHENPAKVTKNADGTRH-VVFESGAEADYDVVMLAIGRVPRSQ----TLQLEKAGVE 301

Query: 152 ---KGGIKVTGRLQSSNSSVYAVGDV 174
               G IKV    +++  ++YA+GDV
Sbjct: 302 VAKNGAIKVDAYSKTNVDNIYAIGDV 327

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 82.9 bits (206), Expect = 9e-18
 Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 26/149 (17%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------FTPKIASYYEEYYKS 93
               V+G GYIG+E     VIN +       + H           F P I+    E   +
Sbjct: 168 ERVAVVGAGYIGVELGG--VINGLGA-----KTHLFEMFDAPLPSFDPMISETLVEVMNA 220

Query: 94  KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE-- 151
           +G +     +  +   +++G +  + L DG     D ++  IG  P        + LE  
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPAND----NINLEAA 275

Query: 152 ------KGGIKVTGRLQSSNSSVYAVGDV 174
                 KG I V     ++   +YAVGD 
Sbjct: 276 GVKTNEKGYIVVDKYQNTNIEGIYAVGDN 304

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 17/145 (11%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------FTPKIASYYEEYYKS 93
              VV+G GYIG+E A   V + +       E H + R       F   I +   ++Y  
Sbjct: 186 KKVVVVGAGYIGIELAG--VFHGLGS-----ETHLVIRGETVLRKFDECIQNTITDHYVK 238

Query: 94  KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSL---FEGQLT 149
           +G+   K + +   + +     + +++ D   +   D ++  IG + +  +     G   
Sbjct: 239 EGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKL 298

Query: 150 LEKGGIKVTGRLQSSNSSVYAVGDV 174
                I       ++  ++Y++GDV
Sbjct: 299 NSHDQIIADEYQNTNVPNIYSLGDV 323

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 81.4 bits (202), Expect = 4e-17
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 21/146 (14%)

Query: 40  GNAVVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 96
            + V++GGGYIG+E A     L    +  T++      + R F   +     +   +KG+
Sbjct: 192 KSIVIVGGGYIGVEFANIFHGL---GVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGI 247

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE----- 151
             +    +S   V S      V L +G  +  D V++  G  PNT+     L LE     
Sbjct: 248 SIIYEATVSQ--VQSTENCYNVVLTNGQTICADRVMLATGRVPNTT----GLGLERAGVK 301

Query: 152 ---KGGIKVTGRLQSSNSSVYAVGDV 174
               G + V  ++ ++ S ++AVGDV
Sbjct: 302 VNEFGAVVVDEKMTTNVSHIWAVGDV 327

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 80.2 bits (199), Expect = 7e-17
 Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 20/146 (13%)

Query: 40  GNAVVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 96
            + ++ GGGYI +E A     L    +  T+++     +   F   +        + KG+
Sbjct: 171 ESILIAGGGYIAVEFANIFHGL---GVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGI 226

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE----- 151
           + +   ++ S   D++G+ V         +  D V++ +G  PNT+     L LE     
Sbjct: 227 RILCEDIIQSVSADADGRRV-ATTMKHGEIVADQVMLALGRMPNTN----GLGLEAAGVR 281

Query: 152 ---KGGIKVTGRLQSSNSSVYAVGDV 174
               G I V    ++S   +YA+GDV
Sbjct: 282 TNELGAIIVDAFSRTSTPGIYALGDV 307

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 79.5 bits (197), Expect = 1e-16
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 19/147 (12%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---L--FTPKIASYYEEYYKSK 94
           G  +V+G GYIG+ECA    +  +       E   M R   L  F  ++A       + +
Sbjct: 188 GKTLVVGAGYIGLECAG--FLKGLGY-----EPTVMVRSIVLRGFDQQMAELVAASMEER 240

Query: 95  GVKFVKGTVLSSFDVDSNGKVVA----VNLRDGNRLPTDMVVVGIGIRPNTS---LFEGQ 147
           G+ F++ TV  S +   +GK++     V   + +    D V+  IG +       L    
Sbjct: 241 GIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAG 300

Query: 148 LTLEKGGIKVTGRLQSSNSSVYAVGDV 174
           +T++K  I V  +  ++ +++YAVGD+
Sbjct: 301 VTVQKDKIPVDSQEATNVANIYAVGDI 327

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 35/177 (19%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVK 97
           +V+G G  G E        ++   VT+V   +     +        A   EE +  +GV+
Sbjct: 186 IVVGSGVTGAEFVD--AYTELGVPVTVV--AS--QDHVLPYEDADAALVLEESFAERGVR 239

Query: 98  FVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 157
             K    +S  V   G  V V + DG  +     ++ IG  PNT    G L LE+ GI++
Sbjct: 240 LFKNARAAS--VTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT---SG-LGLERVGIQL 293

Query: 158 TGR--------LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206
                       ++  + +YA GD              L  V  A    + A+   +
Sbjct: 294 GRGNYLTVDRVSRTLATGIYAAGDCTGLLP--------LASV--AAMQGRIAMYHAL 340

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 17/147 (11%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVK 97
           VV+GG    +E       N       M+         L      +  +Y  +  K +G++
Sbjct: 218 VVVGGSKTAVEYGC--FFNATGRRTVML--VR--TEPLKLIKDNETRAYVLDRMKEQGME 271

Query: 98  FVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPNTS-LFE--GQLTLE 151
            + G+ ++  + D+NG+V AV     N   R+ TD V +G+G +P ++ L +  G     
Sbjct: 272 IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGP 331

Query: 152 KGGIKVTGRLQSSNSSVYAVGDVAAFP 178
           KG + V   LQ+S  +VYAVGD+   P
Sbjct: 332 KGEVLVNEYLQTSVPNVYAVGDLIGGP 358

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 77.9 bits (193), Expect = 5e-16
 Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 40/193 (20%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------FTPKIASYYEEYYKS 93
               +IG GYIG+E A   ++          E   +A        F P +++   E   +
Sbjct: 167 KRVAIIGAGYIGIELAG--LLRSFGS-----EVTVVALEDRLLFQFDPLLSATLAENMHA 219

Query: 94  KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKG 153
           +G++      +++ + D+ G  + V          D V+  +G  PNT      L LE  
Sbjct: 220 QGIETHLEFAVAALERDAQGTTL-VAQDGTRLEGFDSVIWAVGRAPNTR----DLGLEAA 274

Query: 154 GIKVTGR--------LQSSNSSVYAVGDVAAFPLKLLGETRRLE--HVDSARKSAKHAVA 203
           GI+V             ++   VYA+GD+          T R +   V  A  + +    
Sbjct: 275 GIEVQSNGMVPTDAYQNTNVPGVYALGDI----------TGRDQLTPV--AIAAGRRLAE 322

Query: 204 AIMEPDKTDKFDY 216
            + +     K DY
Sbjct: 323 RLFDGQSERKLDY 335

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 76.8 bits (190), Expect = 1e-15
 Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 33/184 (17%)

Query: 43  VVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARLFT---PKIASYYEEYYKSKGV 96
            VIG   + +E A   A L      VT++         LF    P I       ++++G+
Sbjct: 180 AVIGSSVVALELAQAFARL---GSKVTVL-----ARNTLFFREDPAIGEAVTAAFRAEGI 231

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEK 152
           + ++ T  S         V+         L  D ++V  G  PNT        G     +
Sbjct: 232 EVLEHTQASQVAHMDGEFVLTT---THGELRADKLLVATGRTPNTRSLALDAAGVTVNAQ 288

Query: 153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTD 212
           G I +   +++SN ++YA GD    P           +V  A  +   A   +       
Sbjct: 289 GAIVIDQGMRTSNPNIYAAGDCTDQPQ--------FVYV--AAAAGTRAAINMT--GGDA 336

Query: 213 KFDY 216
             D 
Sbjct: 337 ALDL 340

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 74.1 bits (183), Expect = 8e-15
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 32/156 (20%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------FTPKIASYYEEYYKS 93
           G +V++G GYI +E A   +++ +       +   M R       F   I++   E  ++
Sbjct: 188 GRSVIVGAGYIAVEMAG--ILSALGS-----KTSLMIRHDKVLRSFDSMISTNCTEELEN 240

Query: 94  KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT-------DMVVVGIGIRPNTSLFEG 146
            GV+ +K + +       +G  V++      RLP        D ++  IG  PNT     
Sbjct: 241 AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK---- 296

Query: 147 QLTLE--------KGGIKVTGRLQSSNSSVYAVGDV 174
            L+L         KG I V     ++   +YAVGDV
Sbjct: 297 DLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDV 332

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 31/154 (20%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---L--FTPKIASYYEEYYKSK 94
           G  +V+G  Y+ +ECA    +  I +     +   M R   L  F  +++S   E+ +S 
Sbjct: 186 GKTLVVGASYVALECAG--FLTGIGL-----DTTVMMRSIPLRGFDQQMSSLVTEHMESH 238

Query: 95  GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-----LPTDMVVVGIGIRPNTSLFEGQLT 149
           G +F+KG V S        ++  V   D           D V+  IG  P T      L 
Sbjct: 239 GTQFLKGCVPSHIKKLPTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETR----TLN 293

Query: 150 LEKGGIKVTGR---------LQSSNSSVYAVGDV 174
           LEK GI    +           +S   +YA+GDV
Sbjct: 294 LEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDV 327

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 70.2 bits (173), Expect = 2e-13
 Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 27/150 (18%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 96
           +V+GGG IG+E     V +++   V ++  E   M R   P    +++   E  +K +G+
Sbjct: 171 IVVGGGVIGLELGV--VWHRLGAEVIVL--EY--MDR-ILPTMDLEVSRAAERVFKKQGL 223

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIK 156
               G  +++  V    K   V L  G  L  D V+V +G RP T   EG L+LE  G+ 
Sbjct: 224 TIRTGVRVTA--VVPEAKGARVELEGGEVLEADRVLVAVGRRPYT---EG-LSLENAGLS 277

Query: 157 VTGR--------LQSSNSSVYAVGDVAAFP 178
              R        L++    +YA+GDV   P
Sbjct: 278 TDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 32/156 (20%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---L--FTPKIASYYEEYYKSK 94
           G  +V+G  Y+ +ECA    +  I +     +   M R   L  F   +A+   E+ +  
Sbjct: 211 GKTLVVGASYVALECAG--FLAGIGL-----DVTVMVRSILLRGFDQDMANKIGEHMEEH 263

Query: 95  GVKFVKGTVLSSFDVDSNGK--VVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQ 147
           G+KF++  V    +    G    + V  +  N         + V++ IG    T     +
Sbjct: 264 GIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR----K 319

Query: 148 LTLEKGGIKVTGRL---------QSSNSSVYAVGDV 174
           + LE  G+K+  +          Q++   +YA+GD+
Sbjct: 320 IGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDI 355

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 30/153 (19%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 96
           ++ G G IGME     V+     +VT+V  E   + R   P     ++   E+ +K  GV
Sbjct: 175 IIAGAGAIGMEFGY--VLKNYGVDVTIV--EF--LPR-ALPNEDADVSKEIEKQFKKLGV 227

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFEGQLTLEKG 153
             +  T + S  +   G  V V +        L  + V+  IG  PN    EG   L+K 
Sbjct: 228 TILTATKVES--IADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNV---EG-YGLDKA 281

Query: 154 GIKVTGR--------LQSSNSSVYAVGDVAAFP 178
           G+ +T R        ++++   +YA+GDV    
Sbjct: 282 GVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL 314

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 29/156 (18%)

Query: 40  GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 97
           G  +VIG  Y+ +ECA    +  +  +VT++      + R F  ++A    +Y ++ GVK
Sbjct: 287 GKTLVIGASYVALECAG--FLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVK 342

Query: 98  FVKGTVLSSFDVDSNGKV---------VAVNLRDGNRLPT--DMVVVGIGIRPNTSLFEG 146
           F K  V                     V  +  DG +     + V+  +G  P  S    
Sbjct: 343 FAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLS---- 398

Query: 147 QLTLE--------KGGIKVTGRLQSSNSSVYAVGDV 174
           ++  E         G +  T   Q++ S+VYA+GD+
Sbjct: 399 KVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDI 434

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 28/153 (18%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 96
           VVIG GYIG+E  +  V  +I   VT+V  E    +    P    +I   ++   + +G+
Sbjct: 181 VVIGAGYIGLEMGS--VWGRIGSEVTVV--EF--ASE-IVPTMDAEIRKQFQRSLEKQGM 233

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT---DMVVVGIGIRPNTSLFEGQLTLEKG 153
           KF   T +   D   +G  + V    G        D+V+V  G  P T    G L L+K 
Sbjct: 234 KFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT---SG-LNLDKI 289

Query: 154 GIKVTGR--------LQSSNSSVYAVGDVAAFP 178
           G++              ++ S VYA+GDV   P
Sbjct: 290 GVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 27/152 (17%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVK 97
            V G G IG+E      ++++   V +          +      ++  Y E+ +  +   
Sbjct: 178 AVFGPGVIGLELGQ--ALSRLGVIVKVF--GR--SGSVANLQDEEMKRYAEKTFN-EEFY 230

Query: 98  FVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLTLEKGGI 155
           F     + S     +   V    + G +       V+   G + N    +  L LE   I
Sbjct: 231 FDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV---DK-LGLENTSI 286

Query: 156 KVTGR---------LQSSNSSVYAVGDVAAFP 178
           ++  +         LQ+S   ++  GD     
Sbjct: 287 ELDKKNSPLFDELTLQTSVDHIFVAGDANNTL 318

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 65.3 bits (160), Expect = 7e-12
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 28/153 (18%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 96
           +V+GGG IG+E  +  V  ++   VT+V  E   +          ++A   +     +G+
Sbjct: 202 IVVGGGVIGLELGS--VWARLGAKVTVV--EF--LDT-ILGGMDGEVAKQLQRMLTKQGI 254

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFEGQLTLEKG 153
            F  G  ++      +G  V      G     L  ++V++  G +P+T   +G L L K 
Sbjct: 255 DFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST---DG-LGLAKA 310

Query: 154 GIKVTGR--------LQSSNSSVYAVGDVAAFP 178
           G+ +  R         Q+S + VYA+GDV   P
Sbjct: 311 GVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 64.1 bits (157), Expect = 9e-12
 Identities = 17/145 (11%), Positives = 40/145 (27%), Gaps = 14/145 (9%)

Query: 39  GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF 98
               ++I            LV N     ++    +      +  I     +   +K +  
Sbjct: 146 DQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGN----ELSQTIM----DELSNKNIPV 197

Query: 99  VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL---EKGGI 155
           +  ++  +   +  G +  V    G R+      +           E QL       G  
Sbjct: 198 ITESI-RTLQGE-GGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIE-QLGCELQSNGTF 254

Query: 156 KVTGRLQSSNSSVYAVGDVAAFPLK 180
            +    ++S  ++Y  G+       
Sbjct: 255 VIDDFGRTSEKNIYLAGETTTQGPS 279

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 13/148 (8%)

Query: 39  GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF 98
           G    VIGGG  G+E A  L     +VT++         +   ++    ++    K V  
Sbjct: 355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLL----EFAPEMKADQVLQ--DKVRSLKNVDI 408

Query: 99  VKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQLTLEKG 153
           +     +    D + KVV +  RD        +    + V IG+ PNT   EG L   + 
Sbjct: 409 ILNAQTTEVKGDGS-KVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRM 467

Query: 154 G-IKVTGRLQSSNSSVYAVGDVAAFPLK 180
           G I +  + ++S   V+A GD    P K
Sbjct: 468 GEIIIDAKCETSVKGVFAAGDCTTVPYK 495

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 24/149 (16%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYE------EYYKSK 94
           V+IG GYIG+E A+  +   +     ++  E          +     E            
Sbjct: 176 VIIGAGYIGLEIAS--IFRLMGVQTHII--E-------MLDRALITLEDQDIVNTLLSIL 224

Query: 95  GVKFVKGT-VLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTS--LFEGQLT 149
            +     + V     +  +   V  + +DG++  + T+ VV+  G RP       E  L+
Sbjct: 225 KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLS 284

Query: 150 LEKGGIKVTGRLQSSNSSVYAVGDVAAFP 178
           + K GI V   ++++  +V+A GD     
Sbjct: 285 ISKTGIVVDETMKTNIPNVFATGDANGLA 313

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 19/154 (12%)

Query: 38  SGGNAVVIGGGYIGMECAASLVINKINVTMV-----FPEA-HCMARLFTPKIASYYEEYY 91
            G   V++GGG   ++    L+ N  +VT+V     F         +         E   
Sbjct: 162 KGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEV---------ERAR 212

Query: 92  KSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGN--RLPTDMVVVGIGIRPNTSLF-EGQ 147
            +  +     T ++S +  +     V +   DG+   +  D +++ IG + N        
Sbjct: 213 ANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWD 272

Query: 148 LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
           L L +  + V   +++S   +YA GD+A +P KL
Sbjct: 273 LELYENALVVDSHMKTSVDGLYAAGDIAYYPGKL 306

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 30/151 (19%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 96
            +IGGG IG+E  +  V +++   VT+V  E              ++A   +++ K +G+
Sbjct: 187 TIIGGGIIGLEMGS--VYSRLGSKVTVV--E---FQPQIGASMDGEVAKATQKFLKKQGL 239

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNR-----LPTDMVVVGIGIRPNTSLFEGQLTLE 151
            F   T + S   + +  VV + + D        L  ++++V +G RP      G L  E
Sbjct: 240 DFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYI---AG-LGAE 295

Query: 152 KGGIKVTGR--------LQSSNSSVYAVGDV 174
           K G++V  R          S    +  VGDV
Sbjct: 296 KIGLEVDKRGRLVIDDQFNSKFPHIKVVGDV 326

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 32/177 (18%), Positives = 48/177 (27%), Gaps = 23/177 (12%)

Query: 4   KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGG--YIGMECAASLVIN 61
           +     L  ++   V    DL              G   VV      Y+G   A  L   
Sbjct: 495 RFHTTALPIAEGMQVLGPDDLFAGRLPD-------GKKVVVYDDDHYYLGGVVAELLAQK 547

Query: 62  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121
              V++V P A   +        +  +      GV  V    + +      G V   +  
Sbjct: 548 GYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVG---AGGVTVRDTY 604

Query: 122 DGNR--LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAA 176
                 L  D VV+     P   L+   +     G            SV  +GD  A
Sbjct: 605 ASIERELECDAVVMVTARLPREELYLDLVARRDAGEIA---------SVRGIGDAWA 652

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 62.5 bits (153), Expect = 5e-11
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 28/153 (18%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 96
           +VIGGG +G+E     V  ++   VT++  E         P    + A+      + +G+
Sbjct: 173 LVIGGGAVGLELGQ--VYRRLGAEVTLI--E---YMPEILPQGDPETAALLRRALEKEGI 225

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFEGQLTLEKG 153
           +    T    ++   +G  V +   +G     +  D V+V +G +P T      L LEK 
Sbjct: 226 RVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEG----LGLEKA 281

Query: 154 GIKVTGR--------LQSSNSSVYAVGDVAAFP 178
           G+KV  R        +++S   VYA+GD A  P
Sbjct: 282 GVKVDERGFIRVNARMETSVPGVYAIGDAARPP 314

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 62.1 bits (152), Expect = 7e-11
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 18/145 (12%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVK 97
           VV+GGGYIG+E        K+   V++V  EA    R+   +  ++ +   E  K  G+ 
Sbjct: 175 VVVGGGYIGLELGI--AYRKLGAQVSVV--EA--RERILPTYDSELTAPVAESLKKLGIA 228

Query: 98  FVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTS---LFEGQLTLEKG 153
              G  +  ++   NG ++A + + G  RL  D V+V +G RP T    L    L +   
Sbjct: 229 LHLGHSVEGYE---NGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA 285

Query: 154 GIKVTGRLQSSNSSVYAVGDVAAFP 178
            I +  R Q+S  +V+A+GDVA  P
Sbjct: 286 AIAIDERCQTSMHNVWAIGDVAGEP 310

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 61.8 bits (151), Expect = 8e-11
 Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 27/152 (17%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 96
           ++IGGG IG+E     V + +   + +V  E   M           +   +++  + +  
Sbjct: 189 LIIGGGIIGLEMGT--VYSTLGSRLDVV--E---MMDGLMQGADRDLVKVWQKQNEYRFD 241

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLTLEKGG 154
             +  T   + +   +G  V     +  +     D V+V  G  PN  L    ++ EK G
Sbjct: 242 NIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKL----ISAEKAG 297

Query: 155 IKVTGR--------LQSSNSSVYAVGDVAAFP 178
           + VT R        ++++   +YA+GD+   P
Sbjct: 298 VAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP 329

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 26/151 (17%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 96
            VIG G IG+E  +  V  ++   VT++  E       F P    ++A   ++    +G+
Sbjct: 184 GVIGAGVIGLELGS--VWARLGAEVTVL--E---AMDKFLPAVDEQVAKEAQKILTKQGL 236

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTSLFEGQLTLEKGGI 155
           K + G  ++  +V +    V     +G +    D ++V +G RP T      L     G+
Sbjct: 237 KILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT---TD-LLAADSGV 292

Query: 156 KVTGR--------LQSSNSSVYAVGDVAAFP 178
            +  R          +S   VYA+GDV    
Sbjct: 293 TLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 24/152 (15%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEA--HCMARLFTPKIASYYEEYYKSKGVKF 98
           VVIG G IG+E  +  V  ++  +VT V  E   H        +I+  ++   + +G KF
Sbjct: 182 VVIGAGVIGVELGS--VWQRLGADVTAV--EFLGHVGGVGIDMEISKNFQRILQKQGFKF 237

Query: 99  VKGTVLSSFDVDSNGKV-VAVNLRDGNRLPT---DMVVVGIGIRPNTSLFEGQLTLEKGG 154
              T ++     S+GK+ V++    G +      D+++V IG RP T      L LE+ G
Sbjct: 238 KLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKN----LGLEELG 293

Query: 155 IKVTGR--------LQSSNSSVYAVGDVAAFP 178
           I++  R         Q+   ++YA+GDV A P
Sbjct: 294 IELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 37/228 (16%), Positives = 71/228 (31%), Gaps = 51/228 (22%)

Query: 15  AENVCYLRDLADANRLVNVMKSCSGGNAVV---------------IGGGYIGME--CAAS 57
            +    + +   A +L   ++S  GGN  +                       +  C   
Sbjct: 122 DKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGP 181

Query: 58  L---------------VINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
           +               +++K++VT+  P  +      +P         Y   G+K V   
Sbjct: 182 VFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSD--LSPNSRKAVASIYNQLGIKLVHNF 239

Query: 103 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL--EKGGIKVTGR 160
            +         ++V      GN +P D+ ++      N +L      L  + G I     
Sbjct: 240 KIKEIR---EHEIV---DEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDLN 293

Query: 161 LQSSN-SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207
           + S    +VYAVGD  +  +  LG          A  + + A   +  
Sbjct: 294 MVSIKYDNVYAVGDANSMTVPKLGY--------LAVMTGRIAAQHLAN 333

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 14/117 (11%)

Query: 43  VVIGGGYIGMECAASL---VINKINVTMVFPEAH---------CMARLFTPK-IASYYEE 89
           +V+GG +  +  A +L   V +K +V ++                  +     +     E
Sbjct: 5   LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSE 64

Query: 90  YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 146
               KG++F +GTV    D  S+                D V+VGIG    T L +G
Sbjct: 65  ALPEKGIQFQEGTV-EKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKG 120

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 36/153 (23%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEA---------HCMARLFTPKIASYYEEYY 91
           VVIGGG IG+E  +  V  ++   VT+V  E            +       +A       
Sbjct: 178 VVIGGGVIGLELGS--VWARLGAEVTVV--EFAPRCAPTLDEDVTNALVGALA------- 226

Query: 92  KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLT 149
           K++ +KF+  T +     + +   + V  ++G R  +  + ++V +G RP T    G L 
Sbjct: 227 KNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFT---GG-LG 282

Query: 150 LEKGGIKVTGR--------LQSSNSSVYAVGDV 174
           L+K  +    R         ++S   VYA+GDV
Sbjct: 283 LDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 28/152 (18%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVK 97
           VVIGGGYIG+E             VT++  E      +   F  ++A+  ++  K KGV+
Sbjct: 174 VVIGGGYIGIELGT--AYANFGTKVTIL--EG--AGEILSGFEKQMAAIIKKRLKKKGVE 227

Query: 98  FVKGTVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFEGQLTLEKGG 154
            V   +      +     V V          +  D V+V +G RPNT      L LE+ G
Sbjct: 228 VVTNALAKG--AEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDE----LGLEQIG 281

Query: 155 IKVTGR--------LQSSNSSVYAVGDVAAFP 178
           IK+T R         ++S  +++A+GD+   P
Sbjct: 282 IKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP 313

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 88  EEYYKSKGVKFVKGTVLSSFDVDSNGK-VVAVNLRDGN--RLPTDMVVVGIGIRPNTSLF 144
            + ++   ++ +    L   + D   +  V  + +      L  D V++  G        
Sbjct: 198 MKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPL 257

Query: 145 EG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
               L LEK  IKV   + +S   VYA GD+  +P KL
Sbjct: 258 ANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGKL 295

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 19/147 (12%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 100
           V IGGG  G    A++ +++   NVT++      M +         Y +  K + + ++ 
Sbjct: 159 VTIGGGNSGAI--AAISMSEYVKNVTII----EYMPKYMCENA---YVQEIKKRNIPYIM 209

Query: 101 GTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGG 154
              ++    D   KV  V  +D        + TD V + +G+ P TS  +   + L++ G
Sbjct: 210 NAQVTEIVGDGK-KVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERG 268

Query: 155 -IKVTGRLQSSNSSVYAVGDVAAFPLK 180
            I V  R ++S   VYA GDV +    
Sbjct: 269 YIVVDSRQRTSVPGVYAAGDVTSGNFA 295

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 56.7 bits (138), Expect = 3e-09
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 17/146 (11%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 100
            VIGGG  G+E  A++ +  I  +VT++         +   ++    ++    K V  + 
Sbjct: 148 AVIGGGNSGVE--AAIDLAGIVEHVTLL----EFAPEMKADQVLQ--DKLRSLKNVDIIL 199

Query: 101 GTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQLTLEKGG- 154
               +    D + KVV +  RD        +    + V IG+ PNT+  EG +   + G 
Sbjct: 200 NAQTTEVKGDGS-KVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGE 258

Query: 155 IKVTGRLQSSNSSVYAVGDVAAFPLK 180
           I +  + +++   V+A GD    P K
Sbjct: 259 IIIDAKCETNVKGVFAAGDCTTVPYK 284

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 92  KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEG 146
            +  V  +   V +   +    K+  + L +        L  D ++V  G   +    + 
Sbjct: 200 HASKVNVLTPFVPAE--LIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKN 257

Query: 147 -QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 181
             L +EK  I V   ++++    +A GD+  +  K+
Sbjct: 258 WGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGKV 293

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 29/134 (21%)

Query: 43  VVIGGGYIGMECAASL---VINKINVTMVFP-EAHCMARLFTP-------------KIAS 85
           V++G G  GM  A  +   + +   VT++   +       F P              IA 
Sbjct: 8   VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF----QFVPSNPWVGVGWKERDDIAF 63

Query: 86  YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 145
               Y + KG+ F+  +     D ++      + L DGN +  D +++  G +       
Sbjct: 64  PIRHYVERKGIHFIAQSA-EQIDAEAQ----NITLADGNTVHYDYLMIATGPKLAFENVP 118

Query: 146 GQLTLEKGGIKVTG 159
           G    +     V  
Sbjct: 119 G---SDPHEGPVQS 129

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 32/206 (15%), Positives = 59/206 (28%), Gaps = 35/206 (16%)

Query: 3   LKLEEFGLSGSD-----AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECA-- 55
            KL    + GSD      +++C +     A               +VIG    G  C   
Sbjct: 110 PKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQ--ALLREPGPIVIGAM-AGASCFGP 166

Query: 56  ----ASLV------------INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 99
               A +V            I         P    +             +  K +G++  
Sbjct: 167 AYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAY 226

Query: 100 KGTVLSSFDVDSNGKVVAVNLRDGNR-----LPTDMVVVGIGIRPNTSLFEGQLTLEKGG 154
               ++   V+ N   V      G       LP    ++    +   ++   +     GG
Sbjct: 227 TNCKVTK--VEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGG 284

Query: 155 -IKVTGRLQSSN-SSVYAVGDVAAFP 178
            + V    +S   ++++A G   A P
Sbjct: 285 FVLVDEHQRSKKYANIFAAGIAIAIP 310

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 40/152 (26%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMVFPEAH---------CMA-RLF-TPKIASYYEE 89
           VVIGGG   +E    + + K    VT++    H             R F  PK+      
Sbjct: 156 VVIGGGDAAVEEG--MFLTKFADEVTVI----HRRDTLRANKVAQARAFANPKM------ 203

Query: 90  YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLF 144
                  KF+  T +   ++     V  V LR+      + L TD V + IG  PNT+  
Sbjct: 204 -------KFIWDTAVE--EIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFV 254

Query: 145 EGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVA 175
           +  ++L   G + V   + ++   ++A GDV+
Sbjct: 255 KDTVSLRDDGYVDVRDEIYTNIPMLFAAGDVS 286

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 26/154 (16%)

Query: 39  GGNAVVIGGG--YIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 96
           G   V++     ++    A  L      VT+V          FT +  +     ++   V
Sbjct: 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHE-LHV 586

Query: 97  KFVKGTVLSSFDVDS---------------NGKVVAVNLRDGNR--LPTDMVVVGIGIRP 139
           + +     S  +                   G  V+    + +   +  D +V+  G   
Sbjct: 587 EELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHS 646

Query: 140 NTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGD 173
             +L+     L+    +     ++    +Y +GD
Sbjct: 647 ECTLWNE---LKARESEWA---ENDIKGIYLIGD 674

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 35/162 (21%)

Query: 39  GGNAVVIGGGYIGMECA-ASLVINKINVTMVF--PEAHCMARLFTPKIASYYEEYYKSK- 94
            G  +V+G G    +CA ++L      V +VF     +  A           EE   +K 
Sbjct: 332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVP---------EEVELAKE 382

Query: 95  -GVKFVKGTVLSSFDVDSNGKVVAVNLR------DGNR---------LPTDMVVVGIG-I 137
              +F+         +   G++VAV          G           L  D+V+   G +
Sbjct: 383 EKCEFLPFLSPRKV-IVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSV 441

Query: 138 RPNTSLFEGQLTLE---KGGIKVTGR-LQSSNSSVYAVGDVA 175
             +  + E    ++       +V    +Q+S   V+A GD+ 
Sbjct: 442 LRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV 483

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 16/115 (13%)

Query: 43  VVIGGGYIGMECAASLVI--NKINVTMVFP-EAHC--------MARLFTPKIASYYEEYY 91
           VV+GGG  G   A  + +    I VT++ P   +         +      +   +  +  
Sbjct: 6   VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGL 65

Query: 92  KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 146
           ++ G++ V  +  +  D D       V    G     D  VV  GI       EG
Sbjct: 66  RAHGIQVVHDSA-TGIDPDKK----LVKTAGGAEFGYDRCVVAPGIELIYDKIEG 115

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 37/151 (24%)

Query: 43  VVIGGGYIGMECAASLVINKI--NVTMV-----FPEAHCMA-RLF-TPKIASYYEEYYKS 93
            VIGGG   ME A    + +   +VT+V     F  +  M  R     KI          
Sbjct: 159 AVIGGGDSAMEEA--TFLTRFARSVTLVHRRDEFRASKIMLDRARNNDKI---------- 206

Query: 94  KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQL 148
              +F+    +    VD +  V  + +RD N      LP   V V IG  P + L    +
Sbjct: 207 ---RFLTNHTVV--AVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAI 261

Query: 149 TLEKGG-IKVTGRLQSSNSS---VYAVGDVA 175
            ++  G + V GR  ++++S   V+A GD+ 
Sbjct: 262 DVDPDGYVLVQGR--TTSTSLPGVFAAGDLV 290

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 11/75 (14%)

Query: 112 NGKVVAVNLRDGN------RLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSN 165
              V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +  + 
Sbjct: 214 QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNA 273

Query: 166 SS-----VYAVGDVA 175
           +      V+A GDV 
Sbjct: 274 TQTSIPGVFAAGDVM 288

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 110 DSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVT-GRLQ 162
                +  + +++        L    +   IG  P T   +G + L+  G +    G  Q
Sbjct: 225 GERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQ 284

Query: 163 SSNSSVYAVGDVA 175
           +S   V+A GDV 
Sbjct: 285 TSVPGVFAAGDVQ 297

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 46.3 bits (111), Expect = 6e-06
 Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 112 NGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFEGQLTL------EKGGIKVTGR 160
              V ++++++        L      + +G   N ++ + +         E G I V   
Sbjct: 209 ASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFS 268

Query: 161 LQSSNSSVYAVGDVA 175
           ++++   ++A GD+ 
Sbjct: 269 MKTNVQGLFAAGDIR 283

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 46.3 bits (111), Expect = 6e-06
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 96  VKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFEGQ-LT 149
           V+FV  +V+   ++  +  V  V + +        L  + V + IG  P T   +   + 
Sbjct: 205 VEFVLNSVVK--EIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIE 262

Query: 150 LEKGG-IKVTGRLQSSNSSVYAVGDV 174
            +  G IKV   +++S   V+A GD 
Sbjct: 263 TDTNGYIKVDEWMRTSVPGVFAAGDC 288

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 115 VVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFEGQLTL------EKGGIKVTGRLQSSNS 166
            V V L+DG    L    +   +G+     + +   +       E G + V  ++Q+S +
Sbjct: 218 GVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVA 277

Query: 167 SVYAVGDVA 175
            ++A GD+ 
Sbjct: 278 GLFAAGDLR 286

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 92  KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG----- 146
            ++GV+     +     +  +  VV   L DG  +    +     +R      E      
Sbjct: 185 AARGVRVETTRIRE---IAGHADVV---LADGRSIALAGLFTQPKLRITVDWIEKLGCAV 238

Query: 147 QLTLEKGGIKVTGRLQSSNSSVYAVGDVA 175
           +       I      Q++   ++A GDVA
Sbjct: 239 EEGPMGSTIVTDPMKQTTARGIFACGDVA 267

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 112 NGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVT-GRLQSS 164
              + A+ +++        LP   +   IG  P T +  GQ+  ++ G IK   G   +S
Sbjct: 239 GKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTS 298

Query: 165 NSSVYAVGDVA 175
               +A GDV 
Sbjct: 299 VPGFFAAGDVQ 309

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 35/203 (17%), Positives = 54/203 (26%), Gaps = 65/203 (32%)

Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           + G D   V    D+      V       G    +IG G IG + A  L     + +   
Sbjct: 472 IDGIDHPKVLSYLDVLRDKAPV-------GNKVAIIGCGGIGFDTAMYLSQPGESTSQNI 524

Query: 70  PE-------------AHCMARLFTPKIASYYEEYY------------------------K 92
                          A  ++        S  +                            
Sbjct: 525 AGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLL 584

Query: 93  SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLTL 150
           S+GVK + G      D D         + +G    L  D VV+  G  PN +L +     
Sbjct: 585 SRGVKMIPGVSYQKIDDDG-----LHVVINGETQVLAVDNVVICAGQEPNRALAQP---- 635

Query: 151 EKGGIKVTGRLQSSNSSVYAVGD 173
                     L  S  +V+ +G 
Sbjct: 636 ----------LIDSGKTVHLIGG 648

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.95
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.92
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.92
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.92
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.91
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.91
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.91
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.91
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.91
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.91
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.91
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.91
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.9
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.9
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.89
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.89
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.88
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.88
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.88
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.88
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.88
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.88
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.87
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.87
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.86
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.86
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.86
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.85
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.85
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.85
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.84
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.83
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.81
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.81
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.79
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.77
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.77
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.74
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.73
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.71
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.53
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.5
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.34
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.34
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.32
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.13
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.02
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.99
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.97
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.92
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.92
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.92
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.88
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.87
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.87
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.86
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.86
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.83
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.83
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.83
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.83
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.82
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.82
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.82
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.79
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.79
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.79
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.78
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.77
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.77
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.77
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.77
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.77
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.77
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.77
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.76
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.74
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.74
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.74
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.72
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.72
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.7
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.7
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.7
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.69
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.69
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.68
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.68
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.68
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.68
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.68
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.67
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.67
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.66
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.65
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.64
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.63
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.63
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.62
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.6
3dme_A	369	Conserved exported protein; structural genomics, P	98.6
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.58
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.58
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.58
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.58
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.57
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.57
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.56
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.56
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.56
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.55
3atr_A	453	Conserved archaeal protein; saturating double bond	98.54
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.54
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.54
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.54
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.53
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.52
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.52
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.52
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.5
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.5
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.5
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.5
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.49
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.47
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.46
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.46
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.45
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.45
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.43
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.41
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.41
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.41
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.41
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.4
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.4
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.39
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.38
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.37
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.36
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.36
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.35
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.35
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.34
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.33
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.33
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.33
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.32
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.31
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.31
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.3
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.29
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.29
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.29
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.29
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.28
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.28
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.27
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.26
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.25
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.25
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.24
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.24
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.23
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.23
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.22
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.21
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.21
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.21
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.21
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.21
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.21
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.21
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.2
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.19
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.19
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.19
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.18
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.18
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.18
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.17
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.17
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.17
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.17
4dna_A	463	Probable glutathione reductase; structural genomic	98.12
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.09
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.08
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.08
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.06
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.05
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.0
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.0
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.99
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.99
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.96
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.95
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.95
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.9
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.89
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.87
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.87
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.83
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.75
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.73
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.69
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.68
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.66
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.58
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.58
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.56
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.48
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.47
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.29
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.1
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.03
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.01
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.96
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.93
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.92
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.83
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	96.56
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	96.48
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	96.4
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	96.36
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	96.34
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	96.31
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	96.27
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	96.25
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	96.21
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	96.19
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	96.14
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	96.14
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.02
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	96.01
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	96.0
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.96
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	95.95
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	95.91
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	95.83
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.81
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.75
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	95.73
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	95.72
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.7
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	95.68
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	95.65
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	95.61
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	95.58
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	95.56
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.44
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.38
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.33
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.33
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	95.32
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.1
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.1
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.09
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.83
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	94.8
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	94.71
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	94.65
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	94.5
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.45
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.39
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	94.38
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.24
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	94.08
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.02
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.97
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	93.9
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	93.71
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	93.68
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	93.41
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	93.15
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.06
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.02
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.92
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	92.71
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.59
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	92.52
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	92.51
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	92.45
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	92.36
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	92.34
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	92.33
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	92.09
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	92.0
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	92.0
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	91.99
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	91.97
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	91.94
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	91.94
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	91.89
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	91.85
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	91.74
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.65
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	91.61
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	91.59
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	91.55
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	91.55
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	91.55
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.51
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	91.51
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	91.5
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	91.36
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	91.29
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	91.26
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	91.25
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	91.21
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	91.18
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.17
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.02
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	91.0
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	90.92
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	90.9
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	90.87
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	90.85
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	90.72
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	90.66
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	90.57
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	90.57
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	90.53
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	90.53
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	90.52
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	90.52
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	90.49
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	90.49
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	90.46
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	90.45
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	90.37
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	90.35
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	90.33
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	90.27
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	90.22
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	90.22
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	90.2
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	90.18
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	90.12
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	90.09
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	90.02
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	89.92
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	89.88
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	89.87
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	89.86
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	89.85
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	89.82
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	89.81
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	89.81
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	89.8
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	89.69
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	89.67
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	89.66
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	89.65
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	89.64
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	89.63
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	89.6
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	89.59
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	89.54
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	89.52
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	89.49
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	89.49
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	89.48
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	89.45
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	89.44
4g65_A	461	TRK system potassium uptake protein TRKA; structur	89.4
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	89.4
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	89.37
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.33
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	89.32
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	89.32
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	89.31
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	89.23
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	89.23
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	89.2
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	89.18
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	89.17
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	89.16
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	89.11
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	89.04
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	89.01
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	89.0
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	88.98
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	88.95
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	88.93
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	88.91
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	88.88
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	88.88
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	88.87
3qha_A	296	Putative oxidoreductase; seattle structural genomi	88.85
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.85
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	88.84
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	88.8
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	88.78
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	88.76
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	88.76
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	88.74
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	88.71
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	88.7
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	88.68
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	88.68
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	88.67
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	88.67
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	88.64
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	88.59
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	88.57
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	88.56
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	88.55
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	88.55
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	88.53
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	88.49
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	88.39
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	88.38
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	88.37
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	88.36
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	88.35
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	88.34
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	88.33
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	88.28
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	88.25
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	88.25
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	88.24
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	88.23
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	88.21
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	88.21
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	88.18
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	88.18
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	88.17
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	88.15
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	88.13
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	88.13
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	88.12
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	88.12
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	88.11
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	88.08
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	88.04
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.03
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	88.03
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	87.99
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	87.99
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	87.98
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	87.97
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	87.97
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	87.97
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	87.93
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	87.87
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	87.85
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	87.83
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	87.82
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	87.82

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=1.9e-48  Score=383.96  Aligned_cols=301  Identities=17%  Similarity=0.287  Sum_probs=259.2

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||   ++++++++++|+..+++.+....+++++|||||++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus       115 ~p~~p~i~g---~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~  190 (437)
T 4eqs_A          115 SANSLGFES---DITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADM  190 (437)
T ss_dssp             EECCCCCCC---TTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGG
T ss_pred             ccccccccC---ceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-ccchh
Confidence            466666666   57999999999999999887667899999999999999999999999999999999999987 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEeccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL  161 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~l  161 (356)
                      ++.+.+.|+++||++++++++++++.      ..+.+++|+++++|.|++++|++||+++++.. +.. ++|+|.||++|
T Consensus       191 ~~~~~~~l~~~gV~i~~~~~v~~~~~------~~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~  264 (437)
T 4eqs_A          191 NQPILDELDKREIPYRLNEEINAING------NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKF  264 (437)
T ss_dssp             GHHHHHHHHHTTCCEEESCCEEEEET------TEEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTC
T ss_pred             HHHHHHHhhccceEEEeccEEEEecC------CeeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCc
Confidence            99999999999999999999999864      14778999999999999999999999988765 666 67889999999


Q ss_pred             ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE-
Q 018416          162 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV-  240 (356)
Q Consensus       162 ~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~-  240 (356)
                      |||+|+|||+|||+..++..++.+.+.+++..|.+||+.+|+||+|.......+.++..+..++++.++++|+++.++. 
T Consensus       265 ~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~  344 (437)
T 4eqs_A          265 ETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQ  344 (437)
T ss_dssp             BCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGG
T ss_pred             cCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCCcccccceeEEeeeeccceEEEeeCCHHHHHh
Confidence            9999999999999999998888888889999999999999999999765334456777788899999999999886531 


Q ss_pred             ------E--EccC------CCCceEEEEe--eCCeEEEEEEeCCC-HH-HHHHHHHHHHcCCCcCcHHHHhhcCCCcccC
Q 018416          241 ------H--YGNF------SGTTFGAYWV--NKGRLVGSFLEGGT-KE-EYEAIAKATRLQPVVEDLAELETQGLGFALA  302 (356)
Q Consensus       241 ------~--~g~~------~~~~~~~~~~--~~g~ilGa~~vg~~-~~-~~~~~a~ai~~~~~~~dl~~l~~~~~~yap~  302 (356)
                            .  ....      +..+|.|+..  ++++|||+|++|++ +. .++.++.||++++|++||.+++   ++|+|+
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~yhP~  421 (437)
T 4eqs_A          345 FDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFE---VAFAPP  421 (437)
T ss_dssp             SCEEEEEEEEESSCTTSSSCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCC---CCCCTT
T ss_pred             CCceEEEEecCCchhhcCCCCcEEEEEEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCc---cccCCC
Confidence                  1  1111      1123666554  68999999999975 55 4678999999999999999999   999999


Q ss_pred             cCCCCCCCCcccccc
Q 018416          303 VSQKPLPSTPVDGKT  317 (356)
Q Consensus       303 ~~~~~~~~~~~~~~~  317 (356)
                      |+++.+++++.+++|
T Consensus       422 ~s~~~d~v~~aa~~A  436 (437)
T 4eqs_A          422 YSHPKDLINMIGYKA  436 (437)
T ss_dssp             TCCSSCHHHHHHHTT
T ss_pred             CCchHHHHHHHHHhc
Confidence            999999888877653

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=3.5e-46  Score=371.03  Aligned_cols=317  Identities=21%  Similarity=0.249  Sum_probs=262.2

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHC-CCcEEEEeeCCccCCccCCHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~-G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|..+++||.+.++++++++..++..+++.+....+++++|||+|++|+|+|..|++. |.+||++++.++++++.++++
T Consensus       124 ~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~  203 (472)
T 3iwa_A          124 KANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKS  203 (472)
T ss_dssp             EECCCSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHH
T ss_pred             CcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHH
Confidence            5778899999889999999999999998887654689999999999999999999999 999999999999999559999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEecc
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGR  160 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~  160 (356)
                      +.+.+.+.+++.||++++++++++++. +++.+. +.+.+|+++++|.||+|+|++|++++++.. +.. ++|+|.||++
T Consensus       204 ~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~-v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~  281 (472)
T 3iwa_A          204 LSQMLRHDLEKNDVVVHTGEKVVRLEG-ENGKVA-RVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTR  281 (472)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEE-EEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTT
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEc-cCCeEE-EEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCC
Confidence            999999999999999999999999987 355543 778889999999999999999999987653 665 5789999999


Q ss_pred             cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE
Q 018416          161 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV  240 (356)
Q Consensus       161 l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~  240 (356)
                      +||+.|+|||+|||+..+...+|.+.+.+++..|.+||+.||+||+|... .....+|++++.+|++.++++|+++.++.
T Consensus       282 ~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~a~vG~~e~~a~  360 (472)
T 3iwa_A          282 MRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDA-TFPGAVGSWAVKLFEGSASGAGLTVEGAL  360 (472)
T ss_dssp             CBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCC-CCCCBCCCEEEECSSCEEEEEECCHHHHH
T ss_pred             cccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCCc-cCCCCCcceEEEECCceeEEEECCHHHHH
Confidence            99999999999999998887778777778899999999999999998764 24456788899999999999999875421


Q ss_pred             ---------EEcc--------CCCCceEEEEe--eCCeEEEEEEeCC--C--HHHHHHHHHHHHcCCCcCcHHHHhhcCC
Q 018416          241 ---------HYGN--------FSGTTFGAYWV--NKGRLVGSFLEGG--T--KEEYEAIAKATRLQPVVEDLAELETQGL  297 (356)
Q Consensus       241 ---------~~g~--------~~~~~~~~~~~--~~g~ilGa~~vg~--~--~~~~~~~a~ai~~~~~~~dl~~l~~~~~  297 (356)
                               .+..        .+..+|.|+..  ++|+|||+|++|+  +  .+.++.++.||++++|++||.+++   +
T Consensus       361 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~---~  437 (472)
T 3iwa_A          361 REGYDAVNVHVEQFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAE---V  437 (472)
T ss_dssp             HTTCCEEEEEEEC-----------CEEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCC---C
T ss_pred             HcCCceEEEEEecCCccCccCCCceEEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhccc---c
Confidence                     1111        11124666665  6899999999998  2  345788999999999999999988   9


Q ss_pred             CcccCcCCCCCCCCccccccccccccCcc
Q 018416          298 GFALAVSQKPLPSTPVDGKTVPGLVLGKS  326 (356)
Q Consensus       298 ~yap~~~~~~~~~~~~~~~~~n~~~~~~~  326 (356)
                      .|+|+|+++.++.+..++.+.|.++|+.-
T Consensus       438 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~  466 (472)
T 3iwa_A          438 VYSPPFASAMDIVNVAGNVADNVLAGREG  466 (472)
T ss_dssp             C--------CCHHHHHHHHHHHHHC----
T ss_pred             cCCCCCCCcccHHHHHHHHHHHhhcCccc
Confidence            99999999999999999999999999653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=2.6e-45  Score=372.15  Aligned_cols=325  Identities=23%  Similarity=0.317  Sum_probs=279.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.+++++++++.++..+.+.+....+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++
T Consensus       116 ~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~  194 (565)
T 3ntd_A          116 APIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-VDREM  194 (565)
T ss_dssp             EECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-SCHHH
T ss_pred             CCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-cCHHH
Confidence            57888999999899999999999999988776667899999999999999999999999999999999999995 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEc------------------CCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVD------------------SNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~------------------~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                      .+.+.+.|+++||++++++.+++++.+                  +++.+ .+.+.+|+++++|.||+|+|++|++++++
T Consensus       195 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  273 (565)
T 3ntd_A          195 AGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHL-SLTLSNGELLETDLLIMAIGVRPETQLAR  273 (565)
T ss_dssp             HHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEE-EEEETTSCEEEESEEEECSCEEECCHHHH
T ss_pred             HHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcE-EEEEcCCCEEEcCEEEECcCCccchHHHH
Confidence            999999999999999999999999863                  23433 46778899999999999999999999876


Q ss_pred             cc-ccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCC-CCCeEEE
Q 018416          146 GQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFD-YLPFFYS  222 (356)
Q Consensus       146 ~~-l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~-~~p~~~~  222 (356)
                      .. +.. ++|+|.||+++||+.|+|||+|||+..++..+|.+.+.+++..|..||+.||+||+|...  .+. ..++.++
T Consensus       274 ~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~~~~~  351 (565)
T 3ntd_A          274 DAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREE--RYQGTQGTAIC  351 (565)
T ss_dssp             HHTCCBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCC--CCCCBCCCEEE
T ss_pred             hCCcccCCCCCEEECCCcccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCCc--cCCCcccceEE
Confidence            53 665 578999999999999999999999998887778777778999999999999999998763  343 3566778


Q ss_pred             EecCceEEEeecccceEE---------EEccC--------CCCceEEEEe--eCCeEEEEEEeCCCH--HHHHHHHHHHH
Q 018416          223 RVFTLSWQFYGDNVGEVV---------HYGNF--------SGTTFGAYWV--NKGRLVGSFLEGGTK--EEYEAIAKATR  281 (356)
Q Consensus       223 ~~~~~~~~~~G~~~~~~~---------~~g~~--------~~~~~~~~~~--~~g~ilGa~~vg~~~--~~~~~~a~ai~  281 (356)
                      .+|++.++++|+++.++.         .+...        ...+|.|+..  ++|+|||+|++|+++  +.++.++.||+
T Consensus       352 ~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~  431 (565)
T 3ntd_A          352 KVFDLAVGATGKNEKQLKQAGIAFEKVYVHTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQR  431 (565)
T ss_dssp             EETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHH
T ss_pred             EEcCcEEEEecCCHHHHHHcCCCeEEEEEecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHH
Confidence            899999999999875421         11111        1123667666  689999999999886  45788999999


Q ss_pred             cCCCcCcHHHHhhcCCCcccCcCCCCCCCCccccccccccccCccccchhhhhh
Q 018416          282 LQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAG  335 (356)
Q Consensus       282 ~~~~~~dl~~l~~~~~~yap~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~  335 (356)
                      +++|++||.+++   +.|+|+|++..++.+..++.+.|.+.+..+.|+++|+..
T Consensus       432 ~~~~~~~l~~~~---~~~~P~~~~~~~~i~~aa~~~~~~~~~~~~~i~~~~~~~  482 (565)
T 3ntd_A          432 AGMTVEQLQHLE---LSYAPPYGSAKDVINQAAFVASNIIKGDATPIHFDQIDN  482 (565)
T ss_dssp             TTCBHHHHTTCC---CCCCTTTCCSSCHHHHHHHHHHHHHHTSCCEECTTTTTS
T ss_pred             cCCCHHHHhhhh---hccCcccCchhhhhhhhhhhhhhccccccceeeHHHHHh
Confidence            999999999988   999999999999999888888999999999999998865

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=1.1e-44  Score=369.72  Aligned_cols=325  Identities=24%  Similarity=0.320  Sum_probs=281.3

Q ss_pred             CCccCCCCCC-CCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            4 KLEEFGLSGS-DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~~ipG~-~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|..+++||. +.+++++.+++.++.+++..+....+++++|||+|++|+|+|..|++.|.+||++++.+++++. ++++
T Consensus       151 ~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~  229 (588)
T 3ics_A          151 KPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYE  229 (588)
T ss_dssp             EECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHH
T ss_pred             CCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHH
Confidence            5778899998 7889999999999999988876557899999999999999999999999999999999999998 8999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEecc
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGR  160 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~  160 (356)
                      +.+.+.+.|++.||++++++++++++.+ ++   .+.+.+|+++++|.||+|+|++|++++++.. +.. ++|+|.||++
T Consensus       230 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~---~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~  305 (588)
T 3ics_A          230 MAAYVHEHMKNHDVELVFEDGVDALEEN-GA---VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEK  305 (588)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEGG-GT---EEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTT
T ss_pred             HHHHHHHHHHHcCCEEEECCeEEEEecC-CC---EEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCc
Confidence            9999999999999999999999999753 22   4677899999999999999999999987654 665 6789999999


Q ss_pred             cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018416          161 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME-PDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  239 (356)
Q Consensus       161 l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  239 (356)
                      +||+.|+|||+|||+..++..+|.+.+.+++..|..||+.||+||+| ... .....+|+.+..+|++.++++|+++.++
T Consensus       306 ~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~~~~~~~~~~~a~vGlte~~a  384 (588)
T 3ics_A          306 FQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDS-LYKGTLGTSVAKVFDLTVATTGLNEKIL  384 (588)
T ss_dssp             SBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSS-CCCCBCCCEEEEETTEEEEEEECCHHHH
T ss_pred             cccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCcc-ccCCcccceEEEECCeEEEEecCCHHHH
Confidence            99999999999999998877778777778999999999999999998 442 3445678888889999999999987542


Q ss_pred             E---------EEc--cC------CCCceEEEEe--eCCeEEEEEEeCCC-H-HHHHHHHHHHHcCCCcCcHHHHhhcCCC
Q 018416          240 V---------HYG--NF------SGTTFGAYWV--NKGRLVGSFLEGGT-K-EEYEAIAKATRLQPVVEDLAELETQGLG  298 (356)
Q Consensus       240 ~---------~~g--~~------~~~~~~~~~~--~~g~ilGa~~vg~~-~-~~~~~~a~ai~~~~~~~dl~~l~~~~~~  298 (356)
                      .         .+.  ..      ...+|.|+..  ++|+|||+|++|+. + +.++.++.||++++|++||.+++   +.
T Consensus       385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l~~~~---~~  461 (588)
T 3ics_A          385 KRLNIPYEVVHVQANSHAGYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLPDLE---LS  461 (588)
T ss_dssp             HHTTCCCEEEEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTGGGCC---CC
T ss_pred             HHcCCCeEEEEEecCCccccCCCCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHhhhhh---hc
Confidence            1         111  10      1123667665  68999999999974 4 45788999999999999999999   99


Q ss_pred             cccCcCCCCCCCCccccccccccccCccccchhhhhhHH
Q 018416          299 FALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVI  337 (356)
Q Consensus       299 yap~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~  337 (356)
                      |+|+|++.+++.+.+++.+.|.+.+..+.|+++|+.+..
T Consensus       462 ~~P~~~~~~d~i~~aa~~a~n~~~~~~~~i~~~~~~~~~  500 (588)
T 3ics_A          462 YAPPYSSAKDPVNMVGYAASNIVDGFVDTVQWHEIDRIV  500 (588)
T ss_dssp             CSTTTCCSSCHHHHHHHHHHHHHTTSCCEECTTTHHHHH
T ss_pred             cCCCcccccchhhhcccccccccccccceecHHHHHHHh
Confidence            999999999999999888999999999999999987765

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.1e-43  Score=350.93  Aligned_cols=305  Identities=21%  Similarity=0.233  Sum_probs=258.4

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.+++++.++.+++..+++.+....+++++|||+|++|+|+|..|++.|.+||++++.+++++..+|+++
T Consensus       113 ~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~  192 (449)
T 3kd9_A          113 SPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEV  192 (449)
T ss_dssp             EECCCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHH
T ss_pred             CCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHH
Confidence            57788999999899999999999999998886556899999999999999999999999999999999999987689999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEeccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL  161 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~l  161 (356)
                      .+.+.+.|++. |++++++.+++++.+  +.+..+ +.+++++++|.|++|+|++|++++++.. +.. ++|+|.||+++
T Consensus       193 ~~~l~~~l~~~-v~i~~~~~v~~i~~~--~~v~~v-~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~  268 (449)
T 3kd9_A          193 TDILEEKLKKH-VNLRLQEITMKIEGE--ERVEKV-VTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKM  268 (449)
T ss_dssp             HHHHHHHHTTT-SEEEESCCEEEEECS--SSCCEE-EETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTC
T ss_pred             HHHHHHHHHhC-cEEEeCCeEEEEecc--CcEEEE-EeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCC
Confidence            99999999999 999999999999853  233333 4577899999999999999999987654 666 57889999999


Q ss_pred             ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE-
Q 018416          162 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV-  240 (356)
Q Consensus       162 ~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~-  240 (356)
                      ||+.|+|||+|||+..++..+|.+.+.+++..|..||+.+|.||+|... ......|++++.++++.++++|+++.++. 
T Consensus       269 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~  347 (449)
T 3kd9_A          269 QTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKEL-HFPGVLGTAVTKFMDVEIGKTGLTEMEALK  347 (449)
T ss_dssp             BCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHH
T ss_pred             ccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCCc-cCCCcccceEEEEcCcEEEEecCCHHHHHH
Confidence            9999999999999998887778777778999999999999999998753 23345688899999999999999875421 


Q ss_pred             --------EEc--c------CCCCceEEEEe--eCCeEEEEEEeCCCHH-HHHHHHHHHHcCCCcCcHHHHhhcCCCccc
Q 018416          241 --------HYG--N------FSGTTFGAYWV--NKGRLVGSFLEGGTKE-EYEAIAKATRLQPVVEDLAELETQGLGFAL  301 (356)
Q Consensus       241 --------~~g--~------~~~~~~~~~~~--~~g~ilGa~~vg~~~~-~~~~~a~ai~~~~~~~dl~~l~~~~~~yap  301 (356)
                              .+.  .      ....+|.|+..  ++|+|||+|++|+.+. .++.++.||++++|++||.+++   +.|+|
T Consensus       348 ~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~~p  424 (449)
T 3kd9_A          348 EGYDVRTAFIKASTRPHYYPGGREIWLKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTD---LAYAP  424 (449)
T ss_dssp             TTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCC---CCCBT
T ss_pred             CCCceEEEEEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcc---cccCC
Confidence                    111  0      11123777665  4699999999998755 4678999999999999999988   99999


Q ss_pred             CcCCCCCCCCccccc
Q 018416          302 AVSQKPLPSTPVDGK  316 (356)
Q Consensus       302 ~~~~~~~~~~~~~~~  316 (356)
                      +|++..++.+..++.
T Consensus       425 ~~~~~~~~~~~~~~~  439 (449)
T 3kd9_A          425 PFAPVWDPLIVLARV  439 (449)
T ss_dssp             TTBCSSCHHHHHHHH
T ss_pred             CCCCchhHHHHHHHH
Confidence            999999888776643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=1.5e-43  Score=350.20  Aligned_cols=310  Identities=18%  Similarity=0.293  Sum_probs=257.6

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.++++++++++++.++.+.+.  .+++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++
T Consensus       116 ~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~  193 (452)
T 2cdu_A          116 KPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAP--KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEF  193 (452)
T ss_dssp             EECCCCCTTTTSTTEEECSSHHHHHHHHHHGG--GCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHH
T ss_pred             CcCCCCCCCCCCCCEEEeCcHHHHHHHHHHhc--cCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhH
Confidence            57778899998889999999999999988775  5899999999999999999999999999999999999996699999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhccccc-ccCcEEEecccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQ  162 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~I~vd~~l~  162 (356)
                      .+.+.+.|+++||++++++++++++. +++.+..+.+ +|+++++|.|++|+|++|++++++..+.. ++|+|.||++||
T Consensus       194 ~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~~~  271 (452)
T 2cdu_A          194 TDILAKDYEAHGVNLVLGSKVAAFEE-VDDEIITKTL-DGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMH  271 (452)
T ss_dssp             HHHHHHHHHHTTCEEEESSCEEEEEE-ETTEEEEEET-TSCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCTTSB
T ss_pred             HHHHHHHHHHCCCEEEcCCeeEEEEc-CCCeEEEEEe-CCCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECCCcC
Confidence            99999999999999999999999986 3555544554 78899999999999999999987765555 568899999999


Q ss_pred             cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE--
Q 018416          163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV--  240 (356)
Q Consensus       163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~--  240 (356)
                      |+.|+|||+|||+..+...+|.+.+++++..|.+||+.||.||++... ......|++++.+|++.++++|.++.++.  
T Consensus       272 t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~  350 (452)
T 2cdu_A          272 SSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKV-KDMGTQSSSGLKLYGRTYVSTGINTALAKAN  350 (452)
T ss_dssp             CSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHHT
T ss_pred             cCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCCC-cCCCccceEEEEECCeeeEeecCCHHHHHHc
Confidence            999999999999998776667666678999999999999999998642 23345678889999999999998864321  


Q ss_pred             -------EEcc--------CCCCceEEEEe--eCCeEEEEEEeCC-CHH-HHHHHHHHHHcCCCcCcHHHHhhcCCCccc
Q 018416          241 -------HYGN--------FSGTTFGAYWV--NKGRLVGSFLEGG-TKE-EYEAIAKATRLQPVVEDLAELETQGLGFAL  301 (356)
Q Consensus       241 -------~~g~--------~~~~~~~~~~~--~~g~ilGa~~vg~-~~~-~~~~~a~ai~~~~~~~dl~~l~~~~~~yap  301 (356)
                             .+.+        ....+|.++..  ++|+|+|+|++|+ .+. .++.++.+|++++|++||.+++   +.|+|
T Consensus       351 g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~---~~~~P  427 (452)
T 2cdu_A          351 NLKVSEVIIADNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVD---MLFQP  427 (452)
T ss_dssp             TCCCEEEEEEEESSCTTBSCCCEEEEEEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSC---CCCCT
T ss_pred             CCceEEEEEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhh---hccCC
Confidence                   1111        01123666655  4799999999998 554 4678899999999999998776   78999


Q ss_pred             CcCCCCCCCCcccccccccc
Q 018416          302 AVSQKPLPSTPVDGKTVPGL  321 (356)
Q Consensus       302 ~~~~~~~~~~~~~~~~~n~~  321 (356)
                      +|++...+.+..++.+.|.+
T Consensus       428 t~~e~~~~~~~aa~~~~~~~  447 (452)
T 2cdu_A          428 QFDRPFNYLNILGQAAQAQA  447 (452)
T ss_dssp             TTCCSSCHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhh
Confidence            99998776666665544443

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=9.5e-44  Score=351.73  Aligned_cols=306  Identities=16%  Similarity=0.178  Sum_probs=253.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+.+++++.++++++..+.+...  .+++++|||+|++|+|+|..|++.|.+||++++.++++++.+|+++
T Consensus       114 ~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~  191 (452)
T 3oc4_A          114 SQFSTQIRGSQTEKLLKYKFLSGALAAVPLLE--NSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEM  191 (452)
T ss_dssp             CBCCCCCBTTTCTTEEEGGGCC----CCHHHH--TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHH
T ss_pred             ccCCCCCCCCCCCCEEEeCCHHHHHHHHHHHh--cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHH
Confidence            57888999999899999999988888777665  5899999999999999999999999999999999999987689999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhccccc-ccCcEEEecccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQ  162 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~I~vd~~l~  162 (356)
                      .+.+.+.|+++||++++++++++++. +++.+ .+.++++ ++++|.|++|+|++|++++++..+.. ++|+|.||++||
T Consensus       192 ~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v-~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~~~~  268 (452)
T 3oc4_A          192 VAEVQKSLEKQAVIFHFEETVLGIEE-TANGI-VLETSEQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQ  268 (452)
T ss_dssp             HHHHHHHHHTTTEEEEETCCEEEEEE-CSSCE-EEEESSC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCTTCB
T ss_pred             HHHHHHHHHHcCCEEEeCCEEEEEEc-cCCeE-EEEECCC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECcCcc
Confidence            99999999999999999999999986 34555 6777776 89999999999999999988765555 678999999999


Q ss_pred             cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE--
Q 018416          163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV--  240 (356)
Q Consensus       163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~--  240 (356)
                      |+.|+|||+|||+..+...+|.+.+.+++..|..||+.||.||++.... .....++..+.+|+..++++|+++.++.  
T Consensus       269 t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~~~~~~~~~~a~vG~te~~a~~~  347 (452)
T 3oc4_A          269 TSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHR-FIGSLRTMGTKVGDYYLASTGLTETEGLFF  347 (452)
T ss_dssp             CSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCCCC-CCCCCCCEEEEETTEEEEEEECCSGGGGGS
T ss_pred             CCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCCcc-CCCccccEEEEEcCeeEEEecCCHHHHHHC
Confidence            9999999999999987766677666788999999999999999986531 2223456677889999999999876432  


Q ss_pred             -------EEcc------CCCCceEEEEe--eCCeEEEEEEeCC-CH-HHHHHHHHHHHcCCCcCcHHHHhhcCCCcccCc
Q 018416          241 -------HYGN------FSGTTFGAYWV--NKGRLVGSFLEGG-TK-EEYEAIAKATRLQPVVEDLAELETQGLGFALAV  303 (356)
Q Consensus       241 -------~~g~------~~~~~~~~~~~--~~g~ilGa~~vg~-~~-~~~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~  303 (356)
                             .+..      .+..+|.|+..  ++|+|||+|++|+ .+ +.++.++.||++++|++||.+++   +.|+|+|
T Consensus       348 g~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~~P~~  424 (452)
T 3oc4_A          348 PQTLASIIVRQPAPPLQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKD---YFYQPSL  424 (452)
T ss_dssp             SSCEEEEEEEEECTTTTCSCEEEEEEEEETTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCC---CCCCTTT
T ss_pred             CCceEEEEEecCCccCCCCCeEEEEEEEECCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhH---hccCCCC
Confidence                   1111      01234777665  5699999999998 44 45688999999999999999887   8999999


Q ss_pred             CCCCCCCCccccccc
Q 018416          304 SQKPLPSTPVDGKTV  318 (356)
Q Consensus       304 ~~~~~~~~~~~~~~~  318 (356)
                      +++.++.+..+..+.
T Consensus       425 ~~~~~~~~~a~~~~~  439 (452)
T 3oc4_A          425 TNIYDITNLMGASAY  439 (452)
T ss_dssp             SCSSCHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHH
Confidence            999888887765443

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=100.00  E-value=5.4e-43  Score=349.80  Aligned_cols=308  Identities=19%  Similarity=0.238  Sum_probs=254.8

Q ss_pred             CCccCCCCCCC-----------CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416            4 KLEEFGLSGSD-----------AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus         4 ~p~~~~ipG~~-----------~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      +|..+++||.+           .++++++++++++.++.+.+....+++++|||+|++|+|+|..|+++|.+||++++.+
T Consensus       148 ~p~~p~i~G~~~~~~~~~f~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~  227 (490)
T 2bc0_A          148 QPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVD  227 (490)
T ss_dssp             EECCCSCBTCCBCTTCTTCCBSSTTEEECSSHHHHHHHHHHTTSTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CcCCCCCCCccccccccccccccCCEEEeCCHHHHHHHHHHhhhcCCceEEEECCCHHHHHHHHHHHHCCCeEEEEEccc
Confidence            57778899987           6899999999999999888743468999999999999999999999999999999999


Q ss_pred             ccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhccccc-c
Q 018416           73 HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-E  151 (356)
Q Consensus        73 ~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~-~  151 (356)
                      +++++.+|+++.+.+.+.|++.||++++++++++++.  ++.+..+.+ +|+++++|.||+|+|++|++++++..+.. +
T Consensus       228 ~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~ll~~~l~~~~  304 (490)
T 2bc0_A          228 TCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAG--NGKVEKIIT-DKNEYDVDMVILAVGFRPNTTLGNGKIDLFR  304 (490)
T ss_dssp             STTTTTSCHHHHHHHHHHHHTTTCEEEETCCEEEEEC--SSSCCEEEE-SSCEEECSEEEECCCEEECCGGGTTCSCBCT
T ss_pred             chhhhHHHHHHHHHHHHHHHhCCeEEEeCCEEEEEEc--CCcEEEEEE-CCcEEECCEEEECCCCCcChHHHHhhhccCC
Confidence            9998669999999999999999999999999999985  444434555 67899999999999999999987766555 5


Q ss_pred             cCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEE
Q 018416          152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQF  231 (356)
Q Consensus       152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~  231 (356)
                      +|+|.||++|||+.|+|||+|||+..+...+|.+.+++++..|.+||+.||.||++... ......|++++.+|++.+++
T Consensus       305 ~G~I~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~  383 (490)
T 2bc0_A          305 NGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTDL-EGIGVQGSNGISIYGLHMVS  383 (490)
T ss_dssp             TSCBCCCTTCBCSSTTEEECGGGBCEEETTTTEEECCCCHHHHHHHHHHHHHHHTTCCC-CCCCBCCCEEEEETTEEEEE
T ss_pred             CCCEEECCCcccCCCCEEEeeeeEEeccccCCceeecccHHHHHHHHHHHHHHhcCCCC-CCCCcccceEEEECCcEeEE
Confidence            78899999999999999999999998766666666678899999999999999998642 23345677888999999999


Q ss_pred             eecccceEE------E---Ec---c----C--CCCceEEEEe--eCCeEEEEEEeCC-CH-HHHHHHHHHHHcCCCcCcH
Q 018416          232 YGDNVGEVV------H---YG---N----F--SGTTFGAYWV--NKGRLVGSFLEGG-TK-EEYEAIAKATRLQPVVEDL  289 (356)
Q Consensus       232 ~G~~~~~~~------~---~g---~----~--~~~~~~~~~~--~~g~ilGa~~vg~-~~-~~~~~~a~ai~~~~~~~dl  289 (356)
                      +|.++.++.      .   +.   .    .  ...+|.++..  ++|+|+|++++|+ .+ +.++.++.||++++|++||
T Consensus       384 vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l  463 (490)
T 2bc0_A          384 TGLTLEKAKRLGFDAAVTEYTDNQKPEFIEHGNFPVTIKIVYDKDSRRILGAQMAAREDVSMGIHMFSLAIQEGVTIEKL  463 (490)
T ss_dssp             EECCHHHHHHTTCCEEEEEEEEESSCTTCCSSCCEEEEEEEEETTTCBEEEEEEEESSCCTTHHHHHHHHHHHTCBHHHH
T ss_pred             eeCCHHHHHHcCCceEEEEEecCCcccccCCCCceEEEEEEEECCCCEEEEEEEEcCcCHHHHHHHHHHHHHcCCCHHHH
Confidence            998764321      1   11   1    1  1123666655  5799999999998 54 4568899999999999999


Q ss_pred             HHHhhcCCCcccCcCCCCCCCCccccccc
Q 018416          290 AELETQGLGFALAVSQKPLPSTPVDGKTV  318 (356)
Q Consensus       290 ~~l~~~~~~yap~~~~~~~~~~~~~~~~~  318 (356)
                      .+++   +.|+|+|+++.++.+..++.+.
T Consensus       464 ~~~~---~~~~Pt~~e~~~~~~~~~~~~~  489 (490)
T 2bc0_A          464 ALTD---IFFLPHFNKPYNYITMAALGAK  489 (490)
T ss_dssp             HHSC---CCCCTTTCCTTCHHHHHHHTCC
T ss_pred             hhcc---eecCCCCCchhHHHHHHHHHhh
Confidence            8876   7999999999777666654443

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=2e-41  Score=331.42  Aligned_cols=286  Identities=28%  Similarity=0.448  Sum_probs=254.1

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCC-CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS-GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~-~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|+.+++||.+.++++++++.+|+.++++.+.  . +++++|||+|++|+|+|..|++.|.+||++++.++++++.++++
T Consensus       118 ~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~--~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~  195 (415)
T 3lxd_A          118 DPRRLSCVGADLAGVHAVRTKEDADRLMAELD--AGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEA  195 (415)
T ss_dssp             ECCCCBTTSSCCBTEECCCSHHHHHHHHHHHH--TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHH
T ss_pred             ccCCCCCCCccccCEEEEcCHHHHHHHHHHhh--hcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHH
Confidence            57888999999899999999999999998876  4 79999999999999999999999999999999999999878999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEEeccc
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRL  161 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~vd~~l  161 (356)
                      +.+.+.+.++++||++++++.+++++. +++.+..+++++|+++++|.||+++|.+|++++++.. +..+ ++|.||+++
T Consensus       196 ~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~  273 (415)
T 3lxd_A          196 LSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFC  273 (415)
T ss_dssp             HHHHHHHHHHHTTCEEEETCCEEEEEE-SSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHTTCCCS-SSEECCTTC
T ss_pred             HHHHHHHHHHhCCCEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhCCCCcC-CCEEECCCC
Confidence            999999999999999999999999987 5677778999999999999999999999999987654 5555 459999999


Q ss_pred             ccCCCCEEEEccccccCcccc-CcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc--e
Q 018416          162 QSSNSSVYAVGDVAAFPLKLL-GETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--E  238 (356)
Q Consensus       162 ~ts~~~VyAiGD~~~~~~~~~-g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~  238 (356)
                      +|+.|+|||+|||+..+...+ |.+.+++++..|..||+.||.||+|..  ..+..+|+||+++|++.++++|.+.+  +
T Consensus       274 ~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~  351 (415)
T 3lxd_A          274 RTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP--VPYKATPWFWSNQYDLKLQTVGLSTGHDN  351 (415)
T ss_dssp             BCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCC--CCCCCCCEEEEEETTEEEEEEECCTTCSE
T ss_pred             CcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCC--CCCCCCCeeEeeeCCcEEEEEeCCCCCCE
Confidence            999999999999999988777 888889999999999999999999876  47888999999999999999998653  5


Q ss_pred             EEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhcCC
Q 018416          239 VVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGL  297 (356)
Q Consensus       239 ~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~  297 (356)
                      .+..++.....|.++++++|+|+|+.++|. ......+..+|+.+.+++ ..+|.+|.+
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~~~~~  408 (415)
T 3lxd_A          352 AVLRGDPATRSFSVVYLKGGKVVALDCVNM-VKDYVQGKKLVEARAQIA-PEQLADAGV  408 (415)
T ss_dssp             EEEEEEGGGTEEEEEEEETTEEEEEEEESC-HHHHHHHHHHHHHTCCCC-HHHHTCTTS
T ss_pred             EEEEecCCCCeEEEEEEECCEEEEEEEECC-hHHHHHHHHHHHCCCCCC-HHHhcCCCC
Confidence            666777666679999999999999999994 666777888999998875 556664444

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=3.5e-41  Score=328.64  Aligned_cols=286  Identities=29%  Similarity=0.437  Sum_probs=254.0

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.++++++++++++..+++.+.  .+++++|||+|++|+|+|..|.+.|.+||++++.++++++.+++++
T Consensus       109 ~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~--~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~  186 (404)
T 3fg2_P          109 RNRMLDVPNASLPDVLYLRTLDESEVLRQRMP--DKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEI  186 (404)
T ss_dssp             EECCCCSTTTTSTTEECCSSHHHHHHHHHHGG--GCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHH
T ss_pred             CccCCCCCCCCCCcEEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHH
Confidence            57788999998899999999999999998886  5799999999999999999999999999999999999998789999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEEecccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  162 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~vd~~l~  162 (356)
                      .+.+.+.++++||++++++.+++++. +++.+..+++++|+++++|.||+|+|.+|++++++.. +..++ +|.||++++
T Consensus       187 ~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~-Gi~vd~~~~  264 (404)
T 3fg2_P          187 SSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAA-GIIVDQQLL  264 (404)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSS-SEEECTTSB
T ss_pred             HHHHHHHHHhCCcEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCCCC-CEEECCCcc
Confidence            99999999999999999999999987 4567778999999999999999999999999988654 55554 499999999


Q ss_pred             cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeeccc--ceEE
Q 018416          163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNV--GEVV  240 (356)
Q Consensus       163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~--~~~~  240 (356)
                      |+.|+|||+|||+..+.+.+|.+.+++++..|..||+.||.||+|..  .++..+|+||+++|++.++++|.+.  .+.+
T Consensus       265 t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~  342 (404)
T 3fg2_P          265 TSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDA--KPYDGYPWFWSDQGDDKLQIVGLTAGFDQVV  342 (404)
T ss_dssp             CSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCC--CCCCCCCEEEEEETTEEEEEEECCTTCCEEE
T ss_pred             cCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCC--CCCCCCCceEeEECCcEEEEEeCCCCCCEEE
Confidence            99999999999999988778888888999999999999999999876  5788899999999999999999865  3566


Q ss_pred             EEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhcCC
Q 018416          241 HYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGL  297 (356)
Q Consensus       241 ~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~  297 (356)
                      ..++.....|.++++++|+|+|+.++|. ......+..+|+.+.+++ ..+|.+|.+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~~~~~  397 (404)
T 3fg2_P          343 IRGSVAERSFSAFCYKAGKLIGIESVNR-AADHVFGRKILPLDKSVT-PEQAADLSF  397 (404)
T ss_dssp             EEEETTTTEEEEEEEETTEEEEEEEESC-HHHHHHHHHHTTTTCCCC-HHHHHCTTS
T ss_pred             EEecCCCCcEEEEEEECCEEEEEEEeCC-HHHHHHHHHHHHcCCCCC-HHHhcCCCC
Confidence            6777766679999999999999999994 667777888999888775 456654443

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=2.2e-41  Score=330.87  Aligned_cols=287  Identities=23%  Similarity=0.345  Sum_probs=251.3

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.++++++++.+|+.++++.+.  .+++++|||+|++|+|+|..|++.|.+||++++.++++++.+++++
T Consensus       110 ~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~  187 (410)
T 3ef6_A          110 RARTMALPGSQLPGVVTLRTYGDVQVLRDSWT--SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRI  187 (410)
T ss_dssp             EECCCCCTTTTSTTEECCCSHHHHHHHHHHCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHH
T ss_pred             cccCCCCCCccccceEEeccHHHHHHHHHHhc--cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHH
Confidence            47788999999899999999999999988775  6899999999999999999999999999999999999987789999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEEecccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  162 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~vd~~l~  162 (356)
                      .+.+.+.++++||++++++.+++++.  ++.+..+++++|+++++|.||+++|.+|++++++.. +..+ ++|.||++++
T Consensus       188 ~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~  264 (410)
T 3ef6_A          188 GAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGA  264 (410)
T ss_dssp             HHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSB
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCee
Confidence            99999999999999999999999985  335567889999999999999999999999987654 5555 5699999999


Q ss_pred             cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc--eEE
Q 018416          163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVV  240 (356)
Q Consensus       163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~  240 (356)
                      |+.|+|||+|||+..+... |.+.+++++..|..||+.||.||+|..  .+|..+|++|+++|++.++++|.+.+  +.+
T Consensus       265 t~~~~IyA~GD~a~~~~~~-g~~~~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~  341 (410)
T 3ef6_A          265 TLAKGVFAVGDVASWPLRA-GGRRSLETYMNAQRQAAAVAAAILGKN--VSAPQLPVSWTEIAGHRMQMAGDIEGPGDFV  341 (410)
T ss_dssp             CSSTTEEECGGGEEEEBTT-SSEECCCCHHHHHHHHHHHHHHHTTCC--CCCCBCCEEEEEETTEEEEEESCSSSSSEEE
T ss_pred             ECCCCEEEEEcceeccCCC-CCeeeechHHHHHHHHHHHHHHHcCCC--CCCCCCCeeEEEECCceEEEEcCCCCCCEEE
Confidence            9999999999999988765 777788899999999999999999976  57888999999999999999998653  666


Q ss_pred             EEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhcCCCcc
Q 018416          241 HYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFA  300 (356)
Q Consensus       241 ~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~ya  300 (356)
                      ..++.+...|.+++.++|+|+|+.++|. ......+..+|+.+..++ ..+|.++.+.+.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~i~~~~~~~-~~~l~~~~~~l~  399 (410)
T 3ef6_A          342 SRGMPGSGAALLFRLQERRIQAVVAVDA-PRDFALATRLVEARAAIE-PARLADLSNSMR  399 (410)
T ss_dssp             EESCTTSSSEEEEEEETTEEEEEEEESC-HHHHHHHHHHHHHTCBCC-HHHHHCTTSCGG
T ss_pred             EEeeCCCCeEEEEEEECCEEEEEEEECC-hHHHHHHHHHHhCCCCCC-HHHhcCCCCCHH
Confidence            7777766679999999999999999995 666777888999888775 456665544433

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=2.7e-40  Score=322.91  Aligned_cols=277  Identities=26%  Similarity=0.408  Sum_probs=239.0

Q ss_pred             CCccCCC-CCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            4 KLEEFGL-SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~~i-pG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|+.+++ ||.+ ++++++++.+|+.++++.+.  .+++++|||+|++|+|+|..|+++|.+||++++.++++++.++++
T Consensus       112 ~~~~~~i~~G~~-~~v~~~~~~~~~~~l~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~  188 (408)
T 2gqw_A          112 APRALPTLQGAT-MPVHTLRTLEDARRIQAGLR--PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPAT  188 (408)
T ss_dssp             EECCCGGGTTCS-SCEEECCSHHHHHHHHTTCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHH
T ss_pred             CCCCCCccCCCC-CcEEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHH
Confidence            5777888 9987 89999999999999877664  579999999999999999999999999999999999998768999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEEeccc
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRL  161 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~vd~~l  161 (356)
                      +.+.+.+.|+++||++++++++++++   ++   .+++++|+++++|.||+++|++|++++++.. +..++ +|.||++|
T Consensus       189 ~~~~l~~~l~~~GV~i~~~~~v~~i~---~~---~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~-gi~Vd~~~  261 (408)
T 2gqw_A          189 LADFVARYHAAQGVDLRFERSVTGSV---DG---VVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDD-GIFVDAYG  261 (408)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEEEE---TT---EEEETTSCEEECSEEEECSCEEECCHHHHHHTCCBSS-SEECCTTC
T ss_pred             HHHHHHHHHHHcCcEEEeCCEEEEEE---CC---EEEECCCCEEEcCEEEECcCCCccHHHHHhCCCCCCC-CEEECCCC
Confidence            99999999999999999999999997   23   5678899999999999999999999987654 55554 49999999


Q ss_pred             ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeec-ccceEE
Q 018416          162 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD-NVGEVV  240 (356)
Q Consensus       162 ~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~-~~~~~~  240 (356)
                      ||+.|+|||+|||+..+.+.+|.+.+++++..|..||+.+|.||++... ..+..+|++|+++|++.++++|. ...+.+
T Consensus       262 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~  340 (408)
T 2gqw_A          262 RTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA-PGYAELPWYWSDQGALRIQVAGLASGDEEI  340 (408)
T ss_dssp             BCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTS-CCCCCCCEEEEEETTEEEEEEECSCCSEEE
T ss_pred             ccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCC-CcCCCCCeEEEEECCceEEEECCCCCCEEE
Confidence            9999999999999998877677777778999999999999999998753 26778999999999999999997 223455


Q ss_pred             EEccCC--CCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHh
Q 018416          241 HYGNFS--GTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELE  293 (356)
Q Consensus       241 ~~g~~~--~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~  293 (356)
                      ..++..  ..+|.+++.++|+|+|++++|. ..++..+..+|+.+.+++. .+|.
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~-~~~~~~~~~~i~~~~~~~~-~~l~  393 (408)
T 2gqw_A          341 VRGEVSLDAPKFTLIELQKGRIVGATCVNN-ARDFAPLRRLLAVGAKPDR-AALA  393 (408)
T ss_dssp             EESCCCSSSCCEEEEEEETTEEEEEEEESC-HHHHHHHHHHHHTTCCCCH-HHHH
T ss_pred             EEccCCCCCCeEEEEEEeCCEEEEEEEECC-hHHHHHHHHHHHCCCCCCh-HHhc
Confidence            556554  4568888889999999999996 4567888999999998864 3444

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=1.4e-41  Score=335.70  Aligned_cols=304  Identities=24%  Similarity=0.278  Sum_probs=250.2

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+.++++++++++++.++++.+....+++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++
T Consensus       114 ~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~  193 (447)
T 1nhp_A          114 VPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEF  193 (447)
T ss_dssp             EECCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHH
T ss_pred             CcCCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHH
Confidence            57778899998889999999999999988876446899999999999999999999999999999999999986689999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhccccc-ccCcEEEecccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQ  162 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~I~vd~~l~  162 (356)
                      .+.+.+.+++.||++++++++++++.+  +.+..+.+ +++++++|.|++|+|++|++.+++..+.. .+|+|.||++||
T Consensus       194 ~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~~~~  270 (447)
T 1nhp_A          194 TDVLTEEMEANNITIATGETVERYEGD--GRVQKVVT-DKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMR  270 (447)
T ss_dssp             HHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEE-SSCEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCB
T ss_pred             HHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEEEEEE-CCCEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECcccc
Confidence            999999999999999999999999852  44434555 56789999999999999999987665555 568899999999


Q ss_pred             cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE--
Q 018416          163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV--  240 (356)
Q Consensus       163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~--  240 (356)
                      |+.|+|||+|||+..+...+|.+.+++++..|.+||+.+|.||++... ......+++++.++++.++++|.++.++.  
T Consensus       271 t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~  349 (447)
T 1nhp_A          271 TSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK-PFPGVQGSSGLAVFDYKFASTGINEVMAQKL  349 (447)
T ss_dssp             CSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHHH
T ss_pred             CCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCCC-CCCCccccEEEEECCeeeEEecCCHHHHHHc
Confidence            999999999999998766666666678899999999999999998542 22334678889999999999998764321  


Q ss_pred             -------EEccC--------CCCceEEEEe--eCCeEEEEEEeCCC-HH-HHHHHHHHHHcCCCcCcHHHHhhcCCCccc
Q 018416          241 -------HYGNF--------SGTTFGAYWV--NKGRLVGSFLEGGT-KE-EYEAIAKATRLQPVVEDLAELETQGLGFAL  301 (356)
Q Consensus       241 -------~~g~~--------~~~~~~~~~~--~~g~ilGa~~vg~~-~~-~~~~~a~ai~~~~~~~dl~~l~~~~~~yap  301 (356)
                             .+.+.        +..+|.+++.  ++|+|+|+|++|+. +. .++.++.+|++++|++||.+++   +.|+|
T Consensus       350 g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~---~~~~P  426 (447)
T 1nhp_A          350 GKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYAD---FFFQP  426 (447)
T ss_dssp             TCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCC---CCCCT
T ss_pred             CCceEEEEEEcCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcc---eecCC
Confidence                   11111        1123666665  37999999999987 54 4677899999999999998776   78999


Q ss_pred             CcCCCCCCCCccc
Q 018416          302 AVSQKPLPSTPVD  314 (356)
Q Consensus       302 ~~~~~~~~~~~~~  314 (356)
                      ++++.-.+.+..+
T Consensus       427 t~~e~~~~~~~aa  439 (447)
T 1nhp_A          427 AFDKPWNIINTAA  439 (447)
T ss_dssp             TTCCSSCHHHHHH
T ss_pred             CCCCcccHHHHHH
Confidence            9998866554443

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=8e-41  Score=333.26  Aligned_cols=302  Identities=22%  Similarity=0.317  Sum_probs=250.7

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.++++++++.+++.++++.+....+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus       151 ~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~  229 (480)
T 3cgb_A          151 RPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI-YDGDM  229 (480)
T ss_dssp             EECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS-SCHHH
T ss_pred             cccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc-CCHHH
Confidence            46778899988789999999999999988876546899999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEeccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL  161 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~l  161 (356)
                      .+.+.+.+++.||++++++++++++.  ++.+..+.++ +.++++|.||+|+|++|++++++.. +.. ++|+|.||++|
T Consensus       230 ~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~v~~v~~~-~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~  306 (480)
T 3cgb_A          230 AEYIYKEADKHHIEILTNENVKAFKG--NERVEAVETD-KGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYM  306 (480)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEE--SSBEEEEEET-TEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTS
T ss_pred             HHHHHHHHHHcCcEEEcCCEEEEEEc--CCcEEEEEEC-CCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCc
Confidence            99999999999999999999999986  3445456554 5689999999999999999887654 665 57899999999


Q ss_pred             ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCC-CCCCeEEEEecCceEEEeecccceEE
Q 018416          162 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKF-DYLPFFYSRVFTLSWQFYGDNVGEVV  240 (356)
Q Consensus       162 ~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~~~~~  240 (356)
                      ||+.|+|||+|||+..+...+|.+.+++++..|..||+.||.||++...  .+ +..++.++.++++.++++|+++.++.
T Consensus       307 ~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~--~~~~~~~~~~~~~~~~~~~~vG~~~~~a~  384 (480)
T 3cgb_A          307 QTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRR--AFKGTLGTGIIKFMNLTLARTGLNEKEAK  384 (480)
T ss_dssp             BCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCC--CCCCBCCCEEEEETTEEEEEEECCHHHHH
T ss_pred             cCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCCCc--cCCCccceeEEEECCcEEEEeCCCHHHHH
Confidence            9999999999999988776667666678899999999999999998542  33 34456789999999999998764321


Q ss_pred             ---------EE-cc-C------CCCceEEEEe--eCCeEEEEEEeCCC-HHH-HHHHHHHHHcCCCcCcHHHHhhcCCCc
Q 018416          241 ---------HY-GN-F------SGTTFGAYWV--NKGRLVGSFLEGGT-KEE-YEAIAKATRLQPVVEDLAELETQGLGF  299 (356)
Q Consensus       241 ---------~~-g~-~------~~~~~~~~~~--~~g~ilGa~~vg~~-~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~y  299 (356)
                               .+ .. .      ...+|.+++.  ++|+|+|++++|+. +.+ ++.++.||++++|++||.++.   +.|
T Consensus       385 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~---~~~  461 (480)
T 3cgb_A          385 GLHIPYKTVKVDSTNMAGYYPNAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVD---LSY  461 (480)
T ss_dssp             HTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCC---CCC
T ss_pred             HcCCceEEEEEecCCcccccCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcc---ccc
Confidence                     11 11 0      1123666665  58999999999987 654 677899999999999998876   789


Q ss_pred             ccCcCCCCCCCCccc
Q 018416          300 ALAVSQKPLPSTPVD  314 (356)
Q Consensus       300 ap~~~~~~~~~~~~~  314 (356)
                      +|++++..++.+..+
T Consensus       462 ~Pt~~e~~~~~~~a~  476 (480)
T 3cgb_A          462 APPYNSVWDPIQQAA  476 (480)
T ss_dssp             CTTTCCSSCHHHHHH
T ss_pred             CCCCCCchhHHHHHH
Confidence            999999876655444

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=8e-40  Score=321.85  Aligned_cols=283  Identities=27%  Similarity=0.476  Sum_probs=241.7

Q ss_pred             CCccCCCCCCCCCC---eEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSDAEN---VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~~~---v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+.++   ++++++.+|+.++++.+.  .+++++|||+|++|+|+|..|+++|.+||++++.++++++.++
T Consensus       113 ~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~--~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~  190 (431)
T 1q1r_A          113 RPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLI--ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTA  190 (431)
T ss_dssp             EECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSC
T ss_pred             CccCCCCCCcccCCCceEEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhh
Confidence            57778889987666   999999999999988764  5899999999999999999999999999999999999987789


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEc-CCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEEe
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVD-SNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVT  158 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~vd  158 (356)
                      +++.+.+.+.+++.||++++++++++++.+ +++.+..+++++|+++++|.||+++|++|++++++.. +..+ ++|.||
T Consensus       191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~gi~Vd  269 (431)
T 1q1r_A          191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVIN  269 (431)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SSEECC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCC-CCEEEC
Confidence            999999999999999999999999999862 3456667888999999999999999999999987654 5555 459999


Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc-
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-  237 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-  237 (356)
                      ++|||+.|+|||+|||+..+.+.+|.+.+++++..|..||+.+|.||+|..  ..+..+|++|+++|++.++++|.+++ 
T Consensus       270 ~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~  347 (431)
T 1q1r_A          270 EHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKV--PRDEAAPWFWSDQYEIGLKMVGLSEGY  347 (431)
T ss_dssp             TTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCC--CCCCCCCEEEEEETTEEEEEEECCTTC
T ss_pred             CCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCC--CCCCCCCeEEEEECCceEEEEeCCCCC
Confidence            999999999999999999887777877788899999999999999999875  46778999999999999999998753 


Q ss_pred             -eEEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHh
Q 018416          238 -EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELE  293 (356)
Q Consensus       238 -~~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~  293 (356)
                       +.+..++.+...|.+++.++|+|+|++++|.. .....+..+|..+.++. ..+|.
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~-~~~~~~~~~i~~~~~~~-~~~l~  402 (431)
T 1q1r_A          348 DRIIVRGSLAQPDFSVFYLQGDRVLAVDTVNRP-VEFNQSKQIITDRLPVE-PNLLG  402 (431)
T ss_dssp             SEEEEEEETTTTEEEEEEEETTEEEEEEEESCH-HHHHHHHHHHHTTCCCC-HHHHT
T ss_pred             CEEEEEccCCCCeEEEEEEeCCEEEEEEEECCh-HHHHHHHHHHHCCCCCC-HHHhh
Confidence             45566665555688888899999999999964 44555667777777664 34444

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=6.3e-39  Score=311.04  Aligned_cols=256  Identities=18%  Similarity=0.280  Sum_probs=222.1

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+  +++++++++|+.++++.+.  ++++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++
T Consensus       115 ~p~~p~i~G~~--~v~~~~~~~d~~~l~~~l~--~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~  190 (385)
T 3klj_A          115 IANKIKVPHAD--EIFSLYSYDDALKIKDECK--NKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDG  190 (385)
T ss_dssp             EECCCCCTTCS--CEECCSSHHHHHHHHHHHH--HHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHH
T ss_pred             CcCCCCCCCCC--CeEEeCCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHH
Confidence            57888999987  8999999999999998886  4789999999999999999999999999999999999998789999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEEecccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  162 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~vd~~l~  162 (356)
                      .+.+.+.++++||++++++.++++               |+++++|.||+++|++|++++++.. +..+ ++|.||++|+
T Consensus       191 ~~~~~~~l~~~gV~~~~~~~v~~i---------------g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~-~gi~vd~~~~  254 (385)
T 3klj_A          191 GLFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRSSCVITAVGVKPNLDFIKDTEIASK-RGILVNDHME  254 (385)
T ss_dssp             HHHHHHHHHTTTCEEECSCCGGGC---------------HHHHHHSEEEECCCEEECCGGGTTSCCCBS-SSEEECTTCB
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEc---------------CeEEecCeEEECcCcccChhhhhhcCCCcC-CCEEECCCcc
Confidence            999999999999999999888665               5679999999999999999988764 5555 4599999999


Q ss_pred             cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCC-CCeEEEEecCceEEEeecccce---
Q 018416          163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDY-LPFFYSRVFTLSWQFYGDNVGE---  238 (356)
Q Consensus       163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~---  238 (356)
                      |+.|+|||+|||+..+...      ..++..|..||+.||.||+|...  .+.. +|++|+++|++.++++|.++.+   
T Consensus       255 t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~~aa~~i~g~~~--~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  326 (385)
T 3klj_A          255 TSIKDIYACGDVAEFYGKN------PGLINIANKQGEVAGLNACGEDA--SYSEIIPSPILKVSGISIISCGDIENNKPS  326 (385)
T ss_dssp             CSSTTEEECGGGEEETTBC------CCCHHHHHHHHHHHHHHHTTCCC--CCCCCCCCCEEEETTEEEEEESCCTTCCCS
T ss_pred             cCCCCEEEEEeeEecCCCc------ccHHHHHHHHHHHHHHHhcCCCc--CCCCCCCcEEEEeCCCcEEEEcCCCCCCCe
Confidence            9999999999999876432      25789999999999999998763  4544 7999999999999999987643   


Q ss_pred             EEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcH
Q 018416          239 VVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDL  289 (356)
Q Consensus       239 ~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl  289 (356)
                      .+.. +.....|.+++.++|+|+|++++|... ....+..+|+++.++++|
T Consensus       327 ~~~~-~~~~~~~~~~~~~~~~l~g~~~~g~~~-~~~~~~~~i~~~~~~~~~  375 (385)
T 3klj_A          327 KVFR-STQEDKYIVCMLKENKIDAAAVIGDVS-LGTKLKKAIDSSKSFDNI  375 (385)
T ss_dssp             EEEE-EECSSCEEEEEEETTEEEEEEEESCHH-HHHHHHHHHHTTCBCSCC
T ss_pred             EEEE-ECCCCeEEEEEEECCEEEEEEEECCcH-HHHHHHHHHHcCCCcccc
Confidence            3333 444556999999999999999999644 445688999999999886

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=1.3e-37  Score=313.19  Aligned_cols=282  Identities=22%  Similarity=0.295  Sum_probs=225.7

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+.+++++.   +++.   +.++..++++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++
T Consensus       185 ~p~~p~i~G~~~~~v~~~---~~~~---~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~  257 (523)
T 1mo9_A          185 GPGTLDVPGVNAKGVFDH---ATLV---EELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNET  257 (523)
T ss_dssp             ECCCCCSTTTTSBTEEEH---HHHH---HHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHH
T ss_pred             CCCCCCCCCcccCcEeeH---HHHH---HHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHH
Confidence            577788999887778753   3332   1233323499999999999999999999999999999999999997 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcE--EEEEeCCCc-EEecCeEEEecCCCCCch-hhhcc-ccc-ccCcEEE
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV--VAVNLRDGN-RLPTDMVVVGIGIRPNTS-LFEGQ-LTL-EKGGIKV  157 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v--~~v~~~~g~-~i~~D~vi~a~G~~p~~~-l~~~~-l~~-~~g~I~v  157 (356)
                      .+.+.+.|+++||+++++++|++++.++++.+  ..+++++|+ ++++|.||+|+|++|+++ +++.. +.. ++|+|.|
T Consensus       258 ~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~V  337 (523)
T 1mo9_A          258 RAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLV  337 (523)
T ss_dssp             HHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCC
T ss_pred             HHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEE
Confidence            99999999999999999999999987445543  457788887 899999999999999998 56543 666 5788999


Q ss_pred             ecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc
Q 018416          158 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG  237 (356)
Q Consensus       158 d~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~  237 (356)
                      |++|||+.|+|||+|||+..+          .++..|..||+.||.||++......+..+|+++  +++..++++|+++.
T Consensus       338 d~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~--~~~~~~a~vG~~e~  405 (523)
T 1mo9_A          338 NEYLQTSVPNVYAVGDLIGGP----------MEMFKARKSGCYAARNVMGEKISYTPKNYPDFL--HTHYEVSFLGMGEE  405 (523)
T ss_dssp             CTTSBCSSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEE--ESSSEEEEEECCHH
T ss_pred             CCCCccCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--ECCCceEEEeCCHH
Confidence            999999999999999999754          356789999999999999865333466788654  57788999998875


Q ss_pred             eE-------EE----Ecc-----------------------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHH
Q 018416          238 EV-------VH----YGN-----------------------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKAT  280 (356)
Q Consensus       238 ~~-------~~----~g~-----------------------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai  280 (356)
                      ++       ..    +.+                       .+..+|.|+..  ++|+|+|+|++|+.+.+ ++.++.||
T Consensus       406 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai  485 (523)
T 1mo9_A          406 EARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLI  485 (523)
T ss_dssp             HHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHH
T ss_pred             HHHhCCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence            32       11    111                       11124777666  58999999999987554 68899999


Q ss_pred             HcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          281 RLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       281 ~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      ++++|++||.+++  .+.++|++++.
T Consensus       486 ~~~~t~~~l~~~~--~~~~~Pt~~e~  509 (523)
T 1mo9_A          486 KQGLTVDELGDMD--ELFLNPTHFIQ  509 (523)
T ss_dssp             HTTCBHHHHHTSC--CCSSCSCCHHH
T ss_pred             HCCCCHHHHHhCC--cceECCCHHHH
Confidence            9999999998872  15778888765

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=7.8e-38  Score=310.24  Aligned_cols=275  Identities=20%  Similarity=0.232  Sum_probs=217.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.. +   .+..++..+.     ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus       145 ~~~~~~~~g~~~~-~---~~~~~~~~~~-----~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~  214 (464)
T 2a8x_A          145 STRLVPGTSLSAN-V---VTYEEQILSR-----ELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN-EDADV  214 (464)
T ss_dssp             EECCCTTCCCBTT-E---ECHHHHHTCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHH
T ss_pred             CCCCCCCCCCCce-E---EecHHHhhcc-----ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHH
Confidence            4666778886543 3   3555554431     14799999999999999999999999999999999999996 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CC--cEEecCeEEEecCCCCCchh--hhc-cccc-ccCcEE
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGIK  156 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D~vi~a~G~~p~~~l--~~~-~l~~-~~g~I~  156 (356)
                      .+.+.+.|+++||++++++++++++.++++  ..+.+. +|  +++++|.|++++|++||+++  ++. ++.. ++|+|.
T Consensus       215 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~  292 (464)
T 2a8x_A          215 SKEIEKQFKKLGVTILTATKVESIADGGSQ--VTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIG  292 (464)
T ss_dssp             HHHHHHHHHHHTCEEECSCEEEEEEECSSC--EEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBC
T ss_pred             HHHHHHHHHHcCCEEEeCcEEEEEEEcCCe--EEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEe
Confidence            999999999999999999999999874333  345554 56  67999999999999999986  444 3665 468899


Q ss_pred             EecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC-CCCC-CCCCCCCeEEEEecCceEEEeec
Q 018416          157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME-PDKT-DKFDYLPFFYSRVFTLSWQFYGD  234 (356)
Q Consensus       157 vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g-~~~~-~~~~~~p~~~~~~~~~~~~~~G~  234 (356)
                      ||++|||+.|+|||+|||+..+          .++..|.+||+.||.||++ .... ..+..+|+  ..+++..++++|+
T Consensus       293 vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~--~~~~~~~~a~vG~  360 (464)
T 2a8x_A          293 VDDYMRTNVGHIYAIGDVNGLL----------QLAHVAEAQGVVAAETIAGAETLTLGDHRMLPR--ATFCQPNVASFGL  360 (464)
T ss_dssp             CCTTSBCSSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCE--EECSSSEEEEEEC
T ss_pred             ECcCCccCCCCEEEeECcCCCc----------cCHHHHHHHHHHHHHHhcCCCCcccCCCCCCCE--EEECCCCeEEEcC
Confidence            9999999999999999999754          3577899999999999998 4432 23555674  4678889999998


Q ss_pred             ccceEE------EEc------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHh
Q 018416          235 NVGEVV------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE  293 (356)
Q Consensus       235 ~~~~~~------~~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~  293 (356)
                      ++.++.      ..+            ..+..+|.+++.  ++|+|+|+|++|+.+.+ ++.++.||++++|++||.++.
T Consensus       361 ~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~  440 (464)
T 2a8x_A          361 TEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNV  440 (464)
T ss_dssp             CHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSC
T ss_pred             CHHHHHhcCCCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCc
Confidence            875321      110            112345878776  48999999999987654 678999999999999998755


Q ss_pred             hcCCCcccCcCCC
Q 018416          294 TQGLGFALAVSQK  306 (356)
Q Consensus       294 ~~~~~yap~~~~~  306 (356)
                          .++|++++.
T Consensus       441 ----~~~Pt~~e~  449 (464)
T 2a8x_A          441 ----HTHPTMSEA  449 (464)
T ss_dssp             ----CCTTCTTHH
T ss_pred             ----cCCCChHHH
Confidence                566888765

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=1.2e-37  Score=309.75  Aligned_cols=278  Identities=22%  Similarity=0.259  Sum_probs=220.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+.++++   +.+++.++    .. .+++++|||+|++|+|+|..|+++|.+||++++.++++++.+|+++
T Consensus       151 ~p~~p~i~g~~~~~v~---t~~~~~~~----~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~  222 (474)
T 1zmd_A          151 EVTPFPGITIDEDTIV---SSTGALSL----KK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEI  222 (474)
T ss_dssp             EECCCTTCCCCSSSEE---CHHHHTTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHH
T ss_pred             CCCCCCCCCCCcCcEE---cHHHHhhc----cc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHH
Confidence            4677888888755665   44444332    22 4799999999999999999999999999999999999994489999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE-----eCCCcEEecCeEEEecCCCCCchh--hhc-cccc-ccCc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN-----LRDGNRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGG  154 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~-----~~~g~~i~~D~vi~a~G~~p~~~l--~~~-~l~~-~~g~  154 (356)
                      .+.+.+.|+++||++++++++++++.++++.+ .++     ..+++++++|.|++++|++||+++  ++. ++.. .+|+
T Consensus       223 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~  301 (474)
T 1zmd_A          223 SKNFQRILQKQGFKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR  301 (474)
T ss_dssp             HHHHHHHHHHTTCEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSC
T ss_pred             HHHHHHHHHHCCCEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCC
Confidence            99999999999999999999999987443323 344     346678999999999999999986  443 3665 4688


Q ss_pred             EEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeec
Q 018416          155 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD  234 (356)
Q Consensus       155 I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~  234 (356)
                      |.||++|||+.|+|||+|||+..+          .++..|..||+.||.||++......+..+|++  .+++..++++|+
T Consensus       302 i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~--~~~~~~~a~vG~  369 (474)
T 1zmd_A          302 IPVNTRFQTKIPNIYAIGDVVAGP----------MLAHKAEDEGIICVEGMAGGAVHIDYNCVPSV--IYTHPEVAWVGK  369 (474)
T ss_dssp             CCCCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTCCCCCCGGGCCEE--ECSSSEEEEEEC
T ss_pred             EEECcCCccCCCCEEEeeecCCCC----------ccHHHHHHHHHHHHHHhcCCCCcCCCCCCCEE--EECCCCeEEEeC
Confidence            999999999999999999999754          35778999999999999986533445567754  467889999999


Q ss_pred             ccceEE------EE-c-----------cCCCCceEEEEee--CCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHh
Q 018416          235 NVGEVV------HY-G-----------NFSGTTFGAYWVN--KGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE  293 (356)
Q Consensus       235 ~~~~~~------~~-g-----------~~~~~~~~~~~~~--~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~  293 (356)
                      ++.++.      .. .           ..+..+|.+++.+  +|+|+|++++|+.+.+ ++.++.||++++|++||.++.
T Consensus       370 ~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~  449 (474)
T 1zmd_A          370 SEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVC  449 (474)
T ss_dssp             CHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSC
T ss_pred             CHHHHHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc
Confidence            875421      11 0           1123458787764  8999999999988655 578899999999999998855


Q ss_pred             hcCCCcccCcCCC
Q 018416          294 TQGLGFALAVSQK  306 (356)
Q Consensus       294 ~~~~~yap~~~~~  306 (356)
                          .++|++++.
T Consensus       450 ----~~~Pt~~e~  458 (474)
T 1zmd_A          450 ----HAHPTLSEA  458 (474)
T ss_dssp             ----CCTTCTHHH
T ss_pred             ----CCCCCHHHH
Confidence                566888765

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=6.5e-38  Score=312.38  Aligned_cols=273  Identities=17%  Similarity=0.219  Sum_probs=216.9

Q ss_pred             CccCC-CCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            5 LEEFG-LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         5 p~~~~-ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      |..++ +| .+ ++++   +.+++..+    . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus       160 p~~~~~i~-~~-~~v~---~~~~~~~~----~-~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~  228 (482)
T 1ojt_A          160 VTKLPFIP-ED-PRII---DSSGALAL----K-EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDL  228 (482)
T ss_dssp             ECCCSSCC-CC-TTEE---CHHHHTTC----C-CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHH
T ss_pred             CCCCCCCC-cc-CcEE---cHHHHhcc----c-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-cCHHH
Confidence            44444 55 33 2444   55555443    1 14799999999999999999999999999999999999997 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC----CcEEecCeEEEecCCCCCchh--hhcc-ccc-ccCcE
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD----GNRLPTDMVVVGIGIRPNTSL--FEGQ-LTL-EKGGI  155 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~----g~~i~~D~vi~a~G~~p~~~l--~~~~-l~~-~~g~I  155 (356)
                      .+.+.+.|+++||++++++++++++.++++  ..+++.+    |+++++|.|++++|++||+++  ++.. +.. .+|+|
T Consensus       229 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i  306 (482)
T 1ojt_A          229 VKVWQKQNEYRFDNIMVNTKTVAVEPKEDG--VYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFI  306 (482)
T ss_dssp             HHHHHHHHGGGEEEEECSCEEEEEEEETTE--EEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCC
T ss_pred             HHHHHHHHHhcCCEEEECCEEEEEEEcCCe--EEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCE
Confidence            999999999999999999999999864332  4566666    778999999999999999987  3443 665 45889


Q ss_pred             EEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecc
Q 018416          156 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDN  235 (356)
Q Consensus       156 ~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~  235 (356)
                      .||++|||+.|+|||+|||+..+          .++..|.+||+.||.||++......+..+|  +..++++.++++|++
T Consensus       307 ~vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~p--~~~~~~~~~a~vG~t  374 (482)
T 1ojt_A          307 EVDKQMRTNVPHIYAIGDIVGQP----------MLAHKAVHEGHVAAENCAGHKAYFDARVIP--GVAYTSPEVAWVGET  374 (482)
T ss_dssp             CCCTTSBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCCCCCCCCCCC--EEECSSSCEEEEECC
T ss_pred             eeCCCcccCCCCEEEEEcccCCC----------ccHHHHHHHHHHHHHHHcCCCccCCCCCCC--EEEEcCCCeEEEeCC
Confidence            99999999999999999999754          357789999999999999865333455566  456788899999998


Q ss_pred             cceEE------EEc------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhh
Q 018416          236 VGEVV------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELET  294 (356)
Q Consensus       236 ~~~~~------~~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~  294 (356)
                      +.++.      ..+            ..+..+|.+++.  ++|+|+|+|++|+.+.+ ++.++.||++++|++||.++. 
T Consensus       375 e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~-  453 (482)
T 1ojt_A          375 ELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTI-  453 (482)
T ss_dssp             HHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC-
T ss_pred             HHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc-
Confidence            75321      111            112235878776  68999999999988655 578899999999999998765 


Q ss_pred             cCCCcccCcCCC
Q 018416          295 QGLGFALAVSQK  306 (356)
Q Consensus       295 ~~~~yap~~~~~  306 (356)
                         .++|++++.
T Consensus       454 ---~~~Pt~~e~  462 (482)
T 1ojt_A          454 ---HPHPTLGES  462 (482)
T ss_dssp             ---CCSSSSTTH
T ss_pred             ---cCCCCHHHH
Confidence               788998865

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=6.1e-38  Score=313.84  Aligned_cols=276  Identities=19%  Similarity=0.213  Sum_probs=222.5

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+..++++..+..+   +    . ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. +|+++
T Consensus       155 ~p~~p~i~g~~~~~v~~~~~~~~---~----~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~  225 (499)
T 1xdi_A          155 SPRILPSAQPDGERILTWRQLYD---L----D-ALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADA  225 (499)
T ss_dssp             EECCCGGGCCCSSSEEEGGGGGG---C----S-SCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHH
T ss_pred             CCCCCCCCCCCcCcEEehhHhhh---h----h-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHH
Confidence            46677888987777876554322   1    1 24799999999999999999999999999999999999997 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchh--hhc-cccc-ccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l--~~~-~l~~-~~g~I~vd~  159 (356)
                      .+.+.+.|+++||+++++++|++++.++ +.+ .+++.+|+++++|.||+|+|++||+++  ++. ++.. ++|+|.||+
T Consensus       226 ~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~  303 (499)
T 1xdi_A          226 ALVLEESFAERGVRLFKNARAASVTRTG-AGV-LVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDR  303 (499)
T ss_dssp             HHHHHHHHHHTTCEEETTCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCS
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEeC-CEE-EEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECC
Confidence            9999999999999999999999998743 333 577788899999999999999999987  444 3665 458899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEEEecCceEEEeecccce
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD-KTDKFDYLPFFYSRVFTLSWQFYGDNVGE  238 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~~~~~~G~~~~~  238 (356)
                      +|||+.|+|||+|||+..+          .++..|..||+.+|.||+|.. ....+..+|+  ..+++..++++|+++.+
T Consensus       304 ~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~  371 (499)
T 1xdi_A          304 VSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGEGVSPIRLRTVAA--TVFTRPEIAAVGVPQSV  371 (499)
T ss_dssp             SSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEE--EECSSSEEEEEESCHHH
T ss_pred             CcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCCCccCCCCCCcE--EEEecCCceEeCCCHHH
Confidence            9999999999999999754          356789999999999999863 2234555665  55788999999998754


Q ss_pred             EE------EEc------------cCCCCceEEEEee--CCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCC
Q 018416          239 VV------HYG------------NFSGTTFGAYWVN--KGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGL  297 (356)
Q Consensus       239 ~~------~~g------------~~~~~~~~~~~~~--~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~  297 (356)
                      +.      ..+            ..+..+|.+++.+  +|+|+|++++|+.+.+ ++.++.||++++|++||.++.    
T Consensus       372 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~----  447 (499)
T 1xdi_A          372 IDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTL----  447 (499)
T ss_dssp             HHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSB----
T ss_pred             HHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhccc----
Confidence            21      100            1122357777764  7999999999998765 578899999999999998755    


Q ss_pred             CcccCcCCC
Q 018416          298 GFALAVSQK  306 (356)
Q Consensus       298 ~yap~~~~~  306 (356)
                      .++|++++.
T Consensus       448 ~~~Pt~~e~  456 (499)
T 1xdi_A          448 AVYPSLSGS  456 (499)
T ss_dssp             CCSSSTHHH
T ss_pred             ccCCCchHH
Confidence            566888775

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-37  Score=309.17  Aligned_cols=276  Identities=16%  Similarity=0.202  Sum_probs=218.6

Q ss_pred             CCccC-CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            4 KLEEF-GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~-~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|+.+ ++||.+  .++   +.++...+    . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|++
T Consensus       159 ~p~~p~~i~g~~--~~~---~~~~~~~l----~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~  227 (479)
T 2hqm_A          159 KAIFPENIPGFE--LGT---DSDGFFRL----E-EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-FDEC  227 (479)
T ss_dssp             EECCCTTSTTGG--GSB---CHHHHHHC----S-SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHH
T ss_pred             CCCCCCCCCCcc--ccc---chHHHhcc----c-ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-cCHH
Confidence            46667 788874  232   34444332    2 25799999999999999999999999999999999999987 8999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCCCCCchh-hhc-cccc-ccCcEEEe
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTSL-FEG-QLTL-EKGGIKVT  158 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~l-~~~-~l~~-~~g~I~vd  158 (356)
                      +.+.+.+.|++.||++++++++++++.++++.+..+++++| +++++|.||+|+|++||+.| ++. ++.. ++|+|.||
T Consensus       228 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd  307 (479)
T 2hqm_A          228 IQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIAD  307 (479)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCC
T ss_pred             HHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeEC
Confidence            99999999999999999999999998744453456788899 78999999999999999976 444 3666 57899999


Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC---C-CCCCCCCCeEEEEecCceEEEeec
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD---K-TDKFDYLPFFYSRVFTLSWQFYGD  234 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~---~-~~~~~~~p~~~~~~~~~~~~~~G~  234 (356)
                      ++|||+.|+|||+|||+..+          .++..|.+||+.+|.||++..   . ...+..+|+.  .+++..++++|+
T Consensus       308 ~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~--~~~~~~~~~vGl  375 (479)
T 2hqm_A          308 EYQNTNVPNIYSLGDVVGKV----------ELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSV--IFSHPEAGSIGI  375 (479)
T ss_dssp             TTCBCSSTTEEECGGGTTSS----------CCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEE--ECCSSCEEEEEC
T ss_pred             CCCccCCCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeE--EECCCCeEEEeC
Confidence            99999999999999997643          457789999999999999754   2 1344557753  346788999998


Q ss_pred             ccceEE--------EEc------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHH
Q 018416          235 NVGEVV--------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAE  291 (356)
Q Consensus       235 ~~~~~~--------~~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~  291 (356)
                      ++.++.        ...            .....+|.|+..  ++|+|+|+|++|+.+.+ ++.++.||++++|++||.+
T Consensus       376 ~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~  455 (479)
T 2hqm_A          376 SEKEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDN  455 (479)
T ss_dssp             CHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHT
T ss_pred             CHHHHHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence            764321        111            111234777665  57999999999988665 5778999999999999987


Q ss_pred             HhhcCCCcccCcCCC
Q 018416          292 LETQGLGFALAVSQK  306 (356)
Q Consensus       292 l~~~~~~yap~~~~~  306 (356)
                      +.    .++|++++.
T Consensus       456 ~~----~~hPt~~e~  466 (479)
T 2hqm_A          456 CV----AIHPTSAEE  466 (479)
T ss_dssp             SC----CCSSCSGGG
T ss_pred             Cc----CCCCChHHH
Confidence            65    788888876

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=2.5e-37  Score=306.91  Aligned_cols=276  Identities=20%  Similarity=0.242  Sum_probs=219.1

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+.++++   +.+++..+.     ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. +|+++
T Consensus       147 ~p~~p~~~g~~~~~v~---t~~~~~~~~-----~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~  217 (468)
T 2qae_A          147 EPTELPFLPFDEKVVL---SSTGALALP-----RVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-LDEDV  217 (468)
T ss_dssp             EECCBTTBCCCSSSEE---CHHHHHTCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHH
T ss_pred             CcCCCCCCCCCcCcee---chHHHhhcc-----cCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-CCHHH
Confidence            4677788887766665   445554432     15799999999999999999999999999999999999996 89999


Q ss_pred             HHHHHHHH-HhCCCEEEeCCeeeEEEEcCCCcEEEEEeC--CC--cEEecCeEEEecCCCCCchh--hhc-cccc-ccCc
Q 018416           84 ASYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGG  154 (356)
Q Consensus        84 ~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~vi~a~G~~p~~~l--~~~-~l~~-~~g~  154 (356)
                      .+.+.+.| +++||++++++++++++.++++  ..+.+.  +|  +++++|.|++|+|++||+++  ++. ++.. ++|+
T Consensus       218 ~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~  295 (468)
T 2qae_A          218 TNALVGALAKNEKMKFMTSTKVVGGTNNGDS--VSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGF  295 (468)
T ss_dssp             HHHHHHHHHHHTCCEEECSCEEEEEEECSSS--EEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSC
T ss_pred             HHHHHHHHhhcCCcEEEeCCEEEEEEEcCCe--EEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCC
Confidence            99999999 9999999999999999874333  345554  66  67999999999999999986  443 3665 4688


Q ss_pred             EEEecccccCCCCEEEEccccc-cCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEee
Q 018416          155 IKVTGRLQSSNSSVYAVGDVAA-FPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYG  233 (356)
Q Consensus       155 I~vd~~l~ts~~~VyAiGD~~~-~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G  233 (356)
                      |.||++|||+.|+|||+|||+. .+          .++..|.+||+.||.||++......+..+|  +..+++..++++|
T Consensus       296 i~vd~~~~t~~~~IyA~GD~~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p--~~~~~~~~~a~vG  363 (468)
T 2qae_A          296 VKIGDHFETSIPDVYAIGDVVDKGP----------MLAHKAEDEGVACAEILAGKPGHVNYGVIP--AVIYTMPEVASVG  363 (468)
T ss_dssp             BCCCTTSBCSSTTEEECGGGBSSSC----------SCHHHHHHHHHHHHHHHTTCCCCCCTTSCC--EEECSSSEEEEEE
T ss_pred             EeECCCcccCCCCEEEeeccCCCCC----------ccHhHHHHHHHHHHHHHcCCCccCCCCCCC--EEEECCCceEEEe
Confidence            9999999999999999999998 33          357789999999999999865333455566  4567888999999


Q ss_pred             cccceEE------EEc------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHH
Q 018416          234 DNVGEVV------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAEL  292 (356)
Q Consensus       234 ~~~~~~~------~~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l  292 (356)
                      +++.++.      ..+            ..+..+|.+++.  ++|+|+|++++|+.+.+ ++.++.||++++|++||.++
T Consensus       364 ~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~  443 (468)
T 2qae_A          364 KSEDELKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRT  443 (468)
T ss_dssp             CCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             CCHHHHHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence            8875321      110            112245877776  48999999999988665 67889999999999999875


Q ss_pred             hhcCCCcccCcCCC
Q 018416          293 ETQGLGFALAVSQK  306 (356)
Q Consensus       293 ~~~~~~yap~~~~~  306 (356)
                      .    .++|++++.
T Consensus       444 ~----~~~Pt~~e~  453 (468)
T 2qae_A          444 C----HAHPTMSEA  453 (468)
T ss_dssp             C----CCSSCTHHH
T ss_pred             c----cCCCCHHHH
Confidence            5    566888765

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=2.1e-37  Score=309.76  Aligned_cols=275  Identities=17%  Similarity=0.240  Sum_probs=219.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHC---CCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~---G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|..+++||.+  ++++   .+++..+    . ..+++++|||+|++|+|+|..|+++   |.+||++++.+++++. +|
T Consensus       166 ~p~~p~i~G~~--~~~~---~~~~~~~----~-~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d  234 (495)
T 2wpf_A          166 WPQMPAIPGIE--HCIS---SNEAFYL----P-EPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG-FD  234 (495)
T ss_dssp             EECCCCCTTGG--GCEE---HHHHTTC----S-SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT-SC
T ss_pred             CcCCCCCCCcc--cccc---HHHHHhh----h-hcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc-cC
Confidence            46777888874  4443   3344332    1 2578999999999999999999999   9999999999999987 89


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchh--hhc-cccc-ccCcEE
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGIK  156 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l--~~~-~l~~-~~g~I~  156 (356)
                      +++.+.+.+.|+++||+++++++|++++.++++. ..+++.+|+++++|.||+++|++||+++  ++. ++.. ++|+|.
T Consensus       235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~  313 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQ  313 (495)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCce-EEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEE
Confidence            9999999999999999999999999998743333 4678889999999999999999999983  333 3665 478899


Q ss_pred             EecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecc
Q 018416          157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDN  235 (356)
Q Consensus       157 vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~  235 (356)
                      ||++|||+.|+|||+|||+..+          .++..|.+||+.||.||++... ...+..+|  +..+++..++++|++
T Consensus       314 Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p--~~~~~~~~~a~vGl~  381 (495)
T 2wpf_A          314 VDEFSRTNVPNIYAIGDITDRL----------MLTPVAINEGAALVDTVFGNKPRKTDHTRVA--SAVFSIPPIGTCGLI  381 (495)
T ss_dssp             CCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCE--EEECCSSCEEEEECC
T ss_pred             ECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCCCcCCCCCCC--EEEECCCCeEEEeCC
Confidence            9999999999999999999643          4678899999999999998542 13444455  455678899999988


Q ss_pred             cceE------EEEc------------cCCCCce-EEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHh
Q 018416          236 VGEV------VHYG------------NFSGTTF-GAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE  293 (356)
Q Consensus       236 ~~~~------~~~g------------~~~~~~~-~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~  293 (356)
                      +.++      +...            ..+..+| .|+..  ++|+|+|+|++|+.+.+ ++.++.||++++|++||.++.
T Consensus       382 e~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~  461 (495)
T 2wpf_A          382 EEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTI  461 (495)
T ss_dssp             HHHHHHHSSEEEEEEEEECCTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSC
T ss_pred             HHHHHhcCCCEEEEEEecCchhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc
Confidence            6532      1110            1123458 88776  48999999999988665 678899999999999998754


Q ss_pred             hcCCCcccCcCCC
Q 018416          294 TQGLGFALAVSQK  306 (356)
Q Consensus       294 ~~~~~yap~~~~~  306 (356)
                          .++|++++.
T Consensus       462 ----~~hPt~~e~  470 (495)
T 2wpf_A          462 ----GVHPTSAEE  470 (495)
T ss_dssp             ----CCSSCSGGG
T ss_pred             ----cCCCChHHH
Confidence                788988887

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.4e-37  Score=306.03  Aligned_cols=275  Identities=21%  Similarity=0.261  Sum_probs=217.2

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+.. +   .+..++..+    . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus       144 ~p~~~~~~g~~~~-v---~~~~~~~~~----~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~  213 (455)
T 1ebd_A          144 RPIELPNFKFSNR-I---LDSTGALNL----G-EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQM  213 (455)
T ss_dssp             EECCBTTBCCCSS-E---ECHHHHHTC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHH
T ss_pred             CCCCCCCCCccce-E---ecHHHHhcc----c-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-cCHHH
Confidence            4667778887533 3   355555432    1 24799999999999999999999999999999999999996 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---CCcEEecCeEEEecCCCCCchh--hhc-cccc-ccCcEE
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGNRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGIK  156 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~~i~~D~vi~a~G~~p~~~l--~~~-~l~~-~~g~I~  156 (356)
                      .+.+.+.|+++||++++++++++++.++++  ..+++.   +++++++|.|++++|++|++++  ++. ++.. ++|+|.
T Consensus       214 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~  291 (455)
T 1ebd_A          214 AAIIKKRLKKKGVEVVTNALAKGAEEREDG--VTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIE  291 (455)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEEEETTE--EEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBC
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEeCCe--EEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEe
Confidence            999999999999999999999999863332  234443   4568999999999999999986  443 3655 468899


Q ss_pred             EecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeeccc
Q 018416          157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNV  236 (356)
Q Consensus       157 vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~  236 (356)
                      ||++|||+.|+|||+|||+..+          .++..|..||+.||.||++......+..+|  +..+++..++++|+++
T Consensus       292 vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p--~~~~~~~~~a~vG~~e  359 (455)
T 1ebd_A          292 VDQQCRTSVPNIFAIGDIVPGP----------ALAHKASYEGKVAAEAIAGHPSAVDYVAIP--AVVFSDPECASVGYFE  359 (455)
T ss_dssp             CCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTSCCCCCCCSCCC--EEECSSSCEEEEECCH
T ss_pred             eCCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCCccCCCCCCC--EEEECCCceEEEeCCH
Confidence            9999999999999999999754          356789999999999999865333445566  4567888999999887


Q ss_pred             ceEE------EEc------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhc
Q 018416          237 GEVV------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQ  295 (356)
Q Consensus       237 ~~~~------~~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~  295 (356)
                      .++.      ..+            ..+..+|.+++.  ++|+|+|+|++|+.+.+ ++.++.||++++|++||.++.  
T Consensus       360 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~--  437 (455)
T 1ebd_A          360 QQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTI--  437 (455)
T ss_dssp             HHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSC--
T ss_pred             HHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcc--
Confidence            5321      111            112345877766  48999999999988655 678899999999999998765  


Q ss_pred             CCCcccCcCCC
Q 018416          296 GLGFALAVSQK  306 (356)
Q Consensus       296 ~~~yap~~~~~  306 (356)
                        .++|++++.
T Consensus       438 --~~~Pt~~e~  446 (455)
T 1ebd_A          438 --HAHPTLGEI  446 (455)
T ss_dssp             --CCTTSSTHH
T ss_pred             --cCCCCHHHH
Confidence              667888764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=3e-37  Score=308.23  Aligned_cols=275  Identities=17%  Similarity=0.262  Sum_probs=220.2

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHC---CCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~---G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|..+++||.+  ++   .+.+++..+    . ..+++++|||+|++|+|+|..|+++   |.+||++++.+++++. +|
T Consensus       162 ~p~~p~i~g~~--~~---~~~~~~~~~----~-~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d  230 (490)
T 1fec_A          162 WPQHLGIEGDD--LC---ITSNEAFYL----D-EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FD  230 (490)
T ss_dssp             EECCCCSBTGG--GC---BCHHHHTTC----S-SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SC
T ss_pred             CCCCCCCCCcc--ce---ecHHHHhhh----h-hcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc-cC
Confidence            46677788873  33   344454332    1 2578999999999999999999999   9999999999999987 89


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch-h-hhc-cccc-ccCcEE
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS-L-FEG-QLTL-EKGGIK  156 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~-l-~~~-~l~~-~~g~I~  156 (356)
                      +++.+.+.+.|+++||++++++++++++.++++. ..+++.+|+++++|.||+|+|++|+++ + ++. ++.. ++|+|.
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~  309 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTKNADGT-RHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIK  309 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCE-EEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEE
Confidence            9999999999999999999999999998743333 467788998999999999999999997 3 343 3666 478899


Q ss_pred             EecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecc
Q 018416          157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDN  235 (356)
Q Consensus       157 vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~  235 (356)
                      ||++|||+.|+|||+|||+..+          .++..|.+||+.+|.||++... ...+..+|  +..+++..++++|++
T Consensus       310 Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p--~~~~~~~~~a~vG~~  377 (490)
T 1fec_A          310 VDAYSKTNVDNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFANKPRATDHTKVA--CAVFSIPPMGVCGYV  377 (490)
T ss_dssp             CCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCC--EEECCSSCEEEEECC
T ss_pred             ECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCCCcCCCCCcc--EEEECCCCeEEEeCC
Confidence            9999999999999999999642          4678899999999999998542 23455566  455678899999988


Q ss_pred             cceEE------EEc------------cCCCCceE-EEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHh
Q 018416          236 VGEVV------HYG------------NFSGTTFG-AYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE  293 (356)
Q Consensus       236 ~~~~~------~~g------------~~~~~~~~-~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~  293 (356)
                      +.++.      ...            .....+|. |+..  ++|+|+|+|++|+.+.+ ++.++.||++++|++||.++ 
T Consensus       378 e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~-  456 (490)
T 1fec_A          378 EEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNT-  456 (490)
T ss_dssp             HHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS-
T ss_pred             HHHHHhcCCCEEEEEeecChhhhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcc-
Confidence            75321      110            11234577 8776  48999999999988665 57889999999999999775 


Q ss_pred             hcCCCcccCcCCC
Q 018416          294 TQGLGFALAVSQK  306 (356)
Q Consensus       294 ~~~~~yap~~~~~  306 (356)
                         +.++|++++.
T Consensus       457 ---~~~hPt~~e~  466 (490)
T 1fec_A          457 ---IGVHPTSAEE  466 (490)
T ss_dssp             ---CCCSSCSGGG
T ss_pred             ---ccCCCCHHHH
Confidence               4788998887

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=5.6e-37  Score=307.00  Aligned_cols=284  Identities=15%  Similarity=0.189  Sum_probs=220.1

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+  .+++   .+++..+    +  .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus       152 ~p~~p~i~G~~--~~~~---~~~~~~~----~--~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~  219 (500)
T 1onf_A          152 KPVFPPVKGIE--NTIS---SDEFFNI----K--ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESV  219 (500)
T ss_dssp             CBCCCSCTTGG--GCEE---HHHHTTC----C--CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHH
T ss_pred             CCCCCCCCCCC--cccC---HHHHhcc----C--CCCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-cchhh
Confidence            57777888874  3443   3343322    2  2799999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcE-EecCeEEEecCCCCCch-h-hhc-ccccccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTS-L-FEG-QLTLEKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~-i~~D~vi~a~G~~p~~~-l-~~~-~l~~~~g~I~vd~  159 (356)
                      .+.+.+.|+++||++++++++++++.++++. ..+++++|++ +++|.|++++|++|+++ | ++. ++..++|+|.||+
T Consensus       220 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~  298 (500)
T 1onf_A          220 INVLENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDE  298 (500)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECT
T ss_pred             HHHHHHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECC
Confidence            9999999999999999999999998744443 4577889988 99999999999999996 4 343 3555678899999


Q ss_pred             ccccCCCCEEEEccccccCccc-----------------------cC-cccccccHHHHHHHHHHHHHHHcCCCC-CCCC
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKL-----------------------LG-ETRRLEHVDSARKSAKHAVAAIMEPDK-TDKF  214 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~-----------------------~g-~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~  214 (356)
                      ++||+.|+|||+|||+..++..                       ++ ......++..|.+||+.||+||++... ...+
T Consensus       299 ~~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~  378 (500)
T 1onf_A          299 NQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNY  378 (500)
T ss_dssp             TCBCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCC
T ss_pred             CcccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCC
Confidence            9999999999999999542110                       00 002356889999999999999998542 2345


Q ss_pred             CCCCeEEEEecCceEEEeecccceEEE--------E----------------ccCCCCceEEEEe--eCCeEEEEEEeCC
Q 018416          215 DYLPFFYSRVFTLSWQFYGDNVGEVVH--------Y----------------GNFSGTTFGAYWV--NKGRLVGSFLEGG  268 (356)
Q Consensus       215 ~~~p~~~~~~~~~~~~~~G~~~~~~~~--------~----------------g~~~~~~~~~~~~--~~g~ilGa~~vg~  268 (356)
                      ..+|++  .+++..++++|+++.++..        .                ......+|.|+.+  ++|+|+|+|++|+
T Consensus       379 ~~~p~~--~~~~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~  456 (500)
T 1onf_A          379 KLIPTV--IFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGL  456 (500)
T ss_dssp             SSCCEE--ECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEEST
T ss_pred             CCCCeE--EEcCcceEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEECC
Confidence            567754  4578889999988643211        1                0011234777665  6899999999998


Q ss_pred             CHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          269 TKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       269 ~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      .+.+ ++.++.||++++|++||.++.    .++|++++.
T Consensus       457 ~a~~~i~~~~~ai~~~~t~~~l~~~~----~~~Pt~~e~  491 (500)
T 1onf_A          457 NADEIVQGFAVALKMNATKKDFDETI----PIHPTAAEE  491 (500)
T ss_dssp             THHHHHHHHHHHHHTTCBHHHHHTSC----CCTTCSTTH
T ss_pred             CHHHHHHHHHHHHHcCCCHHHHhccc----cCCCCHHHH
Confidence            7655 678899999999999998765    788888875

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=1.6e-37  Score=312.73  Aligned_cols=250  Identities=20%  Similarity=0.275  Sum_probs=194.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .|++++|||||+||+|+|..|+++|.+||++++ +++++. +|+++++.+++.|+++||++++++.+++++..+ +. ..
T Consensus       222 lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L~~-~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~-~~-~~  297 (542)
T 4b1b_A          222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLRG-FDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMD-DK-IL  297 (542)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSSTT-SCHHHHHHHHHHHHHTTCEEEETCCEEEEEEET-TE-EE
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCeEEEecc-cccccc-cchhHHHHHHHHHHhhcceeecceEEEEEEecC-Ce-EE
Confidence            589999999999999999999999999999987 567886 899999999999999999999999999998743 33 45


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhhhc---cccc-ccCc-EEEecccccCCCCEEEEccccccCccccCcccccccHH
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG---QLTL-EKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD  192 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~~---~l~~-~~g~-I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~  192 (356)
                      +.+.+++++.+|.|++|+|++||++.+..   ++.. .+++ |.+|++||||+|+|||+|||+....         .+..
T Consensus       298 v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~p~IyAiGDv~~~~p---------~La~  368 (542)
T 4b1b_A          298 VEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAENVP---------ELAP  368 (542)
T ss_dssp             EEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSSTTEEECTTSBTTCC---------CCHH
T ss_pred             EEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccccCCCeEEeccccCCch---------hHHH
Confidence            78889999999999999999999986542   3444 3344 6889999999999999999996431         3577


Q ss_pred             HHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEEeecccceEEEEc----------------------------
Q 018416          193 SARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG----------------------------  243 (356)
Q Consensus       193 ~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g----------------------------  243 (356)
                      .|.+||+++++|+++.... ..+..+|+.  .++++.++++|+++.++...+                            
T Consensus       369 ~A~~eg~~aa~~i~g~~~~~~d~~~iP~~--vft~PeiA~VGlTE~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~  446 (542)
T 4b1b_A          369 VAIKAGEILARRLFKDSDEIMDYSYIPTS--IYTPIEYGACGYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRA  446 (542)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCCCCSSCCEE--ECSSSCEEEEECCHHHHHHHHCTTTEEEEEC------------------
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCCceE--EeCCCCeEEEeCCHHHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhc
Confidence            8999999999999987543 456678854  457788999999876532110                            


Q ss_pred             -------cCCCCceEEEEe---eCCeEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          244 -------NFSGTTFGAYWV---NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       244 -------~~~~~~~~~~~~---~~g~ilGa~~vg~~~~~~-~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                             +.+..+|.++..   ++|+|||+|++|+++.++ +.++.||++++|++||.++.    ..+|+++++
T Consensus       447 ~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~alAi~~~~t~~dl~~~i----~~HPTlsE~  516 (542)
T 4b1b_A          447 QKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCI----GIHPTDAES  516 (542)
T ss_dssp             -----------CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHHHHHHTCCBHHHHHHC--------------
T ss_pred             ccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccC----CcCCCHHHH
Confidence                   001123556543   579999999999987765 67899999999999999876    566888777

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=6.2e-37  Score=302.80  Aligned_cols=275  Identities=16%  Similarity=0.197  Sum_probs=217.9

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+  .+   .+.+++..+    . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus       142 ~p~~p~i~g~~--~~---~~~~~~~~~----~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~  210 (450)
T 1ges_A          142 RPSHPDIPGVE--YG---IDSDGFFAL----P-ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMI  210 (450)
T ss_dssp             EECCCCSTTGG--GS---BCHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHH
T ss_pred             CCCCCCCCCcc--ce---ecHHHhhhh----h-hcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-hhHHH
Confidence            46777888874  33   345555433    2 25799999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch-h-hhc-cccc-ccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS-L-FEG-QLTL-EKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~-l-~~~-~l~~-~~g~I~vd~  159 (356)
                      .+.+.+.|++.||++++++++++++.++++. ..+++++|+++++|.|++|+|++|+++ + ++. ++.. ++|+|.||+
T Consensus       211 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~  289 (450)
T 1ges_A          211 SETLVEVMNAEGPQLHTNAIPKAVVKNTDGS-LTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDK  289 (450)
T ss_dssp             HHHHHHHHHHHSCEEECSCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCT
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEeCCcE-EEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECC
Confidence            9999999999999999999999998743343 357788999999999999999999997 3 333 4665 578899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEEecCceEEEeecccc
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNVG  237 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~~  237 (356)
                      +|||+.|+|||+|||+..+          .++..|.+||+.+|.||++....  ..+..+|+.  .+++..++++|+++.
T Consensus       290 ~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~--~~~~~~~a~vG~~e~  357 (450)
T 1ges_A          290 YQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTV--VFSHPPIGTVGLTEP  357 (450)
T ss_dssp             TSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEE--ECCSSCEEEEECCHH
T ss_pred             CCccCCCCEEEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeE--EECCCceEEEeCCHH
Confidence            9999999999999998643          45778999999999999985422  245567754  446788999998764


Q ss_pred             eEEEE--------c------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhh
Q 018416          238 EVVHY--------G------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELET  294 (356)
Q Consensus       238 ~~~~~--------g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~  294 (356)
                      ++...        .            .....+|.++..  ++|+|+|+|++|+.+.+ ++.++.||++++|++||.++. 
T Consensus       358 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~-  436 (450)
T 1ges_A          358 QAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTV-  436 (450)
T ss_dssp             HHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC-
T ss_pred             HHHhcCCCCcEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc-
Confidence            33211        0            111224766655  58999999999988665 578899999999999998765 


Q ss_pred             cCCCcccCcCCC
Q 018416          295 QGLGFALAVSQK  306 (356)
Q Consensus       295 ~~~~yap~~~~~  306 (356)
                         .++|.+++.
T Consensus       437 ---~~hPt~~e~  445 (450)
T 1ges_A          437 ---AIHPTAAEE  445 (450)
T ss_dssp             ---CCSSCSGGG
T ss_pred             ---cCCCChHHH
Confidence               678887775

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.7e-37  Score=306.66  Aligned_cols=276  Identities=21%  Similarity=0.250  Sum_probs=218.7

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+.++++   +..++..+    . ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++
T Consensus       150 ~p~~p~~~g~~~~~v~---~~~~~~~~----~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~  220 (470)
T 1dxl_A          150 DVKSLPGVTIDEKKIV---SSTGALAL----S-EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEI  220 (470)
T ss_dssp             EECCBTTBCCCSSSEE---CHHHHTTC----S-SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHH
T ss_pred             CCCCCCCCCCCcccEE---eHHHhhhh----h-hcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-ccHHH
Confidence            4677788887655665   34444332    1 15799999999999999999999999999999999999996 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---CC--cEEecCeEEEecCCCCCchh--hhc-cccc-ccCc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGG  154 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~l--~~~-~l~~-~~g~  154 (356)
                      .+.+.+.|++.||++++++++++++.++++  ..+.+.   +|  +++++|.|++++|++||+++  ++. ++.. ++|+
T Consensus       221 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~  298 (470)
T 1dxl_A          221 RKQFQRSLEKQGMKFKLKTKVVGVDTSGDG--VKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGR  298 (470)
T ss_dssp             HHHHHHHHHHSSCCEECSEEEEEEECSSSS--EEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSC
T ss_pred             HHHHHHHHHHcCCEEEeCCEEEEEEEcCCe--EEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCC
Confidence            999999999999999999999999864333  234443   44  67999999999999999987  443 3665 4688


Q ss_pred             EEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeec
Q 018416          155 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD  234 (356)
Q Consensus       155 I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~  234 (356)
                      |.||++|||+.|+|||+|||+..+          .++..|.+||+.||.||++......+..+|  +..+++..++++|+
T Consensus       299 i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p--~~~~~~~~~a~vG~  366 (470)
T 1dxl_A          299 ILVNERFSTNVSGVYAIGDVIPGP----------MLAHKAEEDGVACVEYLAGKVGHVDYDKVP--GVVYTNPEVASVGK  366 (470)
T ss_dssp             BCCCTTCBCSSTTEEECSTTSSSC----------CCHHHHHHHHHHHHHHHTTSCCCCCTTSCC--EEECSSSEEEEEEC
T ss_pred             EeECcCCccCCCCEEEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCcCCCCCCCC--EEEECCCceEEEcC
Confidence            999999999999999999999754          357789999999999999865333445566  45678899999998


Q ss_pred             ccceEE------EEc------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHh
Q 018416          235 NVGEVV------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE  293 (356)
Q Consensus       235 ~~~~~~------~~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~  293 (356)
                      ++.++.      ..+            ..+..+|.+++.  ++|+|+|++++|+.+.+ ++.++.||++++|++||.++.
T Consensus       367 ~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~  446 (470)
T 1dxl_A          367 TEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVC  446 (470)
T ss_dssp             CHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSC
T ss_pred             CHHHHHhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc
Confidence            875321      110            112345877776  48999999999988655 578899999999999998755


Q ss_pred             hcCCCcccCcCCC
Q 018416          294 TQGLGFALAVSQK  306 (356)
Q Consensus       294 ~~~~~yap~~~~~  306 (356)
                          .++|++++.
T Consensus       447 ----~~~Pt~~e~  455 (470)
T 1dxl_A          447 ----HAHPTMSEA  455 (470)
T ss_dssp             ----CCSSCTTHH
T ss_pred             ----cCCCChHHH
Confidence                666888765

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=4.9e-37  Score=305.54  Aligned_cols=275  Identities=19%  Similarity=0.238  Sum_probs=215.8

Q ss_pred             CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHH
Q 018416            9 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE   88 (356)
Q Consensus         9 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~   88 (356)
                      .+||.+.++ ..+.+.+++..++    . .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++.+.+.
T Consensus       159 ~~~g~~~~~-~~v~~~~~~~~~~----~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~  231 (478)
T 1v59_A          159 PFPGIEIDE-EKIVSSTGALSLK----E-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQ  231 (478)
T ss_dssp             CCTTCCCCS-SSEECHHHHTTCS----S-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHH
T ss_pred             CCCCCCCCC-ceEEcHHHHHhhh----c-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-cCHHHHHHHH
Confidence            466665444 2344666665432    1 4799999999999999999999999999999999999995 8999999999


Q ss_pred             HHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-----CCcEEecCeEEEecCCCCCch--hhhcc-ccc-ccCcEEEec
Q 018416           89 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----DGNRLPTDMVVVGIGIRPNTS--LFEGQ-LTL-EKGGIKVTG  159 (356)
Q Consensus        89 ~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-----~g~~i~~D~vi~a~G~~p~~~--l~~~~-l~~-~~g~I~vd~  159 (356)
                      +.|+++||++++++++++++.++++....+.+.     +++++++|.|++|+|++||++  +++.. +.. ++|+|.||+
T Consensus       232 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~  311 (478)
T 1v59_A          232 KFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDD  311 (478)
T ss_dssp             HHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCT
T ss_pred             HHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECc
Confidence            999999999999999999986213333455554     456899999999999999998  55543 665 478899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  239 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  239 (356)
                      +|||+.|+|||+|||+..+          .++..|.+||+.||.||++......+..+|+  ..+++..++++|+++.++
T Consensus       312 ~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a  379 (478)
T 1v59_A          312 QFNSKFPHIKVVGDVTFGP----------MLAHKAEEEGIAAVEMLKTGHGHVNYNNIPS--VMYSHPEVAWVGKTEEQL  379 (478)
T ss_dssp             TSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSCCCCCTTSCCE--EECSSSEEEEEECCHHHH
T ss_pred             CCccCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCE--EEEcCCcEEEEECCHHHH
Confidence            9999999999999999854          3567899999999999998653345666775  456778899999887532


Q ss_pred             -------EEEc-----------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCC
Q 018416          240 -------VHYG-----------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG  298 (356)
Q Consensus       240 -------~~~g-----------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~  298 (356)
                             ....           ..+..+|.+++.  ++|+|+|++++|+.+.+ ++.++.+|++++|++||.++.    .
T Consensus       380 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~----~  455 (478)
T 1v59_A          380 KEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVC----H  455 (478)
T ss_dssp             HHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSC----C
T ss_pred             HHcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCC----C
Confidence                   1110           012234766655  48999999999988655 678899999999999998876    4


Q ss_pred             cccCcCCC
Q 018416          299 FALAVSQK  306 (356)
Q Consensus       299 yap~~~~~  306 (356)
                      ++|++++.
T Consensus       456 ~~Pt~~e~  463 (478)
T 1v59_A          456 AHPTLSEA  463 (478)
T ss_dssp             CTTCTTHH
T ss_pred             CCCCHHHH
Confidence            66888765

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=8.4e-37  Score=303.66  Aligned_cols=276  Identities=21%  Similarity=0.233  Sum_probs=217.3

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..++.++.+.+++++.   .++..+    . ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++
T Consensus       153 ~p~~~~~~~~~~~~v~~~---~~~~~~----~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~  223 (476)
T 3lad_A          153 KPVEIPPAPVDQDVIVDS---TGALDF----Q-NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQV  223 (476)
T ss_dssp             EECCCTTSCCCSSSEEEH---HHHTSC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHH
T ss_pred             CCCCCCCCCCCcccEEec---hhhhcc----c-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-cCHHH
Confidence            345555555555667743   222211    1 25799999999999999999999999999999999999996 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC---cEEecCeEEEecCCCCCchhh--hc-cccc-ccCcEE
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIK  156 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~l~--~~-~l~~-~~g~I~  156 (356)
                      .+.+.+.|++.||++++++++++++.++++  ..+.+.++   +++++|.|++|+|++|+++++  +. ++.. ++|+|.
T Consensus       224 ~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~--~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~  301 (476)
T 3lad_A          224 AKEAQKILTKQGLKILLGARVTGTEVKNKQ--VTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIY  301 (476)
T ss_dssp             HHHHHHHHHHTTEEEEETCEEEEEEECSSC--EEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBC
T ss_pred             HHHHHHHHHhCCCEEEECCEEEEEEEcCCE--EEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEe
Confidence            999999999999999999999999874333  34555544   679999999999999999843  33 3555 568899


Q ss_pred             EecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeeccc
Q 018416          157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNV  236 (356)
Q Consensus       157 vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~  236 (356)
                      ||+++||+.|+|||+|||+..+          .++..|..||+.||+||+|.....++..+|+.  .+++..++++|+++
T Consensus       302 vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~--~~~~~~~a~vGlte  369 (476)
T 3lad_A          302 VDDYCATSVPGVYAIGDVVRGA----------MLAHKASEEGVVVAERIAGHKAQMNYDLIPAV--IYTHPEIAGVGKTE  369 (476)
T ss_dssp             CCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHCCCCCCTTCCCEE--ECSSSEEEEEECCH
T ss_pred             eCCCcccCCCCEEEEEccCCCc----------ccHHHHHHHHHHHHHHhcCCCcccCCCCCCEE--EECcCCEEEeeCCH
Confidence            9999999999999999999654          35778999999999999987654566677864  46788999999988


Q ss_pred             ceEEE------Ec-----c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhc
Q 018416          237 GEVVH------YG-----N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQ  295 (356)
Q Consensus       237 ~~~~~------~g-----~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~  295 (356)
                      .++..      .+     .       .+..+|.|+..  ++|+|||+|++|+++.+ ++.++.||++++|++||.++.  
T Consensus       370 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~--  447 (476)
T 3lad_A          370 QALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMV--  447 (476)
T ss_dssp             HHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSC--
T ss_pred             HHHHhcCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCc--
Confidence            54311      11     1       12235766654  58999999999988655 678899999999999998876  


Q ss_pred             CCCcccCcCCC
Q 018416          296 GLGFALAVSQK  306 (356)
Q Consensus       296 ~~~yap~~~~~  306 (356)
                        .++|++++.
T Consensus       448 --~~hPt~~e~  456 (476)
T 3lad_A          448 --FAHPALSEA  456 (476)
T ss_dssp             --CCSSCSHHH
T ss_pred             --cCCCChHHH
Confidence              466877765

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=1.4e-35  Score=287.03  Aligned_cols=257  Identities=24%  Similarity=0.341  Sum_probs=212.4

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+.+++++.+++.++.++++.+.  .+++++|||+|++|+|+|..|++.|.+||++++.+++++..+++++
T Consensus       112 ~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~  189 (384)
T 2v3a_A          112 EPIRVPVEGDAQDALYPINDLEDYARFRQAAA--GKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAA  189 (384)
T ss_dssp             EECCCCCBSTTTTCEEECSSHHHHHHHHHHHT--TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHH
T ss_pred             CcCCCCCCCcCcCCEEEECCHHHHHHHHHhhc--cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHH
Confidence            57778899987789999999999999888876  5899999999999999999999999999999999999988679999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEEecccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  162 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~vd~~l~  162 (356)
                      .+.+.+.+++.||++++++++++++.+++ . ..+++.+|+++++|.|++|+|++|++++++.. +..++| |.||++||
T Consensus       190 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~-~-~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~  266 (384)
T 2v3a_A          190 AKAVQAGLEGLGVRFHLGPVLASLKKAGE-G-LEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLR  266 (384)
T ss_dssp             HHHHHHHHHTTTCEEEESCCEEEEEEETT-E-EEEEETTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCB
T ss_pred             HHHHHHHHHHcCCEEEeCCEEEEEEecCC-E-EEEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCC
Confidence            99999999999999999999999986333 2 46788899999999999999999999877654 555555 99999999


Q ss_pred             cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc---eE
Q 018416          163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG---EV  239 (356)
Q Consensus       163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~---~~  239 (356)
                      |+.|+|||+|||+.....      ..+++..|..||+.+|+||+|......+..+|+++. .+++++.+.|.+..   ..
T Consensus       267 t~~~~IyA~GD~~~~~~~------~~~~~~~a~~~g~~~a~~i~g~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~~~~~~  339 (384)
T 2v3a_A          267 TSHANIYALGDCAEVDGL------NLLYVMPLMACARALAQTLAGNPSQVAYGPMPVTVK-TPACPLVVSPPPRGMDGQW  339 (384)
T ss_dssp             CSSTTEEECGGGEEETTB------CCCSHHHHHHHHHHHHHHHTTCCCCCCCCCCCEEEC-CTTSCEEEECCCTTCCCEE
T ss_pred             CCCCCEEEeeeeeeECCC------CcchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEE-ECCeeEEEecCCCCCCceE
Confidence            999999999999975432      135788899999999999998754345566787553 24567888887643   33


Q ss_pred             EEEccCCCCceEEEEe-eCCeEEEEEEeCCCHHHHH
Q 018416          240 VHYGNFSGTTFGAYWV-NKGRLVGSFLEGGTKEEYE  274 (356)
Q Consensus       240 ~~~g~~~~~~~~~~~~-~~g~ilGa~~vg~~~~~~~  274 (356)
                      ...++.  .+|.+++. ++|+|+|++++|+.+.++.
T Consensus       340 ~~~~~~--~g~~~~~~~~~~~i~G~~~~g~~a~e~~  373 (384)
T 2v3a_A          340 LVEGSG--TDLKVLCRDTAGRVIGYALTGAAVNEKL  373 (384)
T ss_dssp             EEEEET--TEEEEEEECTTSCEEEEEEEGGGGGGHH
T ss_pred             EEEecC--CcEEEEEEccCCEEEEEEEECcchHHHH
Confidence            334443  35777666 5899999999998877654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=1.7e-36  Score=301.63  Aligned_cols=276  Identities=18%  Similarity=0.201  Sum_probs=215.6

Q ss_pred             CCccC---CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEF---GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~---~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|..+   ++||.+  .+   .+.++...+    . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|
T Consensus       159 ~p~~p~~~~i~G~~--~~---~~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d  227 (478)
T 3dk9_A          159 MPSTPHESQIPGAS--LG---ITSDGFFQL----E-ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FD  227 (478)
T ss_dssp             EECCCCTTTSTTGG--GS---BCHHHHTTC----C-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SC
T ss_pred             CCCCCCcCCCCCCc--ee---EchHHhhch----h-hcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc-cC
Confidence            35555   788875  22   233333222    1 24799999999999999999999999999999999999986 89


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC---C----cEEecCeEEEecCCCCCch-h-hhc-cccc
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G----NRLPTDMVVVGIGIRPNTS-L-FEG-QLTL  150 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g----~~i~~D~vi~a~G~~p~~~-l-~~~-~l~~  150 (356)
                      +++.+.+.+.|+++||++++++.+++++.++++....+.+.+   |    +++++|.|++++|++|+++ + ++. ++..
T Consensus       228 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~  307 (478)
T 3dk9_A          228 SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQT  307 (478)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCB
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCee
Confidence            999999999999999999999999999875555234566665   2    5799999999999999998 3 333 3666


Q ss_pred             -ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC--CCCCCCCCCeEEEEecCc
Q 018416          151 -EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD--KTDKFDYLPFFYSRVFTL  227 (356)
Q Consensus       151 -~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~--~~~~~~~~p~~~~~~~~~  227 (356)
                       ++|+|.||+++||+.|+|||+|||+..+          .++..|..||+.+|+||++..  ....+..+|+  ..++++
T Consensus       308 ~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~~~~p  375 (478)
T 3dk9_A          308 DDKGHIIVDEFQNTNVKGIYAVGDVCGKA----------LLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPT--VVFSHP  375 (478)
T ss_dssp             CTTCCBCCCTTCBCSSTTEEECGGGGCSS----------CCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCE--EECCSS
T ss_pred             CCCCCEeeCCCcccCCCCEEEEEecCCCC----------ccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCe--EEECCC
Confidence             6788999999999999999999999544          357789999999999999872  2235566775  455678


Q ss_pred             eEEEeecccceEEEE-------------cc-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCC
Q 018416          228 SWQFYGDNVGEVVHY-------------GN-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQP  284 (356)
Q Consensus       228 ~~~~~G~~~~~~~~~-------------g~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~  284 (356)
                      .++++|+++.++...             ..       ....+|.|+..  ++|+|||+|++|+.+.+ ++.++.||++++
T Consensus       376 ~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~  455 (478)
T 3dk9_A          376 PIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGA  455 (478)
T ss_dssp             CEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTC
T ss_pred             ceEEeeCCHHHHHhhCCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
Confidence            899999987643211             11       11234767654  68999999999988655 678899999999


Q ss_pred             CcCcHHHHhhcCCCcccCcCCC
Q 018416          285 VVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       285 ~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      |++||.++.    ..+|.+++.
T Consensus       456 t~~~l~~~~----~~hPt~~e~  473 (478)
T 3dk9_A          456 TKADFDNTV----AIHPTSSEE  473 (478)
T ss_dssp             BHHHHHTSC----CCSSSSGGG
T ss_pred             CHHHHhhcc----cCCCChHHH
Confidence            999998865    667777765

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=2.6e-36  Score=299.40  Aligned_cols=274  Identities=22%  Similarity=0.269  Sum_probs=215.9

Q ss_pred             CCccCC-CCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            4 KLEEFG-LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~~-ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|..++ +||.  ++++   +.+++.++++    ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. ++++
T Consensus       142 ~p~~p~gi~~~--~~v~---~~~~~~~l~~----~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~  211 (464)
T 2eq6_A          142 EPLELKGFPFG--EDVW---DSTRALKVEE----GLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-GDPE  211 (464)
T ss_dssp             EECCBTTBCCS--SSEE---CHHHHTCGGG----CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHH
T ss_pred             CCCCCCCCCCC--CcEE---cHHHHHhhhh----hcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHH
Confidence            355554 7763  2454   5556554422    24799999999999999999999999999999999999996 8999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-C--Cc--EEecCeEEEecCCCCCchh--hhc-cccc-ccC
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-D--GN--RLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKG  153 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~--g~--~i~~D~vi~a~G~~p~~~l--~~~-~l~~-~~g  153 (356)
                      +.+.+.+.|+++||++++++++++++.++ +. ..+++. +  |+  ++++|.|++|+|++|++++  ++. ++.. ++|
T Consensus       212 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G  289 (464)
T 2eq6_A          212 TAALLRRALEKEGIRVRTKTKAVGYEKKK-DG-LHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERG  289 (464)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEET-TE-EEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTS
T ss_pred             HHHHHHHHHHhcCCEEEcCCEEEEEEEeC-CE-EEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCC
Confidence            99999999999999999999999998633 33 346665 6  76  8999999999999999985  333 3565 568


Q ss_pred             cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEee
Q 018416          154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYG  233 (356)
Q Consensus       154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G  233 (356)
                      +|.||++|||+.|+|||+|||+..+          .++..|..||+.+|.||++......+. +|+  ..+++..++++|
T Consensus       290 ~i~vd~~~~t~~~~Iya~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~-~p~--~~~~~~~~a~vG  356 (464)
T 2eq6_A          290 FIRVNARMETSVPGVYAIGDAARPP----------LLAHKAMREGLIAAENAAGKDSAFDYQ-VPS--VVYTSPEWAGVG  356 (464)
T ss_dssp             CBCCCTTCBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCCCCCCCC-CCE--EECSSSEEEEEE
T ss_pred             CEEECCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCCcccCCC-CCe--EEECCCCEEEEe
Confidence            8999999999999999999999754          357789999999999999865333455 775  456788999999


Q ss_pred             cccceEE------EEc------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHH
Q 018416          234 DNVGEVV------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAEL  292 (356)
Q Consensus       234 ~~~~~~~------~~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l  292 (356)
                      +++.++.      ..+            ..+..+|.+++.  ++|+|+|++++|+.+.+ ++.++.||++++|++||.++
T Consensus       357 ~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~  436 (464)
T 2eq6_A          357 LTEEEAKRAGYKVKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALT  436 (464)
T ss_dssp             CCHHHHHHTTCCEEEEEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHS
T ss_pred             CCHHHHHhcCCCEEEEEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence            8875321      110            112245777766  47999999999998765 57889999999999999874


Q ss_pred             hhcCCCcccCcCCC
Q 018416          293 ETQGLGFALAVSQK  306 (356)
Q Consensus       293 ~~~~~~yap~~~~~  306 (356)
                          +.++|++++.
T Consensus       437 ----~~~~Pt~~e~  446 (464)
T 2eq6_A          437 ----VHPHPTLSES  446 (464)
T ss_dssp             ----CCCSSCTTHH
T ss_pred             ----cCCCCChHHH
Confidence                4778888765

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.9e-36  Score=300.12  Aligned_cols=250  Identities=20%  Similarity=0.287  Sum_probs=206.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|||+|++|+|+|..|++.|.+||++++.+++++. +|+++.+.+.+.|++.||++++++++++++.++++  ..
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~--~~  273 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDG--AK  273 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTE--EE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCE--EE
Confidence            5899999999999999999999999999999999999997 89999999999999999999999999999874333  23


Q ss_pred             EEeCC---C--cEEecCeEEEecCCCCCchh--hh-ccccc-ccCcEEEecccccCCCCEEEEccccccCccccCccccc
Q 018416          118 VNLRD---G--NRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL  188 (356)
Q Consensus       118 v~~~~---g--~~i~~D~vi~a~G~~p~~~l--~~-~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~  188 (356)
                      +.+.+   |  +++++|.||+|+|++|++++  ++ .++.. ++|+|.||+++||+.|+|||+|||+..+          
T Consensus       274 v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------  343 (491)
T 3urh_A          274 VTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP----------  343 (491)
T ss_dssp             EEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSC----------
T ss_pred             EEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCc----------
Confidence            44442   4  57999999999999999985  33 34665 5788999999999999999999999654          


Q ss_pred             ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEE------c-----c-------CCCCce
Q 018416          189 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY------G-----N-------FSGTTF  250 (356)
Q Consensus       189 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~------g-----~-------~~~~~~  250 (356)
                      .++..|..||+.||++|+|......+..+|+..  +++..++++|+++.++...      +     .       .+..+|
T Consensus       344 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~--~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  421 (491)
T 3urh_A          344 MLAHKAEDEGVAVAEIIAGQAGHVNYDVIPGVV--YTQPEVASVGKTEEELKAAGVAYKIGKFPFTANGRARAMLQTDGF  421 (491)
T ss_dssp             CCHHHHHHHHHHHHHHHTTSCCCCCTTCCCEEE--CSSSCEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCE
T ss_pred             cchhHHHHHHHHHHHHHcCCCcccCCCCCCEEE--EccCCeEEEeCCHHHHHhCCCCEEEEEEecCcchhhhcCCCCcEE
Confidence            467889999999999999876545566788644  6788999999987643111      1     0       122357


Q ss_pred             EEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          251 GAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       251 ~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      .|+..  ++|+|||+|++|+.+.+ ++.++.||++++|++||.++.    .++|++++.
T Consensus       422 ~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  476 (491)
T 3urh_A          422 VKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTC----HAHPTMSEA  476 (491)
T ss_dssp             EEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC----CCSSCTTHH
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCc----cCCCChHHH
Confidence            77655  58999999999998655 678899999999999999877    667888775

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.1e-36  Score=302.38  Aligned_cols=276  Identities=17%  Similarity=0.205  Sum_probs=218.0

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+  +   +.+.+++..+++.+.. .+++++|||+|++|+|+|..|+++|.+||++++.+++++..+|+++
T Consensus       143 ~p~~p~i~G~~--~---~~t~~~~~~~~~~l~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~  216 (466)
T 3l8k_A          143 ETAKLRLPGVE--Y---CLTSDDIFGYKTSFRK-LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDI  216 (466)
T ss_dssp             EECCCCCTTGG--G---SBCHHHHHSTTCSCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHH
T ss_pred             CccCCCCCCcc--c---eEeHHHHHHHHHHHhh-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHH
Confidence            57788899986  3   4456666543333332 5799999999999999999999999999999999999998349999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC--CCc--EEecCeEEEecCCCCCchh-h-hccccc-ccCcEE
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIGIRPNTSL-F-EGQLTL-EKGGIK  156 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~vi~a~G~~p~~~l-~-~~~l~~-~~g~I~  156 (356)
                      .+.+++.|+   |++++++++++++.++++.+ .+.+.  +|+  ++++|.|++++|++|++.+ + ..++.. ++| |.
T Consensus       217 ~~~l~~~l~---v~i~~~~~v~~i~~~~~~~v-~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~  291 (466)
T 3l8k_A          217 VNTLLSILK---LNIKFNSPVTEVKKIKDDEY-EVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IV  291 (466)
T ss_dssp             HHHHHHHHC---CCEECSCCEEEEEEEETTEE-EEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BC
T ss_pred             HHHHHhcCE---EEEEECCEEEEEEEcCCCcE-EEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-Ee
Confidence            999998887   99999999999987431443 46676  666  7999999999999999984 3 334666 466 99


Q ss_pred             EecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC--CC-CCCCCCCCeEEEEecCceEEEee
Q 018416          157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP--DK-TDKFDYLPFFYSRVFTLSWQFYG  233 (356)
Q Consensus       157 vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~--~~-~~~~~~~p~~~~~~~~~~~~~~G  233 (356)
                      ||+++||+.|+|||+|||+..+          +++..|..||+.||.||++.  .. ...+..+|+  ..+++..++++|
T Consensus       292 vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~--~~~~~~~~a~vG  359 (466)
T 3l8k_A          292 VDETMKTNIPNVFATGDANGLA----------PYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPV--TIYTIPSLSYVG  359 (466)
T ss_dssp             CCTTCBCSSTTEEECGGGTCSC----------CSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCE--EECSSSCEEEEE
T ss_pred             ECCCccCCCCCEEEEEecCCCC----------ccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcE--EEECCCCeEEec
Confidence            9999999999999999999863          46788999999999999986  32 234555664  456688899999


Q ss_pred             cccceEE---------EE--cc-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHH
Q 018416          234 DNVGEVV---------HY--GN-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAEL  292 (356)
Q Consensus       234 ~~~~~~~---------~~--g~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l  292 (356)
                      +++.++.         ..  .+       .+..+|.|+..  ++|+|||+|++|+.+.+ ++.++.||++++|++||.++
T Consensus       360 ~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  439 (466)
T 3l8k_A          360 ILPSKARKMGIEIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASF  439 (466)
T ss_dssp             CCHHHHHHHTCCEEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHC
T ss_pred             CCHHHHHhCCCCEEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhcc
Confidence            9876431         11  01       12245777665  47999999999998655 57889999999999999886


Q ss_pred             hhcCCCcccCcCCC
Q 018416          293 ETQGLGFALAVSQK  306 (356)
Q Consensus       293 ~~~~~~yap~~~~~  306 (356)
                      .    .|+|+++++
T Consensus       440 ~----~~~Pt~~e~  449 (466)
T 3l8k_A          440 A----EQHPSTNEI  449 (466)
T ss_dssp             C----CCTTSTTHH
T ss_pred             c----cCCCChHHH
Confidence            5    789999876

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=3.1e-36  Score=298.86  Aligned_cols=274  Identities=19%  Similarity=0.245  Sum_probs=217.7

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..+++||.+  .+   .+.+++..+    . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus       141 ~p~~p~i~G~~--~~---~~~~~~~~~----~-~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~  209 (463)
T 2r9z_A          141 RPIVPRLPGAE--LG---ITSDGFFAL----Q-QQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLL  209 (463)
T ss_dssp             EECCCSCTTGG--GS---BCHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHH
T ss_pred             CCCCCCCCCcc--ce---ecHHHHhhh----h-ccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-cCHHH
Confidence            46677888874  33   345554433    2 25789999999999999999999999999999999999987 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc-EEecCeEEEecCCCCCch-h-hhc-cccc-ccCcEEEe
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTS-L-FEG-QLTL-EKGGIKVT  158 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~~p~~~-l-~~~-~l~~-~~g~I~vd  158 (356)
                      .+.+.+.|+++||++++++++++++.++++  ..+++++|+ ++++|.|++|+|++|+++ + ++. ++.. ++|+|.||
T Consensus       210 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd  287 (463)
T 2r9z_A          210 SATLAENMHAQGIETHLEFAVAALERDAQG--TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTD  287 (463)
T ss_dssp             HHHHHHHHHHTTCEEESSCCEEEEEEETTE--EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCC
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeEC
Confidence            999999999999999999999999864333  467888998 899999999999999997 3 333 3655 57889999


Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEEecCceEEEeeccc
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNV  236 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~  236 (356)
                      +++||+.|+|||+|||+..+          .++..|.+||+.+|.||++....  ..+..+|+.  .+++..++++|+++
T Consensus       288 ~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~--~~~~~~~a~vGl~e  355 (463)
T 2r9z_A          288 AYQNTNVPGVYALGDITGRD----------QLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTV--VFAHPPLSKVGLSE  355 (463)
T ss_dssp             TTSBCSSTTEEECGGGGTSC----------CCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEE--ECCSSCEEEEECCH
T ss_pred             CCCccCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEE--EeCCCCeEEEcCCH
Confidence            99999999999999998643          45778999999999999986422  345567754  45677899999875


Q ss_pred             ceEE-------EEc------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhh
Q 018416          237 GEVV-------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELET  294 (356)
Q Consensus       237 ~~~~-------~~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~  294 (356)
                      .++.       ...            .....+|.++..  ++|+|+|+|++|+.+.+ ++.++.||++++|++||.++. 
T Consensus       356 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~-  434 (463)
T 2r9z_A          356 PEARERLGDVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTV-  434 (463)
T ss_dssp             HHHHHHHCSCEEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSC-
T ss_pred             HHHHhcCCCCEEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc-
Confidence            4321       110            111234777665  48999999999987655 688899999999999998765 


Q ss_pred             cCCCcccCcCCC
Q 018416          295 QGLGFALAVSQK  306 (356)
Q Consensus       295 ~~~~yap~~~~~  306 (356)
                         .++|++++.
T Consensus       435 ---~~hPt~~e~  443 (463)
T 2r9z_A          435 ---AIHPGSAEE  443 (463)
T ss_dssp             ---CCSSSSGGG
T ss_pred             ---cCCCCHHHH
Confidence               678888887

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=7.8e-36  Score=287.54  Aligned_cols=240  Identities=21%  Similarity=0.373  Sum_probs=199.0

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||  .++++++++.+|+.++++.+.  ++++++|||+|++|+|+|..|+++|.+||++++.+++++  +|+++
T Consensus       112 ~p~~p~i~G--~~~v~~~~~~~~~~~l~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~  185 (367)
T 1xhc_A          112 RAREPQIKG--KEYLLTLRTIFDADRIKESIE--NSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEEL  185 (367)
T ss_dssp             EECCCCSBT--GGGEECCCSHHHHHHHHHHHH--HHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHH
T ss_pred             CCCCCCCCC--cCCEEEEcCHHHHHHHHHHhh--cCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHH
Confidence            577888998  468999999999999988775  358999999999999999999999999999999999988  89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEEecccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  162 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~vd~~l~  162 (356)
                      .+.+.+.|+++||++++++++++++.   .   .+++++|+ +++|.|++++|++||+++++.. +..+ ++|.||++||
T Consensus       186 ~~~l~~~l~~~gV~i~~~~~v~~i~~---~---~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~  257 (367)
T 1xhc_A          186 SNMIKDMLEETGVKFFLNSELLEANE---E---GVLTNSGF-IEGKVKICAIGIVPNVDLARRSGIHTG-RGILIDDNFR  257 (367)
T ss_dssp             HHHHHHHHHHTTEEEECSCCEEEECS---S---EEEETTEE-EECSCEEEECCEEECCHHHHHTTCCBS-SSEECCTTSB
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEEe---e---EEEECCCE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcc
Confidence            99999999999999999999999962   2   46778887 9999999999999999877654 5555 4599999999


Q ss_pred             cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCC-CCeEEEEecCceEEEeecccceEEE
Q 018416          163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDY-LPFFYSRVFTLSWQFYGDNVGEVVH  241 (356)
Q Consensus       163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~~~~  241 (356)
                      |+.|+|||+|||+.....      ...++..|..||+.||.||++..  ..+.. +|+.++.++++.++++|.++.+...
T Consensus       258 t~~~~IyA~GD~a~~~~~------~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~  329 (367)
T 1xhc_A          258 TSAKDVYAIGDCAEYSGI------IAGTAKAAMEQARVLADILKGEP--RRYNFKFRSTVFKFGKLQIAIIGNTKGEGKW  329 (367)
T ss_dssp             CSSTTEEECGGGEEBTTB------CCCSHHHHHHHHHHHHHHHTTCC--CCCCSSCCEEEEEETTEEEEEEECCSSCEEE
T ss_pred             cCCCCEEEeEeeeecCCC------CccHHHHHHHHHHHHHHHhcCCC--ccCCCCCCceEEEECCceEEEECCCCCCCcc
Confidence            999999999999976432      12478899999999999999865  34444 4555678999999999998876543


Q ss_pred             EccCCCCceEEEEeeCCeEEEEEEeCCCH
Q 018416          242 YGNFSGTTFGAYWVNKGRLVGSFLEGGTK  270 (356)
Q Consensus       242 ~g~~~~~~~~~~~~~~g~ilGa~~vg~~~  270 (356)
                      .     .+|.+++.++|+|+|++++|+..
T Consensus       330 ~-----~~~~k~~~~~~~ilG~~~~g~~~  353 (367)
T 1xhc_A          330 I-----EDNTKVFYENGKIIGAVVFNDIR  353 (367)
T ss_dssp             E-----ETTEEEEC-----CEEEEESCHH
T ss_pred             c-----ceEEEEEEECCEEEEEEEECChH
Confidence            2     34888888889999999999644

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.6e-36  Score=298.30  Aligned_cols=274  Identities=19%  Similarity=0.251  Sum_probs=218.0

Q ss_pred             CCc-cCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            4 KLE-EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~-~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|. .+++||.+  .+   .+.+++..+    . ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. +|++
T Consensus       144 ~p~~~p~i~G~~--~~---~~~~~~~~~----~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~-~~~~  212 (463)
T 4dna_A          144 HPSPHDALPGHE--LC---ITSNEAFDL----P-ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQD  212 (463)
T ss_dssp             EECCCTTSTTGG--GC---BCHHHHTTC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHH
T ss_pred             CcccCCCCCCcc--cc---ccHHHHhhh----h-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHH
Confidence            355 67788875  22   344444332    1 25899999999999999999999999999999999999986 8999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE-eCCCcEEecCeEEEecCCCCCchh--hh-ccccc-ccCcEEE
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN-LRDGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKV  157 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~-~~~g~~i~~D~vi~a~G~~p~~~l--~~-~~l~~-~~g~I~v  157 (356)
                      +.+.+.+.|+++||++++++.+++++.++++. ..++ +.+|+ +++|.|++|+|++|++.+  ++ .++.. ++|+|.|
T Consensus       213 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~v  290 (463)
T 4dna_A          213 MRRGLHAAMEEKGIRILCEDIIQSVSADADGR-RVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIV  290 (463)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECTTSC-EEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCC
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEcCCCE-EEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeE
Confidence            99999999999999999999999998744443 3577 88887 999999999999999986  33 34666 5788999


Q ss_pred             ecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEEeeccc
Q 018416          158 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNV  236 (356)
Q Consensus       158 d~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~  236 (356)
                      |+++||+.|+|||+|||+..+          +++..|..||+.+|+||++.... ..+..+|+.+  +.++.++++|+++
T Consensus       291 d~~~~t~~~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~--~~~p~~a~vG~te  358 (463)
T 4dna_A          291 DAFSRTSTPGIYALGDVTDRV----------QLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAV--FSQPEIGTVGITE  358 (463)
T ss_dssp             CTTCBCSSTTEEECSGGGSSC----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEEE--CSSSCEEEEECCH
T ss_pred             CcCCCCCCCCEEEEEecCCCC----------CChHHHHHHHHHHHHHHcCCCCcccCCCCCCEEE--ECCCCeEEecCCH
Confidence            999999999999999999743          46778999999999999986532 3556677544  5668899999987


Q ss_pred             ceEEE------Ec-----c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhc
Q 018416          237 GEVVH------YG-----N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQ  295 (356)
Q Consensus       237 ~~~~~------~g-----~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~  295 (356)
                      .++..      .+     .       .+..+|.|+..  ++|+|||+|++|+++.+ ++.++.||++++|++||.++.  
T Consensus       359 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~--  436 (463)
T 4dna_A          359 EEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTM--  436 (463)
T ss_dssp             HHHHHHSSEEEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC--
T ss_pred             HHHHHcCCCeEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc--
Confidence            64311      11     1       11234766655  58999999999988655 678899999999999998865  


Q ss_pred             CCCcccCcCCC
Q 018416          296 GLGFALAVSQK  306 (356)
Q Consensus       296 ~~~yap~~~~~  306 (356)
                        .++|++++.
T Consensus       437 --~~hPt~~e~  445 (463)
T 4dna_A          437 --AVHPTAAEE  445 (463)
T ss_dssp             --CCTTCSGGG
T ss_pred             --cCCCCHHHH
Confidence              667777776

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=3.5e-35  Score=291.39  Aligned_cols=274  Identities=19%  Similarity=0.215  Sum_probs=215.4

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+..+++   +.+++.++    . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++  +|+++
T Consensus       149 ~p~~p~i~G~~~~~~~---~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~  218 (467)
T 1zk7_A          149 SPAVPPIPGLKESPYW---TSTEALAS----D-TIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAI  218 (467)
T ss_dssp             EECCCCCTTTTTSCCB---CHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHH
T ss_pred             CCCCCCCCCCCcCcee---cHHHHhcc----c-ccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHH
Confidence            5777889998755554   44454432    2 2579999999999999999999999999999999999998  79999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchh--hh-ccccc-ccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l--~~-~~l~~-~~g~I~vd~  159 (356)
                      .+.+.+.|+++||+++++++|++++.+ ++ ...+.++ +.++++|.||+|+|++|++++  ++ .++.. .+|+|.||+
T Consensus       219 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~-~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~  295 (467)
T 1zk7_A          219 GEAVTAAFRAEGIEVLEHTQASQVAHM-DG-EFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQ  295 (467)
T ss_dssp             HHHHHHHHHHTTCEEETTCCEEEEEEE-TT-EEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCT
T ss_pred             HHHHHHHHHhCCCEEEcCCEEEEEEEe-CC-EEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECC
Confidence            999999999999999999999999863 33 3346665 568999999999999999874  23 33555 467899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  239 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  239 (356)
                      ++||+.|+|||+|||+..+.          .+..|..||+.+|.||++......+..+|  +..+++..++++|+++.++
T Consensus       296 ~~~t~~~~iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p--~~~~~~~~~a~vG~~~~~a  363 (467)
T 1zk7_A          296 GMRTSNPNIYAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMP--AVVFTDPQVATVGYSEAEA  363 (467)
T ss_dssp             TCBCSSTTEEECSTTBSSCC----------CHHHHHHHHHHHHHHHTTCCCCCCCTTCE--EEECSSSEEEEEECCHHHH
T ss_pred             CcccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCCcccCCCCCC--EEEecCCceEEEecCHHHH
Confidence            99999999999999998653          46789999999999999864323444555  4556788999999876532


Q ss_pred             -------EE--Ec---------cCCCCceEEEEee--CCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCC
Q 018416          240 -------VH--YG---------NFSGTTFGAYWVN--KGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG  298 (356)
Q Consensus       240 -------~~--~g---------~~~~~~~~~~~~~--~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~  298 (356)
                             ..  ..         ..+..+|.+++.+  +|+|+|++++|+.+.+ ++.++.||++++|++||.++.    .
T Consensus       364 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~----~  439 (467)
T 1zk7_A          364 HHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQL----F  439 (467)
T ss_dssp             HHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSC----C
T ss_pred             HhcCCCeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc----c
Confidence                   11  10         1123457777664  8999999999988655 577899999999999998876    3


Q ss_pred             cccCcCCC
Q 018416          299 FALAVSQK  306 (356)
Q Consensus       299 yap~~~~~  306 (356)
                      .+|.+++.
T Consensus       440 ~~pt~~e~  447 (467)
T 1zk7_A          440 PYLTMVEG  447 (467)
T ss_dssp             CTTSTTHH
T ss_pred             CCCCHHHH
Confidence            45666554

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=1.3e-35  Score=295.75  Aligned_cols=276  Identities=18%  Similarity=0.220  Sum_probs=213.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.. ++   +.+++..+    . ..+++++|||+|++|+|+|..|+++|.+||++++ +.+++. +|+++
T Consensus       161 ~p~~p~i~G~~~~-~~---~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~-~~~l~~-~d~~~  229 (483)
T 3dgh_A          161 RPRYPDIPGAVEY-GI---TSDDLFSL----D-REPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR-SIVLRG-FDQQM  229 (483)
T ss_dssp             EECCCSSTTHHHH-CB---CHHHHTTC----S-SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEES-SCSSTT-SCHHH
T ss_pred             CcCCCCCCCcccc-cC---cHHHHhhh----h-hcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeC-CCCCcc-cCHHH
Confidence            4677788887522 22   33443322    1 2578999999999999999999999999999998 467776 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc-----EEecCeEEEecCCCCCchhh--hc-ccccccCcE
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLF--EG-QLTLEKGGI  155 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-----~i~~D~vi~a~G~~p~~~l~--~~-~l~~~~g~I  155 (356)
                      .+.+.+.|+++||++++++.+++++..+++.+ .+++.+++     ++++|.|++++|++|+++++  +. ++..++|+|
T Consensus       230 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i  308 (483)
T 3dgh_A          230 AELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKI  308 (483)
T ss_dssp             HHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBB
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEE
Confidence            99999999999999999999999987545543 46665543     79999999999999999876  33 366645999


Q ss_pred             EEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEEeec
Q 018416          156 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGD  234 (356)
Q Consensus       156 ~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~~G~  234 (356)
                      .||+++||+.|+|||+|||+....         .++..|..||+.||+||+|.... ..+..+|++  .+.+..++++|+
T Consensus       309 ~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~--~~~~p~~a~vGl  377 (483)
T 3dgh_A          309 PVDSQEATNVANIYAVGDIIYGKP---------ELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT--VFTPLEYACVGL  377 (483)
T ss_dssp             CCCTTCBCSSTTEEECSTTBTTSC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEE--ECSSSEEEEEEC
T ss_pred             EECcCCccCCCCEEEEEcccCCCC---------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEE--EECCCccEEEeC
Confidence            999999999999999999985321         45778999999999999987532 355667754  456778999999


Q ss_pred             ccceEEE----------E---cc-----C---CCCceEEEEe--e-CCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcH
Q 018416          235 NVGEVVH----------Y---GN-----F---SGTTFGAYWV--N-KGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDL  289 (356)
Q Consensus       235 ~~~~~~~----------~---g~-----~---~~~~~~~~~~--~-~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl  289 (356)
                      ++.++..          .   ..     .   ...+|.|+..  + +|+|||+|++|+++.+ ++.++.||++++|++||
T Consensus       378 te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l  457 (483)
T 3dgh_A          378 SEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTL  457 (483)
T ss_dssp             CHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHH
T ss_pred             CHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence            8754321          0   00     0   1234777655  3 6999999999998665 57889999999999999


Q ss_pred             HHHhhcCCCcccCcCCC
Q 018416          290 AELETQGLGFALAVSQK  306 (356)
Q Consensus       290 ~~l~~~~~~yap~~~~~  306 (356)
                      .++.    .++|++++.
T Consensus       458 ~~~~----~~hPt~~e~  470 (483)
T 3dgh_A          458 INTV----GIHPTTAEE  470 (483)
T ss_dssp             HTSC----CCSSCSGGG
T ss_pred             hhcc----cCCCChHHH
Confidence            8865    677888776

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=9.1e-36  Score=297.66  Aligned_cols=275  Identities=15%  Similarity=0.103  Sum_probs=212.8

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|..++++|.+.+++++   .+++..+    . ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. +|+++
T Consensus       147 ~p~~p~~~~~~~~~v~t---~~~~~~~----~-~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~  217 (492)
T 3ic9_A          147 RPNYPEFLAAAGSRLLT---NDNLFEL----N-DLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-QDEEM  217 (492)
T ss_dssp             ECCCCHHHHTTGGGEEC---HHHHTTC----S-SCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-CCHHH
T ss_pred             CCcCCCCCCccCCcEEc---HHHHhhh----h-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-CCHHH
Confidence            45556655554455653   3333221    1 25899999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC--CC--cEEecCeEEEecCCCCCchh--hhc-cccc-ccCcE
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGI  155 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~vi~a~G~~p~~~l--~~~-~l~~-~~g~I  155 (356)
                      .+.+.+.|++. |++++++++++++.++ +.+ .+.+.  +|  +++++|.|++|+|++|++++  ++. ++.. ++|+|
T Consensus       218 ~~~l~~~l~~~-V~i~~~~~v~~i~~~~-~~v-~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i  294 (492)
T 3ic9_A          218 KRYAEKTFNEE-FYFDAKARVISTIEKE-DAV-EVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSP  294 (492)
T ss_dssp             HHHHHHHHHTT-SEEETTCEEEEEEECS-SSE-EEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCB
T ss_pred             HHHHHHHHhhC-cEEEECCEEEEEEEcC-CEE-EEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCE
Confidence            99999999998 9999999999998743 333 35553  67  67999999999999999986  433 3665 57889


Q ss_pred             EEe-cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCC--CCCCCCeEEEEecCceEEEe
Q 018416          156 KVT-GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTD--KFDYLPFFYSRVFTLSWQFY  232 (356)
Q Consensus       156 ~vd-~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~--~~~~~p~~~~~~~~~~~~~~  232 (356)
                      .|| +++||+.|+|||+|||+..+          +++..|..||+.||.||++.....  .+..+|  +..++++.++++
T Consensus       295 ~vd~~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p--~~~~~~p~~a~v  362 (492)
T 3ic9_A          295 LFDELTLQTSVDHIFVAGDANNTL----------TLLHEAADDGKVAGTNAGAYPVIAQGQRRAPL--SVVFTEPQVASV  362 (492)
T ss_dssp             CCCTTTCBCSSTTEEECGGGGTSS----------CSHHHHHHHHHHHHHHHHHTTSCCEECCCCCE--EEECSSSEEEEE
T ss_pred             eECcccccCCCCCEEEEEecCCCC----------ccHHHHHHHHHHHHHHHcCCCCCcccCCCCCc--EEEECCCCeEEe
Confidence            999 99999999999999999764          457789999999999999743212  333344  455668899999


Q ss_pred             ecccceEEEE-----------c-----c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCc
Q 018416          233 GDNVGEVVHY-----------G-----N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVV  286 (356)
Q Consensus       233 G~~~~~~~~~-----------g-----~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~  286 (356)
                      |+++.++...           +     .       ....+|.|+..  ++|+|||+|++|+++.+ ++.++.||++++|+
T Consensus       363 Glte~~a~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~  442 (492)
T 3ic9_A          363 GLSLRQIEDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTV  442 (492)
T ss_dssp             ESCHHHHHHHCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBH
T ss_pred             cCCHHHHHhccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCH
Confidence            9987543221           1     0       11235777655  58999999999998766 57789999999999


Q ss_pred             CcHHHHhhcCCCcccCcCCC
Q 018416          287 EDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       287 ~dl~~l~~~~~~yap~~~~~  306 (356)
                      +||.++.    ..+|.+++.
T Consensus       443 ~~l~~~~----~~hPt~~e~  458 (492)
T 3ic9_A          443 QAMLTMP----FYHPVIEEG  458 (492)
T ss_dssp             HHHTTSC----CCTTCTHHH
T ss_pred             HHHhhCC----CCCCChHHH
Confidence            9998766    466776665

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=2.3e-35  Score=291.74  Aligned_cols=276  Identities=21%  Similarity=0.228  Sum_probs=218.2

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.++++   +..++..+    . ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++
T Consensus       140 ~p~~~~~~g~~~~~v~---~~~~~~~~----~-~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~  210 (455)
T 2yqu_A          140 APLIPPWAQVDYERVV---TSTEALSF----P-EVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-MDLEV  210 (455)
T ss_dssp             EECCCTTBCCCSSSEE---CHHHHTCC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHH
T ss_pred             CCCCCCCCCCCcCcEe---chHHhhcc----c-cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-cCHHH
Confidence            4677788887655665   33444322    1 14799999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchh--hhc-cccc-ccCcEEEec
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGIKVTG  159 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l--~~~-~l~~-~~g~I~vd~  159 (356)
                      .+.+.+.++++||++++++++++++.+++ . ..+++++|+++++|.||+|+|++|++.+  ++. ++.. .+|+|.||+
T Consensus       211 ~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~-~-v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~  288 (455)
T 2yqu_A          211 SRAAERVFKKQGLTIRTGVRVTAVVPEAK-G-ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDE  288 (455)
T ss_dssp             HHHHHHHHHHHTCEEECSCCEEEEEEETT-E-EEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCT
T ss_pred             HHHHHHHHHHCCCEEEECCEEEEEEEeCC-E-EEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECC
Confidence            99999999999999999999999986333 2 4567778889999999999999999986  343 3555 467899999


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  239 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  239 (356)
                      ++||+.|+|||+|||+..+          .++..|..||+.+|.||++......+..+|  +..+++..++.+|.++.++
T Consensus       289 ~~~t~~~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p--~~~~~~~~~a~~G~~~~~a  356 (455)
T 2yqu_A          289 HLRTRVPHIYAIGDVVRGP----------MLAHKASEEGIAAVEHMVRGFGHVDYQAIP--SVVYTHPEIAAVGYTEEEL  356 (455)
T ss_dssp             TSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSCCCCCGGGCC--EEECSSSEEEEEECCHHHH
T ss_pred             CcccCCCCEEEEecCCCCc----------cCHHHHHHhHHHHHHHHcCCCccCCCCCCC--EEEEcCCceEEEECCHHHH
Confidence            9999999999999999754          357789999999999999864323344456  4567888999999876432


Q ss_pred             ------EEEc------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCC
Q 018416          240 ------VHYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG  298 (356)
Q Consensus       240 ------~~~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~  298 (356)
                            +..+            ..+..+|.++..  ++|+|+|++++|+.+.+ ++.++.+|++++|++|+.++.    .
T Consensus       357 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~----~  432 (455)
T 2yqu_A          357 KAQGIPYKVGKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAP----H  432 (455)
T ss_dssp             HHHTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSC----C
T ss_pred             HHcCCCEEEEEEEcccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc----c
Confidence                  1111            112235777766  48999999999987655 577899999999999998765    5


Q ss_pred             cccCcCCC
Q 018416          299 FALAVSQK  306 (356)
Q Consensus       299 yap~~~~~  306 (356)
                      ++|++++.
T Consensus       433 ~~Pt~~e~  440 (455)
T 2yqu_A          433 AHPSLSEI  440 (455)
T ss_dssp             CSSCTHHH
T ss_pred             CCCCHHHH
Confidence            66888765

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=4.2e-35  Score=292.90  Aligned_cols=280  Identities=23%  Similarity=0.353  Sum_probs=222.6

Q ss_pred             CCccCCCCCCC----CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHH----CCCcEEEEeeCCccC
Q 018416            4 KLEEFGLSGSD----AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVI----NKINVTMVFPEAHCM   75 (356)
Q Consensus         4 ~p~~~~ipG~~----~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~----~G~~Vtlv~~~~~~l   75 (356)
                      +|+.++++|..    .++++++++++|+.++++.+.  .+++++|||+|++|+|+|..|++    .|.+|+++++.+.++
T Consensus       143 ~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~--~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~  220 (493)
T 1m6i_A          143 TPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISR--EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM  220 (493)
T ss_dssp             EECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHHHH--HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT
T ss_pred             CCCCCCCcccccccccCceEEEcCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc
Confidence            45555555532    358999999999999988776  57999999999999999999987    578999999998888


Q ss_pred             CccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccc--c
Q 018416           76 ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLE--K  152 (356)
Q Consensus        76 ~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~--~  152 (356)
                      ++.+++++.+.+.+.++++||+++++++|++++.+ ++.+ .+++.+|+++++|.||+++|++||+++++.. +..+  +
T Consensus       221 ~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~-~~~~-~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~  298 (493)
T 1m6i_A          221 GKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDF  298 (493)
T ss_dssp             TTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTT
T ss_pred             cccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEec-CCeE-EEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCC
Confidence            87789999999999999999999999999999863 3433 6888999999999999999999999987654 6553  4


Q ss_pred             CcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEec-CceEEE
Q 018416          153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQF  231 (356)
Q Consensus       153 g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~-~~~~~~  231 (356)
                      |+|.||++||| .|+|||+|||+..++..+|.. +++++..|..||+.||.||+|..  .+|...|+||+.++ +..+..
T Consensus       299 ggi~Vd~~l~t-~~~IyA~GD~a~~~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g~~--~~~~~~~~~~s~~~~~~~~~~  374 (493)
T 1m6i_A          299 GGFRVNAELQA-RSNIWVAGDAACFYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAA--KPYWHQSMFWSDLGPDVGYEA  374 (493)
T ss_dssp             CSEECCTTCEE-ETTEEECGGGEEEEETTTEEE-CCCCHHHHHHHHHHHHHHHTSCC--CCCCCCCEEEEESSTTCEEEE
T ss_pred             CcEEECCCccc-CCCeeEeeeeEeccCcccCcc-ccchHHHHHHHHHHHHHHhcCCC--CCcCCcCceeeeeccCcceEE
Confidence            89999999998 699999999999876655543 56789999999999999999875  57888999999987 343444


Q ss_pred             e----------ecccc-----e------------------------EEEE----ccC-------CCCceEEEEeeCCeEE
Q 018416          232 Y----------GDNVG-----E------------------------VVHY----GNF-------SGTTFGAYWVNKGRLV  261 (356)
Q Consensus       232 ~----------G~~~~-----~------------------------~~~~----g~~-------~~~~~~~~~~~~g~il  261 (356)
                      +          |...+     +                        ....    ++.       ...+|.++++++|+|+
T Consensus       375 ~g~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (493)
T 1m6i_A          375 IGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVV  454 (493)
T ss_dssp             EECCCTTSCEEEEEECCCTTCSHHHHHHHHSCSCHHHHSCSCCCC--------------------CCEEEEEEEETTEEE
T ss_pred             EeccCCCcceEEeecccccccccccccccccccccccccccccccccccccccccccccccccccCCcEEEEEEeCCEEE
Confidence            4          32110     0                        0000    110       1123566889999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHcCCCcCcHHHH
Q 018416          262 GSFLEGGTKEEYEAIAKATRLQPVVEDLAEL  292 (356)
Q Consensus       262 Ga~~vg~~~~~~~~~a~ai~~~~~~~dl~~l  292 (356)
                      |+.++|. ...+..+..+|+.+.+++++.++
T Consensus       455 g~~~~~~-~~~~~~~~~li~~~~~~~~~~~~  484 (493)
T 1m6i_A          455 GIVLWNI-FNRMPIARKIIKDGEQHEDLNEV  484 (493)
T ss_dssp             EEEEESC-CSCHHHHHHHHHHCCBCSCSTTG
T ss_pred             EEEEecC-cchHHHHHHHHhCCCCCCCHHHH
Confidence            9999995 44567778899999998888765

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=2.4e-35  Score=293.94  Aligned_cols=250  Identities=20%  Similarity=0.252  Sum_probs=205.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||+++++++|++++.+ ++.+ .
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~-~~~v-~  266 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN-FDYDLRQLLNDAMVAKGISIIYEATVSQVQST-ENCY-N  266 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEESSCCEEEEEEC-SSSE-E
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEee-CCEE-E
Confidence            5899999999999999999999999999999999999987 89999999999999999999999999999874 3333 6


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchh--hh-ccccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHH
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS  193 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l--~~-~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~  193 (356)
                      +.+.+|+++++|.||+|+|++|++.+  ++ .++.. ++|+|.||+++||+.|+|||+|||+..+          .++..
T Consensus       267 v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~  336 (484)
T 3o0h_A          267 VVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGHI----------QLTPV  336 (484)
T ss_dssp             EEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGTSC----------CCHHH
T ss_pred             EEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCC----------cCHHH
Confidence            88899999999999999999999985  33 34666 5688999999999999999999999743          45778


Q ss_pred             HHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEEeecccceEEEEc------------------cCCCCceEEEE
Q 018416          194 ARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYW  254 (356)
Q Consensus       194 A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~  254 (356)
                      |..||+.+|+||++.... ..+..+|+.+  ++++.++++|+++.++...|                  ..+..+|.|+.
T Consensus       337 A~~~g~~aa~~i~~~~~~~~~~~~~p~~~--~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  414 (484)
T 3o0h_A          337 AIHDAMCFVKNAFENTSTTPDYDLITTAV--FSQPEIGTVGLSEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMKLV  414 (484)
T ss_dssp             HHHHHHHHHHHHHC---CCCCCTTCCEEE--CCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHTCCCCEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCCcCCCCCCcEEE--ECCCCEEEeeCCHHHHHHcCCCEEEEEecCCcchhhccCCCCcEEEEEE
Confidence            999999999999986432 3566677644  56788999999886432111                  01123476665


Q ss_pred             e--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          255 V--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       255 ~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      .  ++|+|||+|++|+.+.+ ++.++.||++++|++||.++.    .++|.+++.
T Consensus       415 ~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  465 (484)
T 3o0h_A          415 VDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTM----AVHPTMSEE  465 (484)
T ss_dssp             EETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSC----CCSSCSGGG
T ss_pred             EECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccc----cCCCChHHH
Confidence            4  58999999999988655 578899999999999998865    667777776

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=3.8e-35  Score=295.03  Aligned_cols=277  Identities=19%  Similarity=0.284  Sum_probs=210.5

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+. .+   .+.+++..+    . ..+++++|||+|++|+|+|..|+++|.+||++++. .+++. +|+++
T Consensus       184 ~p~~p~i~G~~~-~~---~t~~~~~~l----~-~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~  252 (519)
T 3qfa_A          184 RPRYLGIPGDKE-YC---ISSDDLFSL----P-YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDM  252 (519)
T ss_dssp             EECCCCCTTHHH-HC---BCHHHHTTC----S-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHHH
T ss_pred             CcCCCCCCCccC-ce---EcHHHHhhh----h-hcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-ccccc-CCHHH
Confidence            567778888642 22   234444332    1 25789999999999999999999999999999985 67776 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCC---CcE-EEEEeCCC-c--EEecCeEEEecCCCCCchh--hhc-cccc--c
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSN---GKV-VAVNLRDG-N--RLPTDMVVVGIGIRPNTSL--FEG-QLTL--E  151 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~---g~v-~~v~~~~g-~--~i~~D~vi~a~G~~p~~~l--~~~-~l~~--~  151 (356)
                      .+.+.+.|+++||++++++.+++++..++   +.+ ..+...+| +  ++++|.|++++|++||+++  ++. ++..  .
T Consensus       253 ~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~  332 (519)
T 3qfa_A          253 ANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEK  332 (519)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTT
T ss_pred             HHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCC
Confidence            99999999999999999988888765322   322 22334555 2  5789999999999999985  333 3555  3


Q ss_pred             cCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEE
Q 018416          152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQ  230 (356)
Q Consensus       152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~  230 (356)
                      +|+|.||+++||+.|+|||+|||+...         ..++..|..||+.||+||++.... ..+..+|+  ..++++.++
T Consensus       333 ~G~I~Vd~~~~Ts~~~IyA~GD~~~g~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a  401 (519)
T 3qfa_A          333 TGKIPVTDEEQTNVPYIYAIGDILEDK---------VELTPVAIQAGRLLAQRLYAGSTVKCDYENVPT--TVFTPLEYG  401 (519)
T ss_dssp             TCCBCCCTTSBCSSTTEEECGGGBSSS---------CCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCE--EECSSSCEE
T ss_pred             CCeEeeCCCCccCCCCEEEEEeccCCC---------CccHHHHHHHHHHHHHHHcCCCCccCCCCcCcE--EEECCCceE
Confidence            688999999999999999999998432         146778999999999999986532 34555664  556788999


Q ss_pred             EeecccceEEE-------------Ecc--------CCCCceEEEEee---CCeEEEEEEeCCCHHH-HHHHHHHHHcCCC
Q 018416          231 FYGDNVGEVVH-------------YGN--------FSGTTFGAYWVN---KGRLVGSFLEGGTKEE-YEAIAKATRLQPV  285 (356)
Q Consensus       231 ~~G~~~~~~~~-------------~g~--------~~~~~~~~~~~~---~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~  285 (356)
                      .+|+++.++..             +..        ....+|.|+..+   +|+|||+|++|+++.+ ++.++.||++++|
T Consensus       402 ~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~t  481 (519)
T 3qfa_A          402 ACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLT  481 (519)
T ss_dssp             EEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTCB
T ss_pred             EecCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC
Confidence            99998754321             100        012357776652   6999999999998655 5778999999999


Q ss_pred             cCcHHHHhhcCCCcccCcCCC
Q 018416          286 VEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       286 ~~dl~~l~~~~~~yap~~~~~  306 (356)
                      ++||.++.    .++|++++.
T Consensus       482 ~~~l~~~~----~~hPt~~E~  498 (519)
T 3qfa_A          482 KKQLDSTI----GIHPVCAEV  498 (519)
T ss_dssp             HHHHHHSC----CCTTCGGGG
T ss_pred             HHHHhccc----cCCCChHHH
Confidence            99998765    677888777

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=4.8e-35  Score=292.07  Aligned_cols=276  Identities=21%  Similarity=0.251  Sum_probs=211.6

Q ss_pred             CCccCC-CCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            4 KLEEFG-LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~~-ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|..++ +||.+. .++   +.+++..+    . ..+++++|||+|++|+|+|..|+++|.+||++++. .+++. +|++
T Consensus       158 ~p~~p~~i~G~~~-~~~---~~~~~~~~----~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~  226 (488)
T 3dgz_A          158 RPRYPTQVKGALE-YGI---TSDDIFWL----K-ESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS-IPLRG-FDQQ  226 (488)
T ss_dssp             EECCCSSCBTHHH-HCB---CHHHHTTC----S-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHH
T ss_pred             CCCCCCCCCCccc-ccC---cHHHHHhh----h-hcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC-ccccc-CCHH
Confidence            467777 888642 222   33443332    1 25789999999999999999999999999999986 46776 8999


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC---Cc--EEecCeEEEecCCCCCchhh--hc-ccccc--c
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLF--EG-QLTLE--K  152 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g~--~i~~D~vi~a~G~~p~~~l~--~~-~l~~~--~  152 (356)
                      +.+.+.+.|+++||++++++.+++++..+++.+ .+++.+   |+  ++++|.|++++|++|+++++  +. ++..+  +
T Consensus       227 ~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~  305 (488)
T 3dgz_A          227 MSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKN  305 (488)
T ss_dssp             HHHHHHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSS
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCC
Confidence            999999999999999999999999987444433 344433   54  47999999999999999874  33 35553  6


Q ss_pred             CcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEE
Q 018416          153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQF  231 (356)
Q Consensus       153 g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~  231 (356)
                      |+|.||++|||+.|+|||+|||+....         .++..|..||+.||.||++.... ..+..+|++  .+.++.+++
T Consensus       306 G~i~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~--~~~~p~~a~  374 (488)
T 3dgz_A          306 QKIIVDAQEATSVPHIYAIGDVAEGRP---------ELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTT--VFTPLEYGC  374 (488)
T ss_dssp             CCBCCCTTSBCSSTTEEECGGGBTTCC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEE--ECSSSEEEE
T ss_pred             CeEeECCCCccCCCCEEEeEEecCCCC---------cchhHHHHHHHHHHHHHcCCCCccCCCCCCCEE--EECCCCeEE
Confidence            889999999999999999999985321         45778999999999999986532 345567754  456788999


Q ss_pred             eecccceEEE--------Ec-----c-----C---CCCceEEEEe---eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCc
Q 018416          232 YGDNVGEVVH--------YG-----N-----F---SGTTFGAYWV---NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVV  286 (356)
Q Consensus       232 ~G~~~~~~~~--------~g-----~-----~---~~~~~~~~~~---~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~  286 (356)
                      +|+++.++..        ..     .     .   ...+|.|+..   ++|+|||+|++|+++.+ ++.++.||++++|+
T Consensus       375 vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~  454 (488)
T 3dgz_A          375 VGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASY  454 (488)
T ss_dssp             EECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBH
T ss_pred             EeCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCH
Confidence            9998754211        10     0     1   1235777654   37999999999988655 57889999999999


Q ss_pred             CcHHHHhhcCCCcccCcCCC
Q 018416          287 EDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       287 ~dl~~l~~~~~~yap~~~~~  306 (356)
                      +||.++.    .++|++++.
T Consensus       455 ~~l~~~~----~~hPt~~e~  470 (488)
T 3dgz_A          455 AQVMQTV----GIHPTCSEE  470 (488)
T ss_dssp             HHHHTSC----CCSSCSTHH
T ss_pred             HHHhccc----cCCCChHHH
Confidence            9998855    678888877

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.4e-34  Score=284.84  Aligned_cols=248  Identities=21%  Similarity=0.253  Sum_probs=200.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.|+++||++++++++++++.   +. ..
T Consensus       170 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~---~~-v~  244 (458)
T 1lvl_A          170 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYEN---GC-LL  244 (458)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEEET---TE-EE
T ss_pred             cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEe---CC-EE
Confidence            4799999999999999999999999999999999999985 8999999999999999999999999999974   32 33


Q ss_pred             EEeCCC--cEEecCeEEEecCCCCCchh--hhc-ccccccCcEEEecccccCCCCEEEEccccccCccccCcccccccHH
Q 018416          118 VNLRDG--NRLPTDMVVVGIGIRPNTSL--FEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD  192 (356)
Q Consensus       118 v~~~~g--~~i~~D~vi~a~G~~p~~~l--~~~-~l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~  192 (356)
                      ++..+|  +++++|.|++++|++|++++  ++. ++..++++|.||++|||+.|+|||+|||+..+          .++.
T Consensus       245 v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~  314 (458)
T 1lvl_A          245 ANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEP----------MLAH  314 (458)
T ss_dssp             EECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSS----------CCHH
T ss_pred             EEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCCCcCCCCCEEEeeccCCCc----------ccHH
Confidence            444456  68999999999999999985  333 35543229999999999999999999999854          3577


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE------EEEc------------cCCCCceEEEE
Q 018416          193 SARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV------VHYG------------NFSGTTFGAYW  254 (356)
Q Consensus       193 ~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------~~~g------------~~~~~~~~~~~  254 (356)
                      .|..||+.+|.||++......+..+|  +..+++..++++|.++.++      +..+            ..+..+|.+++
T Consensus       315 ~A~~~g~~aa~~i~g~~~~~~~~~~p--~~~~~~p~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~  392 (458)
T 1lvl_A          315 RAMAQGEMVAEIIAGKARRFEPAAIA--AVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVV  392 (458)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCSCCC--EEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCccCCCCCCC--EEEECCCCeEEEeCCHHHHHHcCCCEEEEEEECccchhhhhcCCCcEEEEEE
Confidence            89999999999999854333344556  4567888999999876432      1111            11223577776


Q ss_pred             e--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          255 V--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       255 ~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      .  ++++|+|++++|+.+.+ ++.++.+|++++|++||.++.    .++|++++.
T Consensus       393 ~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~----~~~Pt~~e~  443 (458)
T 1lvl_A          393 ARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTI----HAHPTLGEA  443 (458)
T ss_dssp             EETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSC----CCTTCTTHH
T ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----CCCCCHHHH
Confidence            6  58999999999987654 678899999999999988765    678888764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=3.4e-34  Score=292.75  Aligned_cols=277  Identities=20%  Similarity=0.273  Sum_probs=210.3

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+. .+++   .+++..+    . ..+++++|||||++|+|+|..|+++|.+||++++. .+++. +|+++
T Consensus       260 ~p~~p~i~G~~~-~~~~---~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~  328 (598)
T 2x8g_A          260 RPKYPEIPGAVE-YGIT---SDDLFSL----P-YFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRG-FDQQM  328 (598)
T ss_dssp             EECCCSSTTHHH-HCEE---HHHHTTC----S-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHHH
T ss_pred             CCCCCCCCCccc-ceEc---HHHHhhC----c-cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCc-CCHHH
Confidence            577788888642 2332   2332211    1 25789999999999999999999999999999998 67776 89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEc-----CC---CcE-EEEEeCCCcEEe--cCeEEEecCCCCCchhh--hc-ccc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVD-----SN---GKV-VAVNLRDGNRLP--TDMVVVGIGIRPNTSLF--EG-QLT  149 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~-----~~---g~v-~~v~~~~g~~i~--~D~vi~a~G~~p~~~l~--~~-~l~  149 (356)
                      .+.+.+.|+++||++++++.+++++..     ++   +.+ ..+.+.+|++++  +|.|++++|++||++++  +. ++.
T Consensus       329 ~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~  408 (598)
T 2x8g_A          329 AEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVK  408 (598)
T ss_dssp             HHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCC
T ss_pred             HHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCce
Confidence            999999999999999999988888642     12   333 223456787655  99999999999999864  32 365


Q ss_pred             c-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCc
Q 018416          150 L-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTL  227 (356)
Q Consensus       150 ~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~  227 (356)
                      . ++|+|.||++|||+.|+|||+|||+....         .++..|.+||+.||.+|++... ...+..+|+  ..++++
T Consensus       409 ~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~--~~~~~~  477 (598)
T 2x8g_A          409 LDKNGRVVCTDDEQTTVSNVYAIGDINAGKP---------QLTPVAIQAGRYLARRLFAGATELTDYSNVAT--TVFTPL  477 (598)
T ss_dssp             BCTTSCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCE--EECSSS
T ss_pred             ECCCCcEEeCCCCcCCCCCEEEEeeecCCCC---------ccHHHHHHhHHHHHHHHhcCCCcccCCCCCcE--EEECCC
Confidence            5 56889999999999999999999965321         4677899999999999997543 234555664  456788


Q ss_pred             eEEEeecccceEE--------EEc-----c--------CCCCceEEEEee---CCeEEEEEEeCCCHHH-HHHHHHHHHc
Q 018416          228 SWQFYGDNVGEVV--------HYG-----N--------FSGTTFGAYWVN---KGRLVGSFLEGGTKEE-YEAIAKATRL  282 (356)
Q Consensus       228 ~~~~~G~~~~~~~--------~~g-----~--------~~~~~~~~~~~~---~g~ilGa~~vg~~~~~-~~~~a~ai~~  282 (356)
                      .++++|+++.++.        ...     .        ....+|.++..+   +|+|+|+|++|+.+.+ ++.++.||++
T Consensus       478 ~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~  557 (598)
T 2x8g_A          478 EYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKM  557 (598)
T ss_dssp             CEEEEECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHHT
T ss_pred             ceEEEeCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence            8999998764321        110     0        112347776653   8999999999987655 5788999999


Q ss_pred             CCCcCcHHHHhhcCCCcccCcCCC
Q 018416          283 QPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       283 ~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      ++|++||.++    +.++|++++.
T Consensus       558 ~~t~~~l~~~----~~~hPt~~e~  577 (598)
T 2x8g_A          558 GATKADFDRT----IGIHPTCSET  577 (598)
T ss_dssp             TCBHHHHHHS----CCCSSCSGGG
T ss_pred             CCCHHHHhhc----cccCCCHHHH
Confidence            9999999884    5788888887

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.95  E-value=2.5e-28  Score=244.26  Aligned_cols=192  Identities=20%  Similarity=0.321  Sum_probs=160.1

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcC---------------CCCcEEEECCchHHHHHHHHHHHC-------
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVIN-------   61 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~---------------~~~~vvVvGgG~iGlE~A~~L~~~-------   61 (356)
                      +|+.+++||.+ ++.+++++++|+.++++.+...               ...+++|||||++|+|+|..|+++       
T Consensus       168 ~~~~~~ipG~~-e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~  246 (502)
T 4g6h_A          168 EPNTFGIPGVT-DYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRK  246 (502)
T ss_dssp             EECCTTCTTHH-HHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHH
T ss_pred             ccccCCccCcc-cccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHh
Confidence            57889999985 6789999999999998765311               124799999999999999999864       


Q ss_pred             -------CCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc----EEecCe
Q 018416           62 -------KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN----RLPTDM  130 (356)
Q Consensus        62 -------G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~----~i~~D~  130 (356)
                             ..+||++++.+++++. +++++++.+++.|+++||+++++++|++++.  ++.+....+.||+    ++++|+
T Consensus       247 ~~~~~~~~~~V~lve~~~~il~~-~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~dg~~~~~~i~ad~  323 (502)
T 4g6h_A          247 FLPALAEEVQIHLVEALPIVLNM-FEKKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHEDGKITEETIPYGT  323 (502)
T ss_dssp             HCHHHHHHCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECTTSCEEEEEEECSE
T ss_pred             hcccccccceeEEeccccccccC-CCHHHHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEecCcccceeeeccCE
Confidence                   3689999999999997 8999999999999999999999999999963  4444455566764    699999


Q ss_pred             EEEecCCCCCch---hhhc-cccc-ccCcEEEeccccc-CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHH
Q 018416          131 VVVGIGIRPNTS---LFEG-QLTL-EKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA  204 (356)
Q Consensus       131 vi~a~G~~p~~~---l~~~-~l~~-~~g~I~vd~~l~t-s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~  204 (356)
                      ||||+|++|+..   +... .... .+|+|.||++||| ++|+|||+|||+..+.+        +.++.|++||+.+|+|
T Consensus       324 viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p--------~~a~~A~qqg~~~A~n  395 (502)
T 4g6h_A          324 LIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLP--------PTAQVAHQEAEYLAKN  395 (502)
T ss_dssp             EEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSC--------CCHHHHHHHHHHHHHH
T ss_pred             EEEccCCcCCHHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCC--------CchHHHHHHHHHHHHH
Confidence            999999999953   3332 2333 5689999999999 89999999999987654        6788999999999999


Q ss_pred             HcC
Q 018416          205 IME  207 (356)
Q Consensus       205 i~g  207 (356)
                      |.+
T Consensus       396 i~~  398 (502)
T 4g6h_A          396 FDK  398 (502)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            854

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.92  E-value=1.5e-25  Score=209.46  Aligned_cols=184  Identities=19%  Similarity=0.212  Sum_probs=138.0

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+......+............   .++++++|||+|++|+|+|..|+++|.+||++++.+.+..   +++.
T Consensus       120 ~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~---~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~~  193 (314)
T 4a5l_A          120 TAKRMHVPGEDKYWQNGVSACAICDGAVPI---FRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SKTM  193 (314)
T ss_dssp             EECCCCCTTHHHHBTTTEESCHHHHTTSGG---GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH
T ss_pred             cccccCCCccccccccceeeehhhhhhhhh---cCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc---cchh
Confidence            578899999864433333333333322111   2579999999999999999999999999999999877543   3332


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe-----CCCcEEecCeEEEecCCCCCchhhhcccccccCcEEEe
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-----RDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVT  158 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~-----~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~~~g~I~vd  158 (356)
                         ..+.+...+++.+....+.++... +.....+.+     .+++++++|.|++++|++||++++...+...++++.||
T Consensus       194 ---~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~iv~  269 (314)
T 4a5l_A          194 ---QERVLNHPKIEVIWNSELVELEGD-GDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYILT  269 (314)
T ss_dssp             ---HHHHHTCTTEEEECSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCC
T ss_pred             ---hhhhhcccceeeEeeeeeEEEEee-eeccceeEEeecccccceeeccccceEecccccChhHhcccceEcCCeeEeC
Confidence               344556778999999888888763 333333332     34568999999999999999999987666655556699


Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      ++||||+|+|||+|||+..+.         .++..|..||+.||.++.
T Consensus       270 ~~~~Ts~pgIyA~GDv~~~~~---------~~~~~A~~~G~~AA~~~~  308 (314)
T 4a5l_A          270 EGPKTSVDGVFACGDVCDRVY---------RQAIVAAGSGCMAALSCE  308 (314)
T ss_dssp             BTTBCSSTTEEECSTTTCSSC---------CCHHHHHHHHHHHHHHHH
T ss_pred             CCCccCCCCEEEEEeccCCcc---------hHHHHHHHHHHHHHHHHH
Confidence            999999999999999998653         346678999999998874

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.92  E-value=1.7e-24  Score=186.98  Aligned_cols=153  Identities=16%  Similarity=0.131  Sum_probs=129.3

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------cC-----CHHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LF-----TPKIASYYEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------~~-----d~~~~~~~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      +++|||||++|+|+|..|++.|.+|+++++.+.++.+        .+     ++++.+.+.+.+++.||+++++ +++++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            6999999999999999999999999999999876631        12     5789999999999999999999 99999


Q ss_pred             EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh-cccccccCcEEEecccccCCCCEEEEccccccCccccCccc
Q 018416          108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE-GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETR  186 (356)
Q Consensus       108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~-~~l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~  186 (356)
                      +.++++  ..+++++| ++++|.||+|+|.+|+.  .+ .+++.++|.|.||+++||+.|+|||+|||+..+.       
T Consensus        82 ~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~~--~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~-------  149 (180)
T 2ywl_A           82 RDMGGV--FEVETEEG-VEKAERLLLCTHKDPTL--PSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVP-------  149 (180)
T ss_dssp             EECSSS--EEEECSSC-EEEEEEEEECCTTCCHH--HHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCS-------
T ss_pred             EEcCCE--EEEEECCC-EEEECEEEECCCCCCCc--cccCCCCccCceEEeCCCCCcCCCCEEEeecccCcch-------
Confidence            874333  45777888 89999999999999853  22 2344457789999999999999999999998753       


Q ss_pred             ccccHHHHHHHHHHHHHHHcCC
Q 018416          187 RLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       187 ~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                        +++..|..||+.||.||.+.
T Consensus       150 --~~~~~A~~~g~~aa~~i~~~  169 (180)
T 2ywl_A          150 --GHAIISAGDGAYVAVHLVSD  169 (180)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHH
T ss_pred             --hhHHHHHHhHHHHHHHHHHH
Confidence              36788999999999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.92  E-value=2.1e-24  Score=202.16  Aligned_cols=179  Identities=23%  Similarity=0.320  Sum_probs=135.4

Q ss_pred             CCccCCCCCCCC---CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+.   .+++++. ..|..       ..++|+++|||||++|+|+|..|++.|.+||++++++++++..  
T Consensus       115 ~~~~~~ipG~~~~~~~~v~~~~-~~~~~-------~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~--  184 (312)
T 4gcm_A          115 EYKKIGVPGEQELGGRGVSYCA-VCDGA-------FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQR--  184 (312)
T ss_dssp             EECCCCCTTTTTTBTTTEESCH-HHHGG-------GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCH--
T ss_pred             ccCcCCCCChhhhCCccEEeee-ccCcc-------ccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcch--
Confidence            578899999764   2344322 11211       1268999999999999999999999999999999999987741  


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE---EEe--CCCcEEecCeEEEecCCCCCchhhhcc-cccccCc
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA---VNL--RDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGG  154 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~---v~~--~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~  154 (356)
                          ....+.+++.++.......+...... +.....   ...  .++..+++|.|++++|.+|++.++... +..++|+
T Consensus       185 ----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~  259 (312)
T 4gcm_A          185 ----ILQDRAFKNDKIDFIWSHTLKSINEK-DGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGY  259 (312)
T ss_dssp             ----HHHHHHHHCTTEEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSC
T ss_pred             ----hHHHHHHHhcCcceeeecceeeeecc-ccccccceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCe
Confidence                12235677888988888777666542 222111   111  233579999999999999999988766 4457889


Q ss_pred             EEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          155 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       155 I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      |.||++||||+|+|||+|||+..+.         .++..|+.||+.||.+|.
T Consensus       260 I~vd~~~~Ts~pgIyA~GDv~~~~~---------~~~~~A~~~G~~AA~~i~  302 (312)
T 4gcm_A          260 IVTKDDMTTSVPGIFAAGDVRDKGL---------RQIVTATGDGSIAAQSAA  302 (312)
T ss_dssp             BCCCTTSBCSSTTEEECSTTBSCSC---------CSHHHHHHHHHHHHHHHH
T ss_pred             EeeCCCCccCCCCEEEEeecCCCcc---------hHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987432         357789999999999985

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.91  E-value=4e-24  Score=201.79  Aligned_cols=183  Identities=20%  Similarity=0.247  Sum_probs=148.7

Q ss_pred             CCccCCCCCCCC---CCeEE-eCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccC
Q 018416            4 KLEEFGLSGSDA---ENVCY-LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF   79 (356)
Q Consensus         4 ~p~~~~ipG~~~---~~v~~-l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~   79 (356)
                      .|+.+++||.+.   .++++ +++.+          ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++   
T Consensus       123 ~p~~~~i~g~~~~~~~~~~~~~~~~~----------~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---  189 (335)
T 2zbw_A          123 EPRRIGAPGEREFEGRGVYYAVKSKA----------EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---  189 (335)
T ss_dssp             EECCCCCTTTTTTBTTTEESSCSCGG----------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---
T ss_pred             CCCCCCCCChhhccCcEEEEecCchh----------hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---
Confidence            577788888652   23432 23221          12579999999999999999999999999999999988765   


Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---CC--cEEecCeEEEecCCCCCchhhhcc-cccccC
Q 018416           80 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKG  153 (356)
Q Consensus        80 d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g  153 (356)
                      .++..+.+.+.+++.||++++++.+++++.  ++.+..+.+.   +|  +++++|.|++++|++|++++++.. +..++|
T Consensus       190 ~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g  267 (335)
T 2zbw_A          190 HEASVKELMKAHEEGRLEVLTPYELRRVEG--DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKN  267 (335)
T ss_dssp             CHHHHHHHHHHHHTTSSEEETTEEEEEEEE--SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETT
T ss_pred             cHHHHHHHHhccccCCeEEecCCcceeEcc--CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCC
Confidence            467888889999999999999999999986  3444456665   67  579999999999999999877654 555678


Q ss_pred             cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416          154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                      +|.||+++||+.|+|||+|||+..+..       ..++..|..||+.+|.+|.+.
T Consensus       268 ~i~vd~~~~t~~~~vya~GD~~~~~~~-------~~~~~~A~~~g~~aa~~i~~~  315 (335)
T 2zbw_A          268 KIKVDTTMATSIPGVYACGDIVTYPGK-------LPLIVLGFGEAAIAANHAAAY  315 (335)
T ss_dssp             EEECCTTCBCSSTTEEECSTTEECTTC-------CCCHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeCCCCCCCCCCEEEeccccccCcc-------hhhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999986431       256888999999999999764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.91  E-value=1.8e-24  Score=202.79  Aligned_cols=183  Identities=24%  Similarity=0.282  Sum_probs=147.1

Q ss_pred             CCccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+   .++++++.+.++      .+.  .+++++|||+|++|+|+|..|++.|.+||++++.+.+.   .+
T Consensus       115 ~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~--~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~  183 (320)
T 1trb_A          115 SARYLGLPSEEAFKGRGVSACATSDG------FFY--RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AE  183 (320)
T ss_dssp             EECCCCCHHHHHTBTTTEESCHHHHG------GGG--TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CC
T ss_pred             CcCCCCCCChHHhCCceeEecccCCc------ccc--CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc---cC
Confidence            45666777753   134554333222      122  57999999999999999999999999999999988764   37


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC----C--cEEecCeEEEecCCCCCchhhhcccccccCc
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD----G--NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGG  154 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~----g--~~i~~D~vi~a~G~~p~~~l~~~~l~~~~g~  154 (356)
                      +.+.+.+.+.+++.||++++++++++++. +++.+..+++.+    |  +++++|.|++++|++|++++++..+..++|+
T Consensus       184 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~~l~~~~G~  262 (320)
T 1trb_A          184 KILIKRLMDKVENGNIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGY  262 (320)
T ss_dssp             HHHHHHHHHHHHTSSEEEECSCEEEEEEE-CSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTTTSCEETTE
T ss_pred             HHHHHHHHHhcccCCeEEEcCceeEEEEc-CCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhcccccccCce
Confidence            88888899999999999999999999987 344565566654    4  5799999999999999999887555555888


Q ss_pred             EEEeccc-----ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          155 IKVTGRL-----QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       155 I~vd~~l-----~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      |.||++|     +|+.|+|||+|||+..+.         ..+..|..||+.||.+|..
T Consensus       263 i~vd~~~~~~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  311 (320)
T 1trb_A          263 IKVQSGIHGNATQTSIPGVFAAGDVMDHIY---------RQAITSAGTGCMAALDAER  311 (320)
T ss_dssp             ECCCCSSSSCTTBCSSTTEEECGGGGCSSS---------CCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCcccccccCCCCCEEEcccccCCcc---------hhhhhhhccHHHHHHHHHH
Confidence            9999987     899999999999998642         3577899999999999864

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.91  E-value=4.7e-24  Score=199.12  Aligned_cols=179  Identities=24%  Similarity=0.372  Sum_probs=140.5

Q ss_pred             CCccCCCCCCCC---CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+.   +.++++..      +....  ..+++++|||+|++|+|+|..|++.|.+||++++.+++.   ++
T Consensus       114 ~~~~~~~~g~~~~~~~~~~~~~~------~~~~~--~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~  182 (310)
T 1fl2_A          114 KWRNMNVPGEDQYRTKGVTYCPH------CDGPL--FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---AD  182 (310)
T ss_dssp             EECCCCCTTTTTTBTTTEESCHH------HHGGG--GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SC
T ss_pred             CcCCCCCCChhhcccceeEEecc------CcHhh--cCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---cc
Confidence            466677888652   34553321      11122  257999999999999999999999999999999998762   45


Q ss_pred             HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCC---Cc--EEecCeEEEecCCCCCchhhhccccc-ccC
Q 018416           81 PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLFEGQLTL-EKG  153 (356)
Q Consensus        81 ~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g~--~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g  153 (356)
                      +.    +.+.|++ .||+++++++++++.. +++.+..+++.+   |+  ++++|.|++++|++||+++++..+.. ++|
T Consensus       183 ~~----~~~~l~~~~gv~v~~~~~v~~i~~-~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~l~~~~~g  257 (310)
T 1fl2_A          183 QV----LQDKLRSLKNVDIILNAQTTEVKG-DGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMG  257 (310)
T ss_dssp             HH----HHHHHHTCTTEEEESSEEEEEEEE-SSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTS
T ss_pred             HH----HHHHHhhCCCeEEecCCceEEEEc-CCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhccccccCCC
Confidence            43    4556676 6999999999999987 445555566643   53  68999999999999999888765555 568


Q ss_pred             cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      +|.||+++||+.|+|||+|||+..+.         ..+..|+.||+.||.+|..
T Consensus       258 ~i~vd~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  302 (310)
T 1fl2_A          258 EIIIDAKCETNVKGVFAAGDCTTVPY---------KQIIIATGEGAKASLSAFD  302 (310)
T ss_dssp             CBCCCTTCBCSSTTEEECSTTBSCSS---------CCHHHHHHHHHHHHHHHHH
T ss_pred             cEEcCCCCccCCCCEEEeecccCCcc---------hhhhhhHhhHHHHHHHHHH
Confidence            99999999999999999999998653         3577899999999999864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.91  E-value=3.3e-24  Score=200.27  Aligned_cols=179  Identities=18%  Similarity=0.255  Sum_probs=140.4

Q ss_pred             CCccCCCCCCCC---CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+.   ++++++++.++.      .  ..+++++|||+|++|+|+|..|++.|.+||++++.+.+.   .+
T Consensus       113 ~~~~~~~~g~~~~~~~~~~~~~~~~~~------~--~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~  181 (311)
T 2q0l_A          113 SPKRTGIKGESEYWGKGVSTCATCDGF------F--YKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR---CA  181 (311)
T ss_dssp             EECCCCCBTHHHHBTTTEESCHHHHGG------G--GTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SC
T ss_pred             CCCCCCCCChhhccCCcEEEeecCChh------h--cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CC
Confidence            466677888642   456654433221      2  257999999999999999999999999999999998763   35


Q ss_pred             HHHHHHHHHHHH-hCCCEEEeCCeeeEEEEcCCCcEEEEEeC---CCc--EEecCeEEEecCCCCCchhhhcc-----cc
Q 018416           81 PKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEGQ-----LT  149 (356)
Q Consensus        81 ~~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~~l~~~~-----l~  149 (356)
                      +++    .+.+. +.||++++++.++++..+ ++.+..+.+.   +|+  ++++|.|++++|++|++++++..     +.
T Consensus       182 ~~~----~~~l~~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~  256 (311)
T 2q0l_A          182 PIT----LEHAKNNDKIEFLTPYVVEEIKGD-ASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCK  256 (311)
T ss_dssp             HHH----HHHHHTCTTEEEETTEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSC
T ss_pred             HHH----HHHHhhCCCeEEEeCCEEEEEECC-CCcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeE
Confidence            544    34444 479999999999999863 3444456665   675  79999999999999999988754     55


Q ss_pred             c-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          150 L-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       150 ~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      . ++|+|.||+++||+.|+|||+|||+..+.         .++..|..||+.||.+|..
T Consensus       257 ~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  306 (311)
T 2q0l_A          257 CDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP---------KQVVCAASDGATAALSVIS  306 (311)
T ss_dssp             BCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---------CCHHHHHHHHHHHHHHHHH
T ss_pred             eccCCCEEeCCccccCCCCeEEcccccCcch---------HHHHHHHHhHHHHHHHHHH
Confidence            5 56899999999999999999999998531         4688899999999999863

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.91  E-value=5.7e-24  Score=199.67  Aligned_cols=179  Identities=25%  Similarity=0.380  Sum_probs=141.3

Q ss_pred             CCccCCCCCCCC---CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+.   .++++.++.++      ..  ..+++++|||+|++|+|+|..|++.|.+||++++.+.+..   +
T Consensus       125 ~~~~~~i~g~~~~~~~~~~~~~~~~~------~~--~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~  193 (319)
T 3cty_A          125 THKHLGVKGESEYFGKGTSYCSTCDG------YL--FKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---E  193 (319)
T ss_dssp             EECCCCCBTTTTTBTTTEESCHHHHG------GG--GBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS---C
T ss_pred             CcccCCCCChHHhCCceEEEEEecch------hh--cCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC---C
Confidence            466778888653   35554333221      11  1579999999999999999999999999999999887642   4


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---CCc--EEecCeEEEecCCCCCchhhhcc-ccc-ccC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKG  153 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g  153 (356)
                      +.    +.+.+++.||+++++++++++.. +++++..+.+.   +|+  ++++|.||+++|++||+++++.. +.. ++|
T Consensus       194 ~~----l~~~l~~~gv~i~~~~~v~~i~~-~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g  268 (319)
T 3cty_A          194 NA----YVQEIKKRNIPYIMNAQVTEIVG-DGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERG  268 (319)
T ss_dssp             HH----HHHHHHHTTCCEECSEEEEEEEE-SSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTS
T ss_pred             HH----HHHHHhcCCcEEEcCCeEEEEec-CCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCc
Confidence            44    45566689999999999999987 34545556664   665  69999999999999999988754 555 568


Q ss_pred             cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      +|.||++++|+.|+|||+|||+..+.         .++..|+.||+.||.+|..
T Consensus       269 ~i~vd~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  313 (319)
T 3cty_A          269 YIVVDSRQRTSVPGVYAAGDVTSGNF---------AQIASAVGDGCKAALSLYS  313 (319)
T ss_dssp             CBCCCTTCBCSSTTEEECSTTBTTCC---------CCHHHHHHHHHHHHHHHHH
T ss_pred             cEeCCCCCccCCCCEEEeecccCcch---------hhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998632         4678899999999999864

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.91  E-value=7.1e-24  Score=199.56  Aligned_cols=179  Identities=23%  Similarity=0.328  Sum_probs=140.0

Q ss_pred             CCccCCCCCCCC---CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+.   +.++++...++      ..  ..+++++|||+|++|+|+|..|++.|.+||++++.+.+..   +
T Consensus       122 ~~~~~~i~g~~~~~~~~~~~~~~~~~------~~--~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~  190 (325)
T 2q7v_A          122 DPRKLGIPGEDNFWGKGVSTCATCDG------FF--YKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA---N  190 (325)
T ss_dssp             EECCCCCTTTTTTBTTTEESCHHHHG------GG--GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS---C
T ss_pred             CcCCCCCCChhhccCceEEEeccCCH------HH--cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc---c
Confidence            467788888753   34554332221      11  2579999999999999999999999999999999987642   4


Q ss_pred             HHHHHHHHHHHH-hCCCEEEeCCeeeEEEEcCCCcEEEEEeC---CCc--EEecCeEEEecCCCCCchhhhccccc-ccC
Q 018416           81 PKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEGQLTL-EKG  153 (356)
Q Consensus        81 ~~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g  153 (356)
                      +.+    .+.+. +.||+++++++++++..  ++.+..+++.   +|+  ++++|.||+++|++||+++++..+.. ++|
T Consensus       191 ~~~----~~~l~~~~gv~i~~~~~v~~i~~--~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g  264 (325)
T 2q7v_A          191 KVA----QARAFANPKMKFIWDTAVEEIQG--ADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDG  264 (325)
T ss_dssp             HHH----HHHHHTCTTEEEECSEEEEEEEE--SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTS
T ss_pred             hHH----HHHHHhcCCceEecCCceEEEcc--CCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhhcccCCCc
Confidence            443    33344 46999999999999986  3445556664   665  79999999999999999988765554 578


Q ss_pred             cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416          154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                      +|.||++++|+.|+|||+|||+..+.         .++..|..||+.||.+|...
T Consensus       265 ~i~vd~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~  310 (325)
T 2q7v_A          265 YVDVRDEIYTNIPMLFAAGDVSDYIY---------RQLATSVGAGTRAAMMTERQ  310 (325)
T ss_dssp             CBCCBTTTBCSSTTEEECSTTTCSSC---------CCHHHHHHHHHHHHHHHHHH
T ss_pred             cEecCCCCccCCCCEEEeecccCccH---------HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999997631         46888999999999999753

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.91  E-value=8.2e-24  Score=197.24  Aligned_cols=180  Identities=18%  Similarity=0.259  Sum_probs=142.9

Q ss_pred             CCccCCCCCCCC---CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+.   +.+++....+      ...  ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.   .+
T Consensus       117 ~~~~~~~~g~~~~~~~~~~~~~~~~------~~~--~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~---~~  185 (315)
T 3r9u_A          117 APKKAGFKGEDEFFGKGVSTCATCD------GFF--YKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR---AA  185 (315)
T ss_dssp             EECCCCCBTTTTTBTTTEESCHHHH------GGG--GTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB---SC
T ss_pred             CCCCCCCCChhhcCCCeEEeeeccc------ccc--cCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC---CC
Confidence            567788898764   5555332221      111  257999999999999999999999999999999998863   34


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC--CCc--EEecCeEEEecCCCCCchhhhc-----cccc-
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIGIRPNTSLFEG-----QLTL-  150 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~vi~a~G~~p~~~l~~~-----~l~~-  150 (356)
                      +++   +.+.+++.||++++++.+++++. +++.+..+++.  +|+  ++++|.|++++|.+|++.+++.     .+.. 
T Consensus       186 ~~~---~~~~~~~~gv~~~~~~~v~~i~~-~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~  261 (315)
T 3r9u_A          186 PST---VEKVKKNEKIELITSASVDEVYG-DKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNME  261 (315)
T ss_dssp             HHH---HHHHHHCTTEEEECSCEEEEEEE-ETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBC
T ss_pred             HHH---HHHHHhcCCeEEEeCcEEEEEEc-CCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeec
Confidence            544   34455789999999999999986 34455556655  775  7999999999999999998876     3555 


Q ss_pred             ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          151 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       151 ~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      ++|+|.||+++||+.|+|||+|||+..+.         ..+..|+.||+.||.+|..
T Consensus       262 ~~g~i~vd~~~~t~~~~v~a~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  309 (315)
T 3r9u_A          262 EGGQVSVDLKMQTSVAGLFAAGDLRKDAP---------KQVICAAGDGAVAALSAMA  309 (315)
T ss_dssp             TTSCBCCCTTCBCSSTTEEECGGGBTTCC---------CCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEeCCCcccCCCCEEEeecccCCch---------hhhhhHHhhHHHHHHHHHH
Confidence            56899999999999999999999986431         4688899999999999863

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.91  E-value=3.4e-24  Score=204.69  Aligned_cols=185  Identities=25%  Similarity=0.383  Sum_probs=148.4

Q ss_pred             CCCccCCCCC-CC-C--CCeEE-eCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416            3 LKLEEFGLSG-SD-A--ENVCY-LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus         3 ~~p~~~~ipG-~~-~--~~v~~-l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      ..|+.+++|| .+ .  .++++ +++..+          ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.
T Consensus       132 ~~~~~~~i~g~~~~~~~~~v~~~~~~~~~----------~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~  201 (360)
T 3ab1_A          132 FEPRKLPQLGNIDHLTGSSVYYAVKSVED----------FKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH  201 (360)
T ss_dssp             CCBCCCGGGCCCTTTBTTTEESSCSCGGG----------GTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC
T ss_pred             CCCCCCCCCCchhhCcCceEEEecCCHHH----------cCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC
Confidence            3677788888 43 2  23432 233221          25799999999999999999999999999999999887653


Q ss_pred             cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC--CC--cEEecCeEEEecCCCCCchhhhcc-ccccc
Q 018416           78 LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVVVGIGIRPNTSLFEGQ-LTLEK  152 (356)
Q Consensus        78 ~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~  152 (356)
                         ++..+.+.+.+++.||++++++++++++. +++.+..+.+.  +|  +++++|.||+++|++|++++++.. +..++
T Consensus       202 ---~~~~~~l~~~~~~~gv~i~~~~~v~~i~~-~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~  277 (360)
T 3ab1_A          202 ---GKTAHEVERARANGTIDVYLETEVASIEE-SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYE  277 (360)
T ss_dssp             ---SHHHHSSHHHHHHTSEEEESSEEEEEEEE-ETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEET
T ss_pred             ---HHHHHHHHHHhhcCceEEEcCcCHHHhcc-CCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhcccccc
Confidence               45677788888999999999999999987 34555556664  77  579999999999999999887654 55567


Q ss_pred             CcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416          153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       153 g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                      |+|.||+++||+.|+|||+|||+..+..       ..++..|..||+.||.+|.+.
T Consensus       278 g~i~vd~~~~t~~~~vya~GD~~~~~~~-------~~~~~~A~~~g~~aa~~i~~~  326 (360)
T 3ab1_A          278 NALVVDSHMKTSVDGLYAAGDIAYYPGK-------LKIIQTGLSEATMAVRHSLSY  326 (360)
T ss_dssp             TEEECCTTSBCSSTTEEECSTTEECTTC-------CCSHHHHHHHHHHHHHHHHHH
T ss_pred             CeeeecCCCcCCCCCEEEecCccCCCCc-------cceeehhHHHHHHHHHHHHhh
Confidence            8999999999999999999999986431       257888999999999999864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.90  E-value=1.6e-23  Score=197.45  Aligned_cols=189  Identities=17%  Similarity=0.195  Sum_probs=139.4

Q ss_pred             CCccCCCCCCCC-CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            4 KLEEFGLSGSDA-ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         4 ~p~~~~ipG~~~-~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +|..+++||.+. +++|..+.+..+......+....+++++|||+|++|+|+|..|++.|.+||++++.+.+..   .+.
T Consensus       123 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~  199 (333)
T 1vdc_A          123 VAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKI  199 (333)
T ss_dssp             EECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH
T ss_pred             CcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHH
Confidence            466677888754 2222211111112222222112579999999999999999999999999999999987643   333


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC-cEEEEEeC---CC--cEEecCeEEEecCCCCCchhhhccccc-ccCcE
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGI  155 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g-~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~I  155 (356)
                      +.   ++.+++.||++++++++++++.++++ .+..+.+.   +|  +++++|.|++++|++|++.+++..+.. ++|+|
T Consensus       200 ~~---~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i  276 (333)
T 1vdc_A          200 MQ---QRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYV  276 (333)
T ss_dssp             HH---HHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCB
T ss_pred             HH---HHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhhccccccCCCCE
Confidence            22   24456789999999999999873321 55455554   45  579999999999999999988755665 57899


Q ss_pred             EEecc-cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          156 KVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       156 ~vd~~-l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      .||++ ++|+.|+|||+|||+..+.         ..+..|..||+.||.+|..
T Consensus       277 ~vd~~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  320 (333)
T 1vdc_A          277 VTKPGTTQTSVPGVFAAGDVQDKKY---------RQAITAAGTGCMAALDAEH  320 (333)
T ss_dssp             CCCTTSCBCSSTTEEECGGGGCSSC---------CCHHHHHHHHHHHHHHHHH
T ss_pred             EechhhcccCCCCEEEeeeccCCCc---------hhHHHHHHhHHHHHHHHHH
Confidence            99997 6899999999999998642         3577899999999999864

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.90  E-value=1.7e-23  Score=196.45  Aligned_cols=181  Identities=19%  Similarity=0.278  Sum_probs=143.1

Q ss_pred             CCCccCCCCCCCC---CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccC
Q 018416            3 LKLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF   79 (356)
Q Consensus         3 ~~p~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~   79 (356)
                      .+|+.+++||.+.   ..+++  .+.+...+       ++++++|||+|++|+|+|..|++.|.+|+++++.+++.+  .
T Consensus       124 ~~p~~~~~~g~~~~~g~~~~~--~~~~~~~~-------~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~--~  192 (332)
T 3lzw_A          124 FKPRKLELENAEQYEGKNLHY--FVDDLQKF-------AGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA--H  192 (332)
T ss_dssp             CEECCCCCTTGGGGBTTTEES--SCSCGGGG-------BTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS--C
T ss_pred             CCCCCCCCCChhhccCceEEE--ecCCHHHc-------CCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc--c
Confidence            3788889999764   34443  33333222       579999999999999999999999999999999988754  2


Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-----CcEEecCeEEEecCCCCCchhhhcc-cccccC
Q 018416           80 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKG  153 (356)
Q Consensus        80 d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-----g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g  153 (356)
                      ++.     .+.|++.||++++++.+++++.+ ++ +..+.+.+     ++++++|.|++++|++|++++++.. +..++|
T Consensus       193 ~~~-----~~~l~~~gv~~~~~~~v~~i~~~-~~-~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g  265 (332)
T 3lzw_A          193 EHS-----VENLHASKVNVLTPFVPAELIGE-DK-IEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKN  265 (332)
T ss_dssp             HHH-----HHHHHHSSCEEETTEEEEEEECS-SS-CCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETT
T ss_pred             HHH-----HHHHhcCCeEEEeCceeeEEecC-Cc-eEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCC
Confidence            332     34578899999999999999863 22 34555554     3579999999999999999987764 556789


Q ss_pred             cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416          154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                      +|.||++++|+.|+|||+|||+..+..       ..++..|..||+.||.+|...
T Consensus       266 ~i~vd~~~~t~~~~vya~GD~~~~~~~-------~~~~~~A~~~g~~aa~~i~~~  313 (332)
T 3lzw_A          266 SIVVKSTMETNIEGFFAAGDICTYEGK-------VNLIASGFGEAPTAVNNAKAY  313 (332)
T ss_dssp             EEECCTTSBCSSTTEEECGGGEECTTC-------CCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEeCCCCceecCCEEEccceecCCCC-------cceEeeehhhHHHHHHHHHHh
Confidence            999999999999999999999975421       257889999999999998753

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.89  E-value=2.4e-23  Score=195.94  Aligned_cols=181  Identities=20%  Similarity=0.233  Sum_probs=140.5

Q ss_pred             CCccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+   ...+++..      .....+....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++    
T Consensus       141 ~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~----  210 (338)
T 3itj_A          141 SAKRMHLPGEETYWQKGISACA------VCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA----  210 (338)
T ss_dssp             EECCCCCTTHHHHBTTTEESCH------HHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS----
T ss_pred             CcCCCCCCCchhccCccEEEch------hcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC----
Confidence            46677888854   23444322      122221122689999999999999999999999999999999988765    


Q ss_pred             HHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCC-----CcEEecCeEEEecCCCCCchhhhccccc-ccC
Q 018416           81 PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKG  153 (356)
Q Consensus        81 ~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~-----g~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g  153 (356)
                         ...+.+.+.+. ||++++++.+++++. +++.+..+++.+     ++++++|.||+++|++|++.+++..+.. ++|
T Consensus       211 ---~~~~~~~l~~~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G  286 (338)
T 3itj_A          211 ---STIMQKRAEKNEKIEILYNTVALEAKG-DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAG  286 (338)
T ss_dssp             ---CHHHHHHHHHCTTEEEECSEEEEEEEE-SSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBTTBCBCTTS
T ss_pred             ---CHHHHHHHHhcCCeEEeecceeEEEEc-ccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhCceEecCCC
Confidence               23345556554 999999999999987 445555676655     4679999999999999999998776666 578


Q ss_pred             cEEE-ecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          154 GIKV-TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       154 ~I~v-d~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      +|.+ |++++|+.|+|||+|||+..+.         ..+..|+.||+.||.+|..
T Consensus       287 ~i~v~~~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  332 (338)
T 3itj_A          287 YIKTVPGSSLTSVPGFFAAGDVQDSKY---------RQAITSAGSGCMAALDAEK  332 (338)
T ss_dssp             CBCCCTTSSBCSSTTEEECGGGGCSSC---------CCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEcCcccccCCCCEEEeeccCCCCc---------cceeeehhhhHHHHHHHHH
Confidence            8885 8899999999999999997432         4578899999999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.89  E-value=7.2e-23  Score=191.31  Aligned_cols=181  Identities=25%  Similarity=0.339  Sum_probs=141.7

Q ss_pred             CCccCCCCCCCC---CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+.   +++++. ...+.     .  ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++   +
T Consensus       124 ~~~~~~i~g~~~~~~~~~~~~-~~~~~-----~--~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~  192 (323)
T 3f8d_A          124 KRRKLGVPGEQEFAGRGISYC-SVADA-----P--LFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---Q  192 (323)
T ss_dssp             EECCCCCTTTTTTBTTTEESC-HHHHG-----G--GGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---C
T ss_pred             CCccCCCCchhhhcCCceEEe-ccCCH-----h--HcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---C
Confidence            367788898765   555432 11121     1  12579999999999999999999999999999999998766   3


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC---Cc--EEecCeEEEecCCCCCchhhhcc-ccc-ccC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKG  153 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g~--~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g  153 (356)
                      +++   +++.+++.||++++++++++++.+  +.+..+++.+   |+  ++++|.|++++|++|++++++.. +.. ++|
T Consensus       193 ~~~---~~~~~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g  267 (323)
T 3f8d_A          193 PIY---VETVKKKPNVEFVLNSVVKEIKGD--KVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNG  267 (323)
T ss_dssp             HHH---HHHHHTCTTEEEECSEEEEEEEES--SSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTS
T ss_pred             HHH---HHHHHhCCCcEEEeCCEEEEEecc--CceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCC
Confidence            332   233334559999999999999863  4555666655   76  79999999999999999887654 665 679


Q ss_pred             cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      +|.||++++|+.|+|||+|||+..+       .....+..|..||+.||.+|..
T Consensus       268 ~i~vd~~~~t~~~~vya~GD~~~~~-------~~~~~~~~A~~~g~~aa~~i~~  314 (323)
T 3f8d_A          268 YIKVDEWMRTSVPGVFAAGDCTSAW-------LGFRQVITAVAQGAVAATSAYR  314 (323)
T ss_dssp             SBCCCTTCBCSSTTEEECSTTBSTT-------TTCCCHHHHHHHHHHHHHHHHH
T ss_pred             cEecCCCceecCCCEEEcceecCCC-------CcccceeehhhHHHHHHHHHHH
Confidence            9999999999999999999999863       0125688999999999999864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.88  E-value=1.1e-22  Score=201.06  Aligned_cols=186  Identities=22%  Similarity=0.339  Sum_probs=140.2

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHH----------HhcCCCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCC
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNV----------MKSCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEA   72 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~----------l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~   72 (356)
                      .|+.+++||.+.++|++..++-........          .....+++|+|||||++|+|+|..+.+.|.+ ||+++|++
T Consensus       219 ~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          219 KARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD  298 (456)
T ss_dssp             EECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence            477889999998999864332221111100          0113579999999999999999999999984 99999998


Q ss_pred             cc-CCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe---------C---------CC--cEEecCeE
Q 018416           73 HC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---------R---------DG--NRLPTDMV  131 (356)
Q Consensus        73 ~~-l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~---------~---------~g--~~i~~D~v  131 (356)
                      .. ++. .+.+     .+.+++.||++++++.++++..  ++++..+++         .         +|  +++++|.|
T Consensus       299 ~~~~p~-~~~e-----~~~~~~~Gv~~~~~~~~~~i~~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~V  370 (456)
T 2vdc_G          299 RKNMPG-SQRE-----VAHAEEEGVEFIWQAAPEGFTG--DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLV  370 (456)
T ss_dssp             STTCSS-CHHH-----HHHHHHTTCEEECCSSSCCEEE--EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEE
T ss_pred             ccCCCC-CHHH-----HHHHHHCCCEEEeCCCceEEeC--CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEE
Confidence            76 664 3433     2457788999999999999875  343321221         1         23  46999999


Q ss_pred             EEecCCCCCch--hhhcc-ccc-ccCcEEEecc-cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          132 VVGIGIRPNTS--LFEGQ-LTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       132 i~a~G~~p~~~--l~~~~-l~~-~~g~I~vd~~-l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      |+++|++|++.  +++.. +.. .+|+|.||++ ++|+.|+|||+|||+..+          .++..|+.||+.||.+|.
T Consensus       371 i~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~----------~~v~~A~~~G~~aA~~i~  440 (456)
T 2vdc_G          371 IKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGA----------SLVVWAIRDGRDAAEGIH  440 (456)
T ss_dssp             EECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSC----------CSHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCc----------hHHHHHHHHHHHHHHHHH
Confidence            99999999986  55543 655 6789999998 999999999999998764          357889999999999987


Q ss_pred             C
Q 018416          207 E  207 (356)
Q Consensus       207 g  207 (356)
                      .
T Consensus       441 ~  441 (456)
T 2vdc_G          441 A  441 (456)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.88  E-value=5.4e-23  Score=190.08  Aligned_cols=171  Identities=19%  Similarity=0.138  Sum_probs=136.1

Q ss_pred             CCccCCCCCCCC---CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+.   .++++.. ..+.      . ...+++++|||+|++|+|+|..|++.| +|+++++.+.   . ++
T Consensus       111 ~~~~~~~~g~~~~~~~~~~~~~-~~~~------~-~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~---~-~~  177 (297)
T 3fbs_A          111 TDELPEIAGLRERWGSAVFHCP-YCHG------Y-ELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV---E-PD  177 (297)
T ss_dssp             EEECCCCBTTGGGBTTTEESCH-HHHT------G-GGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC---C-CC
T ss_pred             CCCCCCCCCchhhcCCeeEEcc-cCcc------h-hhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC---C-CC
Confidence            466778888753   4555332 1111      1 125899999999999999999999999 9999998876   2 44


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccc---cC-cE
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLE---KG-GI  155 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~---~g-~I  155 (356)
                      +.    +.+.|++.||+++. +++++++.  ++   .+++.+|+++++|.|++++|++|++++++.. +..+   +| +|
T Consensus       178 ~~----~~~~l~~~gv~i~~-~~v~~i~~--~~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i  247 (297)
T 3fbs_A          178 AD----QHALLAARGVRVET-TRIREIAG--HA---DVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTI  247 (297)
T ss_dssp             HH----HHHHHHHTTCEEEC-SCEEEEET--TE---EEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEE
T ss_pred             HH----HHHHHHHCCcEEEc-ceeeeeec--CC---eEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceE
Confidence            43    46778899999995 89999974  22   5788999999999999999999999887654 5543   35 79


Q ss_pred             EEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          156 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       156 ~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      .||++++|+.|+|||+|||+..+          ..+..|..||+.||.+|..
T Consensus       248 ~vd~~~~t~~~~vya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~  289 (297)
T 3fbs_A          248 VTDPMKQTTARGIFACGDVARPA----------GSVALAVGDGAMAGAAAHR  289 (297)
T ss_dssp             CCCTTCBCSSTTEEECSGGGCTT----------CCHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCccCCCCEEEEeecCCch----------HHHHHHHHhHHHHHHHHHH
Confidence            99999999999999999999863          4678899999999999864

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.88  E-value=2.1e-22  Score=195.91  Aligned_cols=187  Identities=20%  Similarity=0.248  Sum_probs=154.9

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCch-------------------------HHHHHH---
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGY-------------------------IGMECA---   55 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~-------------------------iGlE~A---   55 (356)
                      +|+.+++||.+. +++++.+.+++.++++.+.... ++++|||+|+                         +|+|+|   
T Consensus       112 ~~~~~~ipG~~~-~~~~~~~~~~~~~~~~~l~~~~-~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~  189 (409)
T 3h8l_A          112 HLATELVKGWDK-YGYSVCEPEFATKLREKLESFQ-GGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLML  189 (409)
T ss_dssp             EECGGGSBTHHH-HCEESSSTTHHHHHHHHHHHCC-SEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHH
T ss_pred             CcCccCCCChhh-cCcCcCCHHHHHHHHHHHHHhc-CCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHH
Confidence            567778898763 6788899999999999887643 5677999992                         577877   


Q ss_pred             -HHHHHCCC----cEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCe
Q 018416           56 -ASLVINKI----NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM  130 (356)
Q Consensus        56 -~~L~~~G~----~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~  130 (356)
                       ..|.+.|.    +|+++++.+ +++. +++++.+.+.+.|++.||+++++++|++++.  +    .+.+++|+++++|.
T Consensus       190 ~~~l~~~g~~~~~~v~~~~~~~-~l~~-~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~----~v~~~~g~~~~~D~  261 (409)
T 3h8l_A          190 HGYFKKKGMLDKVHVTVFSPGE-YLSD-LSPNSRKAVASIYNQLGIKLVHNFKIKEIRE--H----EIVDEKGNTIPADI  261 (409)
T ss_dssp             HHHHHTTTCTTTEEEEEECSSS-SSTT-BCHHHHHHHHHHHHHHTCEEECSCCEEEECS--S----EEEETTSCEEECSE
T ss_pred             HHHHHHcCCCCCeEEEEEeCCc-cccc-cCHHHHHHHHHHHHHCCCEEEcCCceEEECC--C----eEEECCCCEEeeeE
Confidence             45567784    899999998 7776 8999999999999999999999999999964  2    36788999999999


Q ss_pred             EEEecCCCCCchhhhc--ccccccCcEEEeccccc-CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          131 VVVGIGIRPNTSLFEG--QLTLEKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       131 vi~a~G~~p~~~l~~~--~l~~~~g~I~vd~~l~t-s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      +++++|.+|+..+.+.  .+..++|+|.||+++|| +.|+|||+|||+..+.+        ..+..|..||+.||.||.+
T Consensus       262 vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~--------~~~~~A~~q~~~aa~~i~~  333 (409)
T 3h8l_A          262 TILLPPYTGNPALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVP--------KLGYLAVMTGRIAAQHLAN  333 (409)
T ss_dssp             EEEECCEECCHHHHTSCGGGSCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCS--------CCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCccHHHHhccccCcCCCCCEEeCcccccCCCCCEEEeehhccCCCC--------cHHHHHHHHHHHHHHHHHH
Confidence            9999999999655554  24346788999999999 99999999999986432        4677899999999999976


Q ss_pred             C
Q 018416          208 P  208 (356)
Q Consensus       208 ~  208 (356)
                      .
T Consensus       334 ~  334 (409)
T 3h8l_A          334 R  334 (409)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.88  E-value=2e-22  Score=202.40  Aligned_cols=179  Identities=26%  Similarity=0.390  Sum_probs=142.0

Q ss_pred             CCccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+   ..+++++...+.      .+  ..+++++|||+|++|+|+|..|++.|.+||++++.++++.   +
T Consensus       325 ~~~~~~ipG~~~~~~~~v~~~~~~~~------~~--~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~  393 (521)
T 1hyu_A          325 KWRNMNVPGEDQYRTKGVTYCPHCDG------PL--FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D  393 (521)
T ss_dssp             EECCCCCTTTTTTTTTTEECCTTCCG------GG--GBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C
T ss_pred             CcCCCCCCChhhhcCceEEEeecCch------hh--cCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C
Confidence            46667888864   245665433211      11  2589999999999999999999999999999999988654   3


Q ss_pred             HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCC---Cc--EEecCeEEEecCCCCCchhhhccccc-ccC
Q 018416           81 PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLFEGQLTL-EKG  153 (356)
Q Consensus        81 ~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g~--~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g  153 (356)
                          ..+.+.|++ .||++++++.++++.. +++++..+.+.+   |+  ++++|.|++++|.+||+++++..+.. .+|
T Consensus       394 ----~~l~~~l~~~~gV~v~~~~~v~~i~~-~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G  468 (521)
T 1hyu_A          394 ----QVLQDKVRSLKNVDIILNAQTTEVKG-DGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMG  468 (521)
T ss_dssp             ----HHHHHHHTTCTTEEEECSEEEEEEEE-CSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTTSCBCTTS
T ss_pred             ----HHHHHHHhcCCCcEEEeCCEEEEEEc-CCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhhhccCCCC
Confidence                345666777 6999999999999987 455665666643   54  68999999999999999988766655 578


Q ss_pred             cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      +|.||++++|+.|+|||+|||+..+.         ..+..|+.||+.||.+|..
T Consensus       469 ~I~Vd~~~~ts~p~VfA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  513 (521)
T 1hyu_A          469 EIIIDAKCETSVKGVFAAGDCTTVPY---------KQIIIATGEGAKASLSAFD  513 (521)
T ss_dssp             CBCCCTTCBCSSTTEEECSTTBCCSS---------CCHHHHHHHHHHHHHHHHH
T ss_pred             cEEeCCCCCCCCCCEEEeecccCCCc---------ceeeehHHhHHHHHHHHHH
Confidence            99999999999999999999998653         3577899999999998863

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.88  E-value=1.5e-21  Score=191.86  Aligned_cols=203  Identities=17%  Similarity=0.098  Sum_probs=152.6

Q ss_pred             CCccCCCCCCCC--CCeEEeCCHHHHHHHHHHHhcC-CCCcEEEECCch----HH--HHHH----HHHHHCCCc-----E
Q 018416            4 KLEEFGLSGSDA--ENVCYLRDLADANRLVNVMKSC-SGGNAVVIGGGY----IG--MECA----ASLVINKIN-----V   65 (356)
Q Consensus         4 ~p~~~~ipG~~~--~~v~~l~~~~da~~i~~~l~~~-~~~~vvVvGgG~----iG--lE~A----~~L~~~G~~-----V   65 (356)
                      +|+.+++||.+.  .+++.+.+++++.++++.++.. .+++++|||+|.    +|  +|+|    ..++++|.+     |
T Consensus       111 ~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~V  190 (437)
T 3sx6_A          111 KLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSF  190 (437)
T ss_dssp             EECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCE
T ss_pred             CcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEE
Confidence            577788999875  4788899999999888765432 245678888854    44  7777    666788875     9


Q ss_pred             EEEeeCCccCCccC--CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-----CcEEecCeEEEecCCC
Q 018416           66 TMVFPEAHCMARLF--TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVVGIGIR  138 (356)
Q Consensus        66 tlv~~~~~~l~~~~--d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-----g~~i~~D~vi~a~G~~  138 (356)
                      |++++.+.+.+..+  .++..+.+++.|+++||++++++++++++.  ++........+     ++++++|.+++++|.+
T Consensus       191 tlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~  268 (437)
T 3sx6_A          191 TFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFK  268 (437)
T ss_dssp             EEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCEE
T ss_pred             EEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCCc
Confidence            99999998743211  145888999999999999999999999974  32111111233     5679999999999999


Q ss_pred             CCchhhhc-ccccccCcEEEeccccc-CCCCEEEEccccccCccccCccc---ccccHHHHHHHHHHHHHHHcCCC
Q 018416          139 PNTSLFEG-QLTLEKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETR---RLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       139 p~~~l~~~-~l~~~~g~I~vd~~l~t-s~~~VyAiGD~~~~~~~~~g~~~---~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      |+..+.+. ++..++|+|.||++||| ++|+|||+|||+..+... +.+.   ...++..|..||+.+|+||....
T Consensus       269 ~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~-~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l  343 (437)
T 3sx6_A          269 GVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVE-TTPVPTGAPKTGYMIESMVSAAVHNIKADL  343 (437)
T ss_dssp             CCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSC-CCSSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CchhhhccccccCCCCcEEeChhccCCCCCCEEEEEEEeccCCcC-CCcCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            98777653 35447789999999999 999999999999876421 1111   23578899999999999998543

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.88  E-value=9.6e-23  Score=192.84  Aligned_cols=179  Identities=23%  Similarity=0.305  Sum_probs=135.6

Q ss_pred             CCccCCCCCCCC---CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416            4 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   80 (356)
Q Consensus         4 ~p~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d   80 (356)
                      +|+.+++||.+.   +.++++.+.++      .+.  .+++++|||+|++|+|+|..|++.|.+||++++.+.+..   .
T Consensus       125 ~~~~~~i~g~~~~~~~~~~~~~~~~~------~~~--~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~  193 (335)
T 2a87_A          125 AARYLQVPGEQELLGRGVSSCATCDG------FFF--RDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---S  193 (335)
T ss_dssp             EECCCCCTHHHHTBTTTEESCHHHHG------GGG--TTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---C
T ss_pred             CccCCCCCchHhccCCceEEeeccch------hhc--CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---c
Confidence            456677887542   34543332222      222  579999999999999999999999999999999987643   2


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---CC--cEEecCeEEEecCCCCCchhhhccccc-ccCc
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGG  154 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~  154 (356)
                      +.+.   .+.+++.||++++++++++++.+  +.+..+.+.   +|  +++++|.|++++|++|++++++..+.. ++|+
T Consensus       194 ~~~~---~~~~~~~gV~v~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~  268 (335)
T 2a87_A          194 KIML---DRARNNDKIRFLTNHTVVAVDGD--TTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGY  268 (335)
T ss_dssp             TTHH---HHHHHCTTEEEECSEEEEEEECS--SSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBTTBCBCTTSC
T ss_pred             HHHH---HHHhccCCcEEEeCceeEEEecC--CcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhhcccccCCCcc
Confidence            2221   24456799999999999999863  232334443   45  579999999999999999988755665 5789


Q ss_pred             EEEecc-cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          155 IKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       155 I~vd~~-l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      |.||++ ++|+.|+|||+|||+..+.         ..+..|..||+.||.+|..
T Consensus       269 i~vd~~~~~t~~~~iya~GD~~~~~~---------~~~~~A~~~g~~aA~~i~~  313 (335)
T 2a87_A          269 VLVQGRTTSTSLPGVFAAGDLVDRTY---------RQAVTAAGSGCAAAIDAER  313 (335)
T ss_dssp             BCCSTTSSBCSSTTEEECGGGTCCSC---------CCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCccCCCCEEEeeecCCccH---------HHHHHHHHhHHHHHHHHHH
Confidence            999986 6899999999999998642         3577899999999998863

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.87  E-value=1.2e-22  Score=201.02  Aligned_cols=192  Identities=14%  Similarity=0.173  Sum_probs=140.2

Q ss_pred             CccCCCCCCCCCCeEEeCCHHHHHHH-HH--HHh-cCCCCcEEEECCchHHHHHHHHHH--------------------H
Q 018416            5 LEEFGLSGSDAENVCYLRDLADANRL-VN--VMK-SCSGGNAVVIGGGYIGMECAASLV--------------------I   60 (356)
Q Consensus         5 p~~~~ipG~~~~~v~~l~~~~da~~i-~~--~l~-~~~~~~vvVvGgG~iGlE~A~~L~--------------------~   60 (356)
                      |+.+++||.+.+++++.+++.....- .+  .+. ...+++++|||+|++|+|+|..|+                    +
T Consensus       107 ~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~  186 (460)
T 1cjc_A          107 HQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ  186 (460)
T ss_dssp             ECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHT
T ss_pred             CCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhh
Confidence            46789999988999976654211100 00  001 124789999999999999999999                    6


Q ss_pred             CCC-cEEEEeeCCccC--------------Cc--------cCC----------HH---HHHHHHHHHHh-----------
Q 018416           61 NKI-NVTMVFPEAHCM--------------AR--------LFT----------PK---IASYYEEYYKS-----------   93 (356)
Q Consensus        61 ~G~-~Vtlv~~~~~~l--------------~~--------~~d----------~~---~~~~~~~~l~~-----------   93 (356)
                      .|. +|++++|++.+.              +.        .++          ..   +.+.+.+.+++           
T Consensus       187 ~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  266 (460)
T 1cjc_A          187 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRA  266 (460)
T ss_dssp             CCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             CCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCC
Confidence            787 799999998752              21        011          10   33444455555           


Q ss_pred             ---CCCEEEeCCeeeEEEEcCCC-cEEEEEeC---------------CC--cEEecCeEEEecCCCCCchhhhccc-cc-
Q 018416           94 ---KGVKFVKGTVLSSFDVDSNG-KVVAVNLR---------------DG--NRLPTDMVVVGIGIRPNTSLFEGQL-TL-  150 (356)
Q Consensus        94 ---~GV~v~~~~~v~~i~~~~~g-~v~~v~~~---------------~g--~~i~~D~vi~a~G~~p~~~l~~~~l-~~-  150 (356)
                         +||++++++.++++..++++ .+..+++.               +|  +++++|+||+++|++|++ +  .++ .. 
T Consensus       267 ~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l--~gl~~~d  343 (460)
T 1cjc_A          267 SASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I--DPSVPFD  343 (460)
T ss_dssp             TCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C--CTTSCCB
T ss_pred             CCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C--CCCcccc
Confidence               89999999999999874335 55555543               34  579999999999999998 3  345 55 


Q ss_pred             ccCcEEEecccccC-CCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416          151 EKGGIKVTGRLQSS-NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       151 ~~g~I~vd~~l~ts-~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                      ++++|.||+++||+ .|+|||+|||+..+.         ..+..|+.+|+.+|.+|++.
T Consensus       344 ~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~---------~~i~~a~~~g~~aa~~i~~~  393 (460)
T 1cjc_A          344 PKLGVVPNMEGRVVDVPGLYCSGWVKRGPT---------GVITTTMTDSFLTGQILLQD  393 (460)
T ss_dssp             TTTTBCCEETTEETTCTTEEECTHHHHCTT---------CCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCeeECCCCcCcCCCCEEEEEeCCcCCC---------ccHHHHHHHHHHHHHHHHHH
Confidence            56899999999998 799999999997543         24667999999999998754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.87  E-value=2e-22  Score=188.28  Aligned_cols=175  Identities=10%  Similarity=0.070  Sum_probs=131.8

Q ss_pred             CCccCCCCCCCC---CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCch-HHHHHHHHHHHCCCcEEEEeeCCccCCccC
Q 018416            4 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPEAHCMARLF   79 (356)
Q Consensus         4 ~p~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~-iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~   79 (356)
                      +|+.+++||.+.   .++++....      ....  .++++++|||||. +++|+|..+.+.+.+||++.+.+.+     
T Consensus       116 ~p~~p~i~G~~~~~~~~v~~~~~~------~~~~--~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~-----  182 (304)
T 4fk1_A          116 QEEFPSIPNVREYYGKSLFSCPYC------DGWE--LKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNEL-----  182 (304)
T ss_dssp             EEECCSCTTHHHHBTTTEESCHHH------HSGG--GTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCC-----
T ss_pred             ccccccccCccccccceeeecccc------chhH--hcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccc-----
Confidence            578889999642   345432211      1111  1567788888775 5789999999999999999887653     


Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhc-cccc-ccCcEEE
Q 018416           80 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKV  157 (356)
Q Consensus        80 d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~-~l~~-~~g~I~v  157 (356)
                      .+    .+.+.|+++|++++++. ++.+.. +++.+..+++++|+++++|.++++.|.+|++.+++. ++++ ++|+|.|
T Consensus       183 ~~----~~~~~l~~~g~~~~~~~-v~~~~~-~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~v  256 (304)
T 4fk1_A          183 SQ----TIMDELSNKNIPVITES-IRTLQG-EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVI  256 (304)
T ss_dssp             CH----HHHHHHHTTTCCEECSC-EEEEES-GGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCS
T ss_pred             hh----hhhhhhhccceeEeeee-EEEeec-CCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEE
Confidence            22    34567889999999764 777765 456677899999999999999888877666665544 4776 6788999


Q ss_pred             ecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          158 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       158 d~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      |++||||+|+|||+|||+..+.         .++..|..||+.||.+|.
T Consensus       257 d~~~~Ts~p~IyA~GDv~~~~~---------~~~~~A~~~G~~AA~~i~  296 (304)
T 4fk1_A          257 DDFGRTSEKNIYLAGETTTQGP---------SSLIIAASQGNKAAIAIN  296 (304)
T ss_dssp             STTCBCSSTTEEECSHHHHTSC---------CCHHHHHHHHHHHHHHHH
T ss_pred             CcCCccCCCCEEEEeccCCCcc---------hHHHHHHHHHHHHHHHHH
Confidence            9999999999999999997542         356789999999998774

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.86  E-value=2.2e-21  Score=208.87  Aligned_cols=180  Identities=22%  Similarity=0.314  Sum_probs=139.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC-ccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA-HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV  115 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~-~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v  115 (356)
                      .+++|+|||||++|+|+|..+.++|. +||++++++ .+++. +++++     +.+++.||++++++.++++.. +++++
T Consensus       331 ~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~-~~~e~-----~~~~~~Gv~~~~~~~~~~i~~-~~g~v  403 (1025)
T 1gte_A          331 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRA-VPEEV-----ELAKEEKCEFLPFLSPRKVIV-KGGRI  403 (1025)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCS-CHHHH-----HHHHHTTCEEECSEEEEEEEE-ETTEE
T ss_pred             cCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCC-CHHHH-----HHHHHcCCEEEeCCCceEEEc-cCCeE
Confidence            36799999999999999999999997 899999998 45554 56654     456788999999999999976 45666


Q ss_pred             EEEEeC------CC---------cEEecCeEEEecCCCCC-chhhhc--cccc-ccCcEEEec-ccccCCCCEEEEcccc
Q 018416          116 VAVNLR------DG---------NRLPTDMVVVGIGIRPN-TSLFEG--QLTL-EKGGIKVTG-RLQSSNSSVYAVGDVA  175 (356)
Q Consensus       116 ~~v~~~------~g---------~~i~~D~vi~a~G~~p~-~~l~~~--~l~~-~~g~I~vd~-~l~ts~~~VyAiGD~~  175 (356)
                      ..+++.      +|         +++++|.||+++|++|+ +.++..  ++.. .+|+|.||+ ++||+.|+|||+|||+
T Consensus       404 ~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~  483 (1025)
T 1gte_A          404 VAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV  483 (1025)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGG
T ss_pred             EEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCC
Confidence            555542      22         36899999999999864 566654  4666 578899997 8999999999999999


Q ss_pred             ccCccccCcccccccHHHHHHHHHHHHHHHcCC------CCCCCCCCCCeEEE--EecCceEEEeec
Q 018416          176 AFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP------DKTDKFDYLPFFYS--RVFTLSWQFYGD  234 (356)
Q Consensus       176 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~------~~~~~~~~~p~~~~--~~~~~~~~~~G~  234 (356)
                      ..+          .++..|+.||+.||.+|.+.      .....+..+|++|.  ...+++..+.|.
T Consensus       484 ~~~----------~~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev~~v~ls~~~~G~  540 (1025)
T 1gte_A          484 GMA----------NTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGL  540 (1025)
T ss_dssp             CSC----------CCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGGGGCCCCEEETTE
T ss_pred             CCc----------hHHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCccccccccccccceeeeccc
Confidence            754          35678999999999999741      11124567888876  455555565554

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.86  E-value=7.5e-22  Score=188.49  Aligned_cols=164  Identities=13%  Similarity=0.198  Sum_probs=129.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------cCCHHHHHHHHHHHHhCC-CEEEeCCeeeEEEEc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LFTPKIASYYEEYYKSKG-VKFVKGTVLSSFDVD  110 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------~~d~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~  110 (356)
                      ++++++|||+|++|+|+|..|++.|.+||++++.+.++++      .+++...+.+.+.|++.| |++++++++++++.+
T Consensus       165 ~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~  244 (369)
T 3d1c_A          165 NKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFN  244 (369)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEec
Confidence            5789999999999999999999999999999999887742      156778899999999997 999999999999753


Q ss_pred             CCCcEEEEEeCCCcEEe-cCeEEEecCCCCCchhhhc-ccccccCcEEEecc-cccCCCCEEEEccccccCccccCcccc
Q 018416          111 SNGKVVAVNLRDGNRLP-TDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRR  187 (356)
Q Consensus       111 ~~g~v~~v~~~~g~~i~-~D~vi~a~G~~p~~~l~~~-~l~~~~g~I~vd~~-l~ts~~~VyAiGD~~~~~~~~~g~~~~  187 (356)
                      + +. ..+++.+|+++. +|.+|+++|++|+++++.. .+...+|+|.||++ ++|+.|+|||+|||+..+....     
T Consensus       245 ~-~~-~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~~-----  317 (369)
T 3d1c_A          245 N-GQ-YHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKL-----  317 (369)
T ss_dssp             T-TE-EEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCCC-----
T ss_pred             C-Cc-eEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCCCeEEeccccccCCeeE-----
Confidence            3 22 457788898775 6999999999999965544 34445677999985 7789999999999998765422     


Q ss_pred             cccHHHHHHHHHHHHHHHcCCC
Q 018416          188 LEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       188 ~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                       +.+..+.+||+.+|++|.+..
T Consensus       318 -~~~~~~~~~a~~~a~~l~~~~  338 (369)
T 3d1c_A          318 -CYIYKFRARFAVLAHLLTQRE  338 (369)
T ss_dssp             -CSHHHHGGGHHHHHHHHHHHT
T ss_pred             -EEEehhhHHHHHHHHHHhccc
Confidence             345568889999999998754

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.86  E-value=5.6e-22  Score=192.22  Aligned_cols=195  Identities=18%  Similarity=0.129  Sum_probs=152.3

Q ss_pred             CCccCCCCCCC----CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCch-----------HHHHHHHHHHHCC--CcEE
Q 018416            4 KLEEFGLSGSD----AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGY-----------IGMECAASLVINK--INVT   66 (356)
Q Consensus         4 ~p~~~~ipG~~----~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~-----------iGlE~A~~L~~~G--~~Vt   66 (356)
                      +|+.+++||.+    ...++++++.+++..+++.+......+.+|+++|.           +++|+|..|++.+  .+|+
T Consensus       107 ~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~  186 (401)
T 3vrd_B          107 DLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVI  186 (401)
T ss_dssp             EECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             ccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEE
Confidence            56778889865    24567889999999999998876555555554332           4567777777665  6899


Q ss_pred             EEeeCCccCC-ccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416           67 MVFPEAHCMA-RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus        67 lv~~~~~~l~-~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                      ++++.+.+.. ..+++.+.+.+.+.+++.||+++++++++.++.+.++  ..+++++|+++++|++++++|.+|+..+.+
T Consensus       187 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~--~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~  264 (401)
T 3vrd_B          187 ILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEA--MTVETSFGETFKAAVINLIPPQRAGKIAQS  264 (401)
T ss_dssp             EECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTT--TEEEETTSCEEECSEEEECCCEEECHHHHH
T ss_pred             EEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccc--eEEEcCCCcEEEeeEEEEecCcCCchhHhh
Confidence            9999887643 2267788888888889999999999999999864444  357889999999999999999999865545


Q ss_pred             cccccccCcEEEecc-cc-cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          146 GQLTLEKGGIKVTGR-LQ-SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       146 ~~l~~~~g~I~vd~~-l~-ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      ..+..++|+|.||++ || |++|||||+|||+....       ..++++.|++||+.+|+||+.
T Consensus       265 ~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~-------~pk~a~~A~~qa~v~A~ni~~  321 (401)
T 3vrd_B          265 ASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAP-------MPKSAYSANSQAKVAAAAVVA  321 (401)
T ss_dssp             TTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTT-------SCBSHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCEEECCCcceecCCCCEEEecccccCCC-------CCchHHHHHHHHHHHHHHHHH
Confidence            556668899999987 65 69999999999986421       125688999999999999974

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.85  E-value=5.1e-22  Score=206.97  Aligned_cols=198  Identities=15%  Similarity=0.144  Sum_probs=148.7

Q ss_pred             CccCCCCCCC--CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEEC--CchHHHHHHHHHHHCCCcEEEEeeCCccCCc-cC
Q 018416            5 LEEFGLSGSD--AENVCYLRDLADANRLVNVMKSCSGGNAVVIG--GGYIGMECAASLVINKINVTMVFPEAHCMAR-LF   79 (356)
Q Consensus         5 p~~~~ipG~~--~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvG--gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-~~   79 (356)
                      |+.+++||.+  .+++++.   .++..  .  ....+++|+|||  ||++|+|+|..|+++|.+||++++.+ +++. .+
T Consensus       499 p~~~~ipG~~~~~~~v~~~---~~~l~--~--~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~  570 (729)
T 1o94_A          499 LTHDPIPGADASLPDQLTP---EQVMD--G--KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHF  570 (729)
T ss_dssp             TTSSCCTTCCTTSTTEECH---HHHHH--C--CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHH
T ss_pred             ccCCCCCCccccCCCEEEH---HHHhc--C--CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccccc
Confidence            6778999987  6788853   33321  1  122578999999  99999999999999999999999998 6552 13


Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cE------------------EecCeEEEecCCCCC
Q 018416           80 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NR------------------LPTDMVVVGIGIRPN  140 (356)
Q Consensus        80 d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~------------------i~~D~vi~a~G~~p~  140 (356)
                      +.. ...+.+.|+++||++++++++++++.  ++......+.++ ++                  +++|.||+++|.+|+
T Consensus       571 ~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~  647 (729)
T 1o94_A          571 TLE-YPNMMRRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSE  647 (729)
T ss_dssp             TTC-HHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEEC
T ss_pred             ccc-HHHHHHHHHhCCCEEEcCcEEEEEEC--CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCC
Confidence            333 46678889999999999999999974  331111111233 33                  999999999999999


Q ss_pred             chhhhcccccccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE
Q 018416          141 TSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFF  220 (356)
Q Consensus       141 ~~l~~~~l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~  220 (356)
                      +.+++.. .     ..+|++++|+.|+|||+|||+..           ..+..|+.||+.||.+|.+..   .+..+|+ 
T Consensus       648 ~~l~~~l-~-----~~vd~~~~t~~~~VyAiGD~~~~-----------~~~~~A~~~G~~aA~~i~~~l---~~~~~p~-  706 (729)
T 1o94_A          648 CTLWNEL-K-----ARESEWAENDIKGIYLIGDAEAP-----------RLIADATFTGHRVAREIEEAN---PQIAIPY-  706 (729)
T ss_dssp             CHHHHHH-H-----HTGGGTGGGTCCEEEECGGGTSC-----------CCHHHHHHHHHHHHHTTTSSC---TTSCCCC-
T ss_pred             hHHHHHH-h-----hhcccccccCCCCeEEEeCccch-----------hhHHHHHHHHHHHHHHhhhhc---ccCCCCe-
Confidence            9987632 1     12688999999999999999863           246789999999999998753   3456777 


Q ss_pred             EEEecCceEEEeec
Q 018416          221 YSRVFTLSWQFYGD  234 (356)
Q Consensus       221 ~~~~~~~~~~~~G~  234 (356)
                      +...+++.++++|.
T Consensus       707 ~~~~~~~~~~~~~~  720 (729)
T 1o94_A          707 KRETIAWGTPHMPG  720 (729)
T ss_dssp             CCCCCCTTCCSSTT
T ss_pred             eeecccCcccccCC
Confidence            67778777666553

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.85  E-value=1.3e-21  Score=209.43  Aligned_cols=176  Identities=16%  Similarity=0.193  Sum_probs=142.3

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.++|++.+++.+..   +.....++++++|||+|++|+|+|..|++.|.+||++++.+.+++     . 
T Consensus       252 ~p~~~~ipG~~~~gv~~~~~~~~~l---~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~-----~-  322 (965)
T 2gag_A          252 HERPIVFENNDRPGIMLAGAVRSYL---NRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA-----A-  322 (965)
T ss_dssp             EECCCCCBTCCSTTEEEHHHHHHHH---HTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH-----H-
T ss_pred             ccCCCCCCCCCCCCEEEhHHHHHHH---HhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch-----h-
Confidence            4677889999999999766554332   111222568999999999999999999999999999999987643     2 


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-------C--cEEecCeEEEecCCCCCchhhhcccccccCc
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-------G--NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGG  154 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-------g--~~i~~D~vi~a~G~~p~~~l~~~~l~~~~g~  154 (356)
                          .+.+++.||++++++.+++++.++++.+..+++.+       |  +++++|.|++++|++||++++..    .+++
T Consensus       323 ----~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~----~~g~  394 (965)
T 2gag_A          323 ----AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQ----RQGK  394 (965)
T ss_dssp             ----HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHH----TTCC
T ss_pred             ----HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHh----CCCc
Confidence                56688999999999999999863245555666654       5  67999999999999999998753    2578


Q ss_pred             EEEecccc-----cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          155 IKVTGRLQ-----SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       155 I~vd~~l~-----ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      |.+|++++     |+.|+|||+|||+..+.           ...|..||+.||.+|++
T Consensus       395 i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~-----------l~~A~~~G~~aA~~i~~  441 (965)
T 2gag_A          395 LDWDTTIHAFVPADAVANQHLAGAMTGRLD-----------TASALSTGAATGAAAAT  441 (965)
T ss_dssp             EEEETTTTEEEECSCCTTEEECGGGGTCCS-----------HHHHHHHHHHHHHHHHH
T ss_pred             EEEcCcccccccCCCCCCEEEEEecCCchh-----------HHHHHHHHHHHHHHHHH
Confidence            99999887     89999999999997642           34799999999999975

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.85  E-value=1.1e-22  Score=199.46  Aligned_cols=197  Identities=15%  Similarity=0.128  Sum_probs=142.7

Q ss_pred             CCCCCCCCCCeEEeCCHHHHHHHHHHHhcC-CCCcEEEECCch------HHHHH----HHHHHHCC----CcEEEEeeCC
Q 018416            8 FGLSGSDAENVCYLRDLADANRLVNVMKSC-SGGNAVVIGGGY------IGMEC----AASLVINK----INVTMVFPEA   72 (356)
Q Consensus         8 ~~ipG~~~~~v~~l~~~~da~~i~~~l~~~-~~~~vvVvGgG~------iGlE~----A~~L~~~G----~~Vtlv~~~~   72 (356)
                      +++||.+ ++++++++++|+.++++.+.+. ..+.++|+|++.      .+.|+    +..+.++|    .+|++++..+
T Consensus       111 ~~i~G~~-e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~  189 (430)
T 3hyw_A          111 FGAEGQE-ENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEP  189 (430)
T ss_dssp             CCSBTHH-HHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSS
T ss_pred             CCccCcc-cCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccc
Confidence            5788875 6788999999999998877643 234455555542      23343    34455555    4789998887


Q ss_pred             ccCC--ccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCchhhhccc
Q 018416           73 HCMA--RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFEGQL  148 (356)
Q Consensus        73 ~~l~--~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~l~~~~l  148 (356)
                      .+.+  ...++...+.+++.|+++||++++++.|++++.   +.+ .++..+|  +++++|++++++|++|+..+.....
T Consensus       190 ~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~---~~~-~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~  265 (430)
T 3hyw_A          190 YLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEP---DKV-IYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGD  265 (430)
T ss_dssp             STTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECS---SEE-EEECTTSCEEEEECSEEEEECEEECCHHHHTTCT
T ss_pred             hhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeC---Cce-EEEeeCCCceEeecceEEEeccCCCchHHHhccc
Confidence            6532  225677888999999999999999999999953   222 2343343  5799999999999999866655543


Q ss_pred             c--c-ccCcEEEecccc-cCCCCEEEEccccccCccccCc--ccccccHHHHHHHHHHHHHHHcCCC
Q 018416          149 T--L-EKGGIKVTGRLQ-SSNSSVYAVGDVAAFPLKLLGE--TRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       149 ~--~-~~g~I~vd~~l~-ts~~~VyAiGD~~~~~~~~~g~--~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      .  . .+|.|.||++|| |++|||||+|||+..+......  ....+.++.|++||+.+|+||+...
T Consensus       266 ~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l  332 (430)
T 3hyw_A          266 KVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDI  332 (430)
T ss_dssp             TTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHh
Confidence            3  3 346799999999 7999999999999877532111  1124678899999999999998543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.84  E-value=2.2e-21  Score=191.75  Aligned_cols=189  Identities=22%  Similarity=0.274  Sum_probs=137.4

Q ss_pred             CccCCCCCCCCCCeEEeCCHHHHHH-HH---HHHhcCCCCcEEEECCchHHHHHHHHHHHC-------------------
Q 018416            5 LEEFGLSGSDAENVCYLRDLADANR-LV---NVMKSCSGGNAVVIGGGYIGMECAASLVIN-------------------   61 (356)
Q Consensus         5 p~~~~ipG~~~~~v~~l~~~~da~~-i~---~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~-------------------   61 (356)
                      |+.+++||.+.+++++.+++....+ ..   ..+....+++++|||+|++|+|+|..|++.                   
T Consensus       109 ~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~  188 (456)
T 1lqt_A          109 DRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRP  188 (456)
T ss_dssp             ECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHH
Confidence            6778999998889987654421100 00   011112578999999999999999999974                   


Q ss_pred             -C-CcEEEEeeCCccCCccCCH-------------------HH------------------HHHHHHHHHh------CCC
Q 018416           62 -K-INVTMVFPEAHCMARLFTP-------------------KI------------------ASYYEEYYKS------KGV   96 (356)
Q Consensus        62 -G-~~Vtlv~~~~~~l~~~~d~-------------------~~------------------~~~~~~~l~~------~GV   96 (356)
                       | .+|++++|++.+... |++                   ++                  .+.+.+.+++      +||
T Consensus       189 ~g~~~V~lv~r~~~~~~~-f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv  267 (456)
T 1lqt_A          189 RGIQEVVIVGRRGPLQAA-FTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRM  267 (456)
T ss_dssp             CCCCEEEEECSSCGGGCC-CCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEE
T ss_pred             CCCcEEEEEecCChhhhc-cChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceE
Confidence             5 499999999876554 221                   11                  2444555555      799


Q ss_pred             EEEeCCeeeEEEEcCCCcEEEEEeC----------------CC--cEEecCeEEEecCCCCCchhhhccccc-ccCcEEE
Q 018416           97 KFVKGTVLSSFDVDSNGKVVAVNLR----------------DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKV  157 (356)
Q Consensus        97 ~v~~~~~v~~i~~~~~g~v~~v~~~----------------~g--~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~I~v  157 (356)
                      +++++++++++..  ++.+..+++.                +|  ++++||+|++++|++|++ +  .++.+ ++++|.+
T Consensus       268 ~i~~~~~~~~i~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l--~gl~~d~~g~i~v  342 (456)
T 1lqt_A          268 VFRFLTSPIEIKG--KRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T--PGLPFDDQSGTIP  342 (456)
T ss_dssp             EEECSEEEEEEEC--SSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C--TTSCCBTTTTBCC
T ss_pred             EEEeCCCCeEEec--CCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC-C--CCCcccCCCCeeE
Confidence            9999999999985  3443334442                34  469999999999999998 3  34555 5688999


Q ss_pred             ecccc-cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416          158 TGRLQ-SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       158 d~~l~-ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                      |+++| |+.|+|||+|||+..+..         .+..|+.||+.+|.+|++.
T Consensus       343 n~~~rvt~~pgvya~GD~~~gp~~---------~i~~a~~~g~~~a~~i~~~  385 (456)
T 1lqt_A          343 NVGGRINGSPNEYVVGWIKRGPTG---------VIGTNKKDAQDTVDTLIKN  385 (456)
T ss_dssp             EETTEETTCSSEEECTHHHHCSCS---------CTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCEEEEeccCCCCch---------hHHHHHHHHHHHHHHHHHH
Confidence            99999 799999999999975432         3446889999999998753

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.83  E-value=3.9e-21  Score=181.83  Aligned_cols=182  Identities=19%  Similarity=0.233  Sum_probs=128.1

Q ss_pred             CCccCCCCCCCCC--CeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC-CccCCccC-
Q 018416            4 KLEEFGLSGSDAE--NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCMARLF-   79 (356)
Q Consensus         4 ~p~~~~ipG~~~~--~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~-~~~l~~~~-   79 (356)
                      +|+.+++||.+..  .++......+..       ...+++++|||+|++|+|+|..|++.| +||++.++ +.+++..+ 
T Consensus       133 ~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~  204 (357)
T 4a9w_A          133 EAYTPEYQGLESFAGIQLHSAHYSTPA-------PFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVD  204 (357)
T ss_dssp             GBCCCCCTTGGGCCSEEEEGGGCCCSG-------GGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCC
T ss_pred             CCCCCCCCCccccCCcEEEeccCCChh-------hcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhc
Confidence            4666788886532  122222221211       125799999999999999999999998 69999988 56666432 


Q ss_pred             CHHHHHHHHHHHH----------------------------hCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeE
Q 018416           80 TPKIASYYEEYYK----------------------------SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV  131 (356)
Q Consensus        80 d~~~~~~~~~~l~----------------------------~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~v  131 (356)
                      +.++.+.+.+.+.                            +.|+ +..+..+++++.  +    .+.+.+|+++++|.|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~--~----~v~~~~g~~i~~D~v  277 (357)
T 4a9w_A          205 GRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSP--T----GMQWADGTERAFDAV  277 (357)
T ss_dssp             THHHHTC----------------------CBCCCHHHHHHHHTTC-CCEECCCSEEET--T----EEECTTSCEEECSEE
T ss_pred             CccHHHHHHHHHhccccccCCCcccccccCcccChhHHHHHhcCc-eEEecCcceEeC--C----eeEECCCCEecCCEE
Confidence            3444444333332                            3454 555667777753  1    477899999999999


Q ss_pred             EEecCCCCCchhhhcc-cccccCcEEEecc--cccCCCCEEEEc--cccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          132 VVGIGIRPNTSLFEGQ-LTLEKGGIKVTGR--LQSSNSSVYAVG--DVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       132 i~a~G~~p~~~l~~~~-l~~~~g~I~vd~~--l~ts~~~VyAiG--D~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      ++++|++|++++++.. +..++|+|.||++  ++|+.|+|||+|  ||+....         ..+..|..||+.+|.+|.
T Consensus       278 i~a~G~~p~~~~l~~~gl~~~~G~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~---------~~~~~A~~~g~~~a~~i~  348 (357)
T 4a9w_A          278 IWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVWLLGYGDWNGMAS---------ATLIGVTRYAREAVRQVT  348 (357)
T ss_dssp             EECCCBCCCCGGGTTTTCBCTTSCBCBCTTSCBBSSCTTEEECSSCGGGSTTC---------SSTTTHHHHHHHHHHHHH
T ss_pred             EECCCcCCCCcccCcccccCCCCCccccCCcccCCCCCCeEEeccccccccch---------hhhhhhHHHHHHHHHHHH
Confidence            9999999999988764 5557789999999  999999999999  5554221         234468899999999987


Q ss_pred             CCC
Q 018416          207 EPD  209 (356)
Q Consensus       207 g~~  209 (356)
                      ...
T Consensus       349 ~~l  351 (357)
T 4a9w_A          349 AYC  351 (357)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            543

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.81  E-value=8.9e-20  Score=189.03  Aligned_cols=174  Identities=20%  Similarity=0.151  Sum_probs=136.8

Q ss_pred             CccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEEC--CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            5 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIG--GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         5 p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvG--gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      |..+++||.+.+++++.   .+...   . ....+++++|||  +|++|+|+|..|++.|.+||++++.+.+++...++.
T Consensus       496 ~~~~~i~G~~~~~v~~~---~~~l~---~-~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~  568 (690)
T 3k30_A          496 FHTTALPIAEGMQVLGP---DDLFA---G-RLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTF  568 (690)
T ss_dssp             SCSSCCCBCTTSEEECH---HHHHT---T-CCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGT
T ss_pred             cCCCCCCCCCCCcEEcH---HHHhC---C-CCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccch
Confidence            66788999887777643   23221   1 122567899999  999999999999999999999999999887644566


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE---eCCCcEEecCeEEEecCCCCCchhhhcccccccCcEEEec
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG  159 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~---~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~~~g~I~vd~  159 (356)
                      ....+.+.|+++||+++++++|++++.  ++  ..+.   ..+++++++|.||+++|++|++.++.....  .+.     
T Consensus       569 ~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~--~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~--~~~-----  637 (690)
T 3k30_A          569 EVNRIQRRLIENGVARVTDHAVVAVGA--GG--VTVRDTYASIERELECDAVVMVTARLPREELYLDLVA--RRD-----  637 (690)
T ss_dssp             CHHHHHHHHHHTTCEEEESEEEEEEET--TE--EEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHH--HHH-----
T ss_pred             hHHHHHHHHHHCCCEEEcCcEEEEEEC--Ce--EEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhh--hhc-----
Confidence            788889999999999999999999974  33  1232   235568999999999999999998764211  111     


Q ss_pred             ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                        +|+.|+|||+|||+...           .+..|+.||+.||.+|.+..
T Consensus       638 --~t~~~~VyaiGD~~~~~-----------~~~~A~~~g~~aa~~i~~~l  674 (690)
T 3k30_A          638 --AGEIASVRGIGDAWAPG-----------TIAAAVWSGRRAAEEFDAVL  674 (690)
T ss_dssp             --HTSCSEEEECGGGTSCB-----------CHHHHHHHHHHHHHHTTCCC
T ss_pred             --ccCCCCEEEEeCCCchh-----------hHHHHHHHHHHHHHHHHhhc
Confidence              78999999999999753           45679999999999998864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.79  E-value=3.7e-19  Score=176.19  Aligned_cols=166  Identities=12%  Similarity=0.088  Sum_probs=127.9

Q ss_pred             CCccCCCCCCCC-CC-eEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCH
Q 018416            4 KLEEFGLSGSDA-EN-VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP   81 (356)
Q Consensus         4 ~p~~~~ipG~~~-~~-v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~   81 (356)
                      +|+.+++||.+. ++ +++..++.+..       ...+|+|+|||+|++|+|+|..|++.|.+||++++++.+++..++ 
T Consensus       167 ~p~~p~ipG~~~~~g~~~hs~~~~~~~-------~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~~~-  238 (464)
T 2xve_A          167 TPYVPEFEGFEKFGGRILHAHDFRDAL-------EFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWP-  238 (464)
T ss_dssp             SBCCCCCBTTTTCCSEEEEGGGCCCGG-------GGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCCCC-
T ss_pred             CCccCCCCCcccCCceEEehhhhCCHh-------HcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCCCC-
Confidence            688888999763 33 44433322221       125899999999999999999999999999999999888764332 


Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc--cccccC-cEEEe
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ--LTLEKG-GIKVT  158 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~--l~~~~g-~I~vd  158 (356)
                                  .||+++  ..|+++++   +   .+.+.||+++++|.||+|+|++|+++++...  +..+++ .+ +|
T Consensus       239 ------------~~V~~~--~~V~~i~~---~---~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v-~~  297 (464)
T 2xve_A          239 ------------ENWDER--PNLVRVDT---E---NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-LN  297 (464)
T ss_dssp             ------------TTEEEC--SCEEEECS---S---EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCC-SS
T ss_pred             ------------CceEEc--CCeEEEeC---C---EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCccc-cc
Confidence                        588887  67888852   2   4778999999999999999999999987652  444444 55 44


Q ss_pred             cc---cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          159 GR---LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       159 ~~---l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      .+   ++|+.|+|||+|||...           ..+..|..||+.++.+|.|..
T Consensus       298 ~~~~~~~t~~p~i~aiGd~~~~-----------~~~~~a~~qa~~~a~~l~G~~  340 (464)
T 2xve_A          298 LYKGVVWEDNPKFFYIGMQDQW-----------YSFNMFDAQAWYARDVIMGRL  340 (464)
T ss_dssp             EETTTEESSSTTEEECSCSCCS-----------SCHHHHHHHHHHHHHHHTTSS
T ss_pred             ccceEecCCCCCEEEEeCcccc-----------cchHHHHHHHHHHHHHHcCCC
Confidence            43   67899999999998863           246678899999999998754

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.77  E-value=1.9e-18  Score=172.32  Aligned_cols=153  Identities=16%  Similarity=0.122  Sum_probs=123.9

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.+++||.+.+++++.+   ++..+.+.....++++++|||+|++|+|                              
T Consensus       218 ~~~~~~~~g~~~~gv~~~~---~~~~~~~~~~~~~~~~vvViGgG~~gle------------------------------  264 (493)
T 1y56_A          218 IDSTMLFENNDMPGVFRRD---FALEVMNVWEVAPGRKVAVTGSKADEVI------------------------------  264 (493)
T ss_dssp             EECCCCCTTTTSTTEEEHH---HHHHHHHTSCBCSCSEEEEESTTHHHHH------------------------------
T ss_pred             CccCCCCCCCCCCCEEEcH---HHHHHHHhcccCCCCEEEEECCCHHHHH------------------------------
Confidence            4667789999999998754   4444444333346799999999999998                              


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc---ccCcEE-Ee
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL---EKGGIK-VT  158 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~---~~g~I~-vd  158 (356)
                           +.++++||++++++.+++++.  ++.+..+.+.+|+++++|.|++++|.+|++++++.. +..   ++|+|. ||
T Consensus       265 -----~~l~~~GV~v~~~~~v~~i~~--~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd  337 (493)
T 1y56_A          265 -----QELERWGIDYVHIPNVKRVEG--NEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLD  337 (493)
T ss_dssp             -----HHHHHHTCEEEECSSEEEEEC--SSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCC
T ss_pred             -----HHHHhCCcEEEeCCeeEEEec--CCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccc
Confidence                 456788999999999999985  334556778889999999999999999999987654 433   366777 89


Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                      ++++ +.|+|||+|||+..           .++..|..||+.||.+|.+.
T Consensus       338 ~~~~-s~~~vya~GD~~~~-----------~~~~~A~~~g~~aa~~i~~~  375 (493)
T 1y56_A          338 EYHR-IKDGIYVAGSAVSI-----------KPHYANYLEGKLVGAYILKE  375 (493)
T ss_dssp             TTSE-EETTEEECSTTTCC-----------CCHHHHHHHHHHHHHHHHHH
T ss_pred             cccC-cCCCEEEEeccCCc-----------cCHHHHHHHHHHHHHHHHHH
Confidence            9999 99999999999974           35778999999999999864

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.77  E-value=9.7e-19  Score=180.72  Aligned_cols=167  Identities=23%  Similarity=0.250  Sum_probs=131.5

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCC--------------------
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--------------------   63 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~--------------------   63 (356)
                      +|+.+++||.+.+++++..   +.  +..  ....+++|+|||||++|+|+|..|++.|.                    
T Consensus       466 ~p~~~~i~G~~~~~v~~~~---~~--l~~--~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~  538 (671)
T 1ps9_A          466 VPRTPPIDGIDHPKVLSYL---DV--LRD--KAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQ  538 (671)
T ss_dssp             EECCCCCBTTTSTTEEEHH---HH--HTS--CCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCC
T ss_pred             CcCCCCCCCCCCCcEeeHH---HH--hhC--CCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhccccccc
Confidence            5788899998877888642   22  111  11257999999999999999999998873                    


Q ss_pred             -----------------cEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--c
Q 018416           64 -----------------NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--N  124 (356)
Q Consensus        64 -----------------~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~  124 (356)
                                       +|+++++.+..+...+++.....+.+.|+++||++++++++++++.  ++ + .++ .+|  +
T Consensus       539 ~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~-v-~~~-~~G~~~  613 (671)
T 1ps9_A          539 QAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DG-L-HVV-INGETQ  613 (671)
T ss_dssp             SGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TE-E-EEE-ETTEEE
T ss_pred             ccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce-E-EEe-cCCeEE
Confidence                             5677888777776667888888889999999999999999999973  33 2 232 567  5


Q ss_pred             EEecCeEEEecCCCCCchhhhcccccccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHH
Q 018416          125 RLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA  204 (356)
Q Consensus       125 ~i~~D~vi~a~G~~p~~~l~~~~l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~  204 (356)
                      ++++|.||+++|++||+++++.              +++..++||++|||+....         ..+..|++||+.+|.+
T Consensus       614 ~i~~D~Vi~a~G~~p~~~l~~~--------------l~~~g~~v~aiGD~~~~~~---------~~~~~A~~~g~~aA~~  670 (671)
T 1ps9_A          614 VLAVDNVVICAGQEPNRALAQP--------------LIDSGKTVHLIGGCDVAME---------LDARRAIAQGTRLALE  670 (671)
T ss_dssp             EECCSEEEECCCEEECCTTHHH--------------HHTTTCCEEECGGGTCCSS---------CCHHHHHHHHHHHHHH
T ss_pred             EEeCCEEEECCCccccHHHHHH--------------HHhcCCCEEEECCcCccCc---------hhHHHHHHHHHHHHHh
Confidence            7999999999999999988753              2334578999999998643         2478999999999988


Q ss_pred             H
Q 018416          205 I  205 (356)
Q Consensus       205 i  205 (356)
                      |
T Consensus       671 i  671 (671)
T 1ps9_A          671 I  671 (671)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.74  E-value=1.8e-17  Score=149.07  Aligned_cols=154  Identities=14%  Similarity=0.176  Sum_probs=112.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc-----------------cCCccCC-------HHHHHHHHHHHHhC-
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-----------------CMARLFT-------PKIASYYEEYYKSK-   94 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~-----------------~l~~~~d-------~~~~~~~~~~l~~~-   94 (356)
                      .+|+|||||++|+++|..|+++|.+|+++++...                 ++.. ++       .++.+.+.+.+++. 
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~-~~d~~g~~~~~~~~~l~~~~~~~~   82 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLER-AYDPKDERVWAFHARAKYLLEGLR   82 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHH-HCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhh-hccCCCCCHHHHHHHHHHHHHcCC
Confidence            5799999999999999999999999999999721                 1111 11       36777888889887 


Q ss_pred             CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc--------------------hhhh----ccccc
Q 018416           95 GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT--------------------SLFE----GQLTL  150 (356)
Q Consensus        95 GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~--------------------~l~~----~~l~~  150 (356)
                      |++++ +++++++.. +++.+..+.+.+|+++++|.||+|+|..++.                    .+.+    ..+..
T Consensus        83 gv~i~-~~~v~~i~~-~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~  160 (232)
T 2cul_A           83 PLHLF-QATATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRF  160 (232)
T ss_dssp             TEEEE-ECCEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCE
T ss_pred             CcEEE-EeEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeE
Confidence            99999 568999986 3556667888889899999999999984442                    2322    11211


Q ss_pred             ccCc----------------EEEe-------cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          151 EKGG----------------IKVT-------GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       151 ~~g~----------------I~vd-------~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      .++.                ..+.       ...+|++|+|||+|||+ ..          .....|+.||+.+|.+|..
T Consensus       161 ~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~----------g~~~~~~~~g~~~a~~i~~  229 (232)
T 2cul_A          161 VEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-RE----------GDYARMSEEGKRLAEHLLH  229 (232)
T ss_dssp             EEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SC----------CCHHHHHHHHHHHHHHHHH
T ss_pred             EccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cC----------ccHHHHHHHHHHHHHHHHh
Confidence            1100                0011       01237999999999999 53          2567889999999999864

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.73  E-value=8.2e-18  Score=165.89  Aligned_cols=160  Identities=16%  Similarity=0.130  Sum_probs=113.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCcc-------------------CCHHHHHHHHHHHHh---
Q 018416           38 SGGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARL-------------------FTPKIASYYEEYYKS---   93 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~~-------------------~d~~~~~~~~~~l~~---   93 (356)
                      ++++|+|||+|.+|+|+|..|++.  +.+||+++|++.+++..                   ++++....+.+.+..   
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  305 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNY  305 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTS
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCC
Confidence            478999999999999999999999  99999999999876521                   223333333333222   


Q ss_pred             -----------------------CCCEEEeCCeeeEEEEcCCCcEEEEEeC---CCcE--EecCeEEEecCCCCC--chh
Q 018416           94 -----------------------KGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGNR--LPTDMVVVGIGIRPN--TSL  143 (356)
Q Consensus        94 -----------------------~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~~--i~~D~vi~a~G~~p~--~~l  143 (356)
                                             .||++++++.|++++.++++  ..+.+.   +|+.  +++|.||+|+|.+|+  +.+
T Consensus       306 ~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~  383 (463)
T 3s5w_A          306 SVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQG--IELALRDAGSGELSVETYDAVILATGYERQLHRQL  383 (463)
T ss_dssp             SCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTE--EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTT
T ss_pred             CcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCE--EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccch
Confidence                                   69999999999999874333  345554   6654  999999999999999  555


Q ss_pred             hhcccccccCcEEEecccccC-----CCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHH
Q 018416          144 FEGQLTLEKGGIKVTGRLQSS-----NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI  205 (356)
Q Consensus       144 ~~~~l~~~~g~I~vd~~l~ts-----~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  205 (356)
                      +....... |+|.||+++++.     .|+|||+|||.......  .+   .....|.++++++...+
T Consensus       384 l~~l~~~~-g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g~~--~~---~l~~~a~r~~~i~~~~~  444 (463)
T 3s5w_A          384 LEPLAEYL-GDHEIGRDYRLQTDERCKVAIYAQGFSQASHGLS--DT---LLSVLPVRAEEISGSLY  444 (463)
T ss_dssp             TGGGGGGB-C--CCCTTSBCCBCTTBCSEEEESSCCHHHHCTT--TT---SSTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHh-CCcccCcccccccCCCCCCeEEEcCCCcccCCcC--cc---chhHHHHHHHHHHHHHH
Confidence            54321112 899999999974     46799999998754321  11   23446778888776654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.71  E-value=1.1e-17  Score=164.67  Aligned_cols=166  Identities=12%  Similarity=0.094  Sum_probs=125.2

Q ss_pred             CCccCCCCCCCC------CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCccCC
Q 018416            4 KLEEFGLSGSDA------ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMA   76 (356)
Q Consensus         4 ~p~~~~ipG~~~------~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~~l~   76 (356)
                      +|+.+++||.+.      ..+++.+++.+...       ..+++|+|||+|++|+|+|..|++.|.+ ||++++++.+  
T Consensus       178 ~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~-------~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~--  248 (447)
T 2gv8_A          178 VPYIPNIKGLDEYAKAVPGSVLHSSLFREPEL-------FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD--  248 (447)
T ss_dssp             SBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGG-------GTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS--
T ss_pred             CCCCCCCCChhhhhccCCccEEEecccCChhh-------cCCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc--
Confidence            577778888642      23665554433322       1589999999999999999999999999 9999998765  


Q ss_pred             ccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcE-EecCeEEEecCCCCCchh-----hhcc-cc
Q 018416           77 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTSL-----FEGQ-LT  149 (356)
Q Consensus        77 ~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~-i~~D~vi~a~G~~p~~~l-----~~~~-l~  149 (356)
                                    +++.||++  ...|++++. +++   .|.+.||+. +++|.||+|+|++|++++     ++.. ..
T Consensus       249 --------------l~~~~i~~--~~~v~~~~~-~~~---~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~~  308 (447)
T 2gv8_A          249 --------------IQNESLQQ--VPEITKFDP-TTR---EIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETK  308 (447)
T ss_dssp             --------------CBCSSEEE--ECCEEEEET-TTT---EEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTTC
T ss_pred             --------------CCCCCeEE--ecCeEEEec-CCC---EEEECCCCEeccCCEEEECCCCCcCCCCCcccccccccCc
Confidence                          34567774  467888864 222   577889976 799999999999999988     5542 11


Q ss_pred             c-ccCcEEEecccc---cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          150 L-EKGGIKVTGRLQ---SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       150 ~-~~g~I~vd~~l~---ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      . .++.+.+|.+.+   +++|++|++||+....           .+..|..||+.+|.+|.|..
T Consensus       309 i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~-----------~~~~a~~qa~~~a~~~~g~~  361 (447)
T 2gv8_A          309 LIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV-----------PFPTSQAQAAFLARVWSGRL  361 (447)
T ss_dssp             CCSSSSSCCSEETTTEETTCTTEEESSCCBSSC-----------HHHHHHHHHHHHHHHHTTSS
T ss_pred             eecCCCcccccccccccCCCCcEEEEecccccc-----------CchHHHHHHHHHHHHHcCCC
Confidence            1 345566666665   6899999999997642           46678999999999998754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.53  E-value=1e-14  Score=146.93  Aligned_cols=179  Identities=17%  Similarity=0.234  Sum_probs=118.4

Q ss_pred             CCccCCCCCCCC-CC-eEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc-CCc---
Q 018416            4 KLEEFGLSGSDA-EN-VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-MAR---   77 (356)
Q Consensus         4 ~p~~~~ipG~~~-~~-v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~-l~~---   77 (356)
                      +|+.+++||.+. .+ ++......+.       ....+|+|+|||+|.+|+|+|..|++.+.+||+++|.+++ ++.   
T Consensus       148 ~p~~p~ipG~~~f~g~~~~~~~~~~~-------~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~  220 (540)
T 3gwf_A          148 AINFPNLPGLDTFEGETIHTAAWPEG-------KSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNR  220 (540)
T ss_dssp             SBCCCCCTTGGGCCSEEEEGGGCCSS-------CCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCC
T ss_pred             cCCCCCCCCccccCCCEEEeecCCCc-------cccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccC
Confidence            678889999762 22 2322211111       1136899999999999999999999999999999999983 332   


Q ss_pred             cCCHHHHHHHHH--------------------------------------------------------------------
Q 018416           78 LFTPKIASYYEE--------------------------------------------------------------------   89 (356)
Q Consensus        78 ~~d~~~~~~~~~--------------------------------------------------------------------   89 (356)
                      .+++...+.+++                                                                    
T Consensus       221 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  300 (540)
T 3gwf_A          221 PVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAA  300 (540)
T ss_dssp             BCCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHH
Confidence            122222222210                                                                    


Q ss_pred             -----H---------------------------------HHhCCCEEEe--CCeeeEEEEcCCCcEEEEEeCCCcEEecC
Q 018416           90 -----Y---------------------------------YKSKGVKFVK--GTVLSSFDVDSNGKVVAVNLRDGNRLPTD  129 (356)
Q Consensus        90 -----~---------------------------------l~~~GV~v~~--~~~v~~i~~~~~g~v~~v~~~~g~~i~~D  129 (356)
                           .                                 |.+.+|+++.  +..|+++++  +    .|.++||+++++|
T Consensus       301 ~~~~~~~~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~--~----gv~~~dG~~~~~D  374 (540)
T 3gwf_A          301 SFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTA--K----GVVTEDGVLHELD  374 (540)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECS--S----EEEETTCCEEECS
T ss_pred             HHHHHHHHHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEec--C----eEEcCCCCEEECC
Confidence                 0                                 1144788886  778888864  2    4788999999999


Q ss_pred             eEEEecCCCCCchhhhccccc-ccCcEEEecc----------ccc-CCCCEEEE-ccccccCccccCcccccccHHHHHH
Q 018416          130 MVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGR----------LQS-SNSSVYAV-GDVAAFPLKLLGETRRLEHVDSARK  196 (356)
Q Consensus       130 ~vi~a~G~~p~~~l~~~~l~~-~~g~I~vd~~----------l~t-s~~~VyAi-GD~~~~~~~~~g~~~~~~~~~~A~~  196 (356)
                      .||+|||+++++.++... .. .++++.++++          +.+ +.||+|.+ |..+...          .....+..
T Consensus       375 vIV~ATGf~~~~~~~~~~-~i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~----------s~~~~~e~  443 (540)
T 3gwf_A          375 VLVFATGFDAVDGNYRRI-EIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFT----------NLPPSIET  443 (540)
T ss_dssp             EEEECCCBSCSSHHHHTS-EEECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCS----------CHHHHHHH
T ss_pred             EEEECCccCccccCcCcc-eEECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCc----------cHHHHHHH
Confidence            999999999998654432 11 2334444432          233 78999999 8765411          12345667


Q ss_pred             HHHHHHHHHc
Q 018416          197 SAKHAVAAIM  206 (356)
Q Consensus       197 ~g~~aa~~i~  206 (356)
                      |++.+++.|.
T Consensus       444 q~~~i~~~i~  453 (540)
T 3gwf_A          444 QVEWISDTIG  453 (540)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888887764

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.50  E-value=8.9e-14  Score=128.63  Aligned_cols=165  Identities=15%  Similarity=0.137  Sum_probs=116.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHC-CCcEEEEeeCCccCCc------------------------------------c-CCH
Q 018416           40 GNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMAR------------------------------------L-FTP   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~-G~~Vtlv~~~~~~l~~------------------------------------~-~d~   81 (356)
                      .+|+|||||++|+++|..|++. |.+|+|+++.+.+...                                    . ...
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  119 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA  119 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence            4799999999999999999997 9999999998765211                                    0 124


Q ss_pred             HHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeC---------CC-----cEEecCeEEEecCCCCCchh---
Q 018416           82 KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----NRLPTDMVVVGIGIRPNTSL---  143 (356)
Q Consensus        82 ~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----~~i~~D~vi~a~G~~p~~~l---  143 (356)
                      ++...+.+.+.+ .||+++++++++++.. +++.+..+.+.         ++     .++++|.||+|+|..++..-   
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~-~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~  198 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV  198 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEe-cCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence            455566666765 6999999999999986 34555555542         22     57999999999998877531   


Q ss_pred             --hhc-c--ccc-ccCcEEEec-------ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416          144 --FEG-Q--LTL-EKGGIKVTG-------RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       144 --~~~-~--l~~-~~g~I~vd~-------~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                        +.. .  +.. ...++.+|.       +.+|+.|++|++||++..   .+|.++..+.+..+..+|+.+|.++...
T Consensus       199 ~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~---~~g~~~~gp~~~~~~~sG~~~a~~i~~~  273 (284)
T 1rp0_A          199 KRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAE---IDGAPRMGPTFGAMMISGQKAGQLALKA  273 (284)
T ss_dssp             HHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHH---HHTCEECCSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhh---hcCCCCcChHHHHHHHhHHHHHHHHHHH
Confidence              110 1  111 123344442       446778999999998753   2344555566778889999999998753

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.34  E-value=6e-13  Score=134.02  Aligned_cols=181  Identities=12%  Similarity=0.145  Sum_probs=115.0

Q ss_pred             CCccCCCCCCC-CCC--eEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-Cc--
Q 018416            4 KLEEFGLSGSD-AEN--VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-AR--   77 (356)
Q Consensus         4 ~p~~~~ipG~~-~~~--v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-~~--   77 (356)
                      +|+.+++||.+ .++  +++.+...+..       ...+|+|+|||+|.+|+|+|..|++.+.+||+++|.+.+. +.  
T Consensus       155 ~p~~p~i~G~~~f~G~~~hs~~~~~~~~-------~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~  227 (542)
T 1w4x_A          155 VPQLPNFPGLKDFAGNLYHTGNWPHEPV-------DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARN  227 (542)
T ss_dssp             CCCCCCCTTGGGCCSEEEEGGGCCSSCC-------CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCC
T ss_pred             CCCCCCCCCcccCCCceEECCCCCCchh-------ccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCC
Confidence            57777899875 244  33222111111       1258999999999999999999999999999999988662 21  


Q ss_pred             -cCCHHHHH-----------------------------------------------------------------------
Q 018416           78 -LFTPKIAS-----------------------------------------------------------------------   85 (356)
Q Consensus        78 -~~d~~~~~-----------------------------------------------------------------------   85 (356)
                       .++++..+                                                                       
T Consensus       228 ~~~~~~~~~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~  307 (542)
T 1w4x_A          228 APLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAE  307 (542)
T ss_dssp             CBCCHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHH
Confidence             01221111                                                                       


Q ss_pred             HHHHHH-----------------------------------HhCCCEEE--eCCeeeEEEEcCCCcEEEEEeCCCcEEec
Q 018416           86 YYEEYY-----------------------------------KSKGVKFV--KGTVLSSFDVDSNGKVVAVNLRDGNRLPT  128 (356)
Q Consensus        86 ~~~~~l-----------------------------------~~~GV~v~--~~~~v~~i~~~~~g~v~~v~~~~g~~i~~  128 (356)
                      .+++.+                                   .+.+|+++  .+..|+++++  +    .|.++| +++++
T Consensus       308 ~~~~~~~~~~~~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~--~----gv~~~d-~~~~~  380 (542)
T 1w4x_A          308 FIRNKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITP--R----GVRTSE-REYEL  380 (542)
T ss_dssp             HHHHHHHHHCSSHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECS--S----EEEESS-CEEEC
T ss_pred             HHHHHHHHHcCCHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcC--C----eEEeCC-eEEec
Confidence            011111                                   11346666  3667888853  2    477888 89999


Q ss_pred             CeEEEecCCCCCchhhhcccccccCcEEEecccc----------c-CCCCEEEE-ccccccCccccCcccccccH-HHHH
Q 018416          129 DMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQ----------S-SNSSVYAV-GDVAAFPLKLLGETRRLEHV-DSAR  195 (356)
Q Consensus       129 D~vi~a~G~~p~~~l~~~~l~~~~g~I~vd~~l~----------t-s~~~VyAi-GD~~~~~~~~~g~~~~~~~~-~~A~  195 (356)
                      |.||+|+|+++++.++...-...++++.++++.+          . ..||+|++ |+.+...         .+++ ..|.
T Consensus       381 D~ii~atG~~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~---------~~~~~~~~e  451 (542)
T 1w4x_A          381 DSLVLATGFDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSA---------LSNMLVSIE  451 (542)
T ss_dssp             SEEEECCCCCCTTHHHHTSEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGG---------GSCHHHHHH
T ss_pred             CEEEEcCCccccccCcCceeeECCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcc---------cccHHHHHH
Confidence            9999999999988876542112334555555322          1 45666666 6654211         1333 6788


Q ss_pred             HHHHHHHHHHcC
Q 018416          196 KSAKHAVAAIME  207 (356)
Q Consensus       196 ~~g~~aa~~i~g  207 (356)
                      .|++.++++|..
T Consensus       452 ~q~~~ia~~i~~  463 (542)
T 1w4x_A          452 QHVEWVTDHIAY  463 (542)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999864

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.34  E-value=6.3e-13  Score=133.93  Aligned_cols=187  Identities=12%  Similarity=0.115  Sum_probs=111.7

Q ss_pred             CCccCCCCCCCC-CC--eEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc-CCc--
Q 018416            4 KLEEFGLSGSDA-EN--VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-MAR--   77 (356)
Q Consensus         4 ~p~~~~ipG~~~-~~--v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~-l~~--   77 (356)
                      +|+.+++||.+. .+  +++.+...+...+.+.+ ...+|+|+|||+|.+|+|+|..|++.+.+||+++|.+++ ++.  
T Consensus       148 ~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~-~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~  226 (545)
T 3uox_A          148 ASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGV-DFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGN  226 (545)
T ss_dssp             C---CCCTTGGGCCSEEEEGGGCCBCTTSCBSCC-CCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCC
T ss_pred             CCcCCCCCCccccCCCeEEccccccccccccccc-ccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCc
Confidence            678889999763 22  22222111100000001 125899999999999999999999999999999999984 332  


Q ss_pred             -cCCHHHHHHHH--------------------------------------------------------------------
Q 018416           78 -LFTPKIASYYE--------------------------------------------------------------------   88 (356)
Q Consensus        78 -~~d~~~~~~~~--------------------------------------------------------------------   88 (356)
                       .+++...+.++                                                                    
T Consensus       227 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (545)
T 3uox_A          227 SPMSKEKMDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLA  306 (545)
T ss_dssp             CBCCHHHHHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHH
Confidence             12222211111                                                                    


Q ss_pred             ---------------------------------------HHHHhCCCEEEe--CCeeeEEEEcCCCcEEEEEeCCCcEEe
Q 018416           89 ---------------------------------------EYYKSKGVKFVK--GTVLSSFDVDSNGKVVAVNLRDGNRLP  127 (356)
Q Consensus        89 ---------------------------------------~~l~~~GV~v~~--~~~v~~i~~~~~g~v~~v~~~~g~~i~  127 (356)
                                                             +.|.+.+|+++.  +..|++|++  +    .|.+.|| +++
T Consensus       307 ~~~~~~~~~~v~d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~--~----gv~~~dG-~~~  379 (545)
T 3uox_A          307 DFVAKKIRQRVKDPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTP--E----GIKTADA-AYD  379 (545)
T ss_dssp             HHHHHHHHHHCSCHHHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEET--T----EEEESSC-EEE
T ss_pred             HHHHHHHHHHcCCHHHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEcc--C----eEEeCCC-eee
Confidence                                                   011123788886  788888874  2    4778999 999


Q ss_pred             cCeEEEecCCCCCchhhhccccc-ccCcEEEecc-----------cccCCCCEEEEccccccCccccCcccccccHHHHH
Q 018416          128 TDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGR-----------LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSAR  195 (356)
Q Consensus       128 ~D~vi~a~G~~p~~~l~~~~l~~-~~g~I~vd~~-----------l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~  195 (356)
                      +|.||+|||+++++.++.. +.. ..++..++++           +-.+.||+|.+.--...    .+..   .....+.
T Consensus       380 ~D~IV~ATGf~~~~~~~~~-~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~----~~~~---s~~~~~e  451 (545)
T 3uox_A          380 LDVIIYATGFDAVTGSLDR-IDIRGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNG----STFC---NVGVCGG  451 (545)
T ss_dssp             CSEEEECCCCBSSSCSCTT-SEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGT----GGGS---CHHHHHH
T ss_pred             cCEEEECCccccccccCCC-ceEECCCCccHHHhhccccceeeccccCCCCcEEEEeCCCCC----Cccc---cHHHHHH
Confidence            9999999999987764432 222 2344444433           22378999998321111    1110   2234566


Q ss_pred             HHHHHHHHHHc
Q 018416          196 KSAKHAVAAIM  206 (356)
Q Consensus       196 ~~g~~aa~~i~  206 (356)
                      .|++.+++.|.
T Consensus       452 ~~~~~i~~~i~  462 (545)
T 3uox_A          452 LQAEWVLRMIS  462 (545)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            78888888764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.32  E-value=2.5e-12  Score=129.70  Aligned_cols=64  Identities=16%  Similarity=0.198  Sum_probs=48.0

Q ss_pred             CCccCCCCCCCC-CC-eEEeCCHH-HHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416            4 KLEEFGLSGSDA-EN-VCYLRDLA-DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus         4 ~p~~~~ipG~~~-~~-v~~l~~~~-da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      +|+.+++||.+. .+ +++..... +..       ...+|+|+|||+|.+|+|+|..|++.+.+||+++|.+++
T Consensus       160 ~p~~p~ipG~~~f~g~~~~~~~~~~~~~-------~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          160 NANTPAFDGLDRFTGDIVHTARWPHDGV-------DFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             ECCCCCCTTGGGCCSEEEEGGGCCTTCC-------CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCCCCCCCcccCCCceEEecccccccc-------ccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            578888999763 22 23222211 111       125899999999999999999999999999999999974

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.13  E-value=3.1e-11  Score=120.29  Aligned_cols=138  Identities=12%  Similarity=0.096  Sum_probs=99.0

Q ss_pred             CccCCCCCCCCCCeEEeCCHHHHHHH---------HHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416            5 LEEFGLSGSDAENVCYLRDLADANRL---------VNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus         5 p~~~~ipG~~~~~v~~l~~~~da~~i---------~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      |...++++.+.+++++.++..+..++         ..........+|+|||||++|+.+|..|++.|.+|+|+++.+.+.
T Consensus        49 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g  128 (497)
T 2bry_A           49 SGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFS  128 (497)
T ss_dssp             TTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCC
T ss_pred             CCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccC
Confidence            44444555555566677777776665         111112245789999999999999999999999999999987642


Q ss_pred             Cc----cC----------------------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcC-CCcEEEEEe--
Q 018416           76 AR----LF----------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNL--  120 (356)
Q Consensus        76 ~~----~~----------------------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~g~v~~v~~--  120 (356)
                      ..    ..                            ..++.+.+.+.+++.||++++++++++++.++ ++....+.+  
T Consensus       129 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~  208 (497)
T 2bry_A          129 RHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQP  208 (497)
T ss_dssp             CCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEES
T ss_pred             CCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEE
Confidence            10    00                            05666778888888999999999999998631 222234555  


Q ss_pred             C-CC--cEEecCeEEEecCCCCCch
Q 018416          121 R-DG--NRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       121 ~-~g--~~i~~D~vi~a~G~~p~~~  142 (356)
                      . +|  +++.+|.||+|+|..+...
T Consensus       209 ~~~g~~~~i~ad~VV~A~G~~S~~r  233 (497)
T 2bry_A          209 NPPAQLASYEFDVLISAAGGKFVPE  233 (497)
T ss_dssp             CCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred             CCCCCEEEEEcCEEEECCCCCcccc
Confidence            4 56  5799999999999988664

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.02  E-value=2.1e-09  Score=100.83  Aligned_cols=96  Identities=16%  Similarity=0.215  Sum_probs=78.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC---------------------Ccc-CC---------HHHHHHHH
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------ARL-FT---------PKIASYYE   88 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l---------------------~~~-~d---------~~~~~~~~   88 (356)
                      .+|+|||||+.|+.+|..|+++|.+|+++++.+.+.                     +.. .+         .++.+.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            479999999999999999999999999999987531                     100 00         67888889


Q ss_pred             HHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416           89 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        89 ~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                      +.+++.|++++++++|++++.+ ++.+..+++.++ ++.+|.||+|+|.
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~~d~vV~AtG~  130 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHF-GERLRVVARDGR-QWLARAVISATGT  130 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEE-TTEEEEEETTSC-EEEEEEEEECCCS
T ss_pred             HHHHHcCCEEEcCCEEEEEEEC-CCcEEEEEeCCC-EEEeCEEEECCCC
Confidence            9999999999999999999873 333322777776 8999999999995

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.99  E-value=1.5e-09  Score=109.00  Aligned_cols=101  Identities=18%  Similarity=0.234  Sum_probs=84.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-----------------------------------------Ccc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-----------------------------------------ARL   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-----------------------------------------~~~   78 (356)
                      .+|+|||+|+.|+.+|..|++.|.+|+|+|+++.+.                                         ...
T Consensus       108 ~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~~  187 (549)
T 3nlc_A          108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPN  187 (549)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEecccc
Confidence            579999999999999999999999999999985430                                         000


Q ss_pred             C------------------------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEec
Q 018416           79 F------------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT  128 (356)
Q Consensus        79 ~------------------------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~  128 (356)
                      +                              ..++.+.+.+.+++.|++++++++|+++.. +++.+..+++.+|+++.+
T Consensus       188 ~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~-~~~~v~gV~l~~G~~i~A  266 (549)
T 3nlc_A          188 FYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHM-EDGQITGVTLSNGEEIKS  266 (549)
T ss_dssp             CHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEE-SSSBEEEEEETTSCEEEC
T ss_pred             ccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEE-eCCEEEEEEECCCCEEEC
Confidence            0                              145667778888889999999999999987 466677789999999999


Q ss_pred             CeEEEecCCCCCc
Q 018416          129 DMVVVGIGIRPNT  141 (356)
Q Consensus       129 D~vi~a~G~~p~~  141 (356)
                      |.||+|+|..+..
T Consensus       267 d~VVlA~G~~s~~  279 (549)
T 3nlc_A          267 RHVVLAVGHSARD  279 (549)
T ss_dssp             SCEEECCCTTCHH
T ss_pred             CEEEECCCCChhh
Confidence            9999999998864

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.97  E-value=2.7e-09  Score=103.51  Aligned_cols=81  Identities=19%  Similarity=0.288  Sum_probs=63.3

Q ss_pred             HhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecC--------CCCCchhhhcc-cc--cccCcEEEecc
Q 018416           92 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG--------IRPNTSLFEGQ-LT--LEKGGIKVTGR  160 (356)
Q Consensus        92 ~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G--------~~p~~~l~~~~-l~--~~~g~I~vd~~  160 (356)
                      ++.| +++++++|++|+.++++  ..|++.+|+++.+|.||+++|        +.|+....... +.  .....++|+.+
T Consensus       215 ~~~g-~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~~~~~kv~~~  291 (431)
T 3k7m_X          215 QEIP-EIRLQTVVTGIDQSGDV--VNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGHGGQGLKILIH  291 (431)
T ss_dssp             TTCS-CEESSCCEEEEECSSSS--EEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCCCCCEEEEEEE
T ss_pred             hhCC-ceEeCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCCCcceEEEEEE
Confidence            3456 99999999999864433  357888898899999999999        88887644322 22  13456999999


Q ss_pred             cccCCCCEEEEcccc
Q 018416          161 LQSSNSSVYAVGDVA  175 (356)
Q Consensus       161 l~ts~~~VyAiGD~~  175 (356)
                      ++|+.+++|+.||+.
T Consensus       292 ~~~~~~~i~~~~d~~  306 (431)
T 3k7m_X          292 VRGAEAGIECVGDGI  306 (431)
T ss_dssp             EESCCTTEEEEBSSS
T ss_pred             ECCCCcCceEcCCCC
Confidence            999999999999874

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.92  E-value=2.7e-09  Score=99.33  Aligned_cols=100  Identities=14%  Similarity=0.191  Sum_probs=81.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC---------------Ccc---CCHHHHHHHHHHHHhCCCEEEeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------ARL---FTPKIASYYEEYYKSKGVKFVKG  101 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l---------------~~~---~d~~~~~~~~~~l~~~GV~v~~~  101 (356)
                      ++|+|||||+.|+.+|..|++.|.+|+++++.+.+.               +..   -..++...+.+.+++.|++++++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            589999999999999999999999999999987432               110   13677888888888899999999


Q ss_pred             CeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC---CCCc
Q 018416          102 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI---RPNT  141 (356)
Q Consensus       102 ~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~---~p~~  141 (356)
                      ++|++++..+++. ..+.+.+|+ +.+|.||+|+|.   .|..
T Consensus        88 ~~v~~i~~~~~~~-~~v~~~~g~-~~~d~vVlAtG~~~~~p~~  128 (332)
T 3lzw_A           88 QAVESVEKQADGV-FKLVTNEET-HYSKTVIITAGNGAFKPRK  128 (332)
T ss_dssp             CCEEEEEECTTSC-EEEEESSEE-EEEEEEEECCTTSCCEECC
T ss_pred             CEEEEEEECCCCc-EEEEECCCE-EEeCEEEECCCCCcCCCCC
Confidence            9999998744423 357777776 999999999998   6654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.92  E-value=3.9e-09  Score=98.46  Aligned_cols=102  Identities=16%  Similarity=0.204  Sum_probs=80.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC----cc------------CCc----cCCHHHHHHHHHHHHhCCCE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA----HC------------MAR----LFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~----~~------------l~~----~~d~~~~~~~~~~l~~~GV~   97 (356)
                      ..++|+|||+|+.|+.+|..|++.|.+|+|+++.+    .+            ++.    ...+++...+.+.+++.|++
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  100 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTE  100 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCE
Confidence            35789999999999999999999999999999954    11            111    11357888899999999999


Q ss_pred             EEeCCeeeEEEEcCCCcEEEEEe---CCCcEEecCeEEEecCCCCCch
Q 018416           98 FVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        98 v~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      ++.++ +++++.+ ++.+ .+.+   .++.++.+|.+|+|+|.+|...
T Consensus       101 i~~~~-v~~i~~~-~~~~-~v~~~~~~~~~~~~~d~vvlAtG~~~~~~  145 (338)
T 3itj_A          101 IITET-VSKVDLS-SKPF-KLWTEFNEDAEPVTTDAIILATGASAKRM  145 (338)
T ss_dssp             EECSC-EEEEECS-SSSE-EEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred             EEEeE-EEEEEEc-CCEE-EEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence            99998 8899763 3333 4555   3678899999999999877643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.92  E-value=6.7e-09  Score=96.11  Aligned_cols=100  Identities=10%  Similarity=0.193  Sum_probs=79.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC--Ccc--------CCc---cCCHHHHHHHHHHHHhCCCEEEeCCeeeE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHC--------MAR---LFTPKIASYYEEYYKSKGVKFVKGTVLSS  106 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~--~~~--------l~~---~~d~~~~~~~~~~l~~~GV~v~~~~~v~~  106 (356)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.  ..+        .+.   ....++.+.+.+.+++.|++++. +++++
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            58999999999999999999999999999986  111        011   11357788888889999999999 89999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          107 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       107 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +..+ ++. ..+.+.+++++.+|.+|+|+|..|...
T Consensus        95 i~~~-~~~-~~v~~~~g~~~~~d~lvlAtG~~~~~~  128 (323)
T 3f8d_A           95 IENR-GDE-FVVKTKRKGEFKADSVILGIGVKRRKL  128 (323)
T ss_dssp             EEEC---C-EEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred             EEec-CCE-EEEEECCCCEEEcCEEEECcCCCCccC
Confidence            9863 332 457778888999999999999887653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.88  E-value=1.2e-08  Score=95.39  Aligned_cols=98  Identities=12%  Similarity=0.251  Sum_probs=79.5

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC------------------CccCCHHHHHHHHHHHHhCCCEEEe
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------ARLFTPKIASYYEEYYKSKGVKFVK  100 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l------------------~~~~d~~~~~~~~~~l~~~GV~v~~  100 (356)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.                  +.....++.+.+.+.+++.+++++.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   84 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSL   84 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEe
Confidence            3589999999999999999999999999999986541                  1101256777778888888999999


Q ss_pred             CCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416          101 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus       101 ~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      +++|++++.+++  ...+.+.+|+++.+|.+|+|+|..
T Consensus        85 ~~~v~~i~~~~~--~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           85 GERAETLEREGD--LFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             SCCEEEEEEETT--EEEEEETTSCEEEEEEEEECCTTS
T ss_pred             CCEEEEEEECCC--EEEEEECCCCEEEeCEEEECCCCC
Confidence            999999986433  245777888899999999999984

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.87  E-value=1.6e-08  Score=95.83  Aligned_cols=99  Identities=14%  Similarity=0.183  Sum_probs=81.1

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------C--------c---cCCHHHHHHHHHHHHhCCCEEEe
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------A--------R---LFTPKIASYYEEYYKSKGVKFVK  100 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~--------~---~~d~~~~~~~~~~l~~~GV~v~~  100 (356)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.       +        .   ....++.+.+.+.+++.|++++.
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   93 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL   93 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence            4689999999999999999999999999999976531       1        0   01267777888888899999999


Q ss_pred             CCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416          101 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus       101 ~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      +++|++++..+++. ..+.+.+|+++.+|.+|+|+|..
T Consensus        94 ~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           94 NETVTKYTKLDDGT-FETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             SCCEEEEEECTTSC-EEEEETTSCEEEEEEEEECCTTC
T ss_pred             CCEEEEEEECCCce-EEEEECCCcEEEeeEEEEccCCC
Confidence            99999998744333 35778888899999999999984

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.87  E-value=9.7e-09  Score=93.95  Aligned_cols=99  Identities=16%  Similarity=0.265  Sum_probs=77.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc---------CCc---cCCHHHHHHHHHHHHhC-CCEEEeCCeeeE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC---------MAR---LFTPKIASYYEEYYKSK-GVKFVKGTVLSS  106 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~---------l~~---~~d~~~~~~~~~~l~~~-GV~v~~~~~v~~  106 (356)
                      .+++|||||+.|+.+|..|++.|.+|+++++.+..         ++.   ....++...+.+.+++. +++++.+ ++++
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~   81 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD   81 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence            47999999999999999999999999999975321         111   11246777788888876 7888754 8899


Q ss_pred             EEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          107 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       107 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      ++.++++  ..+.+.+|+++.+|.+|+|+|.+|..
T Consensus        82 i~~~~~~--~~v~~~~g~~~~~d~vviAtG~~~~~  114 (297)
T 3fbs_A           82 AKGSFGE--FIVEIDGGRRETAGRLILAMGVTDEL  114 (297)
T ss_dssp             EEEETTE--EEEEETTSCEEEEEEEEECCCCEEEC
T ss_pred             EEEcCCe--EEEEECCCCEEEcCEEEECCCCCCCC
Confidence            9864333  46788889999999999999988754

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.86  E-value=2.1e-08  Score=95.80  Aligned_cols=98  Identities=22%  Similarity=0.273  Sum_probs=81.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------   77 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----------------------------------------   77 (356)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+...                                         
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            468999999999999999999999999999998654210                                         


Q ss_pred             --cCC-----------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416           78 --LFT-----------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        78 --~~d-----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                        .++           .++.+.+.+.+++.||++++++++++++.  ++   .+++.+|+++.+|.||.|+|..+..
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~v  162 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSKV  162 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCHH
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHHH
Confidence              000           45567778888889999999999999975  44   5777889999999999999988754

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.86  E-value=9.5e-09  Score=100.01  Aligned_cols=99  Identities=20%  Similarity=0.241  Sum_probs=79.7

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc---------------------------c-------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------------------------L-------------   78 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~---------------------------~-------------   78 (356)
                      ..+|+|||||+.|+.+|..|+++|.+|+|+|+.+.+...                           +             
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF  106 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence            458999999999999999999999999999998754210                           0             


Q ss_pred             -----------------------CCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEec
Q 018416           79 -----------------------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  135 (356)
Q Consensus        79 -----------------------~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  135 (356)
                                             -..++.+.+.+.+++.||+++++++|+++..++++  ..+.+.+| ++.+|.||+|+
T Consensus       107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~--~~V~~~~g-~i~ad~VIlAt  183 (417)
T 3v76_A          107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASG--FRVTTSAG-TVDAASLVVAS  183 (417)
T ss_dssp             HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTE--EEEEETTE-EEEESEEEECC
T ss_pred             HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCE--EEEEECCc-EEEeeEEEECC
Confidence                                   01256677788888899999999999999864333  45777777 89999999999


Q ss_pred             CCCCC
Q 018416          136 GIRPN  140 (356)
Q Consensus       136 G~~p~  140 (356)
                      |..+.
T Consensus       184 G~~S~  188 (417)
T 3v76_A          184 GGKSI  188 (417)
T ss_dssp             CCSSC
T ss_pred             CCccC
Confidence            98764

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.83  E-value=2.2e-08  Score=100.55  Aligned_cols=102  Identities=23%  Similarity=0.235  Sum_probs=82.7

Q ss_pred             CcEEEECCchHHHHHHHHHH-HCCCcEEEEeeCCccCC--------c------------cC----------------CHH
Q 018416           40 GNAVVIGGGYIGMECAASLV-INKINVTMVFPEAHCMA--------R------------LF----------------TPK   82 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~-~~G~~Vtlv~~~~~~l~--------~------------~~----------------d~~   82 (356)
                      .+|+|||||+.|+.+|..|+ +.|.+|+|+++.+.+..        .            .+                .++
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 99999999999764320        0            01                246


Q ss_pred             HHHHHHHHHHhCCC--EEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC--CCCc
Q 018416           83 IASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI--RPNT  141 (356)
Q Consensus        83 ~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~--~p~~  141 (356)
                      +.+.+.+..++.|+  +++++++|++++.++++....|++.+|+++.+|.||+|+|.  +|..
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~  151 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINF  151 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence            77788888888999  89999999999875554455788899999999999999994  5543

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.83  E-value=3.9e-09  Score=101.63  Aligned_cols=100  Identities=18%  Similarity=0.314  Sum_probs=77.8

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--ccCCH---------HHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--RLFTP---------KIASYYEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--~~~d~---------~~~~~~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      .-+|+|||||+.|+.+|..|...+.+||++++.+.+.-  ..++.         ++.....+.+++.||+++++++++++
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~i   88 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSI   88 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEE
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEE
Confidence            35899999999999999999888999999999876421  00111         11222456678899999999999999


Q ss_pred             EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +. ++.   .+++.+|+++.+|.+|+|+|.+|...
T Consensus        89 d~-~~~---~v~~~~g~~~~yd~lvlAtG~~p~~p  119 (385)
T 3klj_A           89 DP-NNK---LVTLKSGEKIKYEKLIIASGSIANKI  119 (385)
T ss_dssp             ET-TTT---EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EC-CCC---EEEECCCCEEECCEEEEecCCCcCCC
Confidence            75 233   46788999999999999999887653

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.83  E-value=3.9e-09  Score=103.12  Aligned_cols=99  Identities=21%  Similarity=0.293  Sum_probs=78.2

Q ss_pred             CcEEEECCchHHHHHHHHHHH---CCCcEEEEeeCCccCCc----------cCCHHHHHHHHHHHHhCCCEEEeCCeeeE
Q 018416           40 GNAVVIGGGYIGMECAASLVI---NKINVTMVFPEAHCMAR----------LFTPKIASYYEEYYKSKGVKFVKGTVLSS  106 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~---~G~~Vtlv~~~~~~l~~----------~~d~~~~~~~~~~l~~~GV~v~~~~~v~~  106 (356)
                      ++|+|||||+.|+++|..|++   .|.+|||+++.+...-.          ....++...+.+.+++.||+++. .++++
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence            689999999999999999999   89999999999864211          01223444456778889999985 68889


Q ss_pred             EEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchh
Q 018416          107 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL  143 (356)
Q Consensus       107 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l  143 (356)
                      ++. ++.   .+++.+|+++.+|.+|+|+|.+|+...
T Consensus        84 id~-~~~---~V~~~~g~~i~~d~lviAtG~~~~~~~  116 (437)
T 3sx6_A           84 IDA-EAQ---NITLADGNTVHYDYLMIATGPKLAFEN  116 (437)
T ss_dssp             EET-TTT---EEEETTSCEEECSEEEECCCCEECGGG
T ss_pred             EEc-CCC---EEEECCCCEEECCEEEECCCCCcCccc
Confidence            875 222   467888999999999999999988653

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.83  E-value=1.9e-08  Score=101.24  Aligned_cols=103  Identities=21%  Similarity=0.282  Sum_probs=83.4

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--------------------ccC----------------CHH
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------------------RLF----------------TPK   82 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--------------------~~~----------------d~~   82 (356)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+..                    ..+                .++
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e  100 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE  100 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence            35799999999999999999999999999999754320                    001                246


Q ss_pred             HHHHHHHHHHhCCC--EEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecC--CCCCc
Q 018416           83 IASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG--IRPNT  141 (356)
Q Consensus        83 ~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G--~~p~~  141 (356)
                      +.+.+.+..++.|+  +++++++|++++.++++....|++.+|+++.+|.||+|+|  .+|..
T Consensus       101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~  163 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANT  163 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCC
T ss_pred             HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCC
Confidence            77888888889998  8999999999987555445578889999999999999999  55554

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.82  E-value=2.2e-08  Score=92.60  Aligned_cols=98  Identities=15%  Similarity=0.254  Sum_probs=77.4

Q ss_pred             cEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCc-----------cCCc---cCC-HHHHHHHHHHHHhCCCEEEeCCee
Q 018416           41 NAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-----------CMAR---LFT-PKIASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~-----------~l~~---~~d-~~~~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      +++|||+|+.|+.+|..|++.|. +|+++++.+.           ..+.   .++ .++.+.+.+.+++.|++++. .++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            69999999999999999999999 9999998531           0111   122 56777888888999999998 788


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      ++++.++ +. ..+.+.+|+++.+|.+|+|+|.+|..
T Consensus        82 ~~i~~~~-~~-~~v~~~~g~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           82 QRVSKKD-SH-FVILAEDGKTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             EEEEEET-TE-EEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEcC-CE-EEEEEcCCCEEECCEEEECCCCCCCC
Confidence            8887633 32 34667888899999999999987654

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.82  E-value=7e-08  Score=91.63  Aligned_cols=98  Identities=16%  Similarity=0.206  Sum_probs=72.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------------------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-------------------------------------------   77 (356)
                      .|+|||||+.|+-+|..|++.|++|+|+|+.+.+...                                           
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII   85 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence            5999999999999999999999999999987543110                                           


Q ss_pred             ------------cCC-HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe-CCC--cEEecCeEEEecCCCC
Q 018416           78 ------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDG--NRLPTDMVVVGIGIRP  139 (356)
Q Consensus        78 ------------~~d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~-~~g--~~i~~D~vi~a~G~~p  139 (356)
                                  .++ ..+...+.+..++.|++++.+++++.+.. +++.+..+.. .++  .++.+|+||-|.|...
T Consensus        86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~-~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A           86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIK-ENGKVAGAKIRHNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeee-ccceeeeeeecccccceEEEEeEEEeCCcccc
Confidence                        001 23445566677788999999999999876 4555544433 233  3688999999999654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.82  E-value=1.7e-08  Score=93.27  Aligned_cols=101  Identities=14%  Similarity=0.178  Sum_probs=79.2

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC--ccC-----------CccCCHHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA--HCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~--~~l-----------~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      +++|||+|+.|+.+|..|++.|.+|+++++..  .+.           +....+++.+.+.+.+++.|++++.+++++.+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            69999999999999999999999999997631  110           00012577788888899999999999999999


Q ss_pred             EEcCC-CcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          108 DVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       108 ~~~~~-g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      +.+.+ +....+.+.+|+++.+|.+|+|+|.+|..
T Consensus        83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            75322 22346778888899999999999987754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.79  E-value=5.8e-08  Score=91.87  Aligned_cols=98  Identities=16%  Similarity=0.214  Sum_probs=75.8

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC------------ccCCc----------------------------c
Q 018416           40 GNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA------------HCMAR----------------------------L   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~------------~~l~~----------------------------~   78 (356)
                      .+|+|||||+.|+.+|..|++.|. +|+++++.+            +++..                            .
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   84 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH   84 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence            479999999999999999999999 999999875            00000                            0


Q ss_pred             CC-HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           79 FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        79 ~d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      .+ .++...+.+.+++.|++++.++.|++++.++++  ..+.+.++ ++.+|.||+|+|..+.
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAY--YTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe--EEEEeCCC-EEEeCEEEECCCCCCc
Confidence            01 345666777788899999999999999874333  34666666 6999999999998754

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.79  E-value=1.1e-07  Score=94.63  Aligned_cols=195  Identities=11%  Similarity=0.070  Sum_probs=105.4

Q ss_pred             CccCCCCCCCCCCeEEeCCHHHHHHHHHHH-hcCCCCcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCcc---
Q 018416            5 LEEFGLSGSDAENVCYLRDLADANRLVNVM-KSCSGGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARL---   78 (356)
Q Consensus         5 p~~~~ipG~~~~~v~~l~~~~da~~i~~~l-~~~~~~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~~---   78 (356)
                      |+.++.++. .+.+++-..+.+...  ... ....+|+|+|||+|.+|+|++..|++.  +.+|+++.|++.+.+..   
T Consensus       214 P~iP~~~~~-~g~v~Hss~y~~~~~--~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~~p~~~s~  290 (501)
T 4b63_A          214 AKMPSGLPQ-DPRIIHSSKYCTTLP--ALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAMRPSDDSP  290 (501)
T ss_dssp             ECCCTTSCC-CTTEEEGGGHHHHHH--HHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSCCBCCCCT
T ss_pred             CCCCCCCCC-Ccceeeccccccchh--hccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCccccccccc
Confidence            444444433 245665544433221  111 123689999999999999999999875  78999999987654321   


Q ss_pred             -----CCHH-------------------------------HHHHHHHHH-Hh---------CCCEEEeCCeeeEEEEcCC
Q 018416           79 -----FTPK-------------------------------IASYYEEYY-KS---------KGVKFVKGTVLSSFDVDSN  112 (356)
Q Consensus        79 -----~d~~-------------------------------~~~~~~~~l-~~---------~GV~v~~~~~v~~i~~~~~  112 (356)
                           ++++                               ..+.+.+.+ ++         ....+..+..+..+.....
T Consensus       291 ~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~  370 (501)
T 4b63_A          291 FVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILPERKITRVEHHGP  370 (501)
T ss_dssp             TGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEECSEEEEEEECCSS
T ss_pred             cchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccceeecCCcceeeeeecCC
Confidence                 1111                               111111111 10         1224555555655543222


Q ss_pred             -CcE-----------EEEEeCCCcEEecCeEEEecCCCCCch-hhhcc---ccc-ccCcEEEeccccc--------CCCC
Q 018416          113 -GKV-----------VAVNLRDGNRLPTDMVVVGIGIRPNTS-LFEGQ---LTL-EKGGIKVTGRLQS--------SNSS  167 (356)
Q Consensus       113 -g~v-----------~~v~~~~g~~i~~D~vi~a~G~~p~~~-l~~~~---l~~-~~g~I~vd~~l~t--------s~~~  167 (356)
                       +.+           ..+.+.+|+++++|.||+|||++|+.. ++...   +.. .+|...|+..++.        ..++
T Consensus       371 ~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~~~~~~~~~~~~~  450 (501)
T 4b63_A          371 QSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAG  450 (501)
T ss_dssp             SSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBBCCCTTTBCTTCE
T ss_pred             CCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEEeecCCccCCCce
Confidence             211           124456889999999999999998864 22221   222 4577778765442        2467


Q ss_pred             EEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416          168 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       168 VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                      ||+-|-+-.....  +.+   -+--.|.+.|++ ++.|+|+
T Consensus       451 i~~qg~~~~thG~--~~~---~Ls~~a~R~~~I-~~~l~g~  485 (501)
T 4b63_A          451 IWLQGCNERTHGL--SDS---LLSVLAVRGGEM-VQSIFGE  485 (501)
T ss_dssp             EEECSCCHHHHCT--TTT---SSTTHHHHHHHH-HHHHHHH
T ss_pred             EEecCCCcccCCc--chh---hHHHHHHHHHHH-HHHHhcc
Confidence            9999954322111  111   111246666664 4556664

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.79  E-value=3.3e-08  Score=91.53  Aligned_cols=100  Identities=11%  Similarity=0.141  Sum_probs=72.0

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc----------C--CccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEE
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC----------M--ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFD  108 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~----------l--~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~  108 (356)
                      .|+|||+|+.|+.+|..|+++|.+|+++++...-          .  +....+++.+...+.+.+.+...+....+..+.
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT   87 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence            6999999999999999999999999999986321          0  111234566666666666554444445555665


Q ss_pred             EcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          109 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       109 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      ..+++. ..+.+.+|+++.+|.+|+|||.+|..
T Consensus        88 ~~~~~~-~~v~~~~g~~~~a~~liiATGs~p~~  119 (304)
T 4fk1_A           88 KQSTGL-FEIVTKDHTKYLAERVLLATGMQEEF  119 (304)
T ss_dssp             ECTTSC-EEEEETTCCEEEEEEEEECCCCEEEC
T ss_pred             ecCCCc-EEEEECCCCEEEeCEEEEccCCcccc
Confidence            534443 46788899999999999999988754

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.78  E-value=4e-08  Score=95.04  Aligned_cols=100  Identities=16%  Similarity=0.184  Sum_probs=79.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--------------------cc---------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------------------RL---------------------   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--------------------~~---------------------   78 (356)
                      .+|+|||||+.|+.+|..|+++|.+|+|+|+.+.+..                    .+                     
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            4799999999999999999999999999999875410                    00                     


Q ss_pred             ----------------------CCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcC---CCcEEEEEeCCCcEEecCeEEE
Q 018416           79 ----------------------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS---NGKVVAVNLRDGNRLPTDMVVV  133 (356)
Q Consensus        79 ----------------------~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~---~g~v~~v~~~~g~~i~~D~vi~  133 (356)
                                            -..++.+.+.+.+++.||++++++.++++..++   ++. ..+++.++ ++.+|.||+
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence                                  124555677888888999999999999998631   333 35666666 799999999


Q ss_pred             ecCCCCCc
Q 018416          134 GIGIRPNT  141 (356)
Q Consensus       134 a~G~~p~~  141 (356)
                      |+|..+..
T Consensus       163 AtG~~s~p  170 (401)
T 2gqf_A          163 ATGGLSMP  170 (401)
T ss_dssp             CCCCSSCG
T ss_pred             CCCCccCC
Confidence            99998854

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.77  E-value=3.5e-08  Score=91.95  Aligned_cols=101  Identities=14%  Similarity=0.147  Sum_probs=77.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc-----------cCCcc----CCHHHHHHHHHHHHhCCCEEEeCCee
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-----------CMARL----FTPKIASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~-----------~l~~~----~d~~~~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...           ..+.+    ...++.+.+.+.+++.|++++. .++
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v   87 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV   87 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence            5799999999999999999999999999999721           01110    1246777788888999999997 588


Q ss_pred             eEEEEcC-CCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          105 SSFDVDS-NGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       105 ~~i~~~~-~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      ++++... ++....+.+.+|+++.+|.+|+|+|.+|..
T Consensus        88 ~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~  125 (325)
T 2q7v_A           88 QGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK  125 (325)
T ss_dssp             EEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred             EEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            8887631 221123556788899999999999987754

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.77  E-value=2.2e-08  Score=93.56  Aligned_cols=98  Identities=12%  Similarity=0.196  Sum_probs=76.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEee----CCcc------------CCc----cCCHHHHHHHHHHHHhCCCEEE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFP----EAHC------------MAR----LFTPKIASYYEEYYKSKGVKFV   99 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~----~~~~------------l~~----~~d~~~~~~~~~~l~~~GV~v~   99 (356)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++    ...+            .+.    ....++.+.+.+.+++.|++++
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~   88 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF   88 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence            5799999999999999999999999999998    2211            111    1124677788888899999999


Q ss_pred             eCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          100 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       100 ~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      .++ ++.++..+ +. ..+.+ +++++.+|.+|+|+|.+|..
T Consensus        89 ~~~-v~~i~~~~-~~-~~v~~-~~~~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           89 TET-VTKVDFSS-KP-FKLFT-DSKAILADAVILAIGAVAKR  126 (333)
T ss_dssp             CCC-CCEEECSS-SS-EEEEC-SSEEEEEEEEEECCCEEECC
T ss_pred             EeE-EEEEEEcC-CE-EEEEE-CCcEEEcCEEEECCCCCcCC
Confidence            987 88887533 32 34555 77889999999999987654

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.77  E-value=1.2e-09  Score=102.63  Aligned_cols=41  Identities=12%  Similarity=0.303  Sum_probs=34.2

Q ss_pred             HhcCCCCcEEEECCchHHHHHHHHHHH--CCCcEEEEeeCCcc
Q 018416           34 MKSCSGGNAVVIGGGYIGMECAASLVI--NKINVTMVFPEAHC   74 (356)
Q Consensus        34 l~~~~~~~vvVvGgG~iGlE~A~~L~~--~G~~Vtlv~~~~~~   74 (356)
                      +.......|+|||+|+.|+.+|..|++  .|.+|+|+|+.+.+
T Consensus        60 ~~~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           60 LDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             HHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             hhhccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            333345689999999999999999974  59999999998764

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.77  E-value=5e-08  Score=95.63  Aligned_cols=100  Identities=26%  Similarity=0.350  Sum_probs=80.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------------------c-----------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------------------R-----------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------------------~-----------------------   77 (356)
                      .+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+..                   .                       
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED  106 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence            5799999999999999999999999999998764310                   0                       


Q ss_pred             -------------------cC-----CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEE
Q 018416           78 -------------------LF-----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  133 (356)
Q Consensus        78 -------------------~~-----d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  133 (356)
                                         .+     ...+.+.+.+.+++.||+++++++|+++.. +++.+..+++.+|+++.+|.||+
T Consensus       107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~-~~~~v~~V~~~~G~~i~Ad~VVl  185 (447)
T 2i0z_A          107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVI  185 (447)
T ss_dssp             HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEE
T ss_pred             HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEe-cCCcEEEEEECCCCEEECCEEEE
Confidence                               00     134455677778889999999999999986 45666678888888899999999


Q ss_pred             ecCCCCC
Q 018416          134 GIGIRPN  140 (356)
Q Consensus       134 a~G~~p~  140 (356)
                      |+|..+.
T Consensus       186 AtGg~s~  192 (447)
T 2i0z_A          186 AVGGKSV  192 (447)
T ss_dssp             CCCCSSS
T ss_pred             CCCCCcC
Confidence            9998773

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.77  E-value=5.8e-09  Score=100.45  Aligned_cols=100  Identities=23%  Similarity=0.325  Sum_probs=73.6

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccCCccCCHHHH---------HHHHHHHHhCCCEEEeCCeeeEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMARLFTPKIA---------SYYEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l~~~~d~~~~---------~~~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      +|||||||||+.|+.+|..|++.+  .+||||++.+......+...+.         ..-.+.+.++||+++.+ ++++|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence            799999999999999999999876  5899999987532211111111         11124566789999865 68888


Q ss_pred             EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchh
Q 018416          108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL  143 (356)
Q Consensus       108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l  143 (356)
                      +.  +.+  .+.+.+|+++++|.+++|+|.+|+..-
T Consensus        81 d~--~~~--~v~~~~g~~i~yd~LviAtG~~~~~~~  112 (401)
T 3vrd_B           81 DP--DKK--LVKTAGGAEFAYDRCVVAPGIDLLYDK  112 (401)
T ss_dssp             ET--TTT--EEEETTSCEEECSEEEECCCEEECGGG
T ss_pred             Ec--cCc--EEEecccceeecceeeeccCCccccCC
Confidence            75  232  467889999999999999999877643

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.77  E-value=2.4e-09  Score=104.52  Aligned_cols=96  Identities=20%  Similarity=0.271  Sum_probs=72.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccCCccC---------C-HHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416           40 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMARLF---------T-PKIASYYEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l~~~~---------d-~~~~~~~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      |+|||||||+.|+.+|..|++++  .+||||++.+...-...         + .++...+.+.+++.||+++.+ ++++|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I   81 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI   81 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence            78999999999999999999876  78999999886421101         1 111122345567789999876 68899


Q ss_pred             EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416          108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus       108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      +.  +.+  .|++++|+++++|.+|+|+|.++.
T Consensus        82 d~--~~~--~V~~~~g~~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           82 DP--DAN--TVTTQSGKKIEYDYLVIATGPKLV  110 (430)
T ss_dssp             ET--TTT--EEEETTCCEEECSEEEECCCCEEE
T ss_pred             EC--CCC--EEEECCCCEEECCEEEEeCCCCcc
Confidence            75  232  477899999999999999998653

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.77  E-value=2.7e-08  Score=100.54  Aligned_cols=134  Identities=16%  Similarity=0.158  Sum_probs=96.1

Q ss_pred             CCCCCCCCCCeEEeCCHHHHHHHHHHHhcC--CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-------
Q 018416            8 FGLSGSDAENVCYLRDLADANRLVNVMKSC--SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-------   78 (356)
Q Consensus         8 ~~ipG~~~~~v~~l~~~~da~~i~~~l~~~--~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-------   78 (356)
                      +++|+.+.+++..++...+...|.+.+...  ..-.|+|||+|..|+.+|..|++.|.+|+|+++.+.+....       
T Consensus        88 ~~~p~~~~~~~~~w~~~~~~~~i~~~i~~~~~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~  167 (566)
T 1qo8_A           88 KPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGM  167 (566)
T ss_dssp             CCCTTTTSCCCCCSCCCCCHHHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCE
T ss_pred             CCCCCCCCCCCcccccccccHHHHHhhccCCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCcee
Confidence            567777776677666644555554444311  12369999999999999999999999999999876432100       


Q ss_pred             -------------------------------C------------------------------------------------
Q 018416           79 -------------------------------F------------------------------------------------   79 (356)
Q Consensus        79 -------------------------------~------------------------------------------------   79 (356)
                                                     .                                                
T Consensus       168 ~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~  247 (566)
T 1qo8_A          168 NAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKS  247 (566)
T ss_dssp             ECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSC
T ss_pred             EccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCC
Confidence                                           0                                                


Q ss_pred             -CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC--CCc--EEecCeEEEecCCCCCc
Q 018416           80 -TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        80 -d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~vi~a~G~~p~~  141 (356)
                       ...+...+.+.+++.||++++++.++++..++++++..+.+.  +|+  ++.+|.||+|+|.....
T Consensus       248 ~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~  314 (566)
T 1qo8_A          248 SGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMN  314 (566)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTC
T ss_pred             CHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccC
Confidence             123445566777888999999999999987433777666654  675  68999999999966543

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.76  E-value=5.6e-08  Score=95.81  Aligned_cols=103  Identities=16%  Similarity=0.246  Sum_probs=77.8

Q ss_pred             CcEEEECCchHHHHHHHHHHH---CCCc---EEEEeeCCccCCc----------------------------------c-
Q 018416           40 GNAVVIGGGYIGMECAASLVI---NKIN---VTMVFPEAHCMAR----------------------------------L-   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~---~G~~---Vtlv~~~~~~l~~----------------------------------~-   78 (356)
                      ++|+|||||+.|+.+|..|++   .|.+   |+++++.+.+...                                  + 
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            689999999999999999999   9999   9999998653100                                  0 


Q ss_pred             -C---------------CHHHHHHHHHHHHhCCCE--EEeCCeeeEEEEcCCCcEEEEEeCC---C--cEEecCeEEEec
Q 018416           79 -F---------------TPKIASYYEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGI  135 (356)
Q Consensus        79 -~---------------d~~~~~~~~~~l~~~GV~--v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~  135 (356)
                       +               ..++.+.+.+.+++.|++  ++++++|++++..+++....|++.+   |  .++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence             0               145667777778888998  9999999999864432122444443   4  578999999999


Q ss_pred             C--CCCCch
Q 018416          136 G--IRPNTS  142 (356)
Q Consensus       136 G--~~p~~~  142 (356)
                      |  .+|+..
T Consensus       163 G~~s~p~~p  171 (464)
T 2xve_A          163 GHFSTPYVP  171 (464)
T ss_dssp             CSSSSBCCC
T ss_pred             CCCCCCccC
Confidence            9  677654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.74  E-value=4.9e-08  Score=93.80  Aligned_cols=101  Identities=22%  Similarity=0.176  Sum_probs=79.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------------------------------------------   76 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------------------------------------------   76 (356)
                      .+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+..                                           
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            4799999999999999999999999999998764300                                           


Q ss_pred             --c-------------cC-CHHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEE-EEEeCCCcEEecCeEEEecCCC
Q 018416           77 --R-------------LF-TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVV-AVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        77 --~-------------~~-d~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~-~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                        .             .+ ..++.+.+.+.+++. |+++++++++++++.++++ +. .+++.+|+++.+|.||.|.|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~g~v~~~~g~~~~ad~vV~AdG~~  165 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERH-AIDQVRLNDGRVLRPRVVVGADGIA  165 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTS-CEEEEEETTSCEEEEEEEEECCCTT
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCc-eEEEEEECCCCEEECCEEEECCCCC
Confidence              0             00 124556667777777 9999999999999874443 32 5778899899999999999987


Q ss_pred             CCc
Q 018416          139 PNT  141 (356)
Q Consensus       139 p~~  141 (356)
                      +..
T Consensus       166 s~v  168 (399)
T 2x3n_A          166 SYV  168 (399)
T ss_dssp             CHH
T ss_pred             hHH
Confidence            653

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.74  E-value=8e-09  Score=99.85  Aligned_cols=98  Identities=22%  Similarity=0.332  Sum_probs=75.0

Q ss_pred             CcEEEECCchHHHHHHHHHHH---CCCcEEEEeeCCccCCc----------cCCHHHHHHHHHHHHhCCCEEEeCCeeeE
Q 018416           40 GNAVVIGGGYIGMECAASLVI---NKINVTMVFPEAHCMAR----------LFTPKIASYYEEYYKSKGVKFVKGTVLSS  106 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~---~G~~Vtlv~~~~~~l~~----------~~d~~~~~~~~~~l~~~GV~v~~~~~v~~  106 (356)
                      ++|+|||||+.|+++|..|++   .|.+|||+++.+.+...          ....++...+.+.+++.||+++.+ ++++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            579999999999999999999   89999999998764210          012234445667778889999988 8888


Q ss_pred             EEEcCCCcEEEEEeCCCc----EEecCeEEEecCCCCCch
Q 018416          107 FDVDSNGKVVAVNLRDGN----RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       107 i~~~~~g~v~~v~~~~g~----~i~~D~vi~a~G~~p~~~  142 (356)
                      ++. ++.   .+++.+++    ++++|.||+|+|.+|+..
T Consensus        81 i~~-~~~---~V~~~~g~~~~~~~~~d~lViAtG~~~~~~  116 (409)
T 3h8l_A           81 IDA-KSS---MVYYTKPDGSMAEEEYDYVIVGIGAHLATE  116 (409)
T ss_dssp             EET-TTT---EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred             EeC-CCC---EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence            875 222   34455554    399999999999988764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.74  E-value=3.6e-08  Score=99.15  Aligned_cols=102  Identities=17%  Similarity=0.182  Sum_probs=80.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------------------------C---------cc--CCHHH
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------------------------A---------RL--FTPKI   83 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------------------------~---------~~--~d~~~   83 (356)
                      .+|+|||||+.|+.+|..|++.|.+|+|+++.+.+.                         +         ..  -.+++
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            579999999999999999999999999999986431                         0         00  13677


Q ss_pred             HHHHHHHHHhCCC--EEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecC--CCCCc
Q 018416           84 ASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG--IRPNT  141 (356)
Q Consensus        84 ~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G--~~p~~  141 (356)
                      .+.+.+..++.|+  +++++++|++++.++++....|++.+|+++.+|.||+|+|  .+|+.
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~  151 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM  151 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence            7888888888888  7899999999976444444568888999999999999999  55554

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.72  E-value=5.4e-08  Score=93.61  Aligned_cols=102  Identities=17%  Similarity=0.247  Sum_probs=76.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----cCCHHHHHH--------------------------
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----LFTPKIASY--------------------------   86 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----~~d~~~~~~--------------------------   86 (356)
                      ...+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+...     .+.+...+.                          
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g   83 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   83 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCC
Confidence            3568999999999999999999999999999998764211     123332222                          


Q ss_pred             -----------------HHHHHHh--CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416           87 -----------------YEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        87 -----------------~~~~l~~--~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                                       +.+.|.+  .|+++++++++++++.++++  ..+++.+|+++.+|.||.|.|..+..
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~v  155 (397)
T 2vou_A           84 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASVV  155 (397)
T ss_dssp             CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCHH
T ss_pred             CccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE--EEEEECCCCEEECCEEEECCCcchhH
Confidence                             2222222  38999999999999874444  35788899999999999999987653

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.72  E-value=8.4e-08  Score=95.91  Aligned_cols=104  Identities=13%  Similarity=0.186  Sum_probs=81.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC--ccC-----------CccCCHHHHHHHHHHHHhCCCEEEeCCee
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA--HCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~--~~l-----------~~~~d~~~~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      ...+|+|||||+.|+.+|..|++.|.+|+++++..  .+.           +....+++...+.+.+++.||+++.++++
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v  290 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSA  290 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCE
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEE
Confidence            34579999999999999999999999999998631  111           11123577888888999999999999999


Q ss_pred             eEEEEcCC-CcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          105 SSFDVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       105 ~~i~~~~~-g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      +++..+.+ +....+.+.+|+++.+|.+|+|+|.+|..
T Consensus       291 ~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~  328 (521)
T 1hyu_A          291 SKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN  328 (521)
T ss_dssp             EEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            99974221 22346778889999999999999987653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.70  E-value=1.3e-08  Score=97.38  Aligned_cols=99  Identities=22%  Similarity=0.366  Sum_probs=73.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--c--------cCCH-HHHHHHHHHHHhCCCEEEeCCeeeE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--R--------LFTP-KIASYYEEYYKSKGVKFVKGTVLSS  106 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--~--------~~d~-~~~~~~~~~l~~~GV~v~~~~~v~~  106 (356)
                      .+.+++|||||+.|+.+|..|+++| +|+++++.+.+..  .        .++. ++.....+.+++.||+++.++.++.
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~   85 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   85 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence            5789999999999999999999999 9999999875321  0        0111 1112234567788999999999999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          107 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       107 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      ++.  +..  .|. .+|+++++|.+|+|+|.+|+..
T Consensus        86 id~--~~~--~V~-~~g~~~~~d~lViATGs~p~~p  116 (367)
T 1xhc_A           86 IDR--GRK--VVI-TEKGEVPYDTLVLATGARAREP  116 (367)
T ss_dssp             EET--TTT--EEE-ESSCEEECSEEEECCCEEECCC
T ss_pred             EEC--CCC--EEE-ECCcEEECCEEEECCCCCCCCC
Confidence            875  232  244 5778999999999999888653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.70  E-value=6.7e-08  Score=89.56  Aligned_cols=98  Identities=12%  Similarity=0.196  Sum_probs=76.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc-----------cCCc----cCCHHHHHHHHHHHHhCCCEEEeCCee
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-----------CMAR----LFTPKIASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~-----------~l~~----~~d~~~~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...           ..+.    ...+++.+.+.+.+++.|++++.++ +
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v   84 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I   84 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence            5799999999999999999999999999996420           0111    1235777888888899999999886 8


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      +.++.. ++.+ .+ +.+++++.+|.+++|+|.+|..
T Consensus        85 ~~i~~~-~~~~-~v-~~~~~~~~~~~lv~AtG~~~~~  118 (320)
T 1trb_A           85 NKVDLQ-NRPF-RL-NGDNGEYTCDALIIATGASARY  118 (320)
T ss_dssp             EEEECS-SSSE-EE-EESSCEEEEEEEEECCCEEECC
T ss_pred             eEEEec-CCEE-EE-EeCCCEEEcCEEEECCCCCcCC
Confidence            888753 3332 34 5678899999999999987754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.69  E-value=2.5e-08  Score=96.39  Aligned_cols=97  Identities=19%  Similarity=0.374  Sum_probs=74.8

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCCccC------C-ccC-----CHHHHHHHHHHHHhCCCEEEeCCeee
Q 018416           40 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCM------A-RLF-----TPKIASYYEEYYKSKGVKFVKGTVLS  105 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~~~l------~-~~~-----d~~~~~~~~~~l~~~GV~v~~~~~v~  105 (356)
                      ++++|||+|+.|+.+|..|++.|.  +||++++.+.+.      + ..+     ..++.....+.+++.+|+++. ++++
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~   80 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV   80 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence            689999999999999999999998  899999987421      1 000     111222345667889999999 9999


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          106 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       106 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      +++.  +.+  .+.+.+|+++.+|.+++|+|.+|..
T Consensus        81 ~id~--~~~--~v~~~~g~~~~~d~lvlAtG~~p~~  112 (404)
T 3fg2_P           81 SIDR--EGR--KLLLASGTAIEYGHLVLATGARNRM  112 (404)
T ss_dssp             EEET--TTT--EEEESSSCEEECSEEEECCCEEECC
T ss_pred             EEEC--CCC--EEEECCCCEEECCEEEEeeCCCccC
Confidence            9975  232  4677899999999999999987654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.69  E-value=4.8e-08  Score=90.05  Aligned_cols=99  Identities=13%  Similarity=0.119  Sum_probs=75.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEE-EeeCCcc------------CCc----cCCHHHHHHHHHHHHhCCCEEEeC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTM-VFPEAHC------------MAR----LFTPKIASYYEEYYKSKGVKFVKG  101 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtl-v~~~~~~------------l~~----~~d~~~~~~~~~~l~~~GV~v~~~  101 (356)
                      .++|+|||+|+.|+.+|..|++.|.+|++ +++. .+            .+.    ....++...+.+.+++.|++++.+
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV   82 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE
Confidence            46899999999999999999999999999 9973 22            111    012578888889999999999988


Q ss_pred             CeeeEEEEcCC-CcEEEE-EeCCCcEEecCeEEEecCCCCCch
Q 018416          102 TVLSSFDVDSN-GKVVAV-NLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       102 ~~v~~i~~~~~-g~v~~v-~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                       +++++ .+++ +.. .+ ...++ ++.+|.+++|+|.+|+..
T Consensus        83 -~v~~i-~~~~~~~~-~v~~~~~~-~~~~d~lvlAtG~~~~~~  121 (315)
T 3r9u_A           83 -GVEQI-LKNSDGSF-TIKLEGGK-TELAKAVIVCTGSAPKKA  121 (315)
T ss_dssp             -CEEEE-EECTTSCE-EEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred             -EEEEE-ecCCCCcE-EEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence             78888 4331 322 32 22344 899999999999877653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.68  E-value=6.3e-08  Score=93.75  Aligned_cols=99  Identities=21%  Similarity=0.416  Sum_probs=75.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCc--EEEEeeCCccCCc--cCCHHHH---------HHHHHHHHhCCCEEEeCCeeeE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKIN--VTMVFPEAHCMAR--LFTPKIA---------SYYEEYYKSKGVKFVKGTVLSS  106 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~--Vtlv~~~~~~l~~--~~d~~~~---------~~~~~~l~~~GV~v~~~~~v~~  106 (356)
                      ++++|||+|+.|+.+|..|+++|.+  |+++++.+.+.-.  .+.....         ....+.+++.||+++++++++.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   82 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA   82 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence            5899999999999999999999987  9999998763210  0111111         1123457788999999999999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          107 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       107 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      ++.  +.+  .+.+.+|+++.+|.+++|+|.+|...
T Consensus        83 id~--~~~--~v~~~~g~~~~~d~lvlAtG~~p~~~  114 (410)
T 3ef6_A           83 LDV--QTR--TISLDDGTTLSADAIVIATGSRARTM  114 (410)
T ss_dssp             EET--TTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EEC--CCC--EEEECCCCEEECCEEEEccCCcccCC
Confidence            975  222  46778999999999999999887643

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.68  E-value=7.1e-08  Score=94.41  Aligned_cols=102  Identities=20%  Similarity=0.198  Sum_probs=76.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCCccCCcc-------------------------------------
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL-------------------------------------   78 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~~~l~~~-------------------------------------   78 (356)
                      ..++|+|||||+.|+.+|..|++.|.  +|+++++.+.+....                                     
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            35789999999999999999999999  999999875431000                                     


Q ss_pred             --------------C--------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC---Cc---
Q 018416           79 --------------F--------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN---  124 (356)
Q Consensus        79 --------------~--------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g~---  124 (356)
                                    +              ..++.+.+.+..++.++.++++++|++++..+ +. ..|++.+   |+   
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~-~~-~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD-GS-WVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET-TE-EEEEEEESSTTCCEE
T ss_pred             hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCC-Ce-EEEEEeecCCCCeeE
Confidence                          0              12455666676777788899999999998743 32 2344444   66   


Q ss_pred             EEecCeEEEecCC--CCCc
Q 018416          125 RLPTDMVVVGIGI--RPNT  141 (356)
Q Consensus       125 ~i~~D~vi~a~G~--~p~~  141 (356)
                      ++.+|.||+|+|.  .|+.
T Consensus       163 ~~~~d~VVvAtG~~s~p~~  181 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYI  181 (447)
T ss_dssp             EEEESEEEECCCSSSSBCB
T ss_pred             EEEeCEEEECCCCCCCCCC
Confidence            7999999999998  6654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.68  E-value=7e-08  Score=93.15  Aligned_cols=100  Identities=15%  Similarity=0.182  Sum_probs=79.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC--------Cc----------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------AR----------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l--------~~----------------------------------   77 (356)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+..-        +.                                  
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   85 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA   85 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence            479999999999999999999999999999975210        00                                  


Q ss_pred             ----------------cCC-HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCC
Q 018416           78 ----------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIR  138 (356)
Q Consensus        78 ----------------~~d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~  138 (356)
                                      .++ ..+...+.+.+++.|++++.+++|++++.++++....+.+.+|+  ++.+|.||.|+|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~  165 (421)
T 3nix_A           86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYG  165 (421)
T ss_dssp             EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGG
T ss_pred             EEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCc
Confidence                            001 24456667777778999999999999987555555567778887  79999999999977


Q ss_pred             C
Q 018416          139 P  139 (356)
Q Consensus       139 p  139 (356)
                      +
T Consensus       166 s  166 (421)
T 3nix_A          166 R  166 (421)
T ss_dssp             C
T ss_pred             h
Confidence            6

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.68  E-value=9.8e-08  Score=88.66  Aligned_cols=99  Identities=11%  Similarity=0.176  Sum_probs=76.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc-----------cCCc---cCCHHHHHHHHHHHHhCCCEEEeCCee
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-----------CMAR---LFTPKIASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~-----------~l~~---~~d~~~~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++...           -.+.   ....++.+.+.+.+++.|++++. .++
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v   94 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEV   94 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCE
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeE
Confidence            35799999999999999999999999999998521           0111   11256777788888899999988 688


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      ++++..+ +. ..+.+ ++.++.+|.+|+|+|.+|..
T Consensus        95 ~~i~~~~-~~-~~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A           95 RSIKKTQ-GG-FDIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             EEEEEET-TE-EEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             EEEEEeC-CE-EEEEE-CCCEEEeCEEEECCCCCccc
Confidence            8887532 32 23555 66789999999999987654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.67  E-value=7.7e-08  Score=90.14  Aligned_cols=99  Identities=14%  Similarity=0.164  Sum_probs=77.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc---c--------CCcc----CCHHHHHHHHHHHHhCCCEEEeCCe
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH---C--------MARL----FTPKIASYYEEYYKSKGVKFVKGTV  103 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~---~--------l~~~----~d~~~~~~~~~~l~~~GV~v~~~~~  103 (356)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++...   +        .+.+    ..+++.+.+.+.+++.|++++.++ 
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-   92 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED-   92 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence            46899999999999999999999999999996411   0        1111    125677788888889999999987 


Q ss_pred             eeEEEEcCCCcEEEE-EeCCCcEEecCeEEEecCCCCCc
Q 018416          104 LSSFDVDSNGKVVAV-NLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       104 v~~i~~~~~g~v~~v-~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      +++++. ++.  ..+ .+.+|+++.+|.+|+|+|.+|..
T Consensus        93 v~~i~~-~~~--~~v~~~~~g~~~~~d~lviAtG~~~~~  128 (335)
T 2a87_A           93 VESVSL-HGP--LKSVVTADGQTHRARAVILAMGAAARY  128 (335)
T ss_dssp             EEEEEC-SSS--SEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEe-CCc--EEEEEeCCCCEEEeCEEEECCCCCccC
Confidence            888865 222  234 67788899999999999987754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.67  E-value=9.9e-08  Score=88.18  Aligned_cols=99  Identities=14%  Similarity=0.178  Sum_probs=75.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc----c----C--------Cc----cCCHHHHHHHHHHHHhCCCEEE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH----C----M--------AR----LFTPKIASYYEEYYKSKGVKFV   99 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~----~----l--------~~----~~d~~~~~~~~~~l~~~GV~v~   99 (356)
                      ..|+|||+|+.|+.+|..|+++|.+|+++++.+.    +    .        +.    ...+++.+.+.+.+++.++++.
T Consensus         5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~   84 (314)
T 4a5l_A            5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTII   84 (314)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEE
Confidence            4699999999999999999999999999998642    0    0        11    1125778888888999999988


Q ss_pred             eCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          100 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       100 ~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      ... +.......+.  ..+.+.++.++.+|.+|+|+|.+|..
T Consensus        85 ~~~-v~~~~~~~~~--~~~~~~~~~~~~~~~liiATG~~~~~  123 (314)
T 4a5l_A           85 TET-IDHVDFSTQP--FKLFTEEGKEVLTKSVIIATGATAKR  123 (314)
T ss_dssp             CCC-EEEEECSSSS--EEEEETTCCEEEEEEEEECCCEEECC
T ss_pred             EeE-EEEeecCCCc--eEEEECCCeEEEEeEEEEcccccccc
Confidence            654 4454432222  45667888999999999999987754

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.66  E-value=5e-08  Score=95.15  Aligned_cols=100  Identities=23%  Similarity=0.360  Sum_probs=76.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCCccCC------c-cCC-----HHHHHHHHHHHHhCCCEEEeCCee
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMA------R-LFT-----PKIASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~~~l~------~-~~d-----~~~~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      .++++|||+|+.|+.+|..|+++|.  +|+++++.+.+.-      . ++.     .++.....+.+++.||+++.++.+
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            4689999999999999999999998  7999998765310      0 010     111111245678899999999999


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +.++. ++.   .+.+.+|+++.+|.+|+|+|.+|+..
T Consensus        84 ~~i~~-~~~---~v~~~~g~~~~~d~lviAtG~~p~~~  117 (431)
T 1q1r_A           84 TAINR-DRQ---QVILSDGRALDYDRLVLATGGRPRPL  117 (431)
T ss_dssp             EEEET-TTT---EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EEEEC-CCC---EEEECCCCEEECCEEEEcCCCCccCC
Confidence            99975 222   46678888999999999999988754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.65  E-value=4.6e-08  Score=95.95  Aligned_cols=101  Identities=15%  Similarity=0.250  Sum_probs=74.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccC--C----ccCCH------HHHHHHHHHHHhCCCEEEeCCeee
Q 018416           40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM--A----RLFTP------KIASYYEEYYKSKGVKFVKGTVLS  105 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l--~----~~~d~------~~~~~~~~~l~~~GV~v~~~~~v~  105 (356)
                      ++++|||||+.|+.+|..|+++  |.+|+++++.+.+.  +    ..+..      ++.....+.+++.|++++++++++
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            5899999999999999999998  89999999988643  1    10111      111114567788999999999999


Q ss_pred             EEEEcCCCcEEEEE-eCCCcEEecCeEEEecCCCCCch
Q 018416          106 SFDVDSNGKVVAVN-LRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       106 ~i~~~~~g~v~~v~-~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +++. ++.. ..+. ..+++++.+|.+++|+|.+|...
T Consensus        83 ~id~-~~~~-v~v~~~~~~~~~~~d~lviAtG~~p~~p  118 (452)
T 3oc4_A           83 AMDV-ENQL-IAWTRKEEQQWYSYDKLILATGASQFST  118 (452)
T ss_dssp             EEET-TTTE-EEEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred             EEEC-CCCE-EEEEecCceEEEEcCEEEECCCcccCCC
Confidence            9975 3332 2333 23557899999999999988653

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.64  E-value=2.1e-07  Score=93.97  Aligned_cols=105  Identities=16%  Similarity=0.144  Sum_probs=80.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc--------------------------------------C--
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL--------------------------------------F--   79 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~--------------------------------------~--   79 (356)
                      .+|+|||+|..|+.+|..|++.|.+|+|+++.+.+....                                      .  
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~  206 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP  206 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            579999999999999999999999999999976542100                                      0  


Q ss_pred             -----------------------------------------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCC
Q 018416           80 -----------------------------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN  112 (356)
Q Consensus        80 -----------------------------------------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~  112 (356)
                                                                     ...+...+.+.+++.||+++++++++++..+++
T Consensus       207 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~  286 (571)
T 1y0p_A          207 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK  286 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred             HHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC
Confidence                                                           123445666777889999999999999987444


Q ss_pred             CcEEEEEeC--CCc--EEecCeEEEecCCCC-Cchhh
Q 018416          113 GKVVAVNLR--DGN--RLPTDMVVVGIGIRP-NTSLF  144 (356)
Q Consensus       113 g~v~~v~~~--~g~--~i~~D~vi~a~G~~p-~~~l~  144 (356)
                      +++..+.+.  +|+  ++.+|.||+|+|... |.++.
T Consensus       287 g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n~~~~  323 (571)
T 1y0p_A          287 GTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERV  323 (571)
T ss_dssp             SCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred             CeEEEEEEEeCCCcEEEEECCeEEEeCCCcccCHHHH
Confidence            777666554  675  689999999999654 44443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.63  E-value=4.9e-08  Score=98.95  Aligned_cols=103  Identities=15%  Similarity=0.158  Sum_probs=76.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccC----------CccC-C--HHHHHHHHHHHHhCCCEEEeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM----------ARLF-T--PKIASYYEEYYKSKGVKFVKGT  102 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l----------~~~~-d--~~~~~~~~~~l~~~GV~v~~~~  102 (356)
                      ..++|+|||||+.|+.+|..|+++  |.+|+++++.+.+.          ...+ +  ..+...+....++.|+++++++
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~  114 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS  114 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence            457899999999999999999998  89999999998741          1001 1  1123345566678899999999


Q ss_pred             eeeEEEEcCCCcEEEEE-eCCCc--EEecCeEEEecCCCCCch
Q 018416          103 VLSSFDVDSNGKVVAVN-LRDGN--RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       103 ~v~~i~~~~~g~v~~v~-~~~g~--~i~~D~vi~a~G~~p~~~  142 (356)
                      .+++++. +++.+ .+. +.+|+  ++.+|.+|+|+|.+|...
T Consensus       115 ~V~~id~-~~~~v-~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (588)
T 3ics_A          115 EVVKINK-EEKTI-TIKNVTTNETYNEAYDVLILSPGAKPIVP  155 (588)
T ss_dssp             EEEEEET-TTTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEEEC-CCCEE-EEeecCCCCEEEEeCCEEEECCCCCCCCC
Confidence            9999975 33433 333 24566  789999999999877643

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.63  E-value=5.1e-08  Score=94.47  Aligned_cols=100  Identities=21%  Similarity=0.326  Sum_probs=77.4

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCc--EEEEeeCCccC------C-ccC-----CHHHHHHHHHHHHhCCCEEEeCCee
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKIN--VTMVFPEAHCM------A-RLF-----TPKIASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~--Vtlv~~~~~~l------~-~~~-----d~~~~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      .++++|||+|+.|+.+|..|++.|.+  |+++++.+.+.      . ..+     ..++.....+.+++.||+++.++++
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   88 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEV   88 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEE
Confidence            46899999999999999999999987  99999986531      1 111     1122223356778899999999999


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +.++.  +.+  .+.+.+|+++.+|.+++|+|.+|...
T Consensus        89 ~~id~--~~~--~v~~~~g~~~~~d~lvlAtG~~~~~~  122 (415)
T 3lxd_A           89 VSLDP--AAH--TVKLGDGSAIEYGKLIWATGGDPRRL  122 (415)
T ss_dssp             EEEET--TTT--EEEETTSCEEEEEEEEECCCEECCCC
T ss_pred             EEEEC--CCC--EEEECCCCEEEeeEEEEccCCccCCC
Confidence            99975  232  46778899999999999999887654

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.62  E-value=1.9e-07  Score=89.37  Aligned_cols=101  Identities=18%  Similarity=0.178  Sum_probs=77.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc------CCcc-----------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC------MARL-----------------------------------   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~------l~~~-----------------------------------   78 (356)
                      .+|+|||||+.|+.+|..|++.|.+|+|+|+.+..      -...                                   
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            47999999999999999999999999999988641      0000                                   


Q ss_pred             -----------------CC-HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe-CCCc--EEecCeEEEecCC
Q 018416           79 -----------------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGI  137 (356)
Q Consensus        79 -----------------~d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~vi~a~G~  137 (356)
                                       ++ .++.+.+.+.+.+.|++++.++++++++.++++.+ .+++ .+|+  ++.+|+||.|.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGF  161 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCT
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCC
Confidence                             01 33455666777778999999999999986333333 4565 6787  7999999999998


Q ss_pred             CCCc
Q 018416          138 RPNT  141 (356)
Q Consensus       138 ~p~~  141 (356)
                      .+..
T Consensus       162 ~S~v  165 (394)
T 1k0i_A          162 HGIS  165 (394)
T ss_dssp             TCST
T ss_pred             CcHH
Confidence            7664

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.60  E-value=8.1e-08  Score=94.64  Aligned_cols=102  Identities=23%  Similarity=0.278  Sum_probs=64.2

Q ss_pred             CCcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCcc------CCccCC------HHH-------HHHHHHHHHhCCCE
Q 018416           39 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHC------MARLFT------PKI-------ASYYEEYYKSKGVK   97 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~------l~~~~d------~~~-------~~~~~~~l~~~GV~   97 (356)
                      .++|+|||||+.|+.+|..|+++  |.+|+|+++.+.+      ++..+.      .++       ........++.|++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            36899999999999999999998  9999999999874      121111      111       11222222358999


Q ss_pred             EEeCCeeeEEEEcCCCcEEEEE-eCCCc--EEecCeEEEecCCCCCch
Q 018416           98 FVKGTVLSSFDVDSNGKVVAVN-LRDGN--RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        98 v~~~~~v~~i~~~~~g~v~~v~-~~~g~--~i~~D~vi~a~G~~p~~~  142 (356)
                      +++++++++++. ++..+ .+. +.+|+  ++.+|.+++|+|.+|...
T Consensus        83 ~~~~~~V~~id~-~~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p  128 (472)
T 3iwa_A           83 ALVETRAHAIDR-AAHTV-EIENLRTGERRTLKYDKLVLALGSKANRP  128 (472)
T ss_dssp             EECSEEEEEEET-TTTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEECCEEEEEEC-CCCEE-EEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence            999999999975 33333 333 23465  799999999999877643

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.60  E-value=2.8e-07  Score=86.77  Aligned_cols=56  Identities=18%  Similarity=0.263  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCC
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRP  139 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p  139 (356)
                      +.+.+.+.++++|++++++++|++++.++++.+ .+.+.+|  .++.+|.||+|+|...
T Consensus       152 ~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          152 LMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGF-ELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECTTSSE-EEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEcCCceE-EEEECCCceeEEEeCEEEECCCcch
Confidence            344566777889999999999999987444433 4777777  4799999999999763

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.58  E-value=1.8e-07  Score=87.79  Aligned_cols=164  Identities=16%  Similarity=0.174  Sum_probs=103.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCcc-------------------------------------CC
Q 018416           40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARL-------------------------------------FT   80 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~~-------------------------------------~d   80 (356)
                      .+|+|||+|+.|+.+|..|++.  |.+|+++++.+.+....                                     ..
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~  145 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA  145 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence            4899999999999999999998  99999999976542100                                     02


Q ss_pred             HHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcC--C-C--cEEEEEeC--------------CCcEEec------------
Q 018416           81 PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDS--N-G--KVVAVNLR--------------DGNRLPT------------  128 (356)
Q Consensus        81 ~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~--~-g--~v~~v~~~--------------~g~~i~~------------  128 (356)
                      .++...+.+.+.+. ||+++.++.++++..++  + +  ++..+.+.              ++.++.+            
T Consensus       146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~  225 (326)
T 2gjc_A          146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS  225 (326)
T ss_dssp             HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred             HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence            34455566666664 99999999999997643  3 4  67666542              3457999            


Q ss_pred             ---CeEEEecCCCCCc-hhhhccc-cc-ccC------c--------EEEecccc-cCCCCEEEEccccccCccccCcccc
Q 018416          129 ---DMVVVGIGIRPNT-SLFEGQL-TL-EKG------G--------IKVTGRLQ-SSNSSVYAVGDVAAFPLKLLGETRR  187 (356)
Q Consensus       129 ---D~vi~a~G~~p~~-~l~~~~l-~~-~~g------~--------I~vd~~l~-ts~~~VyAiGD~~~~~~~~~g~~~~  187 (356)
                         |.||.|+|..... .+....+ .. ..+      .        .+|+..-. +-+|++|++|-.+..-.   |.++.
T Consensus       226 ~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~r~  302 (326)
T 2gjc_A          226 QKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELD---GLNRM  302 (326)
T ss_dssp             TTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHH---TCCBC
T ss_pred             ccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhc---CCCCC
Confidence               9999999977543 2322211 00 000      0        11222222 15899999999875422   23332


Q ss_pred             cccHHHHHHHHHHHHHHHc
Q 018416          188 LEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       188 ~~~~~~A~~~g~~aa~~i~  206 (356)
                      =+.-..-.-.|+.||+.|+
T Consensus       303 g~~fg~m~~sg~~~a~~~~  321 (326)
T 2gjc_A          303 GPTFGAMALSGVHAAEQIL  321 (326)
T ss_dssp             CSCCHHHHHHHHHHHHHHH
T ss_pred             ChhhhhhhhhhHHHHHHHH
Confidence            2333334457788887765

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.58  E-value=2.5e-07  Score=87.99  Aligned_cols=56  Identities=18%  Similarity=0.230  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      .+.+.+.+.+++.|++++.+++|++++.+ ++.+ .+.+.+| ++.+|.||+|+|....
T Consensus       165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~s~  220 (382)
T 1ryi_A          165 FVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSG-DVWANHVVVASGVWSG  220 (382)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTE-EEEEEEEEECCGGGTH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCc-eEEcCEEEECCChhHH
Confidence            45566777888899999999999999863 4444 6777776 8999999999998643

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.58  E-value=3.6e-07  Score=84.62  Aligned_cols=98  Identities=18%  Similarity=0.196  Sum_probs=74.9

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc---cC--------Cc---cCCHHHHHHHHHHHHhCCCEEEeCCeeeE
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH---CM--------AR---LFTPKIASYYEEYYKSKGVKFVKGTVLSS  106 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~---~l--------~~---~~d~~~~~~~~~~l~~~GV~v~~~~~v~~  106 (356)
                      .|+|||+|+.|+.+|..|+++|.+|+|+++...   ++        +.   ...+++.......+.+.++.+..+.....
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV   87 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence            689999999999999999999999999997531   11        11   12367777778888888999888877666


Q ss_pred             EEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          107 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       107 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      ... ...   .....+++++.+|.+|+|+|.+|...
T Consensus        88 ~~~-~~~---~~~~~~~~~~~~d~liiAtGs~~~~~  119 (312)
T 4gcm_A           88 EDK-GEY---KVINFGNKELTAKAVIIATGAEYKKI  119 (312)
T ss_dssp             EEC-SSC---EEEECSSCEEEEEEEEECCCEEECCC
T ss_pred             eee-ecc---eeeccCCeEEEeceeEEcccCccCcC
Confidence            543 222   34456788999999999999887653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.58  E-value=1.3e-07  Score=92.47  Aligned_cols=100  Identities=22%  Similarity=0.308  Sum_probs=71.1

Q ss_pred             CCcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccC------CccC-----CHHHHHHHHHHH-HhCCCEEEeCCee
Q 018416           39 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM------ARLF-----TPKIASYYEEYY-KSKGVKFVKGTVL  104 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l------~~~~-----d~~~~~~~~~~l-~~~GV~v~~~~~v  104 (356)
                      .++++|||||+.|+.+|..|++.  |.+|+++++.+.+.      +..+     ..++.....+.+ ++.||++++++++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            47899999999999999999998  88999999987542      1111     111222222334 6789999999999


Q ss_pred             eEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCCCCCch
Q 018416          105 SSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~  142 (356)
                      ++++.  +.  ..+.+.++ .++.+|.+++|+|.+|...
T Consensus        83 ~~i~~--~~--~~v~~~~g~~~~~~d~lviAtG~~p~~p  117 (449)
T 3kd9_A           83 IEVDT--GY--VRVRENGGEKSYEWDYLVFANGASPQVP  117 (449)
T ss_dssp             EEECS--SE--EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred             EEEec--CC--CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence            99853  22  34566666 4799999999999887643

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.57  E-value=3.3e-07  Score=87.69  Aligned_cols=55  Identities=16%  Similarity=0.216  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                      +...+.+.+++.|++++.+++|+++.. +++.+..+++.+| ++.+|.||+|+|...
T Consensus       176 ~~~~l~~~~~~~g~~i~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          176 VAWAFARKANEMGVDIIQNCEVTGFIK-DGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEEcCCeEEEEEE-eCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            444566777889999999999999987 4566667777777 799999999999764

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.57  E-value=1.2e-07  Score=92.86  Aligned_cols=102  Identities=16%  Similarity=0.127  Sum_probs=76.3

Q ss_pred             cEEEECCchHHHHHHHHHHHCC-----CcEEEEeeCCccCCc--------------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINK-----INVTMVFPEAHCMAR--------------------------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G-----~~Vtlv~~~~~~l~~--------------------------------------   77 (356)
                      +|+|||+|+.|+.+|..|++.|     .+|+++++.+.+.-.                                      
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~  111 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD  111 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence            7999999999999999999999     999999998742100                                      


Q ss_pred             ----------c--CCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCC-CcE--EEEEeCCCc----EEecCeEEEecCCC
Q 018416           78 ----------L--FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKV--VAVNLRDGN----RLPTDMVVVGIGIR  138 (356)
Q Consensus        78 ----------~--~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-g~v--~~v~~~~g~----~i~~D~vi~a~G~~  138 (356)
                                .  ...++.+.+....++.+++++++++|++++.+++ +..  ..+.+.+|+    ++.+|.||+|+|.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~  191 (463)
T 3s5w_A          112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT  191 (463)
T ss_dssp             CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred             ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence                      0  0134455555666677999999999999976321 322  256666665    89999999999987


Q ss_pred             CCch
Q 018416          139 PNTS  142 (356)
Q Consensus       139 p~~~  142 (356)
                      |...
T Consensus       192 p~~p  195 (463)
T 3s5w_A          192 PRIP  195 (463)
T ss_dssp             ECCC
T ss_pred             CCCc
Confidence            7643

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.56  E-value=5.1e-07  Score=91.27  Aligned_cols=120  Identities=18%  Similarity=0.164  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHhcC--CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc------------------------
Q 018416           25 ADANRLVNVMKSC--SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------   78 (356)
Q Consensus        25 ~da~~i~~~l~~~--~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~------------------------   78 (356)
                      .|...++..+...  ...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+....                        
T Consensus       110 ~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~  189 (572)
T 1d4d_A          110 ADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKK  189 (572)
T ss_dssp             SSHHHHHHHHHSCCCEECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCT
T ss_pred             ccHHHHHHHhhccCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCH
Confidence            4566676666531  23589999999999999999999999999999876432100                        


Q ss_pred             --------------C-------------------------------------------------CHHHHHHHHHHHHhCC
Q 018416           79 --------------F-------------------------------------------------TPKIASYYEEYYKSKG   95 (356)
Q Consensus        79 --------------~-------------------------------------------------d~~~~~~~~~~l~~~G   95 (356)
                                    .                                                 ...+...+.+.+++.|
T Consensus       190 ~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~g  269 (572)
T 1d4d_A          190 QIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRG  269 (572)
T ss_dssp             HHHHHHHHHHTTTCSCHHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcC
Confidence                          0                                                 1234455667778899


Q ss_pred             CEEEeCCeeeEEEEcCCCcEEEEEeC--CCc--EEecCeEEEecCCCCC-chhh
Q 018416           96 VKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIGIRPN-TSLF  144 (356)
Q Consensus        96 V~v~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~vi~a~G~~p~-~~l~  144 (356)
                      |++++++.++++..++++++..+.+.  +|+  ++.+|.||+|+|..++ .+++
T Consensus       270 v~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~  323 (572)
T 1d4d_A          270 TDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV  323 (572)
T ss_dssp             CEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred             CeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccCHHHH
Confidence            99999999999976332777666654  564  6899999999997664 3444

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.56  E-value=3.7e-07  Score=92.85  Aligned_cols=99  Identities=15%  Similarity=0.160  Sum_probs=77.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc-cC-----------------------Cc------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CM-----------------------AR------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~-~l-----------------------~~------------------   77 (356)
                      -.|+|||||+.|+++|..+++.|.+|+|+++.+. +.                       ..                  
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            3799999999999999999999999999998631 10                       00                  


Q ss_pred             -----------cCC-HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           78 -----------LFT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        78 -----------~~d-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                                 .+| ..+...+.+.+++ .|++++ ++.++++.. +++.+..|.+.+|.++.+|.||+|+|..+.
T Consensus       109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~-e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE-SSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEe-cCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence                       011 1345666777877 699995 678999976 466777888888989999999999998764

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.56  E-value=7.5e-07  Score=84.67  Aligned_cols=54  Identities=20%  Similarity=0.282  Sum_probs=43.1

Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                      ...+.+.+++.|++++.+++|++++. +++.+..+++.+| ++.+|.||+|+|...
T Consensus       152 ~~~l~~~~~~~Gv~i~~~~~v~~i~~-~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          152 TTAFAVKAKEYGAKLLEYTEVKGFLI-ENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHCCCEEECCceEEEEEE-ECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            34456677788999999999999987 3556655777777 899999999999764

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.54  E-value=3.4e-07  Score=89.64  Aligned_cols=101  Identities=18%  Similarity=0.204  Sum_probs=78.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--c----------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--R----------------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--~----------------------------------------   77 (356)
                      .+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+..  .                                        
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            4799999999999999999999999999998764210  0                                        


Q ss_pred             ---------cCC-HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---CCc--EEecCeEEEecCCCCCc
Q 018416           78 ---------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        78 ---------~~d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~  141 (356)
                               .++ .++.+.+.+.+++.|++++.+++|+++.. +++.+..+++.   +|+  ++.+|.||.|.|..+..
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~-~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v  164 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIF-EDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF  164 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence                     001 24566677777889999999999999986 35555445543   675  79999999999977654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.54  E-value=5.1e-07  Score=90.63  Aligned_cols=98  Identities=16%  Similarity=0.238  Sum_probs=75.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC--------Cc------------cCC----------------HHH
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------AR------------LFT----------------PKI   83 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l--------~~------------~~d----------------~~~   83 (356)
                      .+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+.        +.            .+.                +++
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            479999999999999999999999999999976431        10            011                345


Q ss_pred             HHHHHHHHHhCC--CEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416           84 ASYYEEYYKSKG--VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        84 ~~~~~~~l~~~G--V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                      .+.+....++.+  ++++++++|++++.++++....|++.+|+++.+|.||+|+|.
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~  152 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ  152 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCC
Confidence            555666666655  678999999999865444344678888989999999999995

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.54  E-value=6.4e-07  Score=85.58  Aligned_cols=100  Identities=17%  Similarity=0.165  Sum_probs=74.0

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------cCCHHHH------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LFTPKIA------------------------------   84 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------~~d~~~~------------------------------   84 (356)
                      +|+|||||+.|+-+|..|++.|++|+|+|+.+.+...      .+.+...                              
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   82 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN   82 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence            7999999999999999999999999999987654221      0112111                              


Q ss_pred             -----------------------------HHHHHHHH-hCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEe
Q 018416           85 -----------------------------SYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  134 (356)
Q Consensus        85 -----------------------------~~~~~~l~-~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a  134 (356)
                                                   ..+.+.|. ..+.++++++++++++..+++.+ .+++.||+++++|+||-|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVgA  161 (412)
T 4hb9_A           83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGI-KIFFADGSHENVDVLVGA  161 (412)
T ss_dssp             TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEEC
T ss_pred             CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEEC
Confidence                                         11223332 23456888999999987666654 688999999999999999


Q ss_pred             cCCCCCc
Q 018416          135 IGIRPNT  141 (356)
Q Consensus       135 ~G~~p~~  141 (356)
                      -|.+...
T Consensus       162 DG~~S~v  168 (412)
T 4hb9_A          162 DGSNSKV  168 (412)
T ss_dssp             CCTTCHH
T ss_pred             CCCCcch
Confidence            9987643

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.54  E-value=7.9e-07  Score=90.18  Aligned_cols=100  Identities=24%  Similarity=0.241  Sum_probs=78.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc-cC-----------------------Cc------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CM-----------------------AR------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~-~l-----------------------~~------------------   77 (356)
                      -.|+|||||..|+++|..+++.|.+|+|+++.+. +.                       ..                  
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~  107 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT  107 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence            4799999999999999999999999999998731 10                       00                  


Q ss_pred             -----------cCC-HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416           78 -----------LFT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        78 -----------~~d-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                                 ..| ..+...+.+.+++ .||+++ +..|+++.. +++.+..|.+.+|+++.+|.||+|+|..++.
T Consensus       108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~-e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~  182 (637)
T 2zxi_A          108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIV-KNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG  182 (637)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEE-SSSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred             ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEe-cCCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence                       001 1345566677777 599995 678999876 5677778889999999999999999987654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.53  E-value=1.8e-07  Score=90.60  Aligned_cols=100  Identities=25%  Similarity=0.343  Sum_probs=74.2

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCc--EEEEeeCCccCCc--cCCHHHH-HHH-H----HHHHhCCCEEEeCCeeeEEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKIN--VTMVFPEAHCMAR--LFTPKIA-SYY-E----EYYKSKGVKFVKGTVLSSFD  108 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~--Vtlv~~~~~~l~~--~~d~~~~-~~~-~----~~l~~~GV~v~~~~~v~~i~  108 (356)
                      ..+++|||+|+.|+.+|..|+++|.+  |+++++.+.+.-.  .+...+. ... .    +.+++.||+++.+++++.++
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~   86 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD   86 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEEE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEEE
Confidence            46899999999999999999999984  9999998764210  0122111 100 0    03567899999999999997


Q ss_pred             EcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          109 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       109 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      .  ++.  .+.+.+|+++++|.+|+|+|.+|...
T Consensus        87 ~--~~~--~v~~~~g~~~~~d~lviAtG~~~~~~  116 (408)
T 2gqw_A           87 P--QAH--TVALSDGRTLPYGTLVLATGAAPRAL  116 (408)
T ss_dssp             T--TTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             C--CCC--EEEECCCCEEECCEEEECCCCCCCCC
Confidence            5  222  46678888999999999999888654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.52  E-value=1.1e-07  Score=95.78  Aligned_cols=101  Identities=18%  Similarity=0.143  Sum_probs=71.8

Q ss_pred             CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCc------c----C-CH--HHHHHHHHHHHhCCCEEEeCCee
Q 018416           40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR------L----F-TP--KIASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~------~----~-d~--~~~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      ++|+|||||+.|+.+|..|+++  |.+||++++.+.+.-.      .    + ++  .+........++.|++++++++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            5899999999999999999998  8899999998764210      0    0 00  01112233344579999999999


Q ss_pred             eEEEEcCCCcEEEEE-eCCCc--EEecCeEEEecCCCCCch
Q 018416          105 SSFDVDSNGKVVAVN-LRDGN--RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~-~~~g~--~i~~D~vi~a~G~~p~~~  142 (356)
                      ++++. +++.+ .+. +.+|+  ++.+|.+|+|+|.+|...
T Consensus        82 ~~id~-~~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p  120 (565)
T 3ntd_A           82 VAIDR-AAKLV-TVRRLLDGSEYQESYDTLLLSPGAAPIVP  120 (565)
T ss_dssp             EEEET-TTTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEC-CCCEE-EEEecCCCCeEEEECCEEEECCCCCCCCC
Confidence            99975 33333 333 23354  799999999999877653

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.52  E-value=5.7e-07  Score=86.42  Aligned_cols=102  Identities=18%  Similarity=0.241  Sum_probs=73.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc------CCH----HH------------------------
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------FTP----KI------------------------   83 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~------~d~----~~------------------------   83 (356)
                      ...+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+..+.      +.+    ++                        
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~  104 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE  104 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence            45689999999999999999999999999999986532110      000    00                        


Q ss_pred             ----------------------HHHHHHHHHh--CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           84 ----------------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        84 ----------------------~~~~~~~l~~--~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                                            ...+.+.|.+  .++++++++++++++.++++  ..+++.+|+++.+|.||.|.|..+
T Consensus       105 ~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          105 KGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKK--WTLTFENKPSETADLVILANGGMS  182 (398)
T ss_dssp             SSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSS--EEEEETTSCCEEESEEEECSCTTC
T ss_pred             CCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCE--EEEEECCCcEEecCEEEECCCcch
Confidence                                  0112222322  13678999999999874433  357888998999999999999876


Q ss_pred             Cc
Q 018416          140 NT  141 (356)
Q Consensus       140 ~~  141 (356)
                      ..
T Consensus       183 ~v  184 (398)
T 2xdo_A          183 KV  184 (398)
T ss_dssp             SC
T ss_pred             hH
Confidence            53

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.52  E-value=7.4e-07  Score=90.40  Aligned_cols=102  Identities=20%  Similarity=0.251  Sum_probs=79.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------------------
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------   77 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------------   77 (356)
                      ...+|+|||||+.|+-+|..|++.|.+|+|+|+.+..-..                                        
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  101 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQD  101 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCC
Confidence            3578999999999999999999999999999987311000                                        


Q ss_pred             ----------------------cCC-HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CC--cEEecCeE
Q 018416           78 ----------------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTDMV  131 (356)
Q Consensus        78 ----------------------~~d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D~v  131 (356)
                                            .++ ..+...+.+.+++.||+++.+++|+++..+ ++.+..|.+. +|  .++.+|.|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlV  180 (591)
T 3i3l_A          102 QAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFV  180 (591)
T ss_dssp             CCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEE
T ss_pred             CccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEE
Confidence                                  011 345666777888899999999999999863 4555667776 66  57999999


Q ss_pred             EEecCCCCC
Q 018416          132 VVGIGIRPN  140 (356)
Q Consensus       132 i~a~G~~p~  140 (356)
                      |.|+|..+.
T Consensus       181 V~AdG~~S~  189 (591)
T 3i3l_A          181 IDAGGSGGP  189 (591)
T ss_dssp             EECCGGGCH
T ss_pred             EECCCCcch
Confidence            999998653

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.50  E-value=2.6e-09  Score=105.61  Aligned_cols=144  Identities=12%  Similarity=0.060  Sum_probs=93.7

Q ss_pred             EEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH--------HHHHHHHHHhCCCEEEeCCeeeEEEEcCCC
Q 018416           42 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI--------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  113 (356)
Q Consensus        42 vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~--------~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g  113 (356)
                      ++++|+|  ++++++.++..|..+ +.+++++++++ ++++.        +..+.+.+++.|. ++++.+.  +   + .
T Consensus       215 ~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~-~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~~--~---~-~  283 (472)
T 2e5v_A          215 VTSLDGE--VFLLTETLRGEGAQI-INENGERFLFN-YDKRGELAPRDILSRAIYIEMLKGHK-VFIDLSK--I---E-D  283 (472)
T ss_dssp             EECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGG-TCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECTT--C---T-T
T ss_pred             EEccCCC--ceeeehhhcCCceEE-ECCCCCCCCcc-CCcccCcCchhHHHHHHHHHHHhCCc-EEEeccc--h---H-H
Confidence            4556776  899999999999888 88899999876 56543        6677777777663 3322210  0   0 0


Q ss_pred             cEEEEEeCCCcEEe-cCeEEEecCCCCCchhhhcc--cccccCcEEEecccccCCCCEEEEccccccCccccCccccc-c
Q 018416          114 KVVAVNLRDGNRLP-TDMVVVGIGIRPNTSLFEGQ--LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-E  189 (356)
Q Consensus       114 ~v~~v~~~~g~~i~-~D~vi~a~G~~p~~~l~~~~--l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~  189 (356)
                            +  .++++ .+.++++.|..|+ ++++-.  .....|+|.||+++||++|+|||+|||+....  +|..+.. .
T Consensus       284 ------~--~~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~~--hg~~rl~~~  352 (472)
T 2e5v_A          284 ------F--ERKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDSGL--HGANRLASN  352 (472)
T ss_dssp             ------H--HHHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEECSS--STTSCCTTH
T ss_pred             ------H--HHHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhccccc--CCCCCCCcc
Confidence                  0  12343 4777888999999 544322  11257999999999999999999999988311  1222111 1


Q ss_pred             cHHHHHHHHHHHHHHHcC
Q 018416          190 HVDSARKSAKHAVAAIME  207 (356)
Q Consensus       190 ~~~~A~~~g~~aa~~i~g  207 (356)
                      ....+...|+.|+.++.+
T Consensus       353 sl~~~~v~G~~a~~~~a~  370 (472)
T 2e5v_A          353 SLLEGLVFGINLPRYVDS  370 (472)
T ss_dssp             HHHHHHHHHHHGGGTTTS
T ss_pred             cHHHHHHHHHHHHHHHHh
Confidence            233455567777777654

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.50  E-value=1e-06  Score=89.31  Aligned_cols=102  Identities=22%  Similarity=0.336  Sum_probs=80.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHC------CCcEEEEeeCCccCCc------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVIN------KINVTMVFPEAHCMAR------------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~------G~~Vtlv~~~~~~l~~------------------------------------   77 (356)
                      -+|+|||||+.|+.+|..|++.      |.+|+|+|+.+.+...                                    
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            4799999999999999999999      9999999987543110                                    


Q ss_pred             c--------C---C--------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC------CC---
Q 018416           78 L--------F---T--------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR------DG---  123 (356)
Q Consensus        78 ~--------~---d--------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~------~g---  123 (356)
                      +        +   +              ..+.+.+.+.+++.||++++++.++++..++++.+..|.+.      +|   
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~  195 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  195 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence            0        0   0              14456677778888999999999999987556777667765      33   


Q ss_pred             ------cEEecCeEEEecCCCCCc
Q 018416          124 ------NRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       124 ------~~i~~D~vi~a~G~~p~~  141 (356)
                            .++.+|.||.|.|..+..
T Consensus       196 ~~~~~g~~i~Ad~VV~AdG~~S~v  219 (584)
T 2gmh_A          196 TTFERGLELHAKVTIFAEGCHGHL  219 (584)
T ss_dssp             EEEECCCEEECSEEEECCCTTCHH
T ss_pred             cccCCceEEECCEEEEeeCCCchH
Confidence                  689999999999988753

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.50  E-value=5.1e-07  Score=86.91  Aligned_cols=101  Identities=20%  Similarity=0.297  Sum_probs=75.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------------------
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------   77 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------------   77 (356)
                      +..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                                        
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            3568999999999999999999999999999997643100                                        


Q ss_pred             --c---CC-----------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEec
Q 018416           78 --L---FT-----------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  135 (356)
Q Consensus        78 --~---~d-----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  135 (356)
                        .   ++                 ..+.+.+.+.+++  ++++++++|++++.++++  ..+++.+|+++.+|+||.|.
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~Ad  177 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADG--VTVWFTDGSSASGDLLIAAD  177 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTE--EEEEETTSCEEEESEEEECC
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCc--EEEEEcCCCEEeeCEEEECC
Confidence              0   00                 1233344444444  889999999999874433  45888999999999999999


Q ss_pred             CCCCCch
Q 018416          136 GIRPNTS  142 (356)
Q Consensus       136 G~~p~~~  142 (356)
                      |......
T Consensus       178 G~~S~vr  184 (407)
T 3rp8_A          178 GSHSALR  184 (407)
T ss_dssp             CTTCSSH
T ss_pred             CcChHHH
Confidence            9876653

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.50  E-value=1.9e-06  Score=81.24  Aligned_cols=164  Identities=14%  Similarity=0.137  Sum_probs=104.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCc---------------------------------c----CC
Q 018416           40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR---------------------------------L----FT   80 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~---------------------------------~----~d   80 (356)
                      -.|+|||+|+.|+.+|..|+++  |.+|+|+++.+.+...                                 +    ..
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~  159 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHA  159 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEecH
Confidence            5799999999999999999997  9999999998643200                                 0    02


Q ss_pred             HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCC----------------C--cEEEEEeC--------------CCcEEe
Q 018416           81 PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSN----------------G--KVVAVNLR--------------DGNRLP  127 (356)
Q Consensus        81 ~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~----------------g--~v~~v~~~--------------~g~~i~  127 (356)
                      .+..+.+.+.+++ .|++++.++.++++..+++                +  ++..+...              +..++.
T Consensus       160 ~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~  239 (344)
T 3jsk_A          160 ALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTIN  239 (344)
T ss_dssp             HHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEE
Confidence            3444566666777 5999999999998865332                3  55555441              234799


Q ss_pred             cCeEEEecCCCCCc-hh-hh----ccccc-ccC--cEEEe-------cccccCCCCEEEEccccccCccccCcccccccH
Q 018416          128 TDMVVVGIGIRPNT-SL-FE----GQLTL-EKG--GIKVT-------GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV  191 (356)
Q Consensus       128 ~D~vi~a~G~~p~~-~l-~~----~~l~~-~~g--~I~vd-------~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~  191 (356)
                      ++.||.|+|..... .+ .+    -.+.. ..|  ...++       ++-+--+|++|++|-.+...   +|.+++-|.-
T Consensus       240 Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~~~---~g~~rmgp~f  316 (344)
T 3jsk_A          240 APVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEI---DGANRMGPTF  316 (344)
T ss_dssp             CSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHHHH---HTCEECCSCC
T ss_pred             cCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhHhh---cCCCCCCccc
Confidence            99999999977652 11 11    11110 111  11111       11111379999999887642   2444443444


Q ss_pred             HHHHHHHHHHHHHHc
Q 018416          192 DSARKSAKHAVAAIM  206 (356)
Q Consensus       192 ~~A~~~g~~aa~~i~  206 (356)
                      ..=...|+.||+.|+
T Consensus       317 g~m~~sg~~~a~~~~  331 (344)
T 3jsk_A          317 GAMALSGVKAAHEAI  331 (344)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             ceeeecCHHHHHHHH
Confidence            444567888887765

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.49  E-value=7.2e-08  Score=94.86  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=71.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc-------CCcc-CCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------MARL-FTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~-------l~~~-~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+++|+|||||+.|+.+|..|++.|++|+|+++.+.+       ++.+ ++.++.....+.+++.||++++++.+..   
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  197 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGR---  197 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBTT---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEecc---
Confidence            3578999999999999999999999999999998765       2321 4677888888899999999999987521   


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                             .+.++++ .+++|.|++|+|..
T Consensus       198 -------~v~~~~~-~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          198 -------DASLPEL-RRKHVAVLVATGVY  218 (456)
T ss_dssp             -------TBCHHHH-HSSCSEEEECCCCC
T ss_pred             -------EEEhhHh-HhhCCEEEEecCCC
Confidence                   1222222 36799999999986

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.47  E-value=1.2e-06  Score=86.61  Aligned_cols=51  Identities=24%  Similarity=0.370  Sum_probs=42.7

Q ss_pred             HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           87 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        87 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      +.+.+++.|++|+++++|++|.. +++++..|+++||+++.+|.||++++..
T Consensus       227 L~~~~~~~Gg~I~~~~~V~~I~~-~~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          227 MIKLFQDLGGEVVLNARVSHMET-TGNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             HHHHHHHhCCceeeecceeEEEe-eCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            34556778999999999999987 5788888999999999999999987744

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.46  E-value=1.9e-07  Score=91.37  Aligned_cols=101  Identities=16%  Similarity=0.157  Sum_probs=73.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCC----------ccC-C-HHHHHHHHHHHHhCCCEEEeCCeee
Q 018416           40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMA----------RLF-T-PKIASYYEEYYKSKGVKFVKGTVLS  105 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~----------~~~-d-~~~~~~~~~~l~~~GV~v~~~~~v~  105 (356)
                      ++++|||+|+.|+.+|..|++.  |.+|+++++.+.+.-          ... + .++.....+.+++.||+++.++.++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            3799999999999999999998  999999999875320          000 1 1122223466778899999999999


Q ss_pred             EEEEcCCCcEEEEEe-CCCc--EEecCeEEEecCCCCCch
Q 018416          106 SFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       106 ~i~~~~~g~v~~v~~-~~g~--~i~~D~vi~a~G~~p~~~  142 (356)
                      .+.. +++.+ .+.. .+|+  ++.+|.+|+|+|.+|...
T Consensus        81 ~i~~-~~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p  118 (447)
T 1nhp_A           81 AIQP-KEHQV-TVKDLVSGEERVENYDKLIISPGAVPFEL  118 (447)
T ss_dssp             EEET-TTTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEeC-CCCEE-EEEecCCCceEEEeCCEEEEcCCCCcCCC
Confidence            9875 23322 3332 3465  489999999999887643

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.46  E-value=6.7e-07  Score=83.98  Aligned_cols=95  Identities=18%  Similarity=0.289  Sum_probs=69.3

Q ss_pred             CcEEEECCchHHHHHHHHHHH---CCCcEEEEeeCCccCCc-------------------cC---CH---HH--------
Q 018416           40 GNAVVIGGGYIGMECAASLVI---NKINVTMVFPEAHCMAR-------------------LF---TP---KI--------   83 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~---~G~~Vtlv~~~~~~l~~-------------------~~---d~---~~--------   83 (356)
                      ++|+|||||++|+-+|..|++   .|.+|+|+|+++.+..+                   .+   +.   ..        
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~   81 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL   81 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence            379999999999999999999   99999999987532110                   00   00   11        


Q ss_pred             ------------------------------HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEE
Q 018416           84 ------------------------------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  133 (356)
Q Consensus        84 ------------------------------~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  133 (356)
                                                    ...++...++.|++++++++|++++.++++  ..+.+.+|+++.+|.||+
T Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vV~  159 (342)
T 3qj4_A           82 AYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK--WEVSKQTGSPEQFDLIVL  159 (342)
T ss_dssp             HTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSS--EEEEESSSCCEEESEEEE
T ss_pred             hCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCE--EEEEECCCCEEEcCEEEE
Confidence                                          111222233348999999999999874444  357788888899999999


Q ss_pred             ecC
Q 018416          134 GIG  136 (356)
Q Consensus       134 a~G  136 (356)
                      |++
T Consensus       160 A~p  162 (342)
T 3qj4_A          160 TMP  162 (342)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            986

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.45  E-value=7.2e-07  Score=89.22  Aligned_cols=100  Identities=21%  Similarity=0.217  Sum_probs=77.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------------------------------------------   76 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------------------------------------------   76 (356)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..                                           
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   85 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE   85 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence            4799999999999999999999999999998753200                                           


Q ss_pred             ------------c-----------------cC-CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCc--EEEEEeCCC-
Q 018416           77 ------------R-----------------LF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK--VVAVNLRDG-  123 (356)
Q Consensus        77 ------------~-----------------~~-d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~--v~~v~~~~g-  123 (356)
                                  .                 .+ ...+...+.+.+++.|+++++++++++++.++++.  -..+++.++ 
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~  165 (535)
T 3ihg_A           86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPD  165 (535)
T ss_dssp             SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETT
T ss_pred             ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCC
Confidence                        0                 00 12455667777888899999999999998754410  234556565 


Q ss_pred             --cEEecCeEEEecCCCC
Q 018416          124 --NRLPTDMVVVGIGIRP  139 (356)
Q Consensus       124 --~~i~~D~vi~a~G~~p  139 (356)
                        .++.+|+||.|.|...
T Consensus       166 ~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          166 GEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             EEEEEEEEEEEECCCTTC
T ss_pred             CeEEEEeCEEEECCCCcc
Confidence              6799999999999875

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.45  E-value=1.2e-06  Score=89.17  Aligned_cols=100  Identities=14%  Similarity=0.297  Sum_probs=76.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc-cC-----------------------Cc------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CM-----------------------AR------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~-~l-----------------------~~------------------   77 (356)
                      -.|+|||||..|+++|..|++.|.+|+|+++.+. +.                       ..                  
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~~  101 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLNR  101 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEECS
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhccc
Confidence            4799999999999999999999999999998741 10                       00                  


Q ss_pred             -----------cCCH-HHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416           78 -----------LFTP-KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        78 -----------~~d~-~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                                 ..|. .+...+.+.+++ .||+++. ..++.+.. +++.+..|.+.+|+++.+|.||+|+|..++.
T Consensus       102 ~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~-d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~  176 (641)
T 3cp8_A          102 SKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSA-NSGKFSSVTVRSGRAIQAKAAILACGTFLNG  176 (641)
T ss_dssp             SSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEE-ETTEEEEEEETTSCEEEEEEEEECCTTCBTC
T ss_pred             ccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEe-cCCEEEEEEECCCcEEEeCEEEECcCCCCCc
Confidence                       0111 445666777777 4999965 48888875 4566666888899999999999999987653

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.43  E-value=1.1e-06  Score=83.12  Aligned_cols=53  Identities=17%  Similarity=0.274  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      +...+.+.+++.|++++.+++|++++.++++  ..+++.+| ++.+|.||+|+|..
T Consensus       151 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~--~~v~~~~g-~~~a~~vV~a~G~~  203 (372)
T 2uzz_A          151 AIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG--VTIETADG-EYQAKKAIVCAGTW  203 (372)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEEcCCE--EEEEECCC-eEEcCEEEEcCCcc
Confidence            3445566777889999999999999874333  35677776 59999999999964

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.41  E-value=2.6e-07  Score=90.29  Aligned_cols=100  Identities=16%  Similarity=0.198  Sum_probs=69.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccCC-c-cC---------CHH--HHHHHHHHHHhCCCEEEeCCeee
Q 018416           41 NAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMA-R-LF---------TPK--IASYYEEYYKSKGVKFVKGTVLS  105 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l~-~-~~---------d~~--~~~~~~~~l~~~GV~v~~~~~v~  105 (356)
                      ||+|||||+.|+.+|..|+++|  .+|+|+++.+...- + .+         +..  +....++.+++.||+++.+++++
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            6999999999999999999988  46999998765321 0 00         000  11112345677899999999999


Q ss_pred             EEEEcCCCcEEEEEeC---CCcEEecCeEEEecCCCCCch
Q 018416          106 SFDVDSNGKVVAVNLR---DGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       106 ~i~~~~~g~v~~v~~~---~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +++. +... ..+...   ++.++.+|.+|+|+|.+|+..
T Consensus        82 ~id~-~~~~-~~~~~~~~~~~~~~~yd~lVIATGs~p~~p  119 (437)
T 4eqs_A           82 AIND-ERQT-VSVLNRKTNEQFEESYDKLILSPGASANSL  119 (437)
T ss_dssp             EEET-TTTE-EEEEETTTTEEEEEECSEEEECCCEEECCC
T ss_pred             EEEc-cCcE-EEEEeccCCceEEEEcCEEEECCCCccccc
Confidence            9975 2332 233322   234689999999999988653

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.41  E-value=2.2e-06  Score=85.75  Aligned_cols=56  Identities=16%  Similarity=0.335  Sum_probs=45.3

Q ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416           85 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        85 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      ..+.+.+++.||+++.+ +|++++.++++.+..+.+.+|+++.+|.||.|+|..+..
T Consensus       169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~  224 (538)
T 2aqj_A          169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL  224 (538)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred             HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence            44555666789999999 899998755666667888889899999999999986554

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.41  E-value=7.9e-07  Score=89.82  Aligned_cols=99  Identities=18%  Similarity=0.246  Sum_probs=77.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------------------------------------Cc----c
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------------------------------------AR----L   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------------------------------------~~----~   78 (356)
                      ..|+|||+|++|+-+|..|++.|.+|+|+|+.+.+.                                     ..    .
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            479999999999999999999999999999864321                                     00    0


Q ss_pred             ---------------C-CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe--CCC-cEEecCeEEEecCCCC
Q 018416           79 ---------------F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--RDG-NRLPTDMVVVGIGIRP  139 (356)
Q Consensus        79 ---------------~-d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~--~~g-~~i~~D~vi~a~G~~p  139 (356)
                                     + ...+.+.+.+.+++.|++++.+++|++++.++++.  .+++  .+| +++.+|+||.|.|...
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v--~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAV--EVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCE--EEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeE--EEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence                           1 13456667777888899999999999998754442  3555  678 7899999999999876


Q ss_pred             C
Q 018416          140 N  140 (356)
Q Consensus       140 ~  140 (356)
                      .
T Consensus       208 ~  208 (570)
T 3fmw_A          208 T  208 (570)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.41  E-value=1.9e-06  Score=85.76  Aligned_cols=101  Identities=19%  Similarity=0.197  Sum_probs=77.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc--------CCc----------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--------MAR----------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~--------l~~----------------------------------   77 (356)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+..        .+.                                  
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   87 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP   87 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence            47999999999999999999999999999998511        000                                  


Q ss_pred             -------------------cCC-HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEE--EeCCCc--EEecCeEEE
Q 018416           78 -------------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV--NLRDGN--RLPTDMVVV  133 (356)
Q Consensus        78 -------------------~~d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v--~~~~g~--~i~~D~vi~  133 (356)
                                         .++ ..+.+.+.+.+++.||+++.+++|+++.. +++.+..+  ...+|+  ++.+|.||.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~-~~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A           88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLF-EGERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEE-ETTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-ECCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence                               011 23455677777889999999999999987 45555434  445674  799999999


Q ss_pred             ecCCCCCc
Q 018416          134 GIGIRPNT  141 (356)
Q Consensus       134 a~G~~p~~  141 (356)
                      |+|.....
T Consensus       167 AdG~~S~v  174 (512)
T 3e1t_A          167 ASGNRTRV  174 (512)
T ss_dssp             CCCTTCSS
T ss_pred             CCCcchHH
Confidence            99987543

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.40  E-value=2.6e-06  Score=81.03  Aligned_cols=56  Identities=21%  Similarity=0.453  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      .+...+.+.+++.|++++.+++|++++.++++  ..+++.+| ++.+|.||+|+|..++
T Consensus       151 ~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~a~~vV~A~G~~~~  206 (389)
T 2gf3_A          151 NCIRAYRELAEARGAKVLTHTRVEDFDISPDS--VKIETANG-SYTADKLIVSMGAWNS  206 (389)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSSC--EEEEETTE-EEEEEEEEECCGGGHH
T ss_pred             HHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe--EEEEeCCC-EEEeCEEEEecCccHH
Confidence            34455667778889999999999999874443  34666655 7999999999997643

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.40  E-value=2.4e-06  Score=87.93  Aligned_cols=54  Identities=15%  Similarity=0.184  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                      ...+.+.+++.|++++++++|+++..+ ++.+ .|++.+|.++.+|.||+|+|...
T Consensus       420 ~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~v-~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          420 TRNVLELAQQQGLQIYYQYQLQNFSRK-DDCW-LLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHHTTCEEEESCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEe-CCeE-EEEECCCCEEECCEEEECCCcch
Confidence            334556667789999999999999874 3443 67888888899999999999653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.39  E-value=1.8e-07  Score=91.71  Aligned_cols=100  Identities=13%  Similarity=0.165  Sum_probs=72.1

Q ss_pred             cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccC----------CccC---CH-HHHHHHHHHHHhCCCEEEeCCee
Q 018416           41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM----------ARLF---TP-KIASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l----------~~~~---d~-~~~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      +++|||+|+.|+.+|..|++.  |.+|+++++.+.+.          ...+   ++ ++.....+.+++.||+++.++.+
T Consensus         2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   81 (452)
T 2cdu_A            2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV   81 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence            699999999999999999998  99999999987531          1101   11 12222345677889999999999


Q ss_pred             eEEEEcCCCcEEEEEe-CC--CcEEecCeEEEecCCCCCch
Q 018416          105 SSFDVDSNGKVVAVNL-RD--GNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~-~~--g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +.++.+ ++.+ .+.. .+  ++++.+|.+++|+|.+|...
T Consensus        82 ~~i~~~-~~~v-~v~~~~~g~~~~~~~d~lviAtGs~p~~p  120 (452)
T 2cdu_A           82 TNVDPE-TKTI-KVKDLITNEEKTEAYDKLIMTTGSKPTVP  120 (452)
T ss_dssp             EEEEGG-GTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEcC-CCEE-EEEecCCCceEEEECCEEEEccCCCcCCC
Confidence            998752 3322 2332 12  45799999999999887643

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.38  E-value=4.4e-07  Score=89.63  Aligned_cols=100  Identities=21%  Similarity=0.297  Sum_probs=71.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccC-Cc-----c-----CC-HHHHHHHHHHH-HhCCCEEEeCCee
Q 018416           40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM-AR-----L-----FT-PKIASYYEEYY-KSKGVKFVKGTVL  104 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l-~~-----~-----~d-~~~~~~~~~~l-~~~GV~v~~~~~v  104 (356)
                      ++++|||+|+.|+.+|..|++.  |.+|+++++.+.+. ..     .     .+ .++.....+.+ ++.||+++.++.+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v  116 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV  116 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence            5899999999999999999996  89999999987531 10     0     00 11111223445 4459999999999


Q ss_pred             eEEEEcCCCcEEEEEe-CCCc--EEecCeEEEecCCCCCc
Q 018416          105 SSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~-~~g~--~i~~D~vi~a~G~~p~~  141 (356)
                      +.++. +++.+ .+.. .+|+  ++.+|.+|+|+|.+|..
T Consensus       117 ~~i~~-~~~~v-~v~~~~~g~~~~~~~d~lviAtG~~p~~  154 (480)
T 3cgb_A          117 TKVDT-EKKIV-YAEHTKTKDVFEFSYDRLLIATGVRPVM  154 (480)
T ss_dssp             EEEET-TTTEE-EEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             EEEEC-CCCEE-EEEEcCCCceEEEEcCEEEECCCCcccC
Confidence            99975 23332 3443 4566  79999999999988764

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.37  E-value=4e-06  Score=83.28  Aligned_cols=101  Identities=21%  Similarity=0.338  Sum_probs=78.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------c-----------------
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------L-----------------   78 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------~-----------------   78 (356)
                      ...+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.+...                      +                 
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   90 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD   90 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence            3468999999999999999999999999999986432100                      0                 


Q ss_pred             -------C-------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc---EEecCeEEEecCCCCC
Q 018416           79 -------F-------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPN  140 (356)
Q Consensus        79 -------~-------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~---~i~~D~vi~a~G~~p~  140 (356)
                             .       ...+.+.+.+.+++.|++++.++++++++.++++ + .+++.++.   ++.+|+||.|.|.+..
T Consensus        91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~~~g~~~~~a~~vVgADG~~S~  167 (499)
T 2qa2_A           91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDH-V-VVEVEGPDGPRSLTTRYVVGCDGGRST  167 (499)
T ss_dssp             GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC-E-EEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred             cccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-E-EEEEEcCCCcEEEEeCEEEEccCcccH
Confidence                   0       1345566777778889999999999999875444 3 46666664   7999999999998754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.36  E-value=1.3e-06  Score=85.77  Aligned_cols=98  Identities=22%  Similarity=0.233  Sum_probs=70.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------------------------------------cCCH-
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------LFTP-   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-------------------------------------~~d~-   81 (356)
                      .+++|||||+.|+.+|..|++.|.+|+|+++.+.+...                                     .++. 
T Consensus         3 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   82 (468)
T 2qae_A            3 YDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDSA   82 (468)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCHH
Confidence            47999999999999999999999999999998643100                                     0111 


Q ss_pred             H-----------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCch
Q 018416           82 K-----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        82 ~-----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~  142 (356)
                      +           +...+.+.+++.||+++.++.+ .++   .+. ..+.+.+|  +++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~---~~~-~~v~~~~G~~~~~~~d~lviAtG~~p~~p  151 (468)
T 2qae_A           83 KMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGS-FET---AHS-IRVNGLDGKQEMLETKKTIIATGSEPTEL  151 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEE-EEE---TTE-EEEEETTSCEEEEEEEEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Eee---CCE-EEEEecCCceEEEEcCEEEECCCCCcCCC
Confidence            1           1112345667789999988754 342   222 35666777  6899999999999887653

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.36  E-value=3e-06  Score=82.20  Aligned_cols=55  Identities=22%  Similarity=0.225  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhCCCEEEeCC---eeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           83 IASYYEEYYKSKGVKFVKGT---VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~---~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      +...+.+.+++.|+++++++   +|+++.. +++.+..|++.+|+++.+|.||+|+|..
T Consensus       163 ~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~-~~~~v~gV~t~~G~~i~Ad~VV~AtG~~  220 (438)
T 3dje_A          163 ALVAAAREAQRMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFLCAGAS  220 (438)
T ss_dssp             HHHHHHHHHHHTTCEEEESTTTTCEEEEEE-ETTEEEEEEETTTEEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHhcCCEEEeCCcCceEEEEEe-cCCeEEEEEECCCCEEECCEEEECCCCC
Confidence            34455566778899999999   9999986 4566766889999899999999999964

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.35  E-value=3.9e-07  Score=90.71  Aligned_cols=100  Identities=17%  Similarity=0.327  Sum_probs=68.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-----C----ccCCH-HHHHHHHHHH--HhCCCEEEeCCeeeEE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-----A----RLFTP-KIASYYEEYY--KSKGVKFVKGTVLSSF  107 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-----~----~~~d~-~~~~~~~~~l--~~~GV~v~~~~~v~~i  107 (356)
                      +||||||||+.|+.+|..|++.+.+||||++.+...     +    ..+++ ++...+.+.+  ++.+++++.+ ++++|
T Consensus        43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~I  121 (502)
T 4g6h_A           43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATSI  121 (502)
T ss_dssp             CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEEE
T ss_pred             CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEEE
Confidence            479999999999999999999999999999987531     1    11222 1222233333  2457888764 67888


Q ss_pred             EEcCCCcEEEEE------------------eCCCcEEecCeEEEecCCCCCch
Q 018416          108 DVDSNGKVVAVN------------------LRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       108 ~~~~~g~v~~v~------------------~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      +. +...+ .+.                  ..++.++++|.+|+|+|.+|+..
T Consensus       122 D~-~~k~V-~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~  172 (502)
T 4g6h_A          122 NP-DRNTV-TIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF  172 (502)
T ss_dssp             EG-GGTEE-EEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred             Eh-hhCEE-EEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence            65 22222 222                  13567899999999999988764

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.35  E-value=3.8e-06  Score=83.41  Aligned_cols=101  Identities=23%  Similarity=0.319  Sum_probs=77.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC----------------------cc-----------------
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------RL-----------------   78 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~----------------------~~-----------------   78 (356)
                      ...+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.+..                      .+                 
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   89 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPID   89 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecc
Confidence            446899999999999999999999999999998753210                      00                 


Q ss_pred             ---C-----------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc---EEecCeEEEecCCCCC
Q 018416           79 ---F-----------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPN  140 (356)
Q Consensus        79 ---~-----------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~---~i~~D~vi~a~G~~p~  140 (356)
                         +           ...+.+.+.+.+++.|++++.++++++++.++++ + .+++.++.   ++.+|+||.|.|.+..
T Consensus        90 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~~~g~~~~~a~~vVgADG~~S~  166 (500)
T 2qa1_A           90 FGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAG-V-TVEVRGPEGKHTLRAAYLVGCDGGRSS  166 (500)
T ss_dssp             GGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTE-E-EEEEEETTEEEEEEESEEEECCCTTCH
T ss_pred             cccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCe-E-EEEEEcCCCCEEEEeCEEEECCCcchH
Confidence               0           0245566677778889999999999999874443 3 46666664   7999999999998754

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.34  E-value=1.6e-06  Score=83.55  Aligned_cols=100  Identities=18%  Similarity=0.217  Sum_probs=74.5

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCccCCcc----CC---------------------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMARL----FT---------------------------------   80 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~~l~~~----~d---------------------------------   80 (356)
                      ..+|+|||||+.|+.+|..|++.|.+ |+|+|+.+.+.+..    +.                                 
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g   83 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   83 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence            35899999999999999999999999 99999976531100    00                                 


Q ss_pred             -----------------------HHHHHHHHHHHHh-CC-CEEEeCCeeeEEEEcCCCcEEEEEeCC---C--cEEecCe
Q 018416           81 -----------------------PKIASYYEEYYKS-KG-VKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDM  130 (356)
Q Consensus        81 -----------------------~~~~~~~~~~l~~-~G-V~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~  130 (356)
                                             .++.+.+.+.+++ .| +++++++++++++. +++  ..+.+.+   |  +++.+|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~--v~v~~~~~~~g~~~~~~ad~  160 (410)
T 3c96_A           84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG--RVLIGARDGHGKPQALGADV  160 (410)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT--EEEEEEEETTSCEEEEEESE
T ss_pred             CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc--cEEEEecCCCCCceEEecCE
Confidence                                   1344556666665 35 68999999999987 455  2355544   7  5799999


Q ss_pred             EEEecCCCCCc
Q 018416          131 VVVGIGIRPNT  141 (356)
Q Consensus       131 vi~a~G~~p~~  141 (356)
                      ||.|.|..+..
T Consensus       161 vV~AdG~~S~v  171 (410)
T 3c96_A          161 LVGADGIHSAV  171 (410)
T ss_dssp             EEECCCTTCHH
T ss_pred             EEECCCccchh
Confidence            99999987654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.33  E-value=1.7e-06  Score=85.12  Aligned_cols=98  Identities=22%  Similarity=0.243  Sum_probs=71.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------cCCHH-H-----
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------LFTPK-I-----   83 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------~~d~~-~-----   83 (356)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                              .++.. +     
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKD   84 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Confidence            37999999999999999999999999999977654211                              01111 0     


Q ss_pred             -----H--HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcE--EecCeEEEecCCCCCch
Q 018416           84 -----A--SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        84 -----~--~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~vi~a~G~~p~~~  142 (356)
                           .  ..+.+.+++.||+++.+ .+..++.   . ...+.+.+|++  +.+|.+|+|+|.+|...
T Consensus        85 ~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~---~-~~~V~~~~g~~~~~~~d~lviAtG~~p~~p  147 (466)
T 3l8k_A           85 YVQELRFKQHKRNMSQYETLTFYKG-YVKIKDP---T-HVIVKTDEGKEIEAETRYMIIASGAETAKL  147 (466)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEESE-EEEEEET---T-EEEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred             hheeccccchHHHHHHhCCCEEEEe-EEEEecC---C-eEEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence                 1  33444556789999877 5666642   2 24577788888  99999999999877643

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.33  E-value=1e-06  Score=86.59  Aligned_cols=99  Identities=17%  Similarity=0.224  Sum_probs=71.5

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc------------------------------------CCHH
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------------------FTPK   82 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~------------------------------------~d~~   82 (356)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+....                                    ++..
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   85 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLA   85 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCHH
Confidence            4689999999999999999999999999999986431100                                    1110


Q ss_pred             ------------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCch
Q 018416           83 ------------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        83 ------------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~  142 (356)
                                  +...+.+.+++.||+++.++.+. ++   .+. ..+.+.+|  +++.+|.+|+|+|.+|...
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~---~~~-~~v~~~~G~~~~i~~d~lIiAtGs~p~~p  154 (470)
T 1dxl_A           86 AMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-VS---PSE-ISVDTIEGENTVVKGKHIIIATGSDVKSL  154 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-EE---TTE-EEECCSSSCCEEEECSEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ec---CCE-EEEEeCCCceEEEEcCEEEECCCCCCCCC
Confidence                        11223456677899999998653 32   222 34556677  6799999999999887653

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.32  E-value=3e-06  Score=80.17  Aligned_cols=52  Identities=12%  Similarity=0.030  Sum_probs=40.8

Q ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           85 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        85 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                      ..+.+.++++|++++++++|++++.++ +. ..|++.+| ++.+|.||+|+|...
T Consensus       158 ~~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~-~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          158 QGYLRGIRRNQGQVLCNHEALEIRRVD-GA-WEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHTTCEEESSCCCCEEEEET-TE-EEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEEEEeC-Ce-EEEEeCCC-EEEcCEEEECCChhH
Confidence            345566778899999999999998743 33 46777777 899999999999643

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.31  E-value=1.8e-06  Score=84.61  Aligned_cols=97  Identities=22%  Similarity=0.193  Sum_probs=70.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------cCCHH--
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFTPK--   82 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----------------------------------~~d~~--   82 (356)
                      .+++|||||+.|+.+|..|++.|.+|+++++. .+...                                   .++.+  
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKV   82 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHHH
Confidence            47999999999999999999999999999987 22100                                   01111  


Q ss_pred             ----------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCCCCCch
Q 018416           83 ----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        83 ----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~  142 (356)
                                +.+.+.+.+++.||+++.++.+. ++   ++. ..+.+.+| +++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-id---~~~-v~V~~~~G~~~i~~d~lViATGs~p~~~  148 (455)
T 1ebd_A           83 QEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF-VD---ANT-VRVVNGDSAQTYTFKNAIIATGSRPIEL  148 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE-EE---TTE-EEEEETTEEEEEECSEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-cc---CCe-EEEEeCCCcEEEEeCEEEEecCCCCCCC
Confidence                      22234566778899999987653 32   232 35666777 6899999999999887653

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.31  E-value=1.8e-06  Score=86.16  Aligned_cols=96  Identities=16%  Similarity=0.194  Sum_probs=70.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC---------------------------------CccC-----CH
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------------------ARLF-----TP   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l---------------------------------~~~~-----d~   81 (356)
                      .+++|||||+.|+.+|..|++.|.+|+|+++.+.+.                                 +...     ..
T Consensus        44 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  123 (523)
T 1mo9_A           44 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIK  123 (523)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhhHH
Confidence            579999999999999999999999999999987321                                 1111     11


Q ss_pred             HHHHHH----H---HHH-----HhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           82 KIASYY----E---EYY-----KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        82 ~~~~~~----~---~~l-----~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                      ++.+.+    .   +.+     ++.||++++...++.+..   .   .+.+. ++++.+|.+|+|+|.+|...
T Consensus       124 ~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~---~---~v~~~-g~~~~~d~lViATGs~p~~p  189 (523)
T 1mo9_A          124 EVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN---H---TVEAA-GKVFKAKNLILAVGAGPGTL  189 (523)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET---T---EEEET-TEEEEBSCEEECCCEECCCC
T ss_pred             HHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC---C---EEEEC-CEEEEeCEEEECCCCCCCCC
Confidence            222222    2   455     788999996667777742   2   34444 77899999999999887653

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.30  E-value=7.7e-07  Score=88.27  Aligned_cols=100  Identities=17%  Similarity=0.174  Sum_probs=72.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------c--C---CHHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------L--F---TPKIASYYEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-------~--~---d~~~~~~~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      .+|+|||+|+.|+.+|..|++. .+|+|+++.+.+...       .  +   ..++...+.+.+ +.||++++++.+.++
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i  186 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV  186 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence            4799999999999999999999 999999998765211       0  1   123334444444 679999999999888


Q ss_pred             EEcCCCcEEEEEeCCCc--EEecCeEEEecCCCCCch
Q 018416          108 DVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       108 ~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  142 (356)
                      ... +..+......+++  ++.+|.+++|+|..|...
T Consensus       187 ~~~-~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~  222 (493)
T 1y56_A          187 FDK-GEYFLVPVVRGDKLIEILAKRVVLATGAIDSTM  222 (493)
T ss_dssp             EEC-SSSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred             EcC-CcEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence            763 3333222224454  689999999999877643

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.29  E-value=5.6e-06  Score=85.46  Aligned_cols=53  Identities=9%  Similarity=0.051  Sum_probs=40.9

Q ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc-EEecCeEEEecCCCC
Q 018416           85 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRP  139 (356)
Q Consensus        85 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~~p  139 (356)
                      ..+.+.+++.|++++++++|+++..++++  ..+++.+|+ ++.+|.||+|+|...
T Consensus       416 ~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~--v~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          416 HALMMLAQQNGMTCHYQHELQRLKRIDSQ--WQLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEECSSS--EEEEEC-CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHHHhCCCEEEeCCeEeEEEEeCCe--EEEEeCCCcEEEECCEEEECCCcch
Confidence            33445566789999999999999874444  367778887 899999999999753

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.29  E-value=6.9e-06  Score=82.48  Aligned_cols=56  Identities=23%  Similarity=0.403  Sum_probs=45.1

Q ss_pred             HHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416           85 SYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        85 ~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      +.+.+.+++. ||+++.+ +|++++.++++.+..+++.+|+++.+|.||.|+|..+..
T Consensus       198 ~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~  254 (550)
T 2e4g_A          198 DFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLL  254 (550)
T ss_dssp             HHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred             HHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence            3345555667 9999999 999998755677778888899899999999999976644

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.29  E-value=5e-06  Score=82.73  Aligned_cols=64  Identities=20%  Similarity=0.277  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-Cc--EEecC-eEEEecCCCC-Cchhhh
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GN--RLPTD-MVVVGIGIRP-NTSLFE  145 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~--~i~~D-~vi~a~G~~p-~~~l~~  145 (356)
                      .+...+.+.+++.||++++++.++++..++++++..|...+ ++  ++.+| .||+|+|--. |.++.+
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~n~~m~~  271 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAYNDKMIE  271 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhhCHHHHH
Confidence            45556667777889999999999999875468877776643 32  58996 9999999655 444443

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.29  E-value=2.7e-06  Score=83.79  Aligned_cols=96  Identities=22%  Similarity=0.263  Sum_probs=69.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------------------------------------cCCH-
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------LFTP-   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-------------------------------------~~d~-   81 (356)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+.+...                                     .++. 
T Consensus         6 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~   85 (478)
T 1v59_A            6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVA   85 (478)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCHH
Confidence            47999999999999999999999999999996543100                                     0111 


Q ss_pred             H-----------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cE------EecCeEEEecCCCCC
Q 018416           82 K-----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NR------LPTDMVVVGIGIRPN  140 (356)
Q Consensus        82 ~-----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~------i~~D~vi~a~G~~p~  140 (356)
                      +           +...+.+.+++.||+++.++.+..    +++. ..+.+.+|  ++      +.+|.+|+|+|.+|.
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~----~~~~-v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~  158 (478)
T 1v59_A           86 NFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE----DETK-IRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT  158 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES----SSSE-EEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc----cCCe-EEEEecCCCcccccccceEEeCEEEECcCCCCC
Confidence            1           112244567788999999876531    2232 35666666  56      999999999998874

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.28  E-value=2.5e-06  Score=83.82  Aligned_cols=99  Identities=22%  Similarity=0.264  Sum_probs=68.9

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc--------------------------cCCc---------cCC-HH
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------------------------CMAR---------LFT-PK   82 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~--------------------------~l~~---------~~d-~~   82 (356)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+-                          ..+.         .++ ..
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSK   83 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCHHH
Confidence            46899999999999999999999999999998730                          0110         011 11


Q ss_pred             HHH-------H-----HHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCch
Q 018416           83 IAS-------Y-----YEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        83 ~~~-------~-----~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~  142 (356)
                      +..       .     ..+.+++. ||+++.+. +..++   .+. ..+.+.+|  +++++|.+|+|+|.+|...
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~-~~~~~---~~~-~~v~~~~g~~~~~~~d~lviAtGs~p~~p  153 (467)
T 1zk7_A           84 LLAQQQARVDELRHAKYEGILGGNPAITVVHGE-ARFKD---DQS-LTVRLNEGGERVVMFDRCLVATGASPAVP  153 (467)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEE-EEEEE---TTE-EEEEETTSSEEEEECSEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEE-EEEcc---CCE-EEEEeCCCceEEEEeCEEEEeCCCCCCCC
Confidence            111       1     12445566 99999874 55553   222 45667778  6799999999999887643

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.28  E-value=7.4e-06  Score=78.91  Aligned_cols=56  Identities=21%  Similarity=0.306  Sum_probs=42.9

Q ss_pred             HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh
Q 018416           87 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF  144 (356)
Q Consensus        87 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~  144 (356)
                      +.+.++++|++++++++|++|.. +++.+..|.++ |+++.+|.||+++|......++
T Consensus       202 l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll  257 (425)
T 3ka7_A          202 LETVISANGGKIHTGQEVSKILI-ENGKAAGIIAD-DRIHDADLVISNLGHAATAVLC  257 (425)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEET-TEEEECSEEEECSCHHHHHHHT
T ss_pred             HHHHHHHcCCEEEECCceeEEEE-ECCEEEEEEEC-CEEEECCEEEECCCHHHHHHhc
Confidence            34556778999999999999987 45666557664 7889999999999965444444

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.27  E-value=6.3e-06  Score=81.47  Aligned_cols=97  Identities=22%  Similarity=0.238  Sum_probs=68.7

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------cCC--
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFT--   80 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------~~d--   80 (356)
                      ..+|+|||||+.|+.+|..|+++|.+|+|+++.+.+...                                    .++  
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  104 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNLQ  104 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCHH
Confidence            368999999999999999999999999999987654110                                    001  


Q ss_pred             ----------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCC
Q 018416           81 ----------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        81 ----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~  140 (356)
                                ..+...+...+++.+|+++.+.... +   +.+. ..+.+.+|  +++.+|.+|+|+|.+|.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~-~---~~~~-~~v~~~~g~~~~~~~d~lViATGs~p~  171 (491)
T 3urh_A          105 KMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKV-L---GQGK-VSVTNEKGEEQVLEAKNVVIATGSDVA  171 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-C---SSSE-EEEECTTSCEEEEECSEEEECCCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-e---cCCE-EEEEeCCCceEEEEeCEEEEccCCCCC
Confidence                      0112234455778899999876432 2   2333 35666677  57999999999998864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.26  E-value=3.9e-07  Score=98.15  Aligned_cols=94  Identities=21%  Similarity=0.346  Sum_probs=73.2

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      +++|+|||||+.|+.+|..|++.|+ +|+|+++.+.+.       +. .++.+..+...+.+++.||++++++.+..   
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence            4689999999999999999999999 799999987542       11 14566777777889999999999987631   


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCC-CCCc
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT  141 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~-~p~~  141 (356)
                         .   .+.+.+++++.+|.||+|+|. +|..
T Consensus       264 ---~---~v~~~~~~~~~~d~vvlAtGa~~p~~  290 (1025)
T 1gte_A          264 ---N---EITLNTLKEEGYKAAFIGIGLPEPKT  290 (1025)
T ss_dssp             ---T---SBCHHHHHHTTCCEEEECCCCCEECC
T ss_pred             ---c---eEEhhhcCccCCCEEEEecCCCCCCC
Confidence               1   133445556889999999998 4754

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.25  E-value=2.6e-06  Score=83.84  Aligned_cols=98  Identities=16%  Similarity=0.165  Sum_probs=70.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------------------------------------cCCH-
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------LFTP-   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-------------------------------------~~d~-   81 (356)
                      .+++|||||+.|+.+|..|++.|.+|+++++.+.+...                                     .++. 
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   86 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNLD   86 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccCHH
Confidence            47999999999999999999999999999998743110                                     0111 


Q ss_pred             H-----------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-C-cEEecCeEEEecCCCCCch
Q 018416           82 K-----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-G-NRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        82 ~-----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-g-~~i~~D~vi~a~G~~p~~~  142 (356)
                      .           +...+.+.+++.||+++.++.+ .+.   .+. ..+.+.+ + +++.+|.+|+|+|.+|...
T Consensus        87 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~~---~~~-~~v~~~~gg~~~~~~d~lViAtGs~p~~p  155 (474)
T 1zmd_A           87 KMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGK-ITG---KNQ-VTATKADGGTQVIDTKNILIATGSEVTPF  155 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-EEE---TTE-EEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Eec---CCE-EEEEecCCCcEEEEeCEEEECCCCCCCCC
Confidence            1           1112356677889999988653 332   222 3466666 4 5799999999999887653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.25  E-value=5.9e-07  Score=89.10  Aligned_cols=99  Identities=20%  Similarity=0.363  Sum_probs=71.1

Q ss_pred             CCcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccC------CccC--CHH--HHHH--------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM------ARLF--TPK--IASY--------------------   86 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l------~~~~--d~~--~~~~--------------------   86 (356)
                      ..+++|||||+.|+.+|..|++.  |.+|+|+++.+.+.      ...+  ...  ..+.                    
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   90 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchHh
Confidence            35799999999999999999887  88999999987531      1000  100  0000                    


Q ss_pred             HH--HH---HHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416           87 YE--EY---YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        87 ~~--~~---l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      ..  +.   +.+.||++++++.+++++.. +.   .|.+.+|+++.+|.+|+|+|.+|..
T Consensus        91 ~~~~~~l~~~~~~gv~~~~g~~v~~id~~-~~---~V~~~~g~~i~yd~lviATGs~p~~  146 (493)
T 1m6i_A           91 YVSAQDLPHIENGGVAVLTGKKVVQLDVR-DN---MVKLNDGSQITYEKCLIATGGTPRS  146 (493)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGG-GT---EEEETTSCEEEEEEEEECCCEEECC
T ss_pred             hcchhhhhhhhcCCeEEEcCCEEEEEECC-CC---EEEECCCCEEECCEEEECCCCCCCC
Confidence            00  00   12468999999999999752 22   4677889999999999999998864

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.24  E-value=1.8e-06  Score=84.59  Aligned_cols=96  Identities=23%  Similarity=0.233  Sum_probs=68.0

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------------cCCH-H---
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------LFTP-K---   82 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------~~d~-~---   82 (356)
                      +++|||+|+.|+.+|..|++.|.+|+++++.+.+...                                  .++. +   
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   82 (455)
T 2yqu_A            3 DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPALMA   82 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHHHH
T ss_pred             CEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHHHH
Confidence            6999999999999999999999999999998643100                                  0111 1   


Q ss_pred             --------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           83 --------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        83 --------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                              +...+.+.+++.||+++.++.+. +   +... ..+.+ +|+++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~-i---~~~~-~~v~~-~g~~~~~d~lviAtG~~p~~~  144 (455)
T 2yqu_A           83 HKDKVVQANTQGVEFLFKKNGIARHQGTARF-L---SERK-VLVEE-TGEELEARYILIATGSAPLIP  144 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-S---SSSE-EEETT-TCCEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e---cCCe-EEEee-CCEEEEecEEEECCCCCCCCC
Confidence                    11223456677899999887532 2   2232 23444 678899999999999887643

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.24  E-value=2.9e-07  Score=90.58  Aligned_cols=91  Identities=14%  Similarity=0.173  Sum_probs=70.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccC--------Ccc-CCHHHHHHHHHHHHhCCCEEEeCCeeeE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCM--------ARL-FTPKIASYYEEYYKSKGVKFVKGTVLSS  106 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l--------~~~-~d~~~~~~~~~~l~~~GV~v~~~~~v~~  106 (356)
                      .+++++|||+|+.|+++|..|++.|  .+|+++++.+.+.        +.. ...++...+.+.+++.||+++.++.+. 
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-   83 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   83 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence            3579999999999999999999998  9999999988765        221 234566777888889999999987662 


Q ss_pred             EEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416          107 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus       107 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                            .   .+.+.+ .++.+|.||+|+|..|
T Consensus        84 ------~---~V~~~~-~~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 ------R---DVTVQE-LQDAYHAVVLSYGAED  106 (460)
T ss_dssp             ------T---TBCHHH-HHHHSSEEEECCCCCE
T ss_pred             ------e---EEEecc-ceEEcCEEEEecCcCC
Confidence                  1   122333 3478999999999875

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.23  E-value=1.1e-05  Score=77.15  Aligned_cols=50  Identities=18%  Similarity=0.218  Sum_probs=38.2

Q ss_pred             HHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           86 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        86 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      .+.+.+++.|++++++++|++++.+ ++.+ .+++.++ ++.+|.||+|+|..
T Consensus       158 ~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v-~v~t~~g-~i~a~~VV~A~G~~  207 (397)
T 2oln_A          158 ALFTLAQAAGATLRAGETVTELVPD-ADGV-SVTTDRG-TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEEE-TTEE-EEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEEc-CCeE-EEEECCC-EEEcCEEEEcCCcC
Confidence            3445566789999999999999864 3333 4666554 79999999999975

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.23  E-value=2.5e-06  Score=84.30  Aligned_cols=93  Identities=17%  Similarity=0.248  Sum_probs=68.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------cCC----
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFT----   80 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----------------------------------~~d----   80 (356)
                      .+|+|||||+.|+.+|..|+++|.+|+|+++.. +...                                   .++    
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~-~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~  105 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEEYR-IGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWEKL  105 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHhCcCEEEEEeCCC-CCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHH
Confidence            479999999999999999999999999999842 1100                                   011    


Q ss_pred             --------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CCcEEecCeEEEecCCCCC
Q 018416           81 --------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        81 --------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~vi~a~G~~p~  140 (356)
                              ..+...+...+++.||+++.+ .+..+.   ..   .+.+. +++++.+|.+++|+|.+|.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~---~~---~v~v~~~~~~~~~d~lviAtG~~p~  167 (484)
T 3o0h_A          106 VAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVD---EH---TLELSVTGERISAEKILIATGAKIV  167 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE---TT---EEEETTTCCEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEee---CC---EEEEecCCeEEEeCEEEEccCCCcc
Confidence                    123334556677889999987 344443   22   34555 7889999999999998876

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.22  E-value=4.7e-06  Score=81.72  Aligned_cols=93  Identities=19%  Similarity=0.204  Sum_probs=66.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC--------------------------------Cc------cCCH
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------------------------------AR------LFTP   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l--------------------------------~~------~~d~   81 (356)
                      .+++|||||+.|+.+|..|++.|.+|+++++. .+.                                ..      .++.
T Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (458)
T 1lvl_A            6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI   84 (458)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEccC-CCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCccCH
Confidence            58999999999999999999999999999984 321                                00      0111


Q ss_pred             -HH-----------HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416           82 -KI-----------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        82 -~~-----------~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                       ++           ...+.+.+++.||+++.++.+. +.   +.   .+.+.+ +++++|.+|+|+|.+|..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~~---~~---~v~v~~-~~~~~d~lviATGs~p~~  148 (458)
T 1lvl_A           85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD---GK---QVEVDG-QRIQCEHLLLATGSSSVE  148 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE---TT---EEEETT-EEEECSEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-cc---CC---EEEEee-EEEEeCEEEEeCCCCCCC
Confidence             11           1123456778999999887643 32   22   355555 789999999999998864

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.21  E-value=5.3e-06  Score=81.81  Aligned_cols=97  Identities=22%  Similarity=0.246  Sum_probs=69.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC---------------------------------------C--cc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------------------------A--RL   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l---------------------------------------~--~~   78 (356)
                      .+++|||||+.|+.+|..|++.|.+|+|+++.+ +.                                       +  ..
T Consensus        12 ~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   90 (479)
T 2hqm_A           12 YDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHLT   90 (479)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGGCC
T ss_pred             CCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccccccCc
Confidence            579999999999999999999999999999874 10                                       0  00


Q ss_pred             CCH------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCCCCch
Q 018416           79 FTP------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        79 ~d~------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  142 (356)
                      ++.            .+...+.+.+++.||+++.++ ++.+   +... ..+.+.+|+  ++.+|.+++|+|.+|...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i---~~~~-~~v~~~~g~~~~~~~d~lviAtGs~p~~p  163 (479)
T 2hqm_A           91 FNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFN---KDGN-VEVQKRDNTTEVYSANHILVATGGKAIFP  163 (479)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEEC---TTSC-EEEEESSSCCEEEEEEEEEECCCEEECCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe---eCCE-EEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence            111            112234456678899999874 4444   2333 346667776  799999999999887654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.21  E-value=2.6e-06  Score=83.76  Aligned_cols=94  Identities=24%  Similarity=0.397  Sum_probs=67.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------cCCH---
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFTP---   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----------------------------------~~d~---   81 (356)
                      .+++|||||+.|+.+|..|++.|.+|+++++.+ +...                                   .++.   
T Consensus         5 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   83 (463)
T 2r9z_A            5 FDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWPRL   83 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC-CCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence            579999999999999999999999999999873 2100                                   0111   


Q ss_pred             ---------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           82 ---------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        82 ---------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                               .+...+.+.+++.||+++.+.. ..+.   ..   .+.+ +|+++.+|.+|+|+|.+|...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~i~---~~---~v~~-~g~~~~~d~lviAtGs~p~~p  145 (463)
T 2r9z_A           84 VAGRDRYIGAINSFWDGYVERLGITRVDGHA-RFVD---AH---TIEV-EGQRLSADHIVIATGGRPIVP  145 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCE-EEEE---TT---EEEE-TTEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEeEE-EEcc---CC---EEEE-CCEEEEcCEEEECCCCCCCCC
Confidence                     1122234456788999998853 3343   22   3444 678899999999999887643

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.21  E-value=5.1e-06  Score=81.48  Aligned_cols=96  Identities=18%  Similarity=0.169  Sum_probs=69.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------cCCH---
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFTP---   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----------------------------------~~d~---   81 (356)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+ +...                                   .++.   
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   82 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGIA   82 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHHH
Confidence            379999999999999999999999999999872 2100                                   0011   


Q ss_pred             ---------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCc
Q 018416           82 ---------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        82 ---------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~  141 (356)
                               .+...+.+.+++.||+++.++.+. +   +++. ..+.+.+|  +++.+|.+|+|+|.+|..
T Consensus        83 ~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-i---d~~~-v~V~~~~G~~~~~~~d~lViAtG~~~~~  148 (464)
T 2a8x_A           83 YDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-A---DANT-LLVDLNDGGTESVTFDNAIIATGSSTRL  148 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-S---SSSE-EEEEETTSCCEEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e---cCCe-EEEEeCCCceEEEEcCEEEECCCCCCCC
Confidence                     111224566778899999887543 2   2333 35667777  689999999999988754

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.21  E-value=5.4e-06  Score=82.20  Aligned_cols=101  Identities=21%  Similarity=0.268  Sum_probs=71.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHC---CCcEEEEeeCCccCC-----------------------------c--------cC
Q 018416           40 GNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMA-----------------------------R--------LF   79 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~---G~~Vtlv~~~~~~l~-----------------------------~--------~~   79 (356)
                      .+++|||||+.|+.+|..|+++   |.+|+|+++.+ +..                             .        .+
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   81 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence            4799999999999999999999   99999999985 100                             0        01


Q ss_pred             CHH------------HHHHHHHHHHhCCCEEEeCCeeeEEEEcC--CCcEEEEEeCCCc--EEecCeEEEecCCCCCch
Q 018416           80 TPK------------IASYYEEYYKSKGVKFVKGTVLSSFDVDS--NGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        80 d~~------------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  142 (356)
                      +..            +...+.+.+++.||+++.++ ++.+...+  ++....+.+.+|+  ++.+|.+++|+|.+|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p  159 (499)
T 1xdi_A           82 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRIL  159 (499)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence            111            22234667788999999886 55443200  0123456667776  799999999999888653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.21  E-value=4e-06  Score=89.72  Aligned_cols=100  Identities=13%  Similarity=0.119  Sum_probs=72.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-------C----CHHHHHHHHHHHHhC-CCEEEeCCeeeEE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-------F----TPKIASYYEEYYKSK-GVKFVKGTVLSSF  107 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-------~----d~~~~~~~~~~l~~~-GV~v~~~~~v~~i  107 (356)
                      .+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+....       +    ..+....+.+.+.+. +|++++++.+.++
T Consensus       129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~i  208 (965)
T 2gag_A          129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFGS  208 (965)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEee
Confidence            579999999999999999999999999999987642111       1    234445555667664 9999999999888


Q ss_pred             EEcCCCcEEEEEe---------------CCCcEEecCeEEEecCCCCCc
Q 018416          108 DVDSNGKVVAVNL---------------RDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       108 ~~~~~g~v~~v~~---------------~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      ..  ++.+..+..               .++.++.+|.+|+|+|.+|..
T Consensus       209 ~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~  255 (965)
T 2gag_A          209 YD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP  255 (965)
T ss_dssp             ET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred             ec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence            63  333222221               112368999999999987654

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.21  E-value=2.2e-06  Score=82.63  Aligned_cols=97  Identities=20%  Similarity=0.212  Sum_probs=69.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCc------------c-CCccC-------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAH------------C-MARLF-------------------------   79 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~------------~-l~~~~-------------------------   79 (356)
                      .+|+|||+|.+|+.+|..|+++  |.+|+|+++.+.            + .+..+                         
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  116 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKTL  116 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSCCC
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCCCC
Confidence            4799999999999999999999  999999998531            2 01000                         


Q ss_pred             --------------------C----------------------------------HHHHHHHHHHHHhCCCEEEeCCeee
Q 018416           80 --------------------T----------------------------------PKIASYYEEYYKSKGVKFVKGTVLS  105 (356)
Q Consensus        80 --------------------d----------------------------------~~~~~~~~~~l~~~GV~v~~~~~v~  105 (356)
                                          +                                  ..+...+.+.+++.|++++.+++|+
T Consensus       117 ~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~  196 (405)
T 3c4n_A          117 EVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAE  196 (405)
T ss_dssp             CEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEE
T ss_pred             cEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence                                0                                  1245566677788999999999998


Q ss_pred             ---------EEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416          106 ---------SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus       106 ---------~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                               ++.. +++.+ .+.+.+| ++.+|.||+|+|...
T Consensus       197 ~~~g~~~~~~i~~-~~~~v-~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          197 LVPGGVRLHRLTV-TNTHQ-IVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             EETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGH
T ss_pred             eccccccccceEe-eCCeE-EEEECCc-EEECCEEEECCCccH
Confidence                     7764 23444 5666665 899999999999754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.21  E-value=2e-06  Score=82.34  Aligned_cols=98  Identities=14%  Similarity=0.151  Sum_probs=71.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccC------CccC----C-HHHHH-HHHHHHHhCCCEEEeCCee
Q 018416           39 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCM------ARLF----T-PKIAS-YYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l------~~~~----d-~~~~~-~~~~~l~~~GV~v~~~~~v  104 (356)
                      ..+++|||+|+.|+.+|..|++.|  .+|+++++.+...      +..+    . .++.. .+.+.+++.||+++.++.+
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v   83 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRV   83 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEE
Confidence            368999999999999999999998  5689998875321      1111    1 12211 2355567889999999999


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      +.+..+ +.   .+.+. +.++.+|.+++|+|.+|..
T Consensus        84 ~~i~~~-~~---~v~~~-~~~~~~d~lviAtG~~p~~  115 (384)
T 2v3a_A           84 TGIDPG-HQ---RIWIG-EEEVRYRDLVLAWGAEPIR  115 (384)
T ss_dssp             CEEEGG-GT---EEEET-TEEEECSEEEECCCEEECC
T ss_pred             EEEECC-CC---EEEEC-CcEEECCEEEEeCCCCcCC
Confidence            988752 22   34454 4579999999999988764

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.20  E-value=1.1e-05  Score=77.71  Aligned_cols=54  Identities=19%  Similarity=0.331  Sum_probs=41.2

Q ss_pred             HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh
Q 018416           87 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF  144 (356)
Q Consensus        87 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~  144 (356)
                      +.+.++++|++++++++|++++. +++.+  + +.+|+++++|.||+++|......++
T Consensus       195 l~~~~~~~G~~i~~~~~V~~i~~-~~~~v--V-~~~g~~~~ad~Vv~a~~~~~~~~ll  248 (421)
T 3nrn_A          195 LERIIMENKGKILTRKEVVEINI-EEKKV--Y-TRDNEEYSFDVAISNVGVRETVKLI  248 (421)
T ss_dssp             HHHHHHTTTCEEESSCCEEEEET-TTTEE--E-ETTCCEEECSEEEECSCHHHHHHHH
T ss_pred             HHHHHHHCCCEEEcCCeEEEEEE-ECCEE--E-EeCCcEEEeCEEEECCCHHHHHHhc
Confidence            34455678999999999999986 44544  4 5678899999999999965444444

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.19  E-value=4.2e-06  Score=82.63  Aligned_cols=97  Identities=19%  Similarity=0.205  Sum_probs=68.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-----------------------------------ccCCHH--
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-----------------------------------RLFTPK--   82 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-----------------------------------~~~d~~--   82 (356)
                      .+++|||+|+.|+.+|..|++.|.+|+|+++.+.+..                                   ..++.+  
T Consensus         7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~~~   86 (482)
T 1ojt_A            7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDML   86 (482)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHH
Confidence            4799999999999999999999999999999654310                                   001111  


Q ss_pred             ----------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC------------cEEecCeEEEecCCCCC
Q 018416           83 ----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG------------NRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        83 ----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g------------~~i~~D~vi~a~G~~p~  140 (356)
                                +...+.+.+++.||+++.++.+. +   +++. ..+.+.+|            .++.+|.+|+|+|.+|.
T Consensus        87 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~---~~~~-v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~  161 (482)
T 1ojt_A           87 RAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-L---DPHH-LEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT  161 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-E---ETTE-EEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-c---cCCE-EEEEecCCcccccccccCcceEEEcCEEEECCCCCCC
Confidence                      11123456678899999887543 2   2232 33444455            67999999999998876


Q ss_pred             c
Q 018416          141 T  141 (356)
Q Consensus       141 ~  141 (356)
                      .
T Consensus       162 ~  162 (482)
T 1ojt_A          162 K  162 (482)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.19  E-value=2e-06  Score=85.31  Aligned_cols=95  Identities=19%  Similarity=0.327  Sum_probs=61.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC---------Cc-------------------------cCC-----
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------AR-------------------------LFT-----   80 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l---------~~-------------------------~~d-----   80 (356)
                      .+++|||||+.|+.+|..|++.|.+|+++++.+ +.         |.                         .++     
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (500)
T 1onf_A            3 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLV   81 (500)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHHH
Confidence            479999999999999999999999999999984 10         00                         011     


Q ss_pred             -------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-------------CcEEecCeEEEecCCCCC
Q 018416           81 -------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-------------GNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        81 -------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-------------g~~i~~D~vi~a~G~~p~  140 (356)
                             ..+...+.+.+++.||+++.++.+ .++   ..   .+.+.+             ++++.+|.+|+|+|.+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~id---~~---~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~  154 (500)
T 1onf_A           82 ERRDKYIQRLNNIYRQNLSKDKVDLYEGTAS-FLS---EN---RILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV  154 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCCC-CC--------------------------------CBSSEEECCCCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Eee---CC---EEEEEeccccccccccCCCceEEEeCEEEECCCCCCC
Confidence                   112223445567889999988643 232   11   222322             567999999999999887


Q ss_pred             ch
Q 018416          141 TS  142 (356)
Q Consensus       141 ~~  142 (356)
                      ..
T Consensus       155 ~p  156 (500)
T 1onf_A          155 FP  156 (500)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.19  E-value=5.1e-06  Score=81.27  Aligned_cols=94  Identities=19%  Similarity=0.352  Sum_probs=67.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------cCCH--
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFTP--   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------~~d~--   81 (356)
                      .+++|||||+.|+.+|..|++.|.+|+++++.+ +...                                    .++.  
T Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (450)
T 1ges_A            5 YDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWET   83 (450)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC-CCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            579999999999999999999999999999873 2100                                    0110  


Q ss_pred             ----------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           82 ----------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        82 ----------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                                .+...+...+++.||+++.++. +.++   ..   .+.+ +|+++.+|.+++|+|.+|...
T Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~i~---~~---~v~~-~g~~~~~d~lviAtGs~p~~p  146 (450)
T 1ges_A           84 LIASRTAYIDRIHTSYENVLGKNNVDVIKGFA-RFVD---AK---TLEV-NGETITADHILIATGGRPSHP  146 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCC-EEEE---TT---EEEE-TTEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEec---CC---EEEE-CCEEEEeCEEEECCCCCCCCC
Confidence                      1112233456778999998864 3443   22   3444 678899999999999887643

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.18  E-value=1.8e-06  Score=88.81  Aligned_cols=87  Identities=21%  Similarity=0.320  Sum_probs=67.2

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----cC----C-HHHHHHHHHHHHhCCCEEEeCCeeeEEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----LF----T-PKIASYYEEYYKSKGVKFVKGTVLSSFD  108 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----~~----d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~  108 (356)
                      .++|+|||||+.|+.+|..|+++|.+|+|+++.+.+...     .+    + .+....+.+.+++.||++++++.++.  
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--  450 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA--  450 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH--
Confidence            478999999999999999999999999999998765211     01    1 23455667778889999999876431  


Q ss_pred             EcCCCcEEEEEeCCCcEE-ecCeEEEecCCCCCch
Q 018416          109 VDSNGKVVAVNLRDGNRL-PTDMVVVGIGIRPNTS  142 (356)
Q Consensus       109 ~~~~g~v~~v~~~~g~~i-~~D~vi~a~G~~p~~~  142 (356)
                                     ..+ .+|.||+|+|.+|...
T Consensus       451 ---------------~~~~~~d~lviAtG~~p~~~  470 (671)
T 1ps9_A          451 ---------------DQLQAFDETILASGIVPRTP  470 (671)
T ss_dssp             ---------------SSSCCSSEEEECCCEEECCC
T ss_pred             ---------------HHhhcCCEEEEccCCCcCCC
Confidence                           123 8999999999987653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.18  E-value=2.7e-06  Score=83.57  Aligned_cols=94  Identities=19%  Similarity=0.221  Sum_probs=67.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC----------------------------------ccCCHH-H-
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------------------RLFTPK-I-   83 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~----------------------------------~~~d~~-~-   83 (356)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+ +..                                  ..++.. + 
T Consensus         7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   85 (464)
T 2eq6_A            7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKLG   85 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHHHH
Confidence            579999999999999999999999999999875 100                                  001111 1 


Q ss_pred             ----------HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           84 ----------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        84 ----------~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                                ...+.+.+++.||+++.++.+. +.   ..   .+.+. |+++++|.+|+|+|.+|...
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~---~~---~v~v~-g~~~~~d~lViATGs~p~~p  146 (464)
T 2eq6_A           86 GWRDQVVKKLTGGVGTLLKGNGVELLRGFARL-VG---PK---EVEVG-GERYGAKSLILATGSEPLEL  146 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCEEE-EE---TT---EEEET-TEEEEEEEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEE-cc---CC---EEEEc-cEEEEeCEEEEcCCCCCCCC
Confidence                      1113455677899999987543 32   22   34444 67899999999999887643

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.18  E-value=3.1e-07  Score=90.31  Aligned_cols=90  Identities=18%  Similarity=0.168  Sum_probs=69.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHH-C------CCcEEEEeeCCccCC--------c-cCCHHHHHHHHHHHHhCCCEEEeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVI-N------KINVTMVFPEAHCMA--------R-LFTPKIASYYEEYYKSKGVKFVKG  101 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~-~------G~~Vtlv~~~~~~l~--------~-~~d~~~~~~~~~~l~~~GV~v~~~  101 (356)
                      .+++|+|||+|+.|+.+|..|++ .      |.+|+|+++.+.+..        . ....++...+.+.+++.||+++.+
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~   81 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGN   81 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEES
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEee
Confidence            35789999999999999999999 7      999999999877542        1 123456777788888899999988


Q ss_pred             CeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416          102 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus       102 ~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      ..+      + .   .+.+.++ ++.+|.||+|+|..
T Consensus        82 v~v------~-~---~v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           82 VVV------G-E---HVQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             CCB------T-T---TBCHHHH-HHHSSEEEECCCCC
T ss_pred             EEE------C-C---EEEECCC-eEeCCEEEEeeCCC
Confidence            553      1 1   1334444 57899999999986

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.17  E-value=2.6e-05  Score=77.75  Aligned_cols=56  Identities=11%  Similarity=0.207  Sum_probs=44.1

Q ss_pred             HHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416           85 SYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        85 ~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      +.+.+.+++ .||+++.+ +|++++.++++.+..+++.+|.++.+|.||.|.|..+..
T Consensus       179 ~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~  235 (526)
T 2pyx_A          179 QLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL  235 (526)
T ss_dssp             HHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred             HHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            334455566 89999999 699998755666667888888889999999999987653

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.17  E-value=1.1e-05  Score=84.93  Aligned_cols=55  Identities=27%  Similarity=0.432  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                      +...+.+.++++|++++.++.|++++. +++.+..+.+.+| ++.+|.||+|+|...
T Consensus       153 l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          153 AVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHcCCEEECCceEEEEEE-eCCEEEEEEECCc-EEECCEEEECCccch
Confidence            344556677788999999999999986 3555656777777 799999999999653

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.17  E-value=8.1e-07  Score=91.76  Aligned_cols=89  Identities=18%  Similarity=0.216  Sum_probs=69.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC---------cc-CCHHHHHHHHHHHHhC-CCEEEeCCeeeE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------RL-FTPKIASYYEEYYKSK-GVKFVKGTVLSS  106 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~---------~~-~d~~~~~~~~~~l~~~-GV~v~~~~~v~~  106 (356)
                      ..++|+|||||+.|+++|..|+++|++|+|+++.+.+..         .. ...++...+.+.+++. ||++++++.++ 
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-  468 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPMT-  468 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCCCC-
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCeec-
Confidence            357899999999999999999999999999999875421         10 1245667777888887 99999886532 


Q ss_pred             EEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416          107 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus       107 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                                   ..+++++.+|.+++|+|.+|.
T Consensus       469 -------------~~~~~~~~~d~lvlAtG~~~~  489 (690)
T 3k30_A          469 -------------GDDIVEFGFEHVITATGATWR  489 (690)
T ss_dssp             -------------HHHHHHTTCCEEEECCCEEEC
T ss_pred             -------------HHHHhhcCCCEEEEcCCCccc
Confidence                         123456889999999998854

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.17  E-value=1.7e-05  Score=78.70  Aligned_cols=56  Identities=23%  Similarity=0.370  Sum_probs=45.3

Q ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416           85 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        85 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      +.+.+.+++.||+++.+ +|++++.++++.+..+++.+|+++.+|.||.|.|.....
T Consensus       177 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~  232 (511)
T 2weu_A          177 RYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLL  232 (511)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCC
T ss_pred             HHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            34455666789999999 999998756677777888899899999999999986543

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.12  E-value=2.7e-06  Score=83.46  Aligned_cols=93  Identities=17%  Similarity=0.245  Sum_probs=66.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC---------------------------c--------cCCH---
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------------------R--------LFTP---   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~---------------------------~--------~~d~---   81 (356)
                      .+|+|||+|+.|+.+|..|+++|.+|+++++.. +..                           .        .++.   
T Consensus         6 ~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~~-~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (463)
T 4dna_A            6 YDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFR-YGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKL   84 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHHHH
Confidence            479999999999999999999999999999842 110                           0        0111   


Q ss_pred             ---------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe-CCCcEEecCeEEEecCCCCC
Q 018416           82 ---------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        82 ---------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~-~~g~~i~~D~vi~a~G~~p~  140 (356)
                               .+...+.+.+++.||+++.+ .+..+   +..   .+.+ .+++++.+|.+++|+|.+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i---~~~---~v~~~~~~~~~~~d~lviAtG~~p~  146 (463)
T 4dna_A           85 VAAKEQEIARLEGLYRKGLANAGAEILDT-RAELA---GPN---TVKLLASGKTVTAERIVIAVGGHPS  146 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEES---SSS---EEEETTTTEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEe---eCC---EEEEecCCeEEEeCEEEEecCCCcc
Confidence                     22333455667789999987 33333   222   3455 57788999999999998877

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.09  E-value=2.5e-05  Score=77.46  Aligned_cols=55  Identities=15%  Similarity=0.082  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe---CCCc--EEecCeEEEecCCCC
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIRP  139 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~vi~a~G~~p  139 (356)
                      +...+.+.++++|++++++++|+++..++  .+..+++   .+|+  ++.+|.||.|+|...
T Consensus       151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          151 LVLANAQMVVRKGGEVLTRTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            44556667778899999999999998633  4455666   3565  799999999999754

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.08  E-value=1.1e-05  Score=79.33  Aligned_cols=97  Identities=21%  Similarity=0.237  Sum_probs=68.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC----------------------------------Cc--------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------------AR--------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l----------------------------------~~--------   77 (356)
                      -+++|||+|+.|+.+|..|++.|.+|+|+++.+.+.                                  ..        
T Consensus         4 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~   83 (476)
T 3lad_A            4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEV   83 (476)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            479999999999999999999999999999985110                                  00        


Q ss_pred             cCC------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCc
Q 018416           78 LFT------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        78 ~~d------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~  141 (356)
                      .++            ..+...+...+++.||+++.+.... +   +.+. ..+.+.+|  +++.+|.+|+|+|.+|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~-~---~~~~-~~v~~~~g~~~~~~~d~lvlAtG~~p~~  156 (476)
T 3lad_A           84 AIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKL-L---AGKK-VEVTAADGSSQVLDTENVILASGSKPVE  156 (476)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEE-C---STTC-EEEECTTSCEEEECCSCEEECCCEEECC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e---cCCE-EEEEcCCCceEEEEcCEEEEcCCCCCCC
Confidence            001            0112223455677899999876432 2   2333 35666777  579999999999988763

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.08  E-value=5.1e-06  Score=82.24  Aligned_cols=98  Identities=23%  Similarity=0.261  Sum_probs=66.6

Q ss_pred             CcEEEECCchHHHHHHHHHHH-CCCcEEEEee--------CCccCCc---------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVI-NKINVTMVFP--------EAHCMAR---------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~-~G~~Vtlv~~--------~~~~l~~---------------------------------   77 (356)
                      .+++|||||+.|+.+|..|++ .|.+|+|+++        .+.+...                                 
T Consensus         4 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~   83 (490)
T 1fec_A            4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELD   83 (490)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEECC
T ss_pred             ccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcccC
Confidence            479999999999999999999 9999999992        2222110                                 


Q ss_pred             ----cCCH-HH-----------HHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEe---CCC---cEEecCeEEEe
Q 018416           78 ----LFTP-KI-----------ASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNL---RDG---NRLPTDMVVVG  134 (356)
Q Consensus        78 ----~~d~-~~-----------~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~---~~g---~~i~~D~vi~a  134 (356)
                          .++. ++           ...+.+.+++. ||+++.++ ++.+.   ... ..+..   .+|   +++.+|.+|+|
T Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~---~~~-v~v~~~~~~~g~~~~~~~~d~lviA  158 (490)
T 1fec_A           84 RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGF-GALQD---NHT-VLVRESADPNSAVLETLDTEYILLA  158 (490)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESE-EEEEE---TTE-EEEESSSSTTSCEEEEEEEEEEEEC
T ss_pred             CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeE-EEEee---CCE-EEEEeeccCCCCceEEEEcCEEEEe
Confidence                0121 11           12334456778 99999886 55553   222 22332   266   67999999999


Q ss_pred             cCCCCCch
Q 018416          135 IGIRPNTS  142 (356)
Q Consensus       135 ~G~~p~~~  142 (356)
                      +|.+|...
T Consensus       159 tGs~p~~p  166 (490)
T 1fec_A          159 TGSWPQHL  166 (490)
T ss_dssp             CCEEECCC
T ss_pred             CCCCCCCC
Confidence            99887643

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.06  E-value=2.3e-05  Score=77.26  Aligned_cols=98  Identities=18%  Similarity=0.273  Sum_probs=71.0

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------------Ccc-----------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------------ARL-----------------------------   78 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------------~~~-----------------------------   78 (356)
                      .|+|||+|..|+.+|..|++.|.+|+|+++...-.             ...                             
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~   80 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE   80 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence            48999999999999999999999999999872000             000                             


Q ss_pred             --------------C----------------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-
Q 018416           79 --------------F----------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-  121 (356)
Q Consensus        79 --------------~----------------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-  121 (356)
                                    +                      ..++.+.+.+.+++.||+++.++.+ ++.. +++.+..+... 
T Consensus        81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~-~~~~v~Gv~v~~  158 (472)
T 2e5v_A           81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRV-KDGKVTGFVTEK  158 (472)
T ss_dssp             HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEE-ETTEEEEEEETT
T ss_pred             HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEE-eCCEEEEEEEEe
Confidence                          0                      0133455556667789999999999 9875 35666555543 


Q ss_pred             CCcEEecCeEEEecCCCCC
Q 018416          122 DGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus       122 ~g~~i~~D~vi~a~G~~p~  140 (356)
                      ++.++.+|.||+|+|..+.
T Consensus       159 ~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          159 RGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             TEEECCCSEEEECCCCCGG
T ss_pred             CCCeEEeeeEEECCCCCcc
Confidence            3335789999999997653

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.05  E-value=4.5e-06  Score=82.79  Aligned_cols=96  Identities=26%  Similarity=0.282  Sum_probs=65.4

Q ss_pred             CcEEEECCchHHHHHHHHHHH-CCCcEEEEee--------CCccCCc---------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVI-NKINVTMVFP--------EAHCMAR---------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~-~G~~Vtlv~~--------~~~~l~~---------------------------------   77 (356)
                      .+++|||||+.|+.+|..|++ .|.+|+|+++        .+.+...                                 
T Consensus         8 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~   87 (495)
T 2wpf_A            8 FDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEFD   87 (495)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEECC
T ss_pred             cCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCcccC
Confidence            479999999999999999999 9999999992        2222100                                 


Q ss_pred             ----cCCH-HHH-----------HHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeC---C-----CcEEecCeEE
Q 018416           78 ----LFTP-KIA-----------SYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLR---D-----GNRLPTDMVV  132 (356)
Q Consensus        78 ----~~d~-~~~-----------~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~---~-----g~~i~~D~vi  132 (356)
                          .++. ++.           ..+...|++. ||+++.++ ++.+.   ..   .+.+.   +     ++++.+|.+|
T Consensus        88 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~---~~---~v~v~~~~~~~~~~~~~~~~d~lV  160 (495)
T 2wpf_A           88 GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGW-GSLES---KN---VVVVRETADPKSAVKERLQADHIL  160 (495)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESE-EEEEE---TT---EEEEESSSSTTSCEEEEEEEEEEE
T ss_pred             CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeE-EEEee---CC---EEEEeecCCccCCCCeEEEcCEEE
Confidence                0111 111           1233456677 99999885 44443   22   23333   4     6789999999


Q ss_pred             EecCCCCCch
Q 018416          133 VGIGIRPNTS  142 (356)
Q Consensus       133 ~a~G~~p~~~  142 (356)
                      +|+|.+|...
T Consensus       161 iATGs~p~~p  170 (495)
T 2wpf_A          161 LATGSWPQMP  170 (495)
T ss_dssp             ECCCEEECCC
T ss_pred             EeCCCCcCCC
Confidence            9999887643

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.00  E-value=2.5e-05  Score=78.69  Aligned_cols=53  Identities=23%  Similarity=0.185  Sum_probs=40.7

Q ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC---C--cEEecCeEEEecCCC
Q 018416           85 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIR  138 (356)
Q Consensus        85 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G~~  138 (356)
                      ..+.+.++++|++++++++|+++.. +++.+..+++.+   |  .++.+|.||.|+|..
T Consensus       174 ~~L~~~a~~~G~~i~~~~~V~~l~~-~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~  231 (561)
T 3da1_A          174 LEIMKEAVARGAVALNYMKVESFIY-DQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPW  231 (561)
T ss_dssp             HHHHHHHHHTTCEEEESEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHcCCEEEcCCEEEEEEE-cCCeEEEEEEEEcCCCceEEEECCEEEECCCcc
Confidence            3445567788999999999999987 456665666643   3  468999999999964

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.00  E-value=1.9e-05  Score=76.79  Aligned_cols=54  Identities=24%  Similarity=0.433  Sum_probs=41.8

Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEc--------------CCCcEEEEEeCCCcEE--ecCeEEEecCCC
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVD--------------SNGKVVAVNLRDGNRL--PTDMVVVGIGIR  138 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~--------------~~g~v~~v~~~~g~~i--~~D~vi~a~G~~  138 (356)
                      ...+.+.++++|++++++++|++++.+              +++.+..+.+.+| ++  .+|.||+|+|..
T Consensus       184 ~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~  253 (448)
T 3axb_A          184 VDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVW  253 (448)
T ss_dssp             HHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcC
Confidence            344556677889999999999999762              2445556777777 68  999999999965

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.00  E-value=7e-06  Score=80.84  Aligned_cols=97  Identities=18%  Similarity=0.301  Sum_probs=67.6

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-----------------------------------ccCC---
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-----------------------------------RLFT---   80 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-----------------------------------~~~d---   80 (356)
                      ..+|+|||+|+.|+.+|..|+++|.+|+|+++.. +..                                   ..++   
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   98 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRV   98 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            3589999999999999999999999999999764 100                                   0011   


Q ss_pred             ---------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           81 ---------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        81 ---------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                               ..+...+...+++.||+++.+.. ..+   +... ..+. .+++++.+|.+|+|+|.+|...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~---~~~~-~~v~-~~g~~~~~d~lviAtG~~p~~p  163 (478)
T 3dk9_A           99 IKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHA-AFT---SDPK-PTIE-VSGKKYTAPHILIATGGMPSTP  163 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCE-EEC---SCSS-CEEE-ETTEEEECSCEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEE-EEe---eCCe-EEEE-ECCEEEEeeEEEEccCCCCCCC
Confidence                     11223345567788999998753 222   1221 1233 4678899999999999887653

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.99  E-value=3.1e-06  Score=87.98  Aligned_cols=88  Identities=18%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc--------CC--HHHHHHHHHHHHhC------CCEEEeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL--------FT--PKIASYYEEYYKSK------GVKFVKGT  102 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~--------~d--~~~~~~~~~~l~~~------GV~v~~~~  102 (356)
                      .++|+|||||+.|+++|..|+++|++|||+++.+.+....        +.  ..+.+.+.+.++..      +|++..++
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~~~  468 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQK  468 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECSCC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEeCe
Confidence            5789999999999999999999999999999987653210        10  22333333333332      55554332


Q ss_pred             eeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416          103 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus       103 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      .              +.+.++.++.+|.||+|+|.+|.
T Consensus       469 ~--------------v~~~~~~~~~~d~vviAtG~~~~  492 (729)
T 1o94_A          469 P--------------MTADDVLQYGADKVIIATGARWN  492 (729)
T ss_dssp             C--------------CCHHHHHTSCCSEEEECCCEEEC
T ss_pred             E--------------EehhhccccCCCEEEEcCCCCcc
Confidence            1              22334556889999999998854

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.99  E-value=3.4e-06  Score=80.52  Aligned_cols=88  Identities=17%  Similarity=0.164  Sum_probs=68.8

Q ss_pred             CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccC-----------------------Cc-----------------
Q 018416           40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM-----------------------AR-----------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l-----------------------~~-----------------   77 (356)
                      ++|+|||||+.|+.+|..|++.  |.+|+|+|+.+.+-                       ..                 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH   80 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence            3699999999999999999999  99999999876540                       00                 


Q ss_pred             --------------cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           78 --------------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        78 --------------~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                                    ....++.+.+.+.+++.|++++++++|++++.  .           +++.+|.||.|.|..+.
T Consensus        81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~-----------~~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--L-----------PLADYDLVVLANGVNHK  144 (381)
T ss_dssp             SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--C-----------CGGGCSEEEECCGGGGG
T ss_pred             CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--c-----------ccccCCEEEECCCCCch
Confidence                          00145667778888888999999999887742  0           13689999999997653

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.96  E-value=2.6e-05  Score=77.69  Aligned_cols=98  Identities=14%  Similarity=0.126  Sum_probs=66.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC--------ccCC-----------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA--------HCMA-----------------------------------   76 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~--------~~l~-----------------------------------   76 (356)
                      -+|+|||+|+.|+.+|..|++.|.+|+|+++.+        .+..                                   
T Consensus        33 ~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~~~  112 (519)
T 3qfa_A           33 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEE  112 (519)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            479999999999999999999999999999843        1100                                   


Q ss_pred             -ccCCHH------------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCCCCc
Q 018416           77 -RLFTPK------------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        77 -~~~d~~------------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~  141 (356)
                       ..++..            +...+...+++.||+++.+. ...+.   ... ..+...+|+  ++.+|.+|+|+|.+|..
T Consensus       113 ~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~-a~~~d---~~~-v~v~~~~g~~~~i~~d~lViATGs~p~~  187 (519)
T 3qfa_A          113 TVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY-GQFIG---PHR-IKATNNKGKEKIYSAERFLIATGERPRY  187 (519)
T ss_dssp             SCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEE---TTE-EEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEee---CCE-EEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence             001111            11122345677899998764 33332   222 345666664  79999999999988765


Q ss_pred             h
Q 018416          142 S  142 (356)
Q Consensus       142 ~  142 (356)
                      .
T Consensus       188 p  188 (519)
T 3qfa_A          188 L  188 (519)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.95  E-value=2.6e-05  Score=78.27  Aligned_cols=97  Identities=20%  Similarity=0.300  Sum_probs=69.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------------   77 (356)
                      .+|+|||+|++|+-+|..|++.|.+|+|+|+.+.+...                                          
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~  106 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV  106 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence            37999999999999999999999999999987532100                                          


Q ss_pred             ---c---C---------------------C-HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC---C--c
Q 018416           78 ---L---F---------------------T-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--N  124 (356)
Q Consensus        78 ---~---~---------------------d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~  124 (356)
                         .   +                     + ..+.+.+.+.+++.   +++++++++++.++++ + .+++.+   |  +
T Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~-v-~v~~~~~~~G~~~  181 (549)
T 2r0c_A          107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDH-V-RATITDLRTGATR  181 (549)
T ss_dssp             TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSC-E-EEEEEETTTCCEE
T ss_pred             CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCE-E-EEEEEECCCCCEE
Confidence               0   0                     0 12334455555554   8889999999875444 3 344443   6  4


Q ss_pred             EEecCeEEEecCCCCCc
Q 018416          125 RLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       125 ~i~~D~vi~a~G~~p~~  141 (356)
                      ++.+|+||.|.|.+...
T Consensus       182 ~i~a~~vVgADG~~S~v  198 (549)
T 2r0c_A          182 AVHARYLVACDGASSPT  198 (549)
T ss_dssp             EEEEEEEEECCCTTCHH
T ss_pred             EEEeCEEEECCCCCcHH
Confidence            79999999999987643

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.95  E-value=3e-05  Score=79.27  Aligned_cols=102  Identities=22%  Similarity=0.267  Sum_probs=75.8

Q ss_pred             CcEEEECCchHHHHHHHHHHH-CCCcEEEEeeCCccCCc-----------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVI-NKINVTMVFPEAHCMAR-----------------------------------------   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~-~G~~Vtlv~~~~~~l~~-----------------------------------------   77 (356)
                      .+|+|||||++|+-+|..|++ .|.+|+|+|+.+.+...                                         
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  112 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG  112 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence            369999999999999999999 99999999986432100                                         


Q ss_pred             ------------------------cCC-HHHHHHHHHHHHhCCC--EEEeCCeeeEEEEcCC--CcEEEEEeC------C
Q 018416           78 ------------------------LFT-PKIASYYEEYYKSKGV--KFVKGTVLSSFDVDSN--GKVVAVNLR------D  122 (356)
Q Consensus        78 ------------------------~~d-~~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~--g~v~~v~~~------~  122 (356)
                                              .++ ..+.+.+.+.+++.|+  +++.++++++++.+++  +....+++.      +
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~  192 (639)
T 2dkh_A          113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA  192 (639)
T ss_dssp             STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred             CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence                                    001 2455667778888877  9999999999987542  212345443      4


Q ss_pred             C--cEEecCeEEEecCCCCCc
Q 018416          123 G--NRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       123 g--~~i~~D~vi~a~G~~p~~  141 (356)
                      |  +++.+|+||.|.|.+...
T Consensus       193 G~~~~i~a~~vVgADG~~S~v  213 (639)
T 2dkh_A          193 GQIETVQARYVVGCDGARSNV  213 (639)
T ss_dssp             TCEEEEEEEEEEECCCTTCHH
T ss_pred             CCeEEEEeCEEEECCCcchHH
Confidence            6  579999999999987643

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.90  E-value=7.1e-05  Score=75.98  Aligned_cols=97  Identities=12%  Similarity=0.182  Sum_probs=71.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccCC--------------c-----------------cCC------
Q 018416           40 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMA--------------R-----------------LFT------   80 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l~--------------~-----------------~~d------   80 (356)
                      -.|+|||+|..|+-+|..|++.|  .+|+|+++.+....              .                 ..+      
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~   85 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDY   85 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            37999999999999999999999  99999998643200              0                 000      


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHhCC-CEEEeCCeeeEEEEcC
Q 018416           81 ------------------------------------------------PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDS  111 (356)
Q Consensus        81 ------------------------------------------------~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~  111 (356)
                                                                      ..+...+.+.+++.| |+++.++.++++.. +
T Consensus        86 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~-~  164 (602)
T 1kf6_A           86 FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV-D  164 (602)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE-E
T ss_pred             HHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-e
Confidence                                                            123344445556678 99999999999986 3


Q ss_pred             CCcEEEEE---eCCCc--EEecCeEEEecCC
Q 018416          112 NGKVVAVN---LRDGN--RLPTDMVVVGIGI  137 (356)
Q Consensus       112 ~g~v~~v~---~~~g~--~i~~D~vi~a~G~  137 (356)
                      ++.+..+.   +.+|+  .+.++.||+|+|.
T Consensus       165 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  195 (602)
T 1kf6_A          165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGG  195 (602)
T ss_dssp             TTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred             CCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            56555443   25676  6899999999995

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.89  E-value=7.6e-05  Score=73.65  Aligned_cols=98  Identities=19%  Similarity=0.156  Sum_probs=65.8

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC--------ccC------------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA--------HCM------------------------------------   75 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~--------~~l------------------------------------   75 (356)
                      -.++|||+|+.|+.+|..|++.|.+|+|+++.+        .+.                                    
T Consensus         7 ~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~~~   86 (488)
T 3dgz_A            7 FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVAQ   86 (488)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            379999999999999999999999999999621        110                                    


Q ss_pred             CccCCH-H-----------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCc
Q 018416           76 ARLFTP-K-----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        76 ~~~~d~-~-----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~  141 (356)
                      +..++. .           +...+...+++.+|+++.+. +..+   +... ..+...+|  .++.+|.+|+|+|.+|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~-~~~~---~~~~-v~v~~~~g~~~~~~~d~lViATGs~p~~  161 (488)
T 3dgz_A           87 PVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK-ASFV---DEHT-VRGVDKGGKATLLSAEHIVIATGGRPRY  161 (488)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCE-EEES---SSSE-EEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc---cCCe-EEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence            001221 1           11123345677899998654 2222   2222 35666666  479999999999988764


Q ss_pred             h
Q 018416          142 S  142 (356)
Q Consensus       142 ~  142 (356)
                      .
T Consensus       162 p  162 (488)
T 3dgz_A          162 P  162 (488)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.87  E-value=7.8e-05  Score=73.41  Aligned_cols=98  Identities=23%  Similarity=0.328  Sum_probs=65.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc----------------------------------------c-CC--
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH----------------------------------------C-MA--   76 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~----------------------------------------~-l~--   76 (356)
                      -+++|||+|+.|+.+|..|++.|.+|+|+++.+.                                        + +.  
T Consensus        10 ~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~~   89 (483)
T 3dgh_A           10 YDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVD   89 (483)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCcccC
Confidence            4799999999999999999999999999983110                                        0 00  


Q ss_pred             --ccCCH-HH-----------HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc-EEecCeEEEecCCCCCc
Q 018416           77 --RLFTP-KI-----------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNT  141 (356)
Q Consensus        77 --~~~d~-~~-----------~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~~p~~  141 (356)
                        ..++. .+           ...+...+++.+|+++.+.. .-+.   ... ..+.+.+|+ ++.+|.+|+|+|.+|..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~---~~~-v~v~~~~g~~~~~~d~lviATGs~p~~  164 (483)
T 3dgh_A           90 DKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLG-SFVD---SHT-LLAKLKSGERTITAQTFVIAVGGRPRY  164 (483)
T ss_dssp             CCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEE-EEEE---TTE-EEEECTTCCEEEEEEEEEECCCEEECC
T ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEcc---CCE-EEEEeCCCeEEEEcCEEEEeCCCCcCC
Confidence              01121 11           11223446778999987643 2221   222 356666774 79999999999988765


Q ss_pred             h
Q 018416          142 S  142 (356)
Q Consensus       142 ~  142 (356)
                      .
T Consensus       165 p  165 (483)
T 3dgh_A          165 P  165 (483)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.87  E-value=0.00014  Score=73.58  Aligned_cols=97  Identities=15%  Similarity=0.149  Sum_probs=71.7

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC--------------Cc-------------------cCCH------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------------AR-------------------LFTP------   81 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l--------------~~-------------------~~d~------   81 (356)
                      .|+|||+|..|+-+|..|++.|.+|+|+++.+...              ..                   ..++      
T Consensus         9 DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~~   88 (588)
T 2wdq_A            9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYM   88 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            69999999999999999999999999999864320              00                   0011      


Q ss_pred             -------------------------------------------------------HHHHHHHHHHHhCCCEEEeCCeeeE
Q 018416           82 -------------------------------------------------------KIASYYEEYYKSKGVKFVKGTVLSS  106 (356)
Q Consensus        82 -------------------------------------------------------~~~~~~~~~l~~~GV~v~~~~~v~~  106 (356)
                                                                             .+...+.+.+++.||++++++.+++
T Consensus        89 ~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v~~  168 (588)
T 2wdq_A           89 CKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALD  168 (588)
T ss_dssp             HHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTTCEEEETEEEEE
T ss_pred             HHhHHHHHHHHHHcCCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEE
Confidence                                                                   1222344555667999999999999


Q ss_pred             EEEcCCCcEEEEEe---CCCc--EEecCeEEEecCC
Q 018416          107 FDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGI  137 (356)
Q Consensus       107 i~~~~~g~v~~v~~---~~g~--~i~~D~vi~a~G~  137 (356)
                      +..++++++..+..   .+|+  .+.++.||+|+|.
T Consensus       169 L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg  204 (588)
T 2wdq_A          169 LVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG  204 (588)
T ss_dssp             EEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             EEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCC
Confidence            98743666666654   4565  5899999999995

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.83  E-value=8.2e-05  Score=77.65  Aligned_cols=63  Identities=19%  Similarity=0.270  Sum_probs=48.1

Q ss_pred             CCCCCCeEEeCCHHHHHHHHHHHhcC---------------------CCCcEEEECCchHHHHHHHHHHHCCCcEEEEee
Q 018416           12 GSDAENVCYLRDLADANRLVNVMKSC---------------------SGGNAVVIGGGYIGMECAASLVINKINVTMVFP   70 (356)
Q Consensus        12 G~~~~~v~~l~~~~da~~i~~~l~~~---------------------~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~   70 (356)
                      +.+.++++++++..+...++..+...                     ...+|+|||+|..|+.+|..|++.|.+|+|+|+
T Consensus       288 ~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~  367 (776)
T 4gut_A          288 HIIVRGLVRIRCVQEVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEA  367 (776)
T ss_dssp             GCCCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTCCCCGGGCSSCGGGTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred             hcccccccccccHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            44556666666667777766655321                     135899999999999999999999999999998


Q ss_pred             CCcc
Q 018416           71 EAHC   74 (356)
Q Consensus        71 ~~~~   74 (356)
                      .+++
T Consensus       368 ~~~~  371 (776)
T 4gut_A          368 KDRI  371 (776)
T ss_dssp             SSSS
T ss_pred             ccce
Confidence            6544

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.75  E-value=0.00015  Score=73.16  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ...|+|||||.+|+-+|..|+++|.+|+|+|+.+
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4589999999999999999999999999999753

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.73  E-value=0.0001  Score=74.55  Aligned_cols=99  Identities=12%  Similarity=0.187  Sum_probs=65.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC-Cc-------cC----------------------------------C
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AH-------CM----------------------------------A   76 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~-~~-------~l----------------------------------~   76 (356)
                      ..+++|||+|+.|+.+|..|+++|.+|+++++. +.       +.                                  +
T Consensus       107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~~~  186 (598)
T 2x8g_A          107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSLD  186 (598)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             cccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCcccc
Confidence            457999999999999999999999999999963 21       00                                  0


Q ss_pred             c---cCC-HHHHHHH-----------HHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCC
Q 018416           77 R---LFT-PKIASYY-----------EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRP  139 (356)
Q Consensus        77 ~---~~d-~~~~~~~-----------~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p  139 (356)
                      .   ..+ +++.+.+           ...+++.||+++.+. ...+.   ... ..+...+|  +++.+|.||+|+|.+|
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-~~~~~---~~~-v~v~~~~g~~~~~~~d~lviAtGs~p  261 (598)
T 2x8g_A          187 RSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAK-GRLIS---PHE-VQITDKNQKVSTITGNKIILATGERP  261 (598)
T ss_dssp             GGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEE---TTE-EEEECTTCCEEEEEEEEEEECCCEEE
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEcC---CCE-EEEEeCCCCeEEEEeCEEEEeCCCCC
Confidence            0   001 1121221           223567899988653 33332   122 34455666  4699999999999887


Q ss_pred             Cch
Q 018416          140 NTS  142 (356)
Q Consensus       140 ~~~  142 (356)
                      ...
T Consensus       262 ~~p  264 (598)
T 2x8g_A          262 KYP  264 (598)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.69  E-value=5.1e-05  Score=75.07  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=31.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      -+++|||||+.|+.+|..|++.|.+|+|+++.+
T Consensus         9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            379999999999999999999999999999875

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.68  E-value=0.00029  Score=70.56  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=30.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      -.|+|||+|..|+-+|..|++ |.+|+|+++.+.
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~   41 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV   41 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence            479999999999999999999 999999999764

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.66  E-value=0.00022  Score=69.24  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=33.5

Q ss_pred             CEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416           96 VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        96 V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                      ++++++++|++|+.++++  ..|++.+|+++.+|.||++++.
T Consensus       248 ~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSC--YSLELDNGVTLDADSVIVTAPH  287 (470)
T ss_dssp             EEEECSCCEEEEEECSSS--EEEEESSSCEEEESEEEECSCH
T ss_pred             CEEEeCCceEEEEEcCCe--EEEEECCCCEEECCEEEECCCH
Confidence            589999999999875444  4588889989999999999874

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.58  E-value=5.6e-05  Score=66.17  Aligned_cols=34  Identities=21%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      .|+|||+|+.|+.+|..|++.|++|+|+|+++.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            5999999999999999999999999999998765

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.58  E-value=0.0004  Score=70.67  Aligned_cols=32  Identities=31%  Similarity=0.346  Sum_probs=30.3

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .|+|||+|..|+-+|..|++.|.+|+|+++.+
T Consensus        20 DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~   51 (621)
T 2h88_A           20 DAVVVGAGGAGLRAAFGLSEAGFNTACVTKLF   51 (621)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            69999999999999999999999999999864

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.56  E-value=0.00036  Score=71.60  Aligned_cols=33  Identities=18%  Similarity=0.360  Sum_probs=30.6

Q ss_pred             CcEEEECCchHHHHHHHHHHH-----CCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVI-----NKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~-----~G~~Vtlv~~~~   72 (356)
                      -.|+|||||+.|+-+|..|++     .|.+|+|+|+.+
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~   46 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   46 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence            369999999999999999999     999999999864

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.48  E-value=0.00027  Score=71.99  Aligned_cols=52  Identities=13%  Similarity=0.264  Sum_probs=41.3

Q ss_pred             CCEEEeCCeeeEEEEcCC-CcEEEEEeC---CCc--EEecCeEEEecCCCCCchhhhc
Q 018416           95 GVKFVKGTVLSSFDVDSN-GKVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEG  146 (356)
Q Consensus        95 GV~v~~~~~v~~i~~~~~-g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~~l~~~  146 (356)
                      ||++++++.|+++..+++ +++..|++.   +|+  ++++|.||+|+|..|++.++..
T Consensus       274 nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~  331 (623)
T 3pl8_A          274 RFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVN  331 (623)
T ss_dssp             EEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHT
T ss_pred             CEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHh
Confidence            789999999999987433 366677664   354  6889999999999999987754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.47  E-value=0.00076  Score=69.10  Aligned_cols=33  Identities=21%  Similarity=0.379  Sum_probs=30.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      -.|+|||+|.+|+-+|..|++.|.+|+|+++.+
T Consensus         6 ~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~   38 (660)
T 2bs2_A            6 CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (660)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             ccEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            379999999999999999999999999999864

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.29  E-value=0.0013  Score=67.15  Aligned_cols=33  Identities=30%  Similarity=0.484  Sum_probs=30.3

Q ss_pred             CcEEEECCchHHHHHHHHHH---H-CCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLV---I-NKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~---~-~G~~Vtlv~~~~   72 (356)
                      -.|+|||+|..|+-+|..++   + .|.+|+|+++.+
T Consensus        23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~   59 (643)
T 1jnr_A           23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   59 (643)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence            37999999999999999999   6 899999999875

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.10  E-value=0.0016  Score=65.19  Aligned_cols=97  Identities=22%  Similarity=0.310  Sum_probs=64.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc--------cC---------------------------Cc--------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------CM---------------------------AR--------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~--------~l---------------------------~~--------   77 (356)
                      .++|||+|+.|+.+|..++++|.+|.|||+.+.        +.                           ..        
T Consensus        44 DviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~~~  123 (542)
T 4b1b_A           44 DYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKFDN  123 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCcccCc
Confidence            499999999999999999999999999996431        10                           00        


Q ss_pred             -cCC-HH-----------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC----CCcEEecCeEEEecCCCCC
Q 018416           78 -LFT-PK-----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR----DGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        78 -~~d-~~-----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~----~g~~i~~D~vi~a~G~~p~  140 (356)
                       .+| +.           +...+...|++.||+++.+..  ++..  ...+ .+...    +++++.+|.+|+|||.+|.
T Consensus       124 ~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a--~f~~--~~~v-~V~~~~~~~~~~~i~a~~iiIATGs~P~  198 (542)
T 4b1b_A          124 LKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLA--KLKD--KNTV-SYYLKGDLSKEETVTGKYILIATGCRPH  198 (542)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEE--EEEE--TTEE-EEEEC--CCCEEEEEEEEEEECCCEEEC
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeE--EEcC--CCcc-eEeecccCCceEEEeeeeEEeccCCCCC
Confidence             011 11           112234457788999986642  3432  2322 23322    3367999999999999886


Q ss_pred             ch
Q 018416          141 TS  142 (356)
Q Consensus       141 ~~  142 (356)
                      ..
T Consensus       199 ~P  200 (542)
T 4b1b_A          199 IP  200 (542)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.03  E-value=0.00062  Score=66.91  Aligned_cols=74  Identities=16%  Similarity=0.254  Sum_probs=53.4

Q ss_pred             HHHHHHHHHh-----cCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccC---------CHH--------H
Q 018416           26 DANRLVNVMK-----SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF---------TPK--------I   83 (356)
Q Consensus        26 da~~i~~~l~-----~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~---------d~~--------~   83 (356)
                      |+.++.+.+.     ...+++|+|||+|++|+.+|..|++.|.+|+|+|+.+++..+..         ..+        .
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~   94 (498)
T 2iid_A           15 DYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEK   94 (498)
T ss_dssp             THHHHHHHHHHCSCCCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETT
T ss_pred             hHHHHHHHhccCCCCCCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccch
Confidence            4555555542     12367899999999999999999999999999999887655310         001        1


Q ss_pred             HHHHHHHHHhCCCEEE
Q 018416           84 ASYYEEYYKSKGVKFV   99 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~   99 (356)
                      ...+.+.+++.|+++.
T Consensus        95 ~~~~~~~~~~~g~~~~  110 (498)
T 2iid_A           95 HRIVREYIRKFDLRLN  110 (498)
T ss_dssp             CHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHhCCCce
Confidence            3456777888888754

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.01  E-value=0.0033  Score=62.16  Aligned_cols=102  Identities=13%  Similarity=0.103  Sum_probs=70.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCC--------------CcEEEEeeCCccC-------Cc----------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINK--------------INVTMVFPEAHCM-------AR----------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G--------------~~Vtlv~~~~~~l-------~~----------------------   77 (356)
                      .|+|||+|+.|+-+|..|.+.|              ..+.++++.+.+-       +.                      
T Consensus        41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s  120 (501)
T 4b63_A           41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT  120 (501)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred             cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence            4899999999999999998643              3567788765321       00                      


Q ss_pred             -------------------cC--CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC------cEEEEEeCCC-----cE
Q 018416           78 -------------------LF--TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG------KVVAVNLRDG-----NR  125 (356)
Q Consensus        78 -------------------~~--d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g------~v~~v~~~~g-----~~  125 (356)
                                         .+  -.++.++++...++.+..++++++|++++..+++      ..-.|+..++     ++
T Consensus       121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~  200 (501)
T 4b63_A          121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISA  200 (501)
T ss_dssp             HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEE
T ss_pred             hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEE
Confidence                               00  1356666666666777789999999999764332      1234444333     35


Q ss_pred             EecCeEEEecCCCCCch
Q 018416          126 LPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       126 i~~D~vi~a~G~~p~~~  142 (356)
                      +.++.||+|+|..|+..
T Consensus       201 ~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          201 RRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             EEEEEEEECCCCEECCC
T ss_pred             EEeCEEEECcCCCCCCC
Confidence            88999999999887754

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.96  E-value=0.0011  Score=64.76  Aligned_cols=82  Identities=21%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+|++.|||.|.+|+.+|..|.++|++|++.+..+.-    .++     ..+.|++.||+++.+.....+          
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~----~~~-----~~~~L~~~gi~~~~g~~~~~~----------   68 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFD----ENP-----TAQSLLEEGIKVVCGSHPLEL----------   68 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGG----GCH-----HHHHHHHTTCEEEESCCCGGG----------
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCccc----CCh-----HHHHHHhCCCEEEECCChHHh----------
Confidence            5799999999999999999999999999999987631    122     235678889999876541100          


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhh
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLF  144 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~  144 (356)
                        + ++   .+|.||+++|..|+...+
T Consensus        69 --~-~~---~~d~vv~spgi~~~~p~~   89 (451)
T 3lk7_A           69 --L-DE---DFCYMIKNPGIPYNNPMV   89 (451)
T ss_dssp             --G-GS---CEEEEEECTTSCTTSHHH
T ss_pred             --h-cC---CCCEEEECCcCCCCChhH
Confidence              0 10   179999999998877654

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.93  E-value=0.0013  Score=61.30  Aligned_cols=81  Identities=19%  Similarity=0.175  Sum_probs=60.8

Q ss_pred             CCCcEEEECCchHHHH-HHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEE
Q 018416           38 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  116 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE-~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~  116 (356)
                      ..+++.|||.|-+|+. +|..|.++|.+|++.+..+.  +    +     ..+.|++.||+++.+.....          
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~--~----~-----~~~~L~~~gi~v~~g~~~~~----------   61 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY--P----P-----MSTQLEALGIDVYEGFDAAQ----------   61 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC--T----T-----HHHHHHHTTCEEEESCCGGG----------
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC--c----H-----HHHHHHhCCCEEECCCCHHH----------
Confidence            4689999999999997 89999999999999998753  1    1     24567888999886532110          


Q ss_pred             EEEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416          117 AVNLRDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       117 ~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                         +..   ..+|.||+++|..|....+.
T Consensus        62 ---l~~---~~~d~vV~Spgi~~~~p~~~   84 (326)
T 3eag_A           62 ---LDE---FKADVYVIGNVAKRGMDVVE   84 (326)
T ss_dssp             ---GGS---CCCSEEEECTTCCTTCHHHH
T ss_pred             ---cCC---CCCCEEEECCCcCCCCHHHH
Confidence               010   14899999999998877554

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.92  E-value=0.0022  Score=65.73  Aligned_cols=32  Identities=19%  Similarity=0.201  Sum_probs=29.8

Q ss_pred             CcEEEECCchHHHHHHHHHHHC------CCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVIN------KINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~------G~~Vtlv~~~   71 (356)
                      -.|+|||+|..|+-+|..|++.      |.+|+|+++.
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~   60 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA   60 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence            3699999999999999999998      9999999985

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.83  E-value=0.0044  Score=54.56  Aligned_cols=107  Identities=15%  Similarity=0.260  Sum_probs=69.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|||||.+|...+..|.+.|.+||++.+.       +.+++    .+..++.+|+++...    +          
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~-------~~~~l----~~l~~~~~i~~i~~~----~----------   84 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT-------VSAEI----NEWEAKGQLRVKRKK----V----------   84 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS-------CCHHH----HHHHHTTSCEEECSC----C----------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-------CCHHH----HHHHHcCCcEEEECC----C----------
Confidence            6899999999999999999999999999999763       35554    333345567665321    1          


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhhhcccccccCcEEEec-----ccccCCCCEEEEcccc
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG-----RLQSSNSSVYAVGDVA  175 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~~~g~I~vd~-----~l~ts~~~VyAiGD~~  175 (356)
                         ..+..-.+|+||.|||...........  .. .+|.||-     .+.-..|.++--||..
T Consensus        85 ---~~~dL~~adLVIaAT~d~~~N~~I~~~--ak-~gi~VNvvD~p~~~~f~~Paiv~rg~l~  141 (223)
T 3dfz_A           85 ---GEEDLLNVFFIVVATNDQAVNKFVKQH--IK-NDQLVNMASSFSDGNIQIPAQFSRGRLS  141 (223)
T ss_dssp             ---CGGGSSSCSEEEECCCCTHHHHHHHHH--SC-TTCEEEC-----CCSEECCEEEEETTEE
T ss_pred             ---CHhHhCCCCEEEECCCCHHHHHHHHHH--Hh-CCCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence               111112489999999865433322211  12 5676662     2222567777777764

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=96.56  E-value=0.0017  Score=62.78  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=31.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|+|||||+.|+.+|..|++.|.+|+|+++.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            689999999999999999999999999999876

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=96.48  E-value=0.0029  Score=60.65  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=34.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCcc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC   74 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~   74 (356)
                      +..+|+|||||..|+-+|..|++.| .+|+|+|+.+++
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            4578999999999999999999999 999999998776

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=96.40  E-value=0.0034  Score=60.08  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=31.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|+|||||..|+++|..+++.|.+|+++++.+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            479999999999999999999999999999876

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=96.36  E-value=0.0026  Score=61.90  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=32.8

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCCcc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHC   74 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~~~   74 (356)
                      ++|+|||||.+|+-+|..|++.|.  +|+|+|+++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            589999999999999999999999  99999998765

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=96.34  E-value=0.0024  Score=62.63  Aligned_cols=35  Identities=23%  Similarity=0.233  Sum_probs=32.1

Q ss_pred             cEEEECCchHHHHHHHHHHH-CCCcEEEEeeCCccC
Q 018416           41 NAVVIGGGYIGMECAASLVI-NKINVTMVFPEAHCM   75 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~-~G~~Vtlv~~~~~~l   75 (356)
                      .|+|||||+.|+-+|..|++ .|.+|+|+|+++++.
T Consensus        12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~G   47 (513)
T 4gde_A           12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPG   47 (513)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCC
T ss_pred             CEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCc
Confidence            59999999999999999987 599999999998764

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=96.31  E-value=0.0039  Score=59.36  Aligned_cols=37  Identities=16%  Similarity=0.285  Sum_probs=33.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC-Ccc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHC   74 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~-~~~   74 (356)
                      .+.+|+|||+|+.|+-+|..|.+.|++|+|+|+. +++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            3578999999999999999999999999999998 654

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=96.27  E-value=0.0039  Score=61.67  Aligned_cols=36  Identities=31%  Similarity=0.429  Sum_probs=33.6

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+++++
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            468999999999999999999999999999998776

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=96.25  E-value=0.0043  Score=60.72  Aligned_cols=39  Identities=26%  Similarity=0.284  Sum_probs=34.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      ...+|+|||+|..|+-+|..|++.|.+|+|+|+.+++..
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG   48 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG   48 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            356899999999999999999999999999999877543

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=96.21  E-value=0.004  Score=61.57  Aligned_cols=37  Identities=19%  Similarity=0.326  Sum_probs=33.8

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCccC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCM   75 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~l   75 (356)
                      ..+|+|||||..|+-+|..|++.| .+|+|+|+++++.
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riG   45 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVG   45 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSB
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCC
Confidence            368999999999999999999999 9999999987654

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=96.19  E-value=0.0041  Score=58.28  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=31.4

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..+|+|||+|.+|+-+|..|+++|.+|+|+++.+
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            3589999999999999999999999999999863

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=96.14  E-value=0.0047  Score=60.12  Aligned_cols=38  Identities=26%  Similarity=0.384  Sum_probs=33.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      ...+|+|||+|..|+-+|..|++.|.+|+|+|+.+++.
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~G   52 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   52 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC
Confidence            35789999999999999999999999999999998764

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=96.14  E-value=0.0046  Score=60.22  Aligned_cols=39  Identities=15%  Similarity=0.182  Sum_probs=35.4

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      ..+|+|||+|..|+-+|..|++.|++|+++|+.+++..+
T Consensus        11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   49 (453)
T 2bcg_G           11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGE   49 (453)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcc
Confidence            357999999999999999999999999999999887544

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.02  E-value=0.016  Score=53.63  Aligned_cols=84  Identities=25%  Similarity=0.227  Sum_probs=54.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEe-CCeeeEEEEcCCCcEEEE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK-GTVLSSFDVDSNGKVVAV  118 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~-~~~v~~i~~~~~g~v~~v  118 (356)
                      .++.|||+|.+|.-+|..|++.|.+|+++.|.+.               +.+++.|+.+.. ...-..+.+      ..+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~---------------~~i~~~Gl~~~~~~~g~~~~~~------~~~   61 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY---------------ETVKAKGIRIRSATLGDYTFRP------AAV   61 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH---------------HHHHHHCEEEEETTTCCEEECC------SCE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH---------------HHHHhCCcEEeecCCCcEEEee------eee
Confidence            5899999999999999999999999999987530               345566776643 100001100      001


Q ss_pred             EeCCCcE-E-ecCeEEEecCCCCCchhhh
Q 018416          119 NLRDGNR-L-PTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       119 ~~~~g~~-i-~~D~vi~a~G~~p~~~l~~  145 (356)
                       +.+-+. . ++|+||+++-.....+.++
T Consensus        62 -~~~~~~~~~~~DlVilavK~~~~~~~l~   89 (320)
T 3i83_A           62 -VRSAAELETKPDCTLLCIKVVEGADRVG   89 (320)
T ss_dssp             -ESCGGGCSSCCSEEEECCCCCTTCCHHH
T ss_pred             -ECCHHHcCCCCCEEEEecCCCChHHHHH
Confidence             122222 2 6899999998776555544

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=96.01  E-value=0.0059  Score=59.88  Aligned_cols=37  Identities=32%  Similarity=0.425  Sum_probs=34.4

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+|+.+++.
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   49 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   49 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            4789999999999999999999999999999998764

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=96.00  E-value=0.0061  Score=58.85  Aligned_cols=60  Identities=17%  Similarity=0.304  Sum_probs=45.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc----------------CCHHHHHHHHHHHHhCCCEEEe
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------FTPKIASYYEEYYKSKGVKFVK  100 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~----------------~d~~~~~~~~~~l~~~GV~v~~  100 (356)
                      .+|+|||+|..|+.+|..|++.|.+|+|+|+++++..+.                +... ...+.+.+++.|++...
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~-~~~~~~~~~~~g~~~~~   81 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPD-QTALISLLDELGLKTFE   81 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTT-CHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCc-cHHHHHHHHHcCCcccc
Confidence            579999999999999999999999999999987653321                1111 24456677888987654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.96  E-value=0.0085  Score=49.19  Aligned_cols=37  Identities=19%  Similarity=0.139  Sum_probs=33.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      .+++++|+|+|.+|..+|..|.+.|.+|+++++.+..
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~   54 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYA   54 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            5789999999999999999999999999999987653

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=95.95  E-value=0.0064  Score=59.52  Aligned_cols=37  Identities=22%  Similarity=0.427  Sum_probs=34.1

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+|+.+++.
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G   75 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIG   75 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSB
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            3689999999999999999999999999999988764

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=95.91  E-value=0.0063  Score=57.95  Aligned_cols=36  Identities=17%  Similarity=0.298  Sum_probs=33.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      .+++|||+|..|+.+|..|++.|.+|+++|+++++.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            589999999999999999999999999999987764

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=95.83  E-value=0.005  Score=57.42  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=30.2

Q ss_pred             cEEEECCchHHHHHHHHHHHCC------CcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLVINK------INVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G------~~Vtlv~~~~   72 (356)
                      +|+|||||.+|+-+|..|+++|      .+|+|+++.+
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            6999999999999999999998      8999999875

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.81  E-value=0.0041  Score=60.44  Aligned_cols=78  Identities=19%  Similarity=0.300  Sum_probs=57.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|||.|.+|+.+|..|.++|++|+..+.++....   .        ..|+ .|+++..+....+          .
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~---~--------~~l~-~G~~~~~g~~~~~----------~   61 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG---L--------DKLP-EAVERHTGSLNDE----------W   61 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT---G--------GGSC-TTSCEEESSCCHH----------H
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch---h--------HHhh-CCCEEEECCCcHH----------H
Confidence            578999999999999999999999999999998764211   1        3355 7888876642100          0


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhh
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLF  144 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~  144 (356)
                        +.     .+|.||+++|..|+...+
T Consensus        62 --~~-----~~d~vV~s~gi~~~~p~~   81 (439)
T 2x5o_A           62 --LM-----AADLIVASPGIALAHPSL   81 (439)
T ss_dssp             --HH-----TCSEEEECTTSCTTCHHH
T ss_pred             --hc-----cCCEEEeCCCCCCCCHHH
Confidence              11     379999999988765543

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.75  E-value=0.01  Score=58.62  Aligned_cols=77  Identities=16%  Similarity=0.126  Sum_probs=58.0

Q ss_pred             CCCcEEEECCchHHHH-HHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEE
Q 018416           38 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  116 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE-~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~  116 (356)
                      ..+++.|||-|-+|+. +|..|.++|.+|+..+..+.       +     ..+.|++.||+++.+.....          
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~~~----------   78 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN-------S-----VTQHLTALGAQIYFHHRPEN----------   78 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC-------H-----HHHHHHHTTCEEESSCCGGG----------
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC-------H-----HHHHHHHCCCEEECCCCHHH----------
Confidence            4689999999999996 89999999999999986532       1     23467888999987632110          


Q ss_pred             EEEeCCCcEEecCeEEEecCCCCCchhh
Q 018416          117 AVNLRDGNRLPTDMVVVGIGIRPNTSLF  144 (356)
Q Consensus       117 ~v~~~~g~~i~~D~vi~a~G~~p~~~l~  144 (356)
                         +     ..+|+||+++|..|+...+
T Consensus        79 ---~-----~~~d~vV~Spgi~~~~p~~   98 (494)
T 4hv4_A           79 ---V-----LDASVVVVSTAISADNPEI   98 (494)
T ss_dssp             ---G-----TTCSEEEECTTSCTTCHHH
T ss_pred             ---c-----CCCCEEEECCCCCCCCHHH
Confidence               1     1389999999998876543

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=95.73  E-value=0.0087  Score=57.39  Aligned_cols=37  Identities=24%  Similarity=0.331  Sum_probs=33.6

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      ..+++|||+|+.|+-+|..|++.|.+|+|+++++++.
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIG   65 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCC
Confidence            3479999999999999999999999999999987653

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=95.72  E-value=0.021  Score=55.94  Aligned_cols=58  Identities=19%  Similarity=0.241  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      .++.+.+.+.+++.|+++++++.|++|..++++++..|++.+|+++.||.||.+.+..
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            4678888999999999999999999998756778888999999999999999999987

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.70  E-value=0.015  Score=47.56  Aligned_cols=34  Identities=18%  Similarity=0.174  Sum_probs=31.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ..++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            3578999999999999999999999999999875

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=95.68  E-value=0.0089  Score=57.15  Aligned_cols=37  Identities=19%  Similarity=0.317  Sum_probs=33.7

Q ss_pred             CCcEEEECCchHHHHHHHHHHHC-CCcEEEEeeCCccC
Q 018416           39 GGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCM   75 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~-G~~Vtlv~~~~~~l   75 (356)
                      ..+++|||+|..|+-+|..|++. |.+|+|+|+++++.
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~G   44 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIG   44 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            46899999999999999999999 99999999987653

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=95.65  E-value=0.011  Score=60.52  Aligned_cols=38  Identities=24%  Similarity=0.396  Sum_probs=35.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      +++|+|||+|+.|+.+|..|.+.|++|+++|+.+++..
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg  144 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  144 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            57899999999999999999999999999999887654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=95.61  E-value=0.008  Score=58.45  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=33.1

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCcc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC   74 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~   74 (356)
                      ..+|+|||+|..|+-+|..|++.|  .+|+|+|+.+++
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            368999999999999999999999  999999998765

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=95.58  E-value=0.0093  Score=56.38  Aligned_cols=35  Identities=23%  Similarity=0.403  Sum_probs=32.3

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      +++|||+|..|+-+|..|++.|.+|+++|+++++.
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            68999999999999999999999999999987653

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=95.56  E-value=0.012  Score=61.89  Aligned_cols=39  Identities=23%  Similarity=0.387  Sum_probs=35.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      ..++|+|||+|+.|+.+|..|++.|++|+|+|+.+++..
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG  315 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  315 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCC
Confidence            357899999999999999999999999999999887654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.44  E-value=0.013  Score=47.04  Aligned_cols=33  Identities=21%  Similarity=0.137  Sum_probs=30.8

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .++++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            478999999999999999999999999999874

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.38  E-value=0.022  Score=52.48  Aligned_cols=84  Identities=21%  Similarity=0.237  Sum_probs=53.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  119 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~  119 (356)
                      .++.|||+|.+|.-+|..|++.|.+|+++.|.+               .+.+++.|+.+.....-..+.+      ..+ 
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~---------------~~~i~~~g~~~~~~~g~~~~~~------~~~-   60 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD---------------YEAIAGNGLKVFSINGDFTLPH------VKG-   60 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT---------------HHHHHHTCEEEEETTCCEEESC------CCE-
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc---------------HHHHHhCCCEEEcCCCeEEEee------cee-
Confidence            579999999999999999999999999998753               0335667877653211001100      001 


Q ss_pred             eCCCcE-EecCeEEEecCCCCCchhhh
Q 018416          120 LRDGNR-LPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       120 ~~~g~~-i~~D~vi~a~G~~p~~~l~~  145 (356)
                      +.+-+. -++|+||+++-.....+.++
T Consensus        61 ~~~~~~~~~~D~vilavk~~~~~~~l~   87 (312)
T 3hn2_A           61 YRAPEEIGPMDLVLVGLKTFANSRYEE   87 (312)
T ss_dssp             ESCHHHHCCCSEEEECCCGGGGGGHHH
T ss_pred             ecCHHHcCCCCEEEEecCCCCcHHHHH
Confidence            112111 25899999987665544443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.33  E-value=0.015  Score=46.95  Aligned_cols=77  Identities=16%  Similarity=0.242  Sum_probs=51.6

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  118 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v  118 (356)
                      .++++|+|.|.+|..+|..|.+.|.+|+++++.+.         ..    +.+++.|+.++.+...       +..   +
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~---------~~----~~~~~~g~~~i~gd~~-------~~~---~   63 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT---------RV----DELRERGVRAVLGNAA-------NEE---I   63 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH---------HH----HHHHHTTCEEEESCTT-------SHH---H
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH---------HH----HHHHHcCCCEEECCCC-------CHH---H
Confidence            46899999999999999999999999999987532         22    2345578876644210       000   0


Q ss_pred             EeCCCcEEecCeEEEecCCCC
Q 018416          119 NLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus       119 ~~~~g~~i~~D~vi~a~G~~p  139 (356)
                       +..-..-.+|.++++++...
T Consensus        64 -l~~a~i~~ad~vi~~~~~~~   83 (140)
T 3fwz_A           64 -MQLAHLECAKWLILTIPNGY   83 (140)
T ss_dssp             -HHHTTGGGCSEEEECCSCHH
T ss_pred             -HHhcCcccCCEEEEECCChH
Confidence             00001125899999998643

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.33  E-value=0.014  Score=46.30  Aligned_cols=33  Identities=21%  Similarity=0.304  Sum_probs=29.9

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ..+++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            468999999999999999999999999999864

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=95.32  E-value=0.017  Score=56.66  Aligned_cols=36  Identities=22%  Similarity=0.160  Sum_probs=33.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCcc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC   74 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~   74 (356)
                      ..+++|||+|+.|+-+|..|++.| .+|+++|+.+++
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            468999999999999999999998 799999998765

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.10  E-value=0.022  Score=45.35  Aligned_cols=34  Identities=24%  Similarity=0.091  Sum_probs=30.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ..++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4578999999999999999999999999999864

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.10  E-value=0.026  Score=52.56  Aligned_cols=78  Identities=15%  Similarity=0.248  Sum_probs=51.1

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  118 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v  118 (356)
                      ..++.|||+|.+|.-+|..|++.|.+|+++.|.++              .+.+++.|+.+.....  ....  .  + ..
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~--------------~~~~~~~g~~~~~~~~--~~~~--~--~-~~   61 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGAT--------------LQALQTAGLRLTEDGA--THTL--P--V-RA   61 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHH--------------HHHHHHTCEEEEETTE--EEEE--C--C-EE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHH--------------HHHHHHCCCEEecCCC--eEEE--e--e-eE
Confidence            36899999999999999999999999999976321              2345677887653211  1110  0  0 11


Q ss_pred             EeCCCcE-EecCeEEEecCCC
Q 018416          119 NLRDGNR-LPTDMVVVGIGIR  138 (356)
Q Consensus       119 ~~~~g~~-i~~D~vi~a~G~~  138 (356)
                       ..+-+. -++|+||+++...
T Consensus        62 -~~~~~~~~~~D~Vilavk~~   81 (335)
T 3ghy_A           62 -THDAAALGEQDVVIVAVKAP   81 (335)
T ss_dssp             -ESCHHHHCCCSEEEECCCHH
T ss_pred             -ECCHHHcCCCCEEEEeCCch
Confidence             112111 3589999998753

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.09  E-value=0.015  Score=44.60  Aligned_cols=35  Identities=31%  Similarity=0.290  Sum_probs=31.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCC-CcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~   72 (356)
                      ..++++|+|+|.+|..++..|.+.| .+|+++.+.+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            3578999999999999999999999 8999998753

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.83  E-value=0.04  Score=50.95  Aligned_cols=80  Identities=16%  Similarity=0.261  Sum_probs=49.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      ...++.|||+|.+|.-+|..|++.|.+|+++ +.+.         .    .+.+++.|+.+... .. ....    .+ .
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~---------~----~~~i~~~g~~~~~~-~~-~~~~----~~-~   76 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQ---------H----VQAIEATGLRLETQ-SF-DEQV----KV-S   76 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHH---------H----HHHHHHHCEEEECS-SC-EEEE----CC-E
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHh---------H----HHHHHhCCeEEEcC-CC-cEEE----ee-e
Confidence            4679999999999999999999999999999 5432         1    23345567766521 11 1110    00 1


Q ss_pred             EEeCCCcE-EecCeEEEecCCCC
Q 018416          118 VNLRDGNR-LPTDMVVVGIGIRP  139 (356)
Q Consensus       118 v~~~~g~~-i~~D~vi~a~G~~p  139 (356)
                      . ..+-+. -.+|+||+++....
T Consensus        77 ~-~~~~~~~~~~D~vilavk~~~   98 (318)
T 3hwr_A           77 A-SSDPSAVQGADLVLFCVKSTD   98 (318)
T ss_dssp             E-ESCGGGGTTCSEEEECCCGGG
T ss_pred             e-eCCHHHcCCCCEEEEEccccc
Confidence            1 122222 25899999987653

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=94.80  E-value=0.03  Score=54.09  Aligned_cols=38  Identities=13%  Similarity=0.099  Sum_probs=34.2

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      ..+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg   43 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGG   43 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccc
Confidence            35899999999999999999999999999999876543

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=94.71  E-value=0.049  Score=54.07  Aligned_cols=80  Identities=20%  Similarity=0.195  Sum_probs=59.3

Q ss_pred             CCCcEEEECCchHHHH-HHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEE
Q 018416           38 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  116 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE-~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~  116 (356)
                      +.+++.+||-|-+|+. +|..|.++|.+|+..+..+.      ++     ..+.|++.||+++.+.....+         
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~------~~-----~~~~L~~~gi~~~~G~~~~~~---------   77 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY------PP-----MSTQLEQAGVTIEEGYLIAHL---------   77 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------TT-----HHHHHHHTTCEEEESCCGGGG---------
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC------cH-----HHHHHHHCCCEEECCCCHHHc---------
Confidence            5799999999999997 68889999999999998642      11     245678889998766321110         


Q ss_pred             EEEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416          117 AVNLRDGNRLPTDMVVVGIGIRPNTSLFE  145 (356)
Q Consensus       117 ~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  145 (356)
                              .-.+|+||+++|..|....+.
T Consensus        78 --------~~~~d~vV~Spgi~~~~p~l~   98 (524)
T 3hn7_A           78 --------QPAPDLVVVGNAMKRGMDVIE   98 (524)
T ss_dssp             --------CSCCSEEEECTTCCTTSHHHH
T ss_pred             --------CCCCCEEEECCCcCCCCHHHH
Confidence                    014799999999988776543

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=94.65  E-value=0.033  Score=54.15  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=33.5

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCccCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMA   76 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~l~   76 (356)
                      ..+++|||+|..|+-+|..|++.|. +|+++|+.+++..
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg   42 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG   42 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCC
Confidence            4689999999999999999999998 8999999876543

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=94.50  E-value=0.032  Score=54.68  Aligned_cols=38  Identities=8%  Similarity=0.034  Sum_probs=34.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+.+...
T Consensus        21 ~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~   58 (475)
T 3p1w_A           21 YDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGE   58 (475)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence            47999999999999999999999999999999876543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.45  E-value=0.028  Score=47.28  Aligned_cols=34  Identities=15%  Similarity=0.096  Sum_probs=31.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHC-CCcEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~-G~~Vtlv~~~~   72 (356)
                      +++++|+|.|.+|..+|..|.+. |.+|+++++.+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            56899999999999999999999 99999998753

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.39  E-value=0.029  Score=52.05  Aligned_cols=37  Identities=19%  Similarity=0.362  Sum_probs=32.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      ..++|.|||+|.+|..+|..++..|++|++++..+..
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~   41 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQ   41 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            3578999999999999999999999999999987653

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=94.38  E-value=0.16  Score=49.09  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=31.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .+.+..|||.|+.|+-+|..|++.|++|+.+++.+.
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            578899999999999999999999999999987643

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.24  E-value=0.036  Score=50.24  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=32.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .+++|+|||||.+|...+..|.+.|.+||++.+.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5799999999999999999999999999999875

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=94.08  E-value=0.11  Score=50.56  Aligned_cols=55  Identities=24%  Similarity=0.312  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHhCC-CEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416           81 PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        81 ~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                      ..+.+.+.+.+++.| ++++++++|++|+..+++  ..|++.+|+++.+|.||+++|.
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vI~a~~~  310 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDA--ARVTARDGREFVAKRVVCTIPL  310 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSS--EEEEETTCCEEEEEEEEECCCG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCE--EEEEECCCCEEEcCEEEECCCH
Confidence            356777888888888 999999999999874433  3577888889999999999994

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.02  E-value=0.12  Score=47.57  Aligned_cols=35  Identities=14%  Similarity=-0.039  Sum_probs=32.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAH   73 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~   73 (356)
                      ..+|.|||.|.+|.-+|..|++.| .+|+++++.+.
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~   59 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFN   59 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            368999999999999999999999 99999988764

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.97  E-value=0.1  Score=47.86  Aligned_cols=76  Identities=24%  Similarity=0.273  Sum_probs=49.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  119 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~  119 (356)
                      .+++|||+|.+|.-+|..|+ .|.+|+++.|.+.         -    .+.+++.|+.+...... ...        .+.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~---------~----~~~l~~~G~~~~~~~~~-~~~--------~~~   59 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQE---------Q----AAAIQSEGIRLYKGGEE-FRA--------DCS   59 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH---------H----HHHHHHHCEEEEETTEE-EEE--------CCE
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHH---------H----HHHHHhCCceEecCCCe-ecc--------ccc
Confidence            57999999999999999999 9999999987532         1    23455668877632211 110        111


Q ss_pred             eCCCcEEecCeEEEecCCC
Q 018416          120 LRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus       120 ~~~g~~i~~D~vi~a~G~~  138 (356)
                      ......-++|+||+++-..
T Consensus        60 ~~~~~~~~~D~vilavK~~   78 (307)
T 3ego_A           60 ADTSINSDFDLLVVTVKQH   78 (307)
T ss_dssp             EESSCCSCCSEEEECCCGG
T ss_pred             ccccccCCCCEEEEEeCHH
Confidence            1111123589999997643

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=93.90  E-value=0.04  Score=50.01  Aligned_cols=36  Identities=22%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      -++|.|||+|.+|..+|..|++.|++|+++++.+..
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~   39 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDA   39 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            478999999999999999999999999999887543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=93.71  E-value=0.09  Score=48.39  Aligned_cols=34  Identities=15%  Similarity=0.014  Sum_probs=30.5

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~   72 (356)
                      -.+|.|||.|.+|.-+|..|.+.|. +|+++++.+
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            3689999999999999999999999 999998753

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=93.68  E-value=0.025  Score=58.20  Aligned_cols=35  Identities=20%  Similarity=0.245  Sum_probs=33.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCC--------CcEEEEeeCC-cc
Q 018416           40 GNAVVIGGGYIGMECAASLVINK--------INVTMVFPEA-HC   74 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G--------~~Vtlv~~~~-~~   74 (356)
                      ++|+|||+|..|+.+|..|.+.|        .+|+|+|+++ ++
T Consensus        57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            58999999999999999999998        9999999998 77

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=93.41  E-value=0.062  Score=54.25  Aligned_cols=54  Identities=22%  Similarity=0.319  Sum_probs=38.1

Q ss_pred             ccCcEEEecccccCCCCEEEEccccccCccccCcccccc--cHHHHHHHHHHHHHHHcC
Q 018416          151 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE--HVDSARKSAKHAVAAIME  207 (356)
Q Consensus       151 ~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~--~~~~A~~~g~~aa~~i~g  207 (356)
                      ..|+|.||.++||++|++||+|+|+....  +|.. ++.  ....+.-.|++|+.++..
T Consensus       358 t~GGi~vd~~~~~~IpGLyAaGe~a~~g~--hGan-rl~gnsl~~~~vfGr~Ag~~aa~  413 (602)
T 1kf6_A          358 TMGGIETDQNCETRIKGLFAVGECSSVGL--HGAN-RLGSNSLAELVVFGRLAGEQATE  413 (602)
T ss_dssp             ECCEEECCTTSBCSSBTEEECGGGEECSS--STTS-CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCeEEECCCCccccCCEEEccccccccc--cCCC-CCccHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999974211  1222 122  234566778888877753

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=93.15  E-value=0.094  Score=45.64  Aligned_cols=36  Identities=14%  Similarity=0.177  Sum_probs=32.3

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .+++++|.|+ |++|..++..|.+.|.+|+++.|.+.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            5789999997 99999999999999999999998653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.06  E-value=0.043  Score=44.23  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=31.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .+++++|||+|.+|..++..|.+.|.+|+++.|.
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~   53 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN   53 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            4899999999999999999999999998888764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.02  E-value=0.07  Score=46.19  Aligned_cols=31  Identities=23%  Similarity=0.379  Sum_probs=29.2

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      +++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~   32 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKD   32 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            6999999999999999999999999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.92  E-value=0.13  Score=46.19  Aligned_cols=35  Identities=26%  Similarity=0.285  Sum_probs=32.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .++++|.|+|++|-.++..|.+.|.+|+.+.|.+.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            47899999999999999999999999999998754

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=92.71  E-value=0.094  Score=52.08  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=30.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      -.++|||+|..|+-+|..|++.|.+|.++|+++
T Consensus         8 ~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~   40 (546)
T 1kdg_A            8 YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   40 (546)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             eeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            469999999999999999999999999999875

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.59  E-value=0.19  Score=45.41  Aligned_cols=47  Identities=21%  Similarity=0.220  Sum_probs=38.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           26 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        26 da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      |..-+...++...+++++|+|+|-+|--++..|.+.|.+|+++.|.+
T Consensus       105 D~~Gf~~~L~~~~~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          105 DALGFYLSLKQKNYQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             HHHHHHHHCC---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             hHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            66667666654347899999999999999999999999999998875

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=92.52  E-value=0.22  Score=48.21  Aligned_cols=59  Identities=12%  Similarity=0.149  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcC-CCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      ..+.+.+.+.+++.|+++++++.|+++..+. ++++..|.+ +|+++.+|.||+++|..|.
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            4678888888999999999999999998632 566666766 5888999999999997643

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=92.51  E-value=0.22  Score=48.50  Aligned_cols=79  Identities=14%  Similarity=0.193  Sum_probs=53.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+++++|||+|.+|...+..|.+.|.+|+++.+.       +.+++    .+..++.+++++.+.-              
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~-------~~~~~----~~l~~~~~i~~~~~~~--------------   65 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT-------FIPQF----TVWANEGMLTLVEGPF--------------   65 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS-------CCHHH----HHHHTTTSCEEEESSC--------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC-------CCHHH----HHHHhcCCEEEEECCC--------------
Confidence            5789999999999999999999999999999863       34443    2222335666654321              


Q ss_pred             EEeCCCcEEecCeEEEecCCCC-Cchhh
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRP-NTSLF  144 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p-~~~l~  144 (356)
                         ..+..-.+|+||.++|... |..+.
T Consensus        66 ---~~~~l~~~~lVi~at~~~~~n~~i~   90 (457)
T 1pjq_A           66 ---DETLLDSCWLAIAATDDDTVNQRVS   90 (457)
T ss_dssp             ---CGGGGTTCSEEEECCSCHHHHHHHH
T ss_pred             ---CccccCCccEEEEcCCCHHHHHHHH
Confidence               1111114899999998663 44433

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=92.45  E-value=0.085  Score=48.15  Aligned_cols=84  Identities=14%  Similarity=0.089  Sum_probs=51.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHC-----C-CcEEEEeeCCccCCccCCHHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCC
Q 018416           40 GNAVVIGGGYIGMECAASLVIN-----K-INVTMVFPEAHCMARLFTPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSN  112 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~-----G-~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~  112 (356)
                      .++.|||+|.+|.-+|..|.+.     | .+|+++.| +.   .          .+.+.+ .|+.+...... ....   
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~---~----------~~~l~~~~g~~~~~~~~~-~~~~---   70 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GA---H----------LEAIRAAGGLRVVTPSRD-FLAR---   70 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HH---H----------HHHHHHHTSEEEECSSCE-EEEC---
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HH---H----------HHHHHhcCCeEEEeCCCC-eEEe---
Confidence            4799999999999999999998     9 99999976 21   1          233445 68776531110 0100   


Q ss_pred             CcEEEEEeCCCcE-EecCeEEEecCCCCCchhh
Q 018416          113 GKVVAVNLRDGNR-LPTDMVVVGIGIRPNTSLF  144 (356)
Q Consensus       113 g~v~~v~~~~g~~-i~~D~vi~a~G~~p~~~l~  144 (356)
                       .+ .+. ++.+. -.+|.||+++......+.+
T Consensus        71 -~~-~~~-~~~~~~~~~D~vil~vk~~~~~~v~  100 (317)
T 2qyt_A           71 -PT-CVT-DNPAEVGTVDYILFCTKDYDMERGV  100 (317)
T ss_dssp             -CS-EEE-SCHHHHCCEEEEEECCSSSCHHHHH
T ss_pred             -cc-eEe-cCccccCCCCEEEEecCcccHHHHH
Confidence             00 111 12111 2589999998866543333

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=92.36  E-value=0.14  Score=48.97  Aligned_cols=36  Identities=17%  Similarity=0.178  Sum_probs=32.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ++.+|+|+|+|.+|+.+|..+...|.+|+++++.+.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            578999999999999999999999999999988753

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=92.34  E-value=0.1  Score=49.46  Aligned_cols=36  Identities=19%  Similarity=0.149  Sum_probs=33.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ++++|+|+|+|.+|..+|..+...|.+|+++++.+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999999999999999999999999988754

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=92.33  E-value=0.11  Score=49.90  Aligned_cols=58  Identities=16%  Similarity=0.269  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      ..+.+.+.+.+++.|+++++++.|++|.. +++.+..+. .+|+++.+|.||+++|..+.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~~v~~v~-~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVK-SEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEE-ETTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEE-eCCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence            46778888888899999999999999986 456655555 47889999999999997763

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=92.00  E-value=0.54  Score=43.27  Aligned_cols=56  Identities=20%  Similarity=0.253  Sum_probs=41.6

Q ss_pred             CCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEe
Q 018416           39 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK  100 (356)
Q Consensus        39 ~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~  100 (356)
                      .++|+|.|+ |++|-.++..|.+.|.+|+++.|.+.     .+++-.+. .+.+...+++++.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~-----~~~~~~~~-~~~l~~~~v~~~~   66 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGP-----RSPSKAKI-FKALEDKGAIIVY   66 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSC-----CCHHHHHH-HHHHHHTTCEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCC-----CChhHHHH-HHHHHhCCcEEEE
Confidence            468999997 99999999999999999999999763     13333332 2345667777764

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=92.00  E-value=0.12  Score=51.36  Aligned_cols=56  Identities=13%  Similarity=0.103  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCC------cEEEEEeC---CCc--EEecCeEEEecCC
Q 018416           82 KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNG------KVVAVNLR---DGN--RLPTDMVVVGIGI  137 (356)
Q Consensus        82 ~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g------~v~~v~~~---~g~--~i~~D~vi~a~G~  137 (356)
                      .+...+.+.+++ .||+++.++.++++..++++      ++..+...   +|+  .+.++.||+|+|.
T Consensus       139 ~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  206 (540)
T 1chu_A          139 EVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGG  206 (540)
T ss_dssp             ---CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            444555667777 79999999999999863334      66655553   565  6899999999984

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=91.99  E-value=0.16  Score=45.89  Aligned_cols=33  Identities=30%  Similarity=0.407  Sum_probs=30.4

Q ss_pred             cEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           41 NAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        41 ~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ||+|.|| |++|-.++..|.++|++|+.+.|.+.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            6899997 99999999999999999999998764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=91.97  E-value=0.43  Score=42.27  Aligned_cols=55  Identities=27%  Similarity=0.187  Sum_probs=39.6

Q ss_pred             HhcCCCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCE
Q 018416           34 MKSCSGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        34 l~~~~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~   97 (356)
                      +....+|.++|.| +|.+|.++|..|++.|.+|.++.|..         +-.+.+.+.+.+.+.+
T Consensus        24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~---------~~~~~~~~~~~~~~~~   79 (262)
T 3rkr_A           24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDV---------EKLRAVEREIVAAGGE   79 (262)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCE
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHHhCCc
Confidence            3334678888888 58999999999999999999987643         3334455566665543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=91.94  E-value=0.17  Score=43.67  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=31.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ...++.|||.|.+|.-+|..|.+.|.+|+++++.+.
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            467899999999999999999999999999987654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=91.94  E-value=0.13  Score=45.97  Aligned_cols=34  Identities=15%  Similarity=0.185  Sum_probs=31.4

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++|+|.|+|++|-.++..|.+.|.+|+.+.|.+
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            3689999999999999999999999999998865

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=91.89  E-value=0.15  Score=48.75  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=32.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ++++|+|+|+|.+|..++..+...|.+|+++++.+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            478999999999999999999999999999987653

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=91.85  E-value=0.17  Score=42.47  Aligned_cols=36  Identities=19%  Similarity=0.283  Sum_probs=32.2

Q ss_pred             CCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           39 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        39 ~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      .++++|.|+ |++|..++..|.+.|.+|+++.|.+.-
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~   39 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR   39 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhh
Confidence            368999997 999999999999999999999987653

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=91.74  E-value=0.48  Score=42.03  Aligned_cols=55  Identities=16%  Similarity=0.308  Sum_probs=42.0

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF   98 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v   98 (356)
                      .+|.++|.| ++.+|.++|..|++.|.+|.++.+..+      +.+-.+.+.+.+++.|.++
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~------~~~~~~~~~~~~~~~~~~~   65 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAK------DSDTANKLKDELEDQGAKV   65 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGG------GHHHHHHHHHHHHTTTCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCcc------CHHHHHHHHHHHHhcCCcE
Confidence            578888888 578999999999999999999877532      4455566666777766543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.65  E-value=0.18  Score=47.81  Aligned_cols=36  Identities=19%  Similarity=0.132  Sum_probs=32.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ++++|+|+|+|.+|..++..+...|.+|+++++.+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            588999999999999999999999999999987653

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=91.61  E-value=0.17  Score=46.17  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=31.8

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      -++|.|||+|.+|.-+|..|++.|++|+++++.+.
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            36899999999999999999999999999988654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.59  E-value=0.76  Score=41.06  Aligned_cols=61  Identities=18%  Similarity=0.104  Sum_probs=43.9

Q ss_pred             CCCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCc----cCCHHHHHHHHHHHHhCCCE
Q 018416           37 CSGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMAR----LFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        37 ~~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----~~d~~~~~~~~~~l~~~GV~   97 (356)
                      ..+|.++|.| +|.+|.++|..|++.|.+|.++.+.......    .-+++-.+.+.+.+++.|.+
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRK   78 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCe
Confidence            3678899988 5799999999999999999999885432211    01455556666677766544

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=91.55  E-value=0.35  Score=44.48  Aligned_cols=46  Identities=15%  Similarity=0.091  Sum_probs=36.3

Q ss_pred             HHHHHHHHhcCCCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           27 ANRLVNVMKSCSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        27 a~~i~~~l~~~~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .+++...+.. .+++|+|.|+ |++|..++..|.+.|.+|+.+.|.+.
T Consensus        14 ~~~~~~~~~~-~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           14 YEEITQQLIF-SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             HHHHHHHHHH-SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             HhhHHhhCCC-CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3444333332 5789999995 99999999999999999999998754

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=91.55  E-value=0.57  Score=47.53  Aligned_cols=61  Identities=13%  Similarity=0.120  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCC-CcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           80 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        80 d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      ..++.+.+.+.++..|.++++++.|.+|..+++ |++..+.+.+|+++.||.||......|.
T Consensus       377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~  438 (650)
T 1vg0_A          377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  438 (650)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence            347888888899999999999999999976443 7787888788999999999997776654

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=91.55  E-value=0.34  Score=43.54  Aligned_cols=46  Identities=20%  Similarity=0.193  Sum_probs=37.2

Q ss_pred             HHHHHHHHHhc----CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           26 DANRLVNVMKS----CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        26 da~~i~~~l~~----~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      |...+...++.    ..+++++|+|+|-+|..+|..|.+.|.+|+++.|.
T Consensus       102 D~~G~~~~L~~~~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          102 DGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             HHHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CHHHHHHHHHhcCcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            45555555532    35789999999999999999999999999998765

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.51  E-value=0.16  Score=47.90  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=32.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++++++|+|+|.+|..+|..++..|.+|+++++.+
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            57899999999999999999999999999998753

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=91.51  E-value=0.19  Score=46.98  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=31.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      |+|+|+|||..|.+++..+++.|++|.+++..+.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            6899999999999999999999999999987653

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=91.50  E-value=0.3  Score=47.05  Aligned_cols=54  Identities=22%  Similarity=0.375  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                      .+.+.+.+.+++.|+++++++.|++|+.++++ ...|.+ ++.++.+|.||++++.
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~v~~-~~~~~~ad~vv~a~p~  288 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEG-RWKVSL-RDSSLEADHVISAIPA  288 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECGGG-CEEEEC-SSCEEEESEEEECSCH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCc-eEEEEE-CCeEEEcCEEEECCCH
Confidence            57788888999999999999999999874333 234554 5668999999999974

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=91.36  E-value=0.14  Score=50.36  Aligned_cols=33  Identities=27%  Similarity=0.365  Sum_probs=30.2

Q ss_pred             cEEEECCchHHHHHHHHHHH-CCCcEEEEeeCCc
Q 018416           41 NAVVIGGGYIGMECAASLVI-NKINVTMVFPEAH   73 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~-~G~~Vtlv~~~~~   73 (356)
                      .++|||+|..|+-+|..|++ .|.+|.|+|+++.
T Consensus        19 D~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             eEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            69999999999999999998 5789999999864

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=91.29  E-value=0.81  Score=40.95  Aligned_cols=59  Identities=20%  Similarity=0.097  Sum_probs=42.3

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-------CCHHHHHHHHHHHHhCCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARL-------FTPKIASYYEEYYKSKGV   96 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-------~d~~~~~~~~~~l~~~GV   96 (356)
                      .+|.++|.| ++.||.++|..|++.|.+|.++.+.+......       -+++-.+.+.+.++..+.
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNR   76 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCC
Confidence            578899998 47899999999999999999998874322110       135555556666666554

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=91.26  E-value=0.2  Score=44.90  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=30.7

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ++.|||+|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            689999999999999999999999999988764

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=91.25  E-value=0.16  Score=51.84  Aligned_cols=56  Identities=11%  Similarity=0.060  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe---CCCc--EEecCeEEEecCC
Q 018416           81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGI  137 (356)
Q Consensus        81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~vi~a~G~  137 (356)
                      ..+...+.+.+++.||+++.++.++++.. +++++..+..   .+|+  .+.++.||+|+|-
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  218 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEe-cCCEEEEEEEEECCCCcEEEEEcCEEEEccCc
Confidence            35667777778888999999999999976 4566655544   4665  4899999999884

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=91.21  E-value=0.15  Score=43.67  Aligned_cols=40  Identities=25%  Similarity=0.357  Sum_probs=31.4

Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      ++++++.++||++||++...           .+..|+..|+.||+.|+...
T Consensus       288 ~~~~~~~~~v~l~GDa~~g~-----------gv~~A~~sG~~aA~~I~~~L  327 (336)
T 3kkj_A          288 GALSDADLGIYVCGDWCLSG-----------RVEGAWLSGQEAARRLLEHL  327 (336)
T ss_dssp             SSEEETTTTEEECCGGGTTS-----------SHHHHHHHHHHHHHHHHHHT
T ss_pred             cceeeCCCCEEEEecccCCc-----------CHHHHHHHHHHHHHHHHHHh
Confidence            44566789999999987542           46789999999999987543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=91.18  E-value=0.23  Score=42.22  Aligned_cols=32  Identities=22%  Similarity=0.225  Sum_probs=29.4

Q ss_pred             cEEEECC-chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVIGG-GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      +|+|.|+ |++|..++..|.+.|.+|+++.|.+
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            6899995 9999999999999999999998864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.17  E-value=0.16  Score=45.10  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=31.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~   72 (356)
                      ..++|+|||+|-+|.++|..|++.|. +++++++..
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            35799999999999999999999997 899998864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.02  E-value=0.18  Score=47.72  Aligned_cols=35  Identities=26%  Similarity=0.209  Sum_probs=32.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++++++|+|+|.+|..+|..+...|.+|+++++.+
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            67899999999999999999999999999987753

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=91.00  E-value=0.23  Score=45.65  Aligned_cols=35  Identities=20%  Similarity=0.166  Sum_probs=30.2

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++++|+|.|+ |++|..++..|.+.|.+|+.+.|.+
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   53 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRP   53 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            5789999997 9999999999999999999998875

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=90.92  E-value=0.78  Score=40.82  Aligned_cols=59  Identities=19%  Similarity=0.142  Sum_probs=41.5

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCc---cCCHHHHHHHHHHHHhCCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMAR---LFTPKIASYYEEYYKSKGV   96 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~---~~d~~~~~~~~~~l~~~GV   96 (356)
                      .+|.++|.| +|.||.++|..|++.|.+|.++.+.+.....   .-+++-.+...+.+++.+.
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS   74 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCC
Confidence            578899998 5799999999999999999999887543221   0134444555555555443

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=90.90  E-value=0.12  Score=52.72  Aligned_cols=56  Identities=14%  Similarity=0.198  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHhC--CCEEEeCCeeeEEEEcCC--CcEEEEEe---CCCc--EEecCeEEEecC
Q 018416           81 PKIASYYEEYYKSK--GVKFVKGTVLSSFDVDSN--GKVVAVNL---RDGN--RLPTDMVVVGIG  136 (356)
Q Consensus        81 ~~~~~~~~~~l~~~--GV~v~~~~~v~~i~~~~~--g~v~~v~~---~~g~--~i~~D~vi~a~G  136 (356)
                      ..+...+.+.+++.  ||+++.++.++++..+++  |++..+..   .+|+  .+.++.||+|+|
T Consensus       166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATG  230 (662)
T 3gyx_A          166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACG  230 (662)
T ss_dssp             TSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCC
Confidence            35566677777776  999999999988876433  37766643   3454  588999999998

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=90.87  E-value=0.2  Score=44.28  Aligned_cols=36  Identities=25%  Similarity=0.291  Sum_probs=32.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ..+++.|||.|.+|.-+|..|.+.|.+|++..|.+.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            578999999999999999999999999999988654

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=90.85  E-value=0.23  Score=48.86  Aligned_cols=34  Identities=29%  Similarity=0.192  Sum_probs=31.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      -.++|||+|..|+-+|..|++.|.+|.++|+++.
T Consensus         6 ~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   39 (504)
T 1n4w_A            6 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   39 (504)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            3699999999999999999999999999998874

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=90.72  E-value=0.27  Score=47.61  Aligned_cols=58  Identities=16%  Similarity=0.240  Sum_probs=42.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------CccCCHHHHHHHHHHHHhCCCE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------ARLFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~~~d~~~~~~~~~~l~~~GV~   97 (356)
                      .++.|||.|++|+-+|..|++.|++|+-++..+.-.       .+..++.+.+.+.+.+++....
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~   86 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLS   86 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCee
Confidence            579999999999999999999999999997654311       1124566666666666555443

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=90.66  E-value=0.27  Score=44.44  Aligned_cols=36  Identities=28%  Similarity=0.337  Sum_probs=32.3

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ..++|+|.|+ |++|..++..|.+.|.+|+.+.|.+.
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            3689999997 99999999999999999999988765

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=90.57  E-value=0.63  Score=41.38  Aligned_cols=52  Identities=25%  Similarity=0.373  Sum_probs=39.9

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~   97 (356)
                      .+|+++|.| +|.+|.++|..|++.|.+|.++.|.+        ++..+.+.+.+++.+.+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~--------~~~~~~~~~~~~~~~~~   80 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSN--------AEVADALKNELEEKGYK   80 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC--------HHHHHHHHHHHHhcCCc
Confidence            578888888 57999999999999999999988743        34455566666666543

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=90.57  E-value=0.56  Score=45.45  Aligned_cols=61  Identities=20%  Similarity=0.321  Sum_probs=43.0

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------ccCCHHHHHHHHHHHHhCCCEEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------RLFTPKIASYYEEYYKSKGVKFV   99 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------~~~d~~~~~~~~~~l~~~GV~v~   99 (356)
                      .-++.|||.|+.|+-+|..|++.|++|+++++.+.-..       +...+.+.+.+.+.+...++++-
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~t   75 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFT   75 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEE
Confidence            45899999999999999999999999999998765321       11344555555544444444443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=90.53  E-value=0.28  Score=44.73  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..++++.|||.|.+|..+|..|...|.+|++++|.+
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            368999999999999999999999999999998753

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=90.53  E-value=0.35  Score=43.44  Aligned_cols=47  Identities=15%  Similarity=0.196  Sum_probs=38.2

Q ss_pred             HHHHHHHHHhc----CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           26 DANRLVNVMKS----CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        26 da~~i~~~l~~----~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      |...+...++.    ..+++++|+|+|-+|..+|..|.+.|.+|+++.|..
T Consensus       102 D~~G~~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          102 DGIGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            55556655543    257899999999999999999999999999998753

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=90.52  E-value=0.27  Score=44.92  Aligned_cols=36  Identities=25%  Similarity=0.144  Sum_probs=31.9

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .+++++|.|+ |++|..++..|.+.|.+|+++.|.+.
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            3578999996 99999999999999999999988754

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=90.52  E-value=0.34  Score=44.67  Aligned_cols=37  Identities=16%  Similarity=0.150  Sum_probs=33.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      .++++.|||-|.+|-.+|..|...|.+|+.+.+.+..
T Consensus       138 ~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~  174 (315)
T 3pp8_A          138 EEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKS  174 (315)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchh
Confidence            5789999999999999999999999999999887653

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=90.49  E-value=0.29  Score=44.49  Aligned_cols=36  Identities=28%  Similarity=0.368  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..++++.|||.|.+|..+|..|...|.+|+++++.+
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            368999999999999999999999999999998753

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=90.49  E-value=0.26  Score=44.51  Aligned_cols=34  Identities=26%  Similarity=0.222  Sum_probs=31.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      +++.|||.|.+|.-+|..|.+.|++|++++|.+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5799999999999999999999999999988654

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=90.46  E-value=0.77  Score=41.18  Aligned_cols=57  Identities=16%  Similarity=0.236  Sum_probs=40.6

Q ss_pred             CCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCccCCccCCH-HHHHHHHHHHHhCCCEEE
Q 018416           39 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTP-KIASYYEEYYKSKGVKFV   99 (356)
Q Consensus        39 ~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~-~~~~~~~~~l~~~GV~v~   99 (356)
                      .++++|.|+ |++|-.++..|.+.|.+|+++.|.+.  .. .++ +-.+.+ +.+...|++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~--~~-~~~~~~~~~~-~~l~~~~v~~v   60 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTI--TA-ANPETKEELI-DNYQSLGVILL   60 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSC--CS-SCHHHHHHHH-HHHHHTTCEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCc--cc-CChHHHHHHH-HHHHhCCCEEE
Confidence            368999996 99999999999999999999988752  11 233 322333 34556677665

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=90.45  E-value=0.15  Score=50.69  Aligned_cols=32  Identities=31%  Similarity=0.401  Sum_probs=30.0

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus        28 D~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           28 DYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             cEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            69999999999999999999 999999999854

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=90.37  E-value=0.22  Score=48.71  Aligned_cols=35  Identities=34%  Similarity=0.402  Sum_probs=31.9

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ..+|+++|+|+|.+|..+|..|+..|.+|.++++.
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~  297 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEID  297 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            36899999999999999999999999999988664

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=90.35  E-value=0.42  Score=43.10  Aligned_cols=48  Identities=6%  Similarity=0.136  Sum_probs=37.9

Q ss_pred             CHHHHHHHHHHHhcCCCCcEEEECCc-hHHHHHHHHHHHCCCcEEEEeeC
Q 018416           23 DLADANRLVNVMKSCSGGNAVVIGGG-YIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        23 ~~~da~~i~~~l~~~~~~~vvVvGgG-~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      |.....++.+... ..+++++|||.| .+|.-+|..|.+.|..||++++.
T Consensus       135 Tp~gv~~lL~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~  183 (276)
T 3ngx_A          135 TPRAVIDIMDYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK  183 (276)
T ss_dssp             HHHHHHHHHHHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             cHHHHHHHHHHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3445555555544 579999999976 68999999999999999999763

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=90.33  E-value=0.2  Score=45.72  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=30.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..|+|.|||.|.+|.-+|..|+ .|++|+++++.+
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            4689999999999999999999 999999998754

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=90.27  E-value=0.79  Score=41.13  Aligned_cols=58  Identities=22%  Similarity=0.355  Sum_probs=41.7

Q ss_pred             CCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEe
Q 018416           39 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK  100 (356)
Q Consensus        39 ~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~  100 (356)
                      .++++|.|+ |++|-.++..|.+.|.+|+++.|.+.-..   +++-.+.+ +.+...|++++.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~---~~~~~~~~-~~l~~~~v~~v~   62 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKAQLL-ESFKASGANIVH   62 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHHHHH-HHHHTTTCEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCccccc---CHHHHHHH-HHHHhCCCEEEE
Confidence            468999996 99999999999999999999988753210   23333322 345667777653

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=90.22  E-value=0.3  Score=46.11  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=32.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++++++|+|+|.+|..++..+.++|++|.++++.+
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            57899999999999999999999999999998764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.22  E-value=1.2  Score=39.66  Aligned_cols=59  Identities=12%  Similarity=-0.037  Sum_probs=41.3

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCcc---CCHHHHHHHHHHHHhCCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGV   96 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~---~d~~~~~~~~~~l~~~GV   96 (356)
                      .+|.++|.| +|.||.++|..|++.|.+|.++.+........   -..+-.+.....+++.+.
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR   71 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC
Confidence            578899998 57899999999999999999998874432210   124444455555665553

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=90.20  E-value=0.24  Score=46.56  Aligned_cols=35  Identities=29%  Similarity=0.394  Sum_probs=31.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++++|+|+|+|.+|..++..+...|.+|+++++.+
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            46899999999999999999999999999998754

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=90.18  E-value=1.2  Score=39.53  Aligned_cols=59  Identities=14%  Similarity=0.045  Sum_probs=41.7

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCc----cCCHHHHHHHHHHHHhCCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMAR----LFTPKIASYYEEYYKSKGV   96 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----~~d~~~~~~~~~~l~~~GV   96 (356)
                      .+|.++|.| ++.||.++|..|++.|.+|.++.+.......    .-+++-.+...+.+++.+.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR   73 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC
Confidence            578888988 5789999999999999999999885432110    0145555555566666554

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=90.12  E-value=0.57  Score=42.27  Aligned_cols=34  Identities=32%  Similarity=0.387  Sum_probs=31.4

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .+++++|+| +|.+|..++..|.+.|.+|+++.|.
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            578999999 8999999999999999999998875

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=90.09  E-value=0.24  Score=47.58  Aligned_cols=35  Identities=29%  Similarity=0.336  Sum_probs=32.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+++++|+|.|.+|..+|..|+..|.+|+++++.+
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            68999999999999999999999999999987653

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=90.02  E-value=0.25  Score=42.42  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=32.7

Q ss_pred             CcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           40 GNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        40 ~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      ++++|.| +|++|..++..|.+.|.+|+++.|.+.-..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~   42 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIK   42 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccch
Confidence            6899999 599999999999999999999999865443

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=89.92  E-value=0.35  Score=42.11  Aligned_cols=34  Identities=15%  Similarity=0.033  Sum_probs=30.4

Q ss_pred             CcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      |+++|.|+ |.+|..++..|.+.|.+|+++.|.+.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~   36 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQA   36 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            46889985 99999999999999999999988754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=89.88  E-value=0.34  Score=41.37  Aligned_cols=32  Identities=22%  Similarity=0.247  Sum_probs=29.2

Q ss_pred             cEEEECC-chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVIGG-GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      +++|.|+ |++|..++..|.+.|.+|+++.|.+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            5899997 9999999999999999999998764

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=89.87  E-value=0.36  Score=41.63  Aligned_cols=33  Identities=18%  Similarity=0.183  Sum_probs=29.8

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ..++.|||+|.+|..+|..|.+.|.+|++++|.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~   60 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRN   60 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            468999999999999999999999999998765

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=89.86  E-value=0.29  Score=48.10  Aligned_cols=34  Identities=32%  Similarity=0.311  Sum_probs=31.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      -.++|||+|..|+-+|..|++.|.+|.++|+++.
T Consensus        12 ~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A           12 VPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            3699999999999999999999999999999864

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=89.85  E-value=1.2  Score=38.80  Aligned_cols=51  Identities=22%  Similarity=0.194  Sum_probs=38.0

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCE
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~   97 (356)
                      .+|.++|.|+ |.+|.++|..|++.|.+|.++.|.+         +-.+.+.+.+++.+-+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~---------~~~~~~~~~~~~~~~~   59 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINA---------EAAEAVAKQIVADGGT   59 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH---------HHHHHHHHHHHhcCCc
Confidence            5788999984 8999999999999999999987642         3334445556555433

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=89.82  E-value=0.23  Score=45.09  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=31.3

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .++.|||+|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~   36 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAK   36 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCE
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccC
Confidence            4799999999999999999999999999998753

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=89.81  E-value=1.4  Score=39.88  Aligned_cols=59  Identities=15%  Similarity=0.067  Sum_probs=42.6

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccC----CccCCHHHHHHHHHHHHhCCCE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCM----ARLFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l----~~~~d~~~~~~~~~~l~~~GV~   97 (356)
                      .+|.++|.| ++.||.++|..|++.|.+|.++.+.+..-    .. -+++-.+...+.+++.|.+
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   90 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPM-STPDDLAETVRQVEALGRR   90 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCC-CCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccc-cCHHHHHHHHHHHHhcCCc
Confidence            578888888 47899999999999999999998874421    11 2355555556666666543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=89.81  E-value=0.24  Score=44.92  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=29.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .++.|||+|.+|.-+|..|.+.|.+|+++.|.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            47999999999999999999999999999764

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=89.80  E-value=0.33  Score=44.86  Aligned_cols=36  Identities=25%  Similarity=0.384  Sum_probs=30.1

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCC-CcEEEEeeCCc
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINK-INVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G-~~Vtlv~~~~~   73 (356)
                      .+++++|.|+ |++|..++..|.+.| .+|+++.|.+.
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   82 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD   82 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            4678999997 999999999999999 99999987653

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=89.69  E-value=0.36  Score=49.02  Aligned_cols=53  Identities=19%  Similarity=0.056  Sum_probs=42.9

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK   94 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~   94 (356)
                      .++|+|+|..+.-+|..|++.|++|.++++++++.....+..+ ..+.+++++.
T Consensus        10 D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l-~~l~~w~~~~   62 (650)
T 1vg0_A           10 DVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSF-SGLLSWLKEY   62 (650)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECH-HHHHHHHHHT
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccH-HHHHHHHHHh
Confidence            7999999999999999999999999999999998776544443 3455555543

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=89.67  E-value=0.32  Score=47.66  Aligned_cols=52  Identities=15%  Similarity=0.124  Sum_probs=41.9

Q ss_pred             CCcEEEECCchHHHH-HHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCC
Q 018416           39 GGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT  102 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE-~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~  102 (356)
                      .+++.|||-|-+|+. +|..|.++|.+|+..+....       + .    .+.|++.|+++..+.
T Consensus        19 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~-------~-~----~~~l~~~gi~~~~g~   71 (491)
T 2f00_A           19 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN-------P-V----TQQLMNLGATIYFNH   71 (491)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC-------H-H----HHHHHHTTCEEESSC
T ss_pred             CCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCC-------H-H----HHHHHHCCCEEECCC
Confidence            578999999999998 99999999999999877541       1 1    235778899987664

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=89.66  E-value=0.28  Score=47.79  Aligned_cols=52  Identities=19%  Similarity=0.109  Sum_probs=41.8

Q ss_pred             CCcEEEECCchHHHH-HHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCC
Q 018416           39 GGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT  102 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE-~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~  102 (356)
                      .+++.|||-|-+|+. +|..|.++|.+|+..+....       +     ..+.|++.|+++..+.
T Consensus        18 ~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~-------~-----~~~~l~~~gi~~~~g~   70 (475)
T 1p3d_A           18 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG-------V-----VTQRLAQAGAKIYIGH   70 (475)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS-------H-----HHHHHHHTTCEEEESC
T ss_pred             CCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCC-------H-----HHHHHHhCCCEEECCC
Confidence            468999999999997 99999999999999987542       1     1235778899887664

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=89.65  E-value=0.28  Score=47.40  Aligned_cols=36  Identities=31%  Similarity=0.280  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..+|+++|+|.|.+|..+|..++..|.+|++.++.+
T Consensus       245 L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          245 MAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            378999999999999999999999999999987643

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=89.64  E-value=0.24  Score=45.91  Aligned_cols=33  Identities=24%  Similarity=0.145  Sum_probs=30.2

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ..++.|||+|.+|..+|..|++.|.+|+++.+.
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            368999999999999999999999999999764

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=89.63  E-value=1  Score=40.54  Aligned_cols=57  Identities=19%  Similarity=0.370  Sum_probs=41.2

Q ss_pred             CCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEe
Q 018416           39 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK  100 (356)
Q Consensus        39 ~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~  100 (356)
                      .++++|.|+ |++|-.++..|.+.|.+|+++.|.+.-    .+++-.+.+ +.+...|++++.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~----~~~~~~~~~-~~~~~~~~~~~~   61 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV----SNIDKVQML-LYFKQLGAKLIE   61 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS----SCHHHHHHH-HHHHTTTCEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcc----cchhHHHHH-HHHHhCCeEEEe
Confidence            468999995 999999999999999999999887531    123333333 234566777653

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=89.60  E-value=1.5  Score=39.07  Aligned_cols=60  Identities=15%  Similarity=0.134  Sum_probs=42.2

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCC---ccCCHHHHHHHHHHHHhCCCE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMA---RLFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~---~~~d~~~~~~~~~~l~~~GV~   97 (356)
                      .+|+++|.| +|.+|.++|..|++.|.+|.++.|.+....   ...+.+-.+...+.+++.|.+
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRR   72 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCe
Confidence            578899998 578999999999999999999988643211   012344445555566665543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=89.59  E-value=0.65  Score=42.81  Aligned_cols=47  Identities=11%  Similarity=0.258  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhc----CCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC
Q 018416           26 DANRLVNVMKS----CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   72 (356)
Q Consensus        26 da~~i~~~l~~----~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~   72 (356)
                      |..-+...++.    ..+++++|+|+|-+|--+|..|++.|. +|+++.|.+
T Consensus       137 D~~Gf~~~L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          137 DGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             HHHHHHHHHHHTTCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CHHHHHHHHHHcCCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            55555555543    257899999999999999999999998 899998864

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=89.54  E-value=1.1  Score=40.27  Aligned_cols=52  Identities=21%  Similarity=0.394  Sum_probs=38.5

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~   97 (356)
                      .+|+++|.| +|.+|.++|..|++.|.+|.++.+.+.        ...+.+.+.+++.|.+
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~--------~~~~~~~~~~~~~~~~   98 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE--------GDANETKQYVEKEGVK   98 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH--------HHHHHHHHHHHTTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--------HHHHHHHHHHHhcCCc
Confidence            568889988 589999999999999999999887542        2334445555655543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=89.52  E-value=0.88  Score=39.59  Aligned_cols=50  Identities=28%  Similarity=0.287  Sum_probs=37.7

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV   96 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV   96 (356)
                      .+|+++|.| +|.+|.++|..|++.|.+|.++.|.+         +-.+.+.+.+++.+.
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~---------~~~~~~~~~~~~~~~   54 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQ---------ASAEKFENSMKEKGF   54 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH---------HHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH---------HHHHHHHHHHHhcCC
Confidence            467888887 58999999999999999999987643         233445556666554

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=89.49  E-value=0.36  Score=44.17  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=31.6

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+++++|.|+ |++|..++..|.+.|.+|+++.|.+
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            5678999996 9999999999999999999998854

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=89.49  E-value=0.36  Score=46.29  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=32.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++++|.|+|+|.+|.+++..+.++|++|.++++.+
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~   68 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDP   68 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            67899999999999999999999999999997653

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=89.48  E-value=0.41  Score=44.44  Aligned_cols=35  Identities=20%  Similarity=0.132  Sum_probs=32.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++++.|||.|.+|..+|..|+..|.+|+++++.+
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  183 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTR  183 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            56899999999999999999999999999998764

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=89.45  E-value=0.33  Score=44.46  Aligned_cols=35  Identities=20%  Similarity=0.168  Sum_probs=31.9

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      -.+|.|||.|.+|.-+|..|++.|++|+++++.+.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999988654

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=89.44  E-value=0.38  Score=43.82  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=31.3

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+++++|.|+ |++|..++..|.+.|.+|+++.|.+
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   45 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA   45 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4688999997 9999999999999999999988753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=89.40  E-value=0.36  Score=47.02  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=30.8

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .-+++|+|+|-+|..+|..|...|++|+++++.+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4589999999999999999999999999998643

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=89.40  E-value=0.45  Score=41.29  Aligned_cols=34  Identities=29%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .+++++|.|+ |.+|.++|..|.+.|.+|.++.|.
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   40 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5788999985 899999999999999999998775

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=89.37  E-value=0.91  Score=40.11  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=31.2

Q ss_pred             CCCcEEEECC---chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGG---GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGg---G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+|+++|.|+   |.+|.++|..|++.|.+|+++.|.+
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   45 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence            5688999997   6999999999999999999998765

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.33  E-value=0.31  Score=46.79  Aligned_cols=75  Identities=15%  Similarity=0.211  Sum_probs=50.5

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  118 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v  118 (356)
                      ..+|+|+|.|.+|..+|..|.+.|.+|+++++.+         +..    +.+++.|++++.+....       .  ..+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~---------~~v----~~~~~~g~~vi~GDat~-------~--~~L   61 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP---------DHI----ETLRKFGMKVFYGDATR-------M--DLL   61 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH---------HHH----HHHHHTTCCCEESCTTC-------H--HHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---------HHH----HHHHhCCCeEEEcCCCC-------H--HHH
Confidence            4689999999999999999999999999998653         332    23456677766553210       0  000


Q ss_pred             EeCCCcEEecCeEEEecCC
Q 018416          119 NLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus       119 ~~~~g~~i~~D~vi~a~G~  137 (356)
                      . .-| .-.+|.||++++.
T Consensus        62 ~-~ag-i~~A~~viv~~~~   78 (413)
T 3l9w_A           62 E-SAG-AAKAEVLINAIDD   78 (413)
T ss_dssp             H-HTT-TTTCSEEEECCSS
T ss_pred             H-hcC-CCccCEEEECCCC
Confidence            0 011 1258999999874

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=89.32  E-value=0.53  Score=41.42  Aligned_cols=37  Identities=16%  Similarity=0.254  Sum_probs=31.7

Q ss_pred             CCCcEEEECC-----------------chHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           38 SGGNAVVIGG-----------------GYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        38 ~~~~vvVvGg-----------------G~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      .+++|+|-||                 |.+|..+|..+.++|.+|+++.+...+
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~   55 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRAL   55 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSC
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4788888887                 589999999999999999999987553

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=89.32  E-value=0.29  Score=48.03  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=32.5

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..+++|+|+|.|.+|..+|..++..|.+|+++++.+
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            368999999999999999999999999999887653

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=89.31  E-value=0.23  Score=48.34  Aligned_cols=35  Identities=26%  Similarity=0.237  Sum_probs=31.7

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      -++|.|||+|.+|.-+|..|++.|++|+++++.+.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            36799999999999999999999999999987654

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=89.23  E-value=0.42  Score=46.87  Aligned_cols=53  Identities=13%  Similarity=0.056  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  138 (356)
                      ...++...++.|+++++++.|++|+.+ ++.+ .|.+.+|+++++|.||++++..
T Consensus       215 ~~l~~~l~~~lg~~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~VI~a~p~~  267 (520)
T 1s3e_A          215 GQVSERIMDLLGDRVKLERPVIYIDQT-RENV-LVETLNHEMYEAKYVISAIPPT  267 (520)
T ss_dssp             HHHHHHHHHHHGGGEESSCCEEEEECS-SSSE-EEEETTSCEEEESEEEECSCGG
T ss_pred             HHHHHHHHHHcCCcEEcCCeeEEEEEC-CCeE-EEEECCCeEEEeCEEEECCCHH
Confidence            333444444458899999999999864 4444 4788899999999999999853

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=89.23  E-value=1.1  Score=39.53  Aligned_cols=50  Identities=12%  Similarity=0.117  Sum_probs=37.5

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV   96 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV   96 (356)
                      .+|.++|.| +|.+|.++|..|++.|.+|.++.|..         +-.+.+.+.+++.|.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~---------~~~~~~~~~~~~~~~   60 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTV---------ERLEDVAKQVTDTGR   60 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCH---------HHHHHHHHHHHhcCC
Confidence            578899988 47899999999999999999987642         333444555666554

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=89.20  E-value=0.34  Score=43.83  Aligned_cols=34  Identities=15%  Similarity=0.147  Sum_probs=28.9

Q ss_pred             CCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           39 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      +++++|.|+ |++|..++..|.+.|.+|+++.|.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRR   36 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCC
Confidence            478999996 9999999999999999999998753

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=89.18  E-value=0.42  Score=45.01  Aligned_cols=36  Identities=28%  Similarity=0.352  Sum_probs=32.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      +++++.|+|+|.+|..++..+.++|++|.++++.+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            578999999999999999999999999999987643

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=89.17  E-value=0.15  Score=50.85  Aligned_cols=43  Identities=23%  Similarity=0.237  Sum_probs=35.0

Q ss_pred             EEEeccccc-CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          155 IKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       155 I~vd~~l~t-s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      |..|+.++| +.+++|+|||++....          .+..|..+|..+|+.|+.
T Consensus       497 i~~~~~~~~~~~~gly~~GegaG~a~----------gi~~Aa~~G~~~a~~i~~  540 (549)
T 3nlc_A          497 IKRGKDFQSVNLKGFYPAGEGAGYAG----------GILSAGIDGIKVAEAVAR  540 (549)
T ss_dssp             CCCTTTTSCTTCBTEEECHHHHTSCC----------SHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCceECCcCCEEEccccCChhh----------HHHHHHHHHHHHHHHHHH
Confidence            678899999 8999999999998753          355677788888887753

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=89.16  E-value=0.61  Score=42.27  Aligned_cols=46  Identities=20%  Similarity=0.276  Sum_probs=36.8

Q ss_pred             HHHHHHHHHh----cCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416           26 DANRLVNVMK----SCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   71 (356)
Q Consensus        26 da~~i~~~l~----~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~   71 (356)
                      |..-+...++    ...+++++|+|+|-+|-.++..|.+.|. +|+++.|.
T Consensus       110 D~~G~~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~  160 (283)
T 3jyo_A          110 DVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_dssp             HHHHHHHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CHHHHHHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence            5555555553    2367899999999999999999999998 69998765

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=89.11  E-value=0.44  Score=42.16  Aligned_cols=35  Identities=26%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             CCCcEEEECC-ch--HHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGG-GY--IGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGg-G~--iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+|+++|.|+ |.  +|.++|..|++.|.+|.++.|.+
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            5788999996 67  99999999999999999987753

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=89.04  E-value=0.5  Score=41.42  Aligned_cols=35  Identities=29%  Similarity=0.330  Sum_probs=31.4

Q ss_pred             CCCcEEEECC-----------------chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGG-----------------GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGg-----------------G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+++++|-||                 |-+|..+|..|+++|.+|+++.+..
T Consensus         7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~   58 (226)
T 1u7z_A            7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPV   58 (226)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCc
Confidence            5789999998                 7899999999999999999997654

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=89.01  E-value=0.71  Score=41.16  Aligned_cols=39  Identities=23%  Similarity=0.244  Sum_probs=33.5

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      .+|.++|.| ++.+|.++|..|++.|.+|.++.|...-..
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~   44 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANP   44 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCT
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhh
Confidence            578889988 578999999999999999999998865443

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=89.00  E-value=0.86  Score=40.10  Aligned_cols=36  Identities=28%  Similarity=0.389  Sum_probs=31.2

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .+|.++|.| +|.+|.++|..|++.|.+|.++.|.+.
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   42 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGE   42 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578888888 578999999999999999999988643

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=88.98  E-value=0.47  Score=43.00  Aligned_cols=35  Identities=29%  Similarity=0.372  Sum_probs=31.1

Q ss_pred             CCCCcEEEECCc-hHHHHHHHHHHHCCCcEEEEeeC
Q 018416           37 CSGGNAVVIGGG-YIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        37 ~~~~~vvVvGgG-~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ..+++++|||.| .+|.-+|..|.+.|..||++++.
T Consensus       159 l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~  194 (286)
T 4a5o_A          159 LYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF  194 (286)
T ss_dssp             CTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            378999999955 58999999999999999999764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=88.95  E-value=0.32  Score=43.06  Aligned_cols=35  Identities=20%  Similarity=0.252  Sum_probs=31.0

Q ss_pred             CCCcEEEECC-ch-HHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGG-GY-IGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGg-G~-iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+|+++|.|+ |. +|.++|..|++.|.+|.++.|..
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            5789999998 74 99999999999999999987753

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=88.93  E-value=0.48  Score=41.18  Aligned_cols=34  Identities=24%  Similarity=0.244  Sum_probs=30.5

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++++++|.|+ |.+|.++|..|.+.|.+|.++.|.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5788999986 899999999999999999998765

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=88.91  E-value=0.26  Score=44.51  Aligned_cols=34  Identities=26%  Similarity=0.226  Sum_probs=31.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ++|.|||.|.+|.-+|..|.+.|++|++++|.+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999988754

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=88.88  E-value=0.29  Score=43.77  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=30.3

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++++++|.|| |++|..++..|.+.|.+|+.+.|.
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   45 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ   45 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc
Confidence            5788999985 999999999999999999999875

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=88.88  E-value=0.76  Score=41.61  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhc----CCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416           26 DANRLVNVMKS----CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   71 (356)
Q Consensus        26 da~~i~~~l~~----~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~   71 (356)
                      |..-+...++.    ..+++++|+|+|-+|--++..|.+.|. +|+++.|.
T Consensus       109 D~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~  159 (281)
T 3o8q_A          109 DGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRT  159 (281)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             HHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence            45555554442    257899999999999999999999996 89999774

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=88.87  E-value=0.47  Score=43.34  Aligned_cols=50  Identities=26%  Similarity=0.314  Sum_probs=37.0

Q ss_pred             CHHHHHHHHHHH-hcCCCCcEEEECCc-hHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           23 DLADANRLVNVM-KSCSGGNAVVIGGG-YIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        23 ~~~da~~i~~~l-~~~~~~~vvVvGgG-~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      |..-+.++.+.. ....+++++|||.| .+|.-+|..|.+.|..||++++..
T Consensus       148 Tp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T  199 (300)
T 4a26_A          148 TAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT  199 (300)
T ss_dssp             HHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS
T ss_pred             CHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence            334444444332 23478999999965 589999999999999999998743

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=88.85  E-value=0.31  Score=44.33  Aligned_cols=35  Identities=20%  Similarity=0.022  Sum_probs=32.1

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .+++.|||.|.+|.-+|..|++.|++|+++++.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            36899999999999999999999999999988764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=88.85  E-value=1.4  Score=39.17  Aligned_cols=52  Identities=23%  Similarity=0.286  Sum_probs=38.8

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~   97 (356)
                      .+|.++|.| +|.+|.++|..|++.|.+|.++.+.+        .+-.+.+.+.+++.|.+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~--------~~~~~~~~~~l~~~~~~   82 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA--------AERAQAVVSEIEQAGGR   82 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC--------HHHHHHHHHHHHhcCCc
Confidence            578899998 57899999999999999999886543        23344455566665543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=88.84  E-value=0.27  Score=48.08  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=31.2

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..+|.|||.|++|+-+|..|++.|.+|+++++.+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999998753

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=88.80  E-value=0.31  Score=41.58  Aligned_cols=32  Identities=16%  Similarity=0.197  Sum_probs=29.3

Q ss_pred             cEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVIG-GGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++.|+| +|.+|..+|..|.+.|.+|+++.|.+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            689999 99999999999999999999998753

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=88.78  E-value=0.43  Score=43.02  Aligned_cols=34  Identities=32%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             CcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ++|+|.|+ |++|-.++..|.+.|.+|+++.|.+.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   35 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSS   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            46899997 99999999999999999999988654

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=88.76  E-value=0.56  Score=42.41  Aligned_cols=45  Identities=18%  Similarity=0.192  Sum_probs=36.0

Q ss_pred             HHHHHHHHHh----cCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           26 DANRLVNVMK----SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        26 da~~i~~~l~----~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      |...+...++    ...+++++|+|+|-+|..+|..|.+.| +|+++.|.
T Consensus       111 d~~G~~~~L~~~~~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          111 DGIGARMALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             HHHHHHHHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CHHHHHHHHHHhCCCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            5555555543    235789999999999999999999999 99998765

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=88.76  E-value=0.48  Score=42.99  Aligned_cols=36  Identities=28%  Similarity=0.331  Sum_probs=31.9

Q ss_pred             CCCCcEEEECCch-HHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGgG~-iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..+++++|||.|. +|.-+|..|.+.|..||++++..
T Consensus       157 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t  193 (288)
T 1b0a_A          157 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT  193 (288)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            4789999999995 69999999999999999997543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=88.74  E-value=1.3  Score=40.17  Aligned_cols=50  Identities=18%  Similarity=0.216  Sum_probs=37.7

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV   96 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV   96 (356)
                      .+|.++|.| +|.+|.++|..|++.|.+|.++.|.+         +-.+.+.+.+++.+.
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~---------~~~~~~~~~l~~~~~   80 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQ---------PALEQAVNGLRGQGF   80 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCC
Confidence            578899998 57899999999999999999987643         223344555665554

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=88.71  E-value=0.43  Score=43.64  Aligned_cols=35  Identities=20%  Similarity=0.207  Sum_probs=30.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~   72 (356)
                      +..+++|||+|.+|.-+|..|++.|.  +|+++++.+
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            34689999999999999999999998  999998753

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=88.70  E-value=0.3  Score=47.39  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=30.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+|.|||.|++|.-+|..|++.|.+|+++++.+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            479999999999999999999999999998764

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=88.68  E-value=0.52  Score=46.07  Aligned_cols=36  Identities=19%  Similarity=0.211  Sum_probs=33.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHC-CC-cEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVIN-KI-NVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~-G~-~Vtlv~~~~~   73 (356)
                      +-.+|.|||.|+.|.-+|..|++. |+ +|+++++.+.
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            457899999999999999999999 99 9999998876

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=88.68  E-value=0.36  Score=46.50  Aligned_cols=35  Identities=31%  Similarity=0.365  Sum_probs=32.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+++++|+|.|.+|..+|..|...|.+|+++++.+
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            68999999999999999999999999999988753

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=88.67  E-value=0.31  Score=47.45  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=32.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      -++|.|||+|..|.-+|..|++.|.+|+++++.+.
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            37899999999999999999999999999988765

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=88.67  E-value=0.47  Score=43.98  Aligned_cols=35  Identities=20%  Similarity=0.151  Sum_probs=32.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++++.|||.|.+|..+|..|...|.+|+++++.+
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            56789999999999999999999999999998764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=88.64  E-value=0.53  Score=46.83  Aligned_cols=60  Identities=15%  Similarity=0.163  Sum_probs=35.5

Q ss_pred             eEEeCCHHHHHHHHHHHhcC-CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416           18 VCYLRDLADANRLVNVMKSC-SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus        18 v~~l~~~~da~~i~~~l~~~-~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      ++.+.+.++..++.+.+... +.++++|+|+|..|..+|..|.+.|.+|++++..+.....
T Consensus       326 L~v~g~~~~l~~~~~~~~~~~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~  386 (565)
T 4gx0_A          326 LVLAGTKSQLAALEYLIGEAPEDELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCN  386 (565)
T ss_dssp             ---------------------CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCC
T ss_pred             EEEEeCHHHHHHHHHHhcCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhh
Confidence            34444455555555544321 2389999999999999999999999999999998875543

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=88.59  E-value=0.51  Score=43.85  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=32.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .++++.|||.|.+|-.+|..|...|.+|+++++.+.
T Consensus       163 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~  198 (333)
T 3ba1_A          163 SGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKK  198 (333)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCch
Confidence            578999999999999999999999999999987654

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=88.57  E-value=0.98  Score=41.09  Aligned_cols=33  Identities=18%  Similarity=0.188  Sum_probs=28.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|-+||-|..|.-+|..|.+.|++|++++|.+
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~   38 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA   38 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            689999999999999999999999999998764

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=88.56  E-value=0.35  Score=44.04  Aligned_cols=34  Identities=18%  Similarity=0.108  Sum_probs=30.8

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++|.|||.|.+|.-+|..|.+.|.+|+++++.+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999997653

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=88.55  E-value=0.19  Score=43.80  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=29.5

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++++|+|+|.+|..+|..|.+.|. |+++++.+
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            4789999999999999999999999 99998754

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=88.55  E-value=0.57  Score=44.49  Aligned_cols=38  Identities=13%  Similarity=-0.004  Sum_probs=34.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      ++.+++|+|+|.++..+|..++..|++||+++.++.+.
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~  240 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFA  240 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhc
Confidence            45689999999999999999999999999999987754

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=88.53  E-value=0.54  Score=43.12  Aligned_cols=35  Identities=26%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++++.|||.|.+|-.+|..|...|.+|+.+++.+
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP  175 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            57899999999999999999999999999988754

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=88.49  E-value=1.4  Score=39.08  Aligned_cols=34  Identities=21%  Similarity=0.176  Sum_probs=30.4

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .+|+++|.| +|.+|.++|..|.+.|.+|+++.|.
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~   64 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN   64 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence            568899998 6899999999999999999998775

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=88.39  E-value=1.2  Score=40.11  Aligned_cols=53  Identities=21%  Similarity=0.213  Sum_probs=39.1

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~   97 (356)
                      .+|+++|.| +|.||.++|..|++.|.+|.++.+..       +.+-.+.+.+.+++.|.+
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~-------~~~~~~~~~~~~~~~~~~  101 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPA-------EEEDAQQVKALIEECGRK  101 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGG-------GHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc-------chhHHHHHHHHHHHcCCc
Confidence            578899998 57999999999999999999887642       233344555566665543

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=88.38  E-value=0.56  Score=43.13  Aligned_cols=35  Identities=17%  Similarity=0.101  Sum_probs=32.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++++.|||.|.+|-.+|..|...|.+|+.+++.+
T Consensus       141 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (313)
T 2ekl_A          141 AGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD  175 (313)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            67899999999999999999999999999988754

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=88.37  E-value=0.42  Score=43.23  Aligned_cols=48  Identities=19%  Similarity=0.144  Sum_probs=37.7

Q ss_pred             HHHHHHHHHhc----CCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCc
Q 018416           26 DANRLVNVMKS----CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH   73 (356)
Q Consensus        26 da~~i~~~l~~----~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~   73 (356)
                      |..-+...++.    ..+++++|+|+|-+|--++..|.+.|. +|+++.|.+.
T Consensus       100 D~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          100 DGIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             HHHHHHHHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             hHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            44444444432    257899999999999999999999998 8999988754

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=88.36  E-value=0.47  Score=44.08  Aligned_cols=36  Identities=19%  Similarity=0.189  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..++++.|||.|.+|..+|..|...|.+|+++++.+
T Consensus       144 l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~  179 (333)
T 2d0i_A          144 LYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHR  179 (333)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            467899999999999999999999999999988764

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=88.35  E-value=0.57  Score=43.25  Aligned_cols=50  Identities=18%  Similarity=0.140  Sum_probs=39.0

Q ss_pred             CCHHHHHHHHHHH---------h-cCCCCcEEEECCch-HHHHHHHHHHHCCCcEEEEeeC
Q 018416           22 RDLADANRLVNVM---------K-SCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        22 ~~~~da~~i~~~l---------~-~~~~~~vvVvGgG~-iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .+..-+.++.+.+         . ...+++++|||+|. +|--+|..|...|.+||++.|.
T Consensus       150 cTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          150 CTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             HHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            3455555655552         2 34789999999995 5999999999999999999775

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=88.34  E-value=0.45  Score=42.62  Aligned_cols=36  Identities=11%  Similarity=0.194  Sum_probs=31.1

Q ss_pred             CCCCcEEEECC-ch--HHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGG-GY--IGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGg-G~--iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..+|.++|.|+ |.  +|.++|..|++.|.+|.++.+..
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            35788888885 56  99999999999999999998865

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=88.33  E-value=1.5  Score=39.17  Aligned_cols=51  Identities=16%  Similarity=0.113  Sum_probs=37.8

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV   96 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV   96 (356)
                      .+|.++|.| +|.||.++|..|++.|.+|.++.+++        ++-.+.+.+.+++.|.
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~--------~~~~~~~~~~~~~~~~   79 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGD--------AEGVAPVIAELSGLGA   79 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC--------HHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCC--------HHHHHHHHHHHHhcCC
Confidence            567888888 57999999999999999999987642        3334445555666553

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=88.28  E-value=0.44  Score=44.16  Aligned_cols=36  Identities=22%  Similarity=0.236  Sum_probs=33.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .++++.|||-|.+|-.+|..|...|.+|+.+.+.+.
T Consensus       139 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~  174 (324)
T 3hg7_A          139 KGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGR  174 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChH
Confidence            578999999999999999999999999999988764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=88.25  E-value=0.47  Score=43.28  Aligned_cols=34  Identities=24%  Similarity=0.213  Sum_probs=31.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~   71 (356)
                      .+++++|+|+|.+|-.+|..|.+.|. +|+++.|.
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            57899999999999999999999998 89999775

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=88.25  E-value=0.47  Score=43.16  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=30.6

Q ss_pred             CcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|.||| .|.+|..+|..|++.|.+|+++.+.+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            5899999 99999999999999999999998764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=88.24  E-value=1.2  Score=39.36  Aligned_cols=37  Identities=14%  Similarity=0.029  Sum_probs=32.1

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      .+|+++|.| +|.+|.++|..|++.|.+|.++.|....
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   64 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKP   64 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            577888887 5899999999999999999999887543

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=88.23  E-value=1.4  Score=40.12  Aligned_cols=61  Identities=13%  Similarity=0.054  Sum_probs=41.4

Q ss_pred             CCCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCc---cCCHHHHHHHHHHHHhCCCE
Q 018416           37 CSGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMAR---LFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        37 ~~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~---~~d~~~~~~~~~~l~~~GV~   97 (356)
                      ..+|.++|.| +|.||.++|..|++.|.+|.++.+.......   .-+++-.+...+.+++.|.+
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRR  108 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCe
Confidence            3567788887 5799999999999999999999776332110   01344445555666666543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=88.21  E-value=0.76  Score=41.63  Aligned_cols=47  Identities=17%  Similarity=0.136  Sum_probs=38.0

Q ss_pred             HHHHHHHHHhc----CCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC
Q 018416           26 DANRLVNVMKS----CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   72 (356)
Q Consensus        26 da~~i~~~l~~----~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~   72 (356)
                      |..-+...++.    ..+++++|+|+|-+|--++..|.+.|. +|+++.|..
T Consensus       105 D~~G~~~~L~~~~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          105 DYIGFGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             HHHHHHHHHHHTTCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             cHHHHHHHHHHcCCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            55566555543    257899999999999999999999998 899998753

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=88.21  E-value=0.42  Score=47.96  Aligned_cols=35  Identities=29%  Similarity=0.356  Sum_probs=31.7

Q ss_pred             CcEEEECCchHHHHHHHHHHH-CCCcEEEEeeCCcc
Q 018416           40 GNAVVIGGGYIGMECAASLVI-NKINVTMVFPEAHC   74 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~-~G~~Vtlv~~~~~~   74 (356)
                      -.++|||+|..|+-+|..|++ .|.+|.++|+++..
T Consensus        25 ~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            369999999999999999999 79999999998653

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=88.18  E-value=0.3  Score=43.58  Aligned_cols=31  Identities=13%  Similarity=0.260  Sum_probs=28.9

Q ss_pred             cEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           41 NAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      +++|.|+ |++|..++..|.+.|.+|+.+.|.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK   38 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence            8999995 999999999999999999999884

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=88.18  E-value=0.31  Score=44.81  Aligned_cols=34  Identities=15%  Similarity=0.204  Sum_probs=30.9

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++|.|||.|.+|.-+|..|.+.|.+|+++++.+
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            4589999999999999999999999999997653

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=88.17  E-value=0.32  Score=49.34  Aligned_cols=56  Identities=16%  Similarity=0.147  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhC-CC-EEEeCCeeeEEEEcCC--CcEEEEEe---CCCc--EEecCeEEEecCC
Q 018416           82 KIASYYEEYYKSK-GV-KFVKGTVLSSFDVDSN--GKVVAVNL---RDGN--RLPTDMVVVGIGI  137 (356)
Q Consensus        82 ~~~~~~~~~l~~~-GV-~v~~~~~v~~i~~~~~--g~v~~v~~---~~g~--~i~~D~vi~a~G~  137 (356)
                      .+...+.+.+++. || +++.++.++++..+++  +++..+..   .+|+  .+.++.||+|+|.
T Consensus       152 ~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG  216 (643)
T 1jnr_A          152 SYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGG  216 (643)
T ss_dssp             THHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCc
Confidence            4556667777777 99 9999999999986333  27766543   5665  6899999999983

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=88.15  E-value=0.95  Score=41.61  Aligned_cols=47  Identities=19%  Similarity=0.326  Sum_probs=38.4

Q ss_pred             HHHHHHHHHhc----CCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC
Q 018416           26 DANRLVNVMKS----CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   72 (356)
Q Consensus        26 da~~i~~~l~~----~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~   72 (356)
                      |..-+...+++    ..+++++|+|+|-+|--++..|.+.|. +|+++.|.+
T Consensus       131 D~~Gf~~~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~  182 (312)
T 3t4e_A          131 DGTGHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD  182 (312)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             cHHHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            55666665543    257899999999999999999999998 799998864

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=88.13  E-value=0.5  Score=42.15  Aligned_cols=35  Identities=14%  Similarity=0.238  Sum_probs=31.6

Q ss_pred             CCCcEEEECC---chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGG---GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGg---G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+|+++|.|+   |.+|.++|..|++.|.+|.++.|.+
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~   42 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   42 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5788999997   6999999999999999999998865

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=88.13  E-value=0.38  Score=45.15  Aligned_cols=34  Identities=21%  Similarity=0.188  Sum_probs=30.9

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..++.|||+|.+|.-+|..|++.|.+|+++.|.+
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999999999999999999999999998753

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=88.12  E-value=0.22  Score=49.72  Aligned_cols=53  Identities=15%  Similarity=0.177  Sum_probs=37.7

Q ss_pred             cCcEEEecccc------cCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018416          152 KGGIKVTGRLQ------SSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       152 ~g~I~vd~~l~------ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  207 (356)
                      .|+|.||+++|      +.+|++||+|+++...   +|..+.- .....+.-.|++|+++++.
T Consensus       502 ~GGl~vd~~~~vl~~~g~~I~GLyAaGe~~~g~---~g~~~~~g~sl~~~~v~Gr~Ag~~aa~  561 (566)
T 1qo8_A          502 MGGVAINTTASVLDLQSKPIDGLFAAGEVTGGV---HGYNRLGGNAIADTVVFGRIAGDNAAK  561 (566)
T ss_dssp             CCEECBCTTCEEEBTTSCEEEEEEECSTTBCSS---STTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cccEEECCCCeEECCCCCEeCCEEecccccCCC---CCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence            58899999998      6799999999998643   2322211 1235677788988888753

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=88.12  E-value=0.38  Score=47.84  Aligned_cols=34  Identities=29%  Similarity=0.438  Sum_probs=31.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHC-CCcEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~-G~~Vtlv~~~~~   73 (356)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++.
T Consensus        14 ~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~   48 (546)
T 2jbv_A           14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPD   48 (546)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCc
Confidence            3699999999999999999998 899999999854

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=88.11  E-value=0.54  Score=42.85  Aligned_cols=36  Identities=22%  Similarity=0.122  Sum_probs=31.1

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      +.++|+|.|| |++|..++..|.+.|.+|+++.|.+.
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   49 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   49 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            5689999985 99999999999999999999988754

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=88.08  E-value=0.48  Score=43.25  Aligned_cols=35  Identities=29%  Similarity=0.406  Sum_probs=31.2

Q ss_pred             CCCCcEEEECCch-HHHHHHHHHHHCCCcEEEEeeC
Q 018416           37 CSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        37 ~~~~~vvVvGgG~-iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ..+++++|||.|. +|.-+|..|.+.|..||++++.
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            3789999999995 7999999999999999999743

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=88.04  E-value=1.9  Score=37.91  Aligned_cols=34  Identities=24%  Similarity=0.193  Sum_probs=30.2

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .+|+++|.| +|.+|.++|..|++.|.+|.++.|.
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   42 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN   42 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            568889988 5799999999999999999998765

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=88.03  E-value=1.2  Score=38.81  Aligned_cols=52  Identities=29%  Similarity=0.279  Sum_probs=38.2

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~   97 (356)
                      .+|+++|.| +|.+|.++|..|++.|.+|.++.+.+        ++-.+.+.+.+++.|.+
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~--------~~~~~~~~~~~~~~~~~   55 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGS--------KEKAEAVVEEIKAKGVD   55 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCC--------HHHHHHHHHHHHhcCCc
Confidence            357788887 58999999999999999999887643        23344555666666543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=87.99  E-value=1.7  Score=38.00  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=30.1

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .+|+++|.| +|.+|.++|..|++.|.+|.++.|.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~   40 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARR   40 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            468889988 5799999999999999999998764

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=87.99  E-value=0.64  Score=40.85  Aligned_cols=36  Identities=19%  Similarity=0.180  Sum_probs=31.4

Q ss_pred             CCCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..+|+++|.| +|.+|.++|..|++.|.+|.++.|.+
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   53 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   53 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3678899998 48999999999999999999998753

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=87.98  E-value=0.61  Score=42.84  Aligned_cols=36  Identities=19%  Similarity=0.185  Sum_probs=32.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .++++.|||.|.+|-.+|..|...|.+|+.+.+.+.
T Consensus       143 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~  178 (311)
T 2cuk_A          143 QGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPK  178 (311)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            578899999999999999999999999999987654

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=87.97  E-value=0.51  Score=40.81  Aligned_cols=37  Identities=14%  Similarity=0.230  Sum_probs=32.9

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCC--cEEEEeeCCcc
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKI--NVTMVFPEAHC   74 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~--~Vtlv~~~~~~   74 (356)
                      .+++++|.| +|.+|..++..|.+.|.  +|+++.|.+.-
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~   56 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   56 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCC
Confidence            468999999 59999999999999999  99999987653

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=87.97  E-value=0.55  Score=44.20  Aligned_cols=35  Identities=17%  Similarity=0.096  Sum_probs=31.4

Q ss_pred             cCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEee
Q 018416           36 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP   70 (356)
Q Consensus        36 ~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~   70 (356)
                      +..+++++|+|.|.+|..+|..|.+.|.+|++.++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~  204 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDV  204 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcC
Confidence            35789999999999999999999999999987653

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=87.97  E-value=0.61  Score=40.63  Aligned_cols=36  Identities=17%  Similarity=0.271  Sum_probs=31.8

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .+|+++|.| +|.+|.++|..|++.|.+|.++.|.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (241)
T 1dhr_A            6 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   42 (241)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            568899998 589999999999999999999988754

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=87.93  E-value=0.49  Score=42.36  Aligned_cols=33  Identities=24%  Similarity=0.265  Sum_probs=29.4

Q ss_pred             cEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           41 NAVVIGG-GYIGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        41 ~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      +++|.|+ |++|-.++..|. .|.+|+.+.|.+..
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~   35 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKE   35 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSS
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEecccccc
Confidence            6899996 999999999999 89999999987643

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=87.87  E-value=1.1  Score=39.37  Aligned_cols=50  Identities=18%  Similarity=0.145  Sum_probs=37.3

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV   96 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV   96 (356)
                      .+|.++|.| +|.+|.++|..|++.|.+|.++.|.+         +-.+.+.+.+++.|.
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~---------~~~~~~~~~~~~~~~   61 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKS---------EGAEAVAAAIRQAGG   61 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSH---------HHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH---------HHHHHHHHHHHhcCC
Confidence            577888887 58999999999999999999987643         233444555665553

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=87.85  E-value=0.5  Score=43.13  Aligned_cols=34  Identities=21%  Similarity=0.174  Sum_probs=31.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .++.|||.|.+|..+|..|.+.|.+|+++++.+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            6899999999999999999999999999987653

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=87.83  E-value=0.45  Score=40.63  Aligned_cols=36  Identities=14%  Similarity=0.213  Sum_probs=31.8

Q ss_pred             cEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           41 NAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        41 ~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      +++|.| +|++|..++..|.+.|.+|+++.|.+.-..
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~   38 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVP   38 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchh
Confidence            689998 799999999999999999999999875443

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=87.82  E-value=0.62  Score=42.21  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=31.1

Q ss_pred             CCCCcEEEECCch-HHHHHHHHHHHCCCcEEEEeeC
Q 018416           37 CSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        37 ~~~~~vvVvGgG~-iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ..+++++|||.|. +|--+|..|.+.|..||++++.
T Consensus       158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~  193 (285)
T 3p2o_A          158 LEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK  193 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            4789999999655 7999999999999999999864

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=87.82  E-value=1.6  Score=38.72  Aligned_cols=52  Identities=17%  Similarity=0.119  Sum_probs=40.4

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEE
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF   98 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v   98 (356)
                      ++|.++|-|+ +-||.++|..|++.|.+|.++.+.         ++-.+.+.+.+++.|.++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~---------~~~~~~~~~~i~~~g~~~   58 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELL---------EDRLNQIVQELRGMGKEV   58 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence            6788888874 579999999999999999998763         344556667777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	356
d1nhpa2	123	c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus	1e-22
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	1e-21
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	6e-21
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	4e-20
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	1e-18
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	3e-18
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	7e-16
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	7e-14
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	7e-14
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	9e-12
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	1e-11
d1mo9a2	121	c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co	1e-10
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	4e-10
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	5e-10
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	8e-10
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	4e-09
d1djqa2	156	c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,	6e-09
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	7e-09
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	1e-08
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	2e-08
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	2e-08
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	2e-08
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	7e-08
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	3e-07
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	6e-07
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	1e-06
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	2e-06
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	7e-06
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	2e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	5e-05
d1dxla2	123	c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase	5e-05
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	6e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	2e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-04
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	7e-04
d1d7ya3	97	d.87.1.1 (A:309-405) NADH-dependent ferredoxin red	7e-04
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	7e-04
d1q1ra3	103	d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseu	0.001
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.001
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	0.003
d1gtea3	153	c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas	0.003
d1kyqa1	150	c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferr	0.003

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 89.5 bits (221), Expect = 1e-22
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 12  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
           G D +N+  +R    A +L          N VVIG GYIG+E A +       VT++   
Sbjct: 3   GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL 62

Query: 72  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
              +      +      E  ++  +    G  +     + +G+V  V + D N    D+V
Sbjct: 63  DRPLGVYLDKEFTDVLTEEMEANNITIATGETVER--YEGDGRVQKV-VTDKNAYDADLV 119

Query: 132 VVGI 135
           VV +
Sbjct: 120 VVAV 123

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.1 bits (215), Expect = 1e-21
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 8/126 (6%)

Query: 16  ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN----VTMVFPE 71
                 R + D   L  + +     +  +IGGG++G E A +L          V  +FPE
Sbjct: 16  SRTTLFRKIGDFRSLEKISRE--VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPE 73

Query: 72  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131
              M ++    ++++  E  + +GVK +   ++ S  V      + + L+DG ++ TD +
Sbjct: 74  KGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGKLLIKLKDGRKVETDHI 131

Query: 132 VVGIGI 137
           V  +G+
Sbjct: 132 VAAVGL 137

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 84.8 bits (209), Expect = 6e-21
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 9/127 (7%)

Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           L G+    V  LR L DA R+   ++       +++GGG IG+E AA+     ++V++V 
Sbjct: 4   LQGAT-MPVHTLRTLEDARRIQAGLRP--QSRLLIVGGGVIGLELAATARTAGVHVSLVE 60

Query: 70  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 129
            +   M+R     +A +   Y+ ++GV       ++            V L DG R+  D
Sbjct: 61  TQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAAD 114

Query: 130 MVVVGIG 136
           MVVVGIG
Sbjct: 115 MVVVGIG 121

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 83.0 bits (204), Expect = 4e-20
 Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 3/124 (2%)

Query: 14  DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 73
            A N  YLR L DA  +   + +      VVIGGGYIG+E AA+ +   ++VT++   A 
Sbjct: 12  KANNFRYLRTLEDAECIRRQLIA--DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69

Query: 74  CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLRDGNRLPTDMVV 132
            + R+  P ++++YE  ++  GV    GT +  F++     KV AV   DG RLP D+V+
Sbjct: 70  VLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVI 129

Query: 133 VGIG 136
            GIG
Sbjct: 130 AGIG 133

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 80.9 bits (198), Expect = 1e-18
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 11/177 (6%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
           VV+G G   +   A L        +             P ++  +  +  ++ ++     
Sbjct: 7   VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKR 66

Query: 103 ------VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKG--- 153
                 +L       + +   V L DG  LP   +V+  G  P   L    L    G   
Sbjct: 67  APEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLAC 126

Query: 154 --GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 208
             GI V    +++   VYA+GDV      L G   R+E   +A+         +++P
Sbjct: 127 DDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDP 183

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 79.4 bits (194), Expect = 3e-18
 Identities = 36/180 (20%), Positives = 72/180 (40%), Gaps = 15/180 (8%)

Query: 41  NAVVIGGGYIGMECAASLVINKINVTMV--------------FPEAHCMARLFTPKIASY 86
           N V++G G  G+E A  L  +     +                 +A+   +     +   
Sbjct: 5   NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLR 64

Query: 87  YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 146
             + Y ++ ++ + GT +++ + D   +V+  + R  +     +   G  + PN  L   
Sbjct: 65  TPDAYAAQNIQLLGGTQVTAINRDRQ-QVILSDGRALDYDRLVLATGGRPLIPNCELASA 123

Query: 147 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206
                  GI +   +Q+S+  + AVGD A F  +L     R+E V +A + A+   A + 
Sbjct: 124 AGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILC 183

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 70.9 bits (173), Expect = 7e-16
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 11/123 (8%)

Query: 15  AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74
            E +  LR + DA+R+   +++   G A++IGGG+IG+E A +L     +V ++   A  
Sbjct: 10  KEYLLTLRTIFDADRIKESIEN--SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF 67

Query: 75  MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 134
           +      ++++  ++  +  GVKF   + L   + +         L +   +   + +  
Sbjct: 68  LG--LDEELSNMIKDMLEETGVKFFLNSELLEANEEG-------VLTNSGFIEGKVKICA 118

Query: 135 IGI 137
           IGI
Sbjct: 119 IGI 121

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 65.2 bits (158), Expect = 7e-14
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 20  YLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF 79
           Y  D      L  + +        V+G GYIG+E    +        +       +   F
Sbjct: 7   YGIDSDGFFALPALPER-----VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-F 60

Query: 80  TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 136
            P I+    E   ++G +     +  +   +++G +  + L DG     D ++  IG
Sbjct: 61  DPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIG 116

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 67.6 bits (163), Expect = 7e-14
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 24/193 (12%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP--------------KIASYYE 88
           +V+G  + G E    L+    +  + + E        +                +     
Sbjct: 4   IVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTG 63

Query: 89  EYYKSKGVKFVKGTVLSSFDVDSNGKV-VAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ 147
           E  +S+GV     T +++     +      +   +      D +++  G  P        
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRP 123

Query: 148 LTL---------EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA 198
            T            G IK    +++S   V+AVGD              +    +ARK  
Sbjct: 124 NTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQG 183

Query: 199 KHAVAAIMEPDKT 211
           + AV  + EP K 
Sbjct: 184 RFAVKNLEEPVKP 196

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 59.4 bits (143), Expect = 9e-12
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
            ++G GYI +E    +    I+  +       + + F   + +  E   K   +  V   
Sbjct: 26  GIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNINIVTFA 84

Query: 103 VLSSFDVDSNGKVVAVNLRDGNRL-PTDMVVVGI 135
            +      S+  +  ++L DG      D V+  +
Sbjct: 85  DVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCV 117

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 99
           G  +V+G  Y+ +ECA  L    ++VT++          F   +A+   E+ +  G+KF+
Sbjct: 21  GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--FDQDMANKIGEHMEEHGIKFI 78

Query: 100 KGTVLSSFDVDSNGK--VVAVNLRDGN-----RLPTDMVVVGIG 136
           +  V +  +    G    + V  +  N         + V++ +G
Sbjct: 79  RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 56.5 bits (135), Expect = 1e-10
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 10/128 (7%)

Query: 12  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71
           G +A+ V     L +       +    G   VV+GG    +E             M+   
Sbjct: 1   GVNAKGVFDHATLVEE------LDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT 54

Query: 72  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV---NLRDGNRLPT 128
                       A   +   +   ++ + G+ ++  + D+NG+V AV         R+ T
Sbjct: 55  EPLKLIKDNETRAYVLDRMKEQG-MEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIET 113

Query: 129 DMVVVGIG 136
           D V +G+G
Sbjct: 114 DFVFLGLG 121

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 56.4 bits (135), Expect = 4e-10
 Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 21/159 (13%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK-- 100
           +++G G  G   A       +   ++           T ++ ++  +     G   ++  
Sbjct: 9   LILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERM 68

Query: 101 GTVLSSFDVD-SNGKVVAVNLRDG--------NRLPTDMVVVGIGIRP-----NTSLFEG 146
               + F+ +     +  V+L++              D +++  G        NT++FEG
Sbjct: 69  HEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEG 128

Query: 147 QLTLEKGGIKVTGRL-----QSSNSSVYAVGDVAAFPLK 180
           QL LE G IKV   +     Q+S   V+A GDV     +
Sbjct: 129 QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 167

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 54.4 bits (130), Expect = 5e-10
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 3/99 (3%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--MARLFTPKIASYYEEYYKSKGVK 97
             A+ +GGGYI +E A      K     V        + R F  ++     E  ++ G+ 
Sbjct: 19  KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGIN 78

Query: 98  FVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 136
                  +    +++G    V    G     D+V++ IG
Sbjct: 79  VRTHENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIG 116

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 53.6 bits (128), Expect = 8e-10
 Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 40  GNAVVIGGGYIGMECAASLVINKIN---VTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 96
              + +GGG+I +E A      K     VT+ +     +   F   +     +   + G+
Sbjct: 21  RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTANGI 79

Query: 97  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 135
           + +     +  +++++G    V    G ++  D+V++ I
Sbjct: 80  QILTKENPAKVELNADGSKS-VTFESGKKMDFDLVMMAI 117

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 4e-09
 Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 45/204 (22%)

Query: 43  VVIGGGYIGMECAASLVIN--KINVTMVFPEAH--------------------------- 73
           ++IGGG      A S+        V +V  +                             
Sbjct: 8   LLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFK 67

Query: 74  --------CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR 125
                      +  +  +++    + ++ GV  + G  +   DV  N       L DG++
Sbjct: 68  QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMV----KLNDGSQ 123

Query: 126 LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQS---SNSSVYAVGDVAAFPLKLL 182
           +  +  ++  G             LE        R+ +   + S+++  GD A F    L
Sbjct: 124 ITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKL 183

Query: 183 GETRRLEHVDSARKSAKHAVAAIM 206
           G  RR+EH D A  S + A   + 
Sbjct: 184 GR-RRVEHHDHAVVSGRLAGENMT 206

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 52.2 bits (124), Expect = 6e-09
 Identities = 21/152 (13%), Positives = 41/152 (26%), Gaps = 12/152 (7%)

Query: 10  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 69
           + G+DA     L            +        +     ++    A  L      VT+V 
Sbjct: 15  IPGADASLPDQL-TPEQVMDGKKKIGKRV--VILNADTYFMAPSLAEKLATAGHEVTIVS 71

Query: 70  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 129
                    FT +             V+ +     S  +         + + +     + 
Sbjct: 72  GVHLANYMHFTLEY-PNMMRRLHELHVEELGDHFCSRIEPGR------MEIYNIWGDGSK 124

Query: 130 MVVVGIGIRPNTSLFEGQLTLE-KGGIKVTGR 160
               G G+ P  +    +  +E    + VTGR
Sbjct: 125 RTYRGPGVSPRDANTSHR-WIEFDSLVLVTGR 155

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 51.0 bits (121), Expect = 7e-09
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 99
            + VV+GGGYIG+E   +       V++V      +    +   A    E  K  G+   
Sbjct: 22  QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTA-PVAESLKKLGIALH 80

Query: 100 KGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIG 136
            G  +  ++   NG ++A + + G  RL  D V+V +G
Sbjct: 81  LGHSVEGYE---NGCLLANDGKGGQLRLEADRVLVAVG 115

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 28/169 (16%), Positives = 49/169 (28%), Gaps = 12/169 (7%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FTPKIASYYEEYYKSKGVK 97
           V++G G  G E A  L      VT++  E            +          +  S    
Sbjct: 4   VIVGNGPGGFELAKQLS-QTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWY 62

Query: 98  FVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 157
             +G  +   +           +           +V     PN  L          GI +
Sbjct: 63  RKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGILI 122

Query: 158 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206
               ++S   VYA+GD A +   + G         +A + A+     + 
Sbjct: 123 DDNFRTSAKDVYAIGDCAEYSGIIAG------TAKAAMEQARVLADILK 165

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 52.2 bits (124), Expect = 2e-08
 Identities = 44/233 (18%), Positives = 67/233 (28%), Gaps = 74/233 (31%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMV---------------------------------- 68
           +V+G G  G   A         VT+V                                  
Sbjct: 7   LVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSE 66

Query: 69  ------------FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT----VLSSFDVDSN 112
                       F +          K+    E   K   V+ VKG       ++  V + 
Sbjct: 67  EMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNG 126

Query: 113 GKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR--------LQSS 164
                   ++         +  +G RPNT      L LE+ GIK+T R         ++S
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELVGRRPNTDE----LGLEQIGIKMTNRGLIEVDQQCRTS 182

Query: 165 NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYL 217
             +++A+GD+   P         L H   A    K A  AI         DY+
Sbjct: 183 VPNIFAIGDIVPGPA--------LAHK--ASYEGKVAAEAIA--GHPSAVDYV 223

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 99
           G  ++IGGG IG+E           + +V      M +     +   +++  + +    +
Sbjct: 27  GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-QGADRDLVKVWQKQNEYRFDNIM 85

Query: 100 KGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIG 136
             T   + +   +G  V     +  +     D V+V  G
Sbjct: 86  VNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 99
           G +V++G GYI +E A  L       +++      +   F   I++   E  ++ GV+ +
Sbjct: 23  GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVL 81

Query: 100 KGTVLSSFDVDSNGKVVAVNLRDGNRLPT-------DMVVVGIG 136
           K + +       +G  V++      RLP        D ++  IG
Sbjct: 82  KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 48.2 bits (114), Expect = 7e-08
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 41  NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 100
              VIG G IG+E   S+         V             ++A   ++    +G+K + 
Sbjct: 24  KLGVIGAGVIGLEL-GSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILL 82

Query: 101 GTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIG 136
           G  ++  +V +    V     +G +    D ++V +G
Sbjct: 83  GARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 48.8 bits (115), Expect = 3e-07
 Identities = 36/221 (16%), Positives = 57/221 (25%), Gaps = 65/221 (29%)

Query: 41  NAVVIGGGYIGMECAASLVINKINVTMVFPEAH---------CMARLFTPKIASYYEEYY 91
           +A+ IGGG  G   +A L        +V              C+        A+      
Sbjct: 44  DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLAR 103

Query: 92  KSKGVKFVKGTVLSSFDVDSNGKVVAVNL------------------------------- 120
              G  +          +     +                                    
Sbjct: 104 TFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNH 163

Query: 121 ---RDGNRLPTDMVVVGIGIRPNT------------SLFEGQLTLEKGGIKVTGRLQSSN 165
                G       +++ +G  P T            +   G     KG + V   LQ+S 
Sbjct: 164 TVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQTSV 223

Query: 166 SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206
            +VYAVGD+   P+              ARKS  +A   +M
Sbjct: 224 PNVYAVGDLIGGPM--------EMFK--ARKSGCYAARNVM 254

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (107), Expect = 6e-07
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 40  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 99
               +IGGG IG+E  +        VT+V  +    A     ++A   +++ K +G+ F 
Sbjct: 24  KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFK 82

Query: 100 KGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVV 133
             T + S   + +  VV + + D        L  ++++V
Sbjct: 83  LSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLV 121

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 30/186 (16%), Positives = 52/186 (27%), Gaps = 24/186 (12%)

Query: 38  SGGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG 95
           +G   VV+GGG  G   A  + +    I VT++ P         + ++     +    K 
Sbjct: 1   AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKH 60

Query: 96  VKFVKG----TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL-------- 143
                      V+       +     V    G     D  VV  GI              
Sbjct: 61  GYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKI 120

Query: 144 ---FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH 200
                         + +     S +  ++ +GD +             +   SA    K 
Sbjct: 121 AQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIAN-------PMPKSGYSANSQGKV 173

Query: 201 AVAAIM 206
           A AA++
Sbjct: 174 AAAAVV 179

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 23/161 (14%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMV----------------FPEAHCMARLFTPKIASY 86
            ++G G      A      ++   +                   +           +   
Sbjct: 9   CIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVE 68

Query: 87  YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR-----PNT 141
             + ++ +  +F       +               D   +  D V++ IG       P T
Sbjct: 69  LTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPAT 128

Query: 142 SLFEGQLTLEKGGIKVT--GRLQSSNSSVYAVGDVAAFPLK 180
              +G + L+  G  VT  G  Q+S   V+A GDV     +
Sbjct: 129 KFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR 169

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.5 bits (99), Expect = 7e-06
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 41  NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 100
           + VVIGGGYIG+E   +       VT++      ++  F  ++A+  ++  K KGV+ V 
Sbjct: 24  SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVT 82

Query: 101 GTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVV 133
             +    +   +G  V        + +  D V+V
Sbjct: 83  NALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 16/156 (10%)

Query: 41  NAVVIGGGYIGMECAASLVINKINVTMV----------------FPEAHCMARLFTPKIA 84
           + +++G G  G   A       I   ++                +               
Sbjct: 3   DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGAL 62

Query: 85  SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF 144
             + + Y    +     + L    V+     +        +  + +V  G  +     L 
Sbjct: 63  KVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLE 122

Query: 145 EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLK 180
                   G I +  + +++   V+A GD    P K
Sbjct: 123 GAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 158

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 37/225 (16%), Positives = 57/225 (25%), Gaps = 62/225 (27%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMV--------FPEAHCMARLFTPKIASYYEEYYKSK 94
           +VIGGG  G+  A           +V             C+ +      A + E  +   
Sbjct: 7   LVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHA 66

Query: 95  GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL---------------------------- 126
              F       ++ V    +   V+  +                                
Sbjct: 67  DYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVS 126

Query: 127 ------------PTDMVVVGIGIRPNTSLFE----GQLTLEKGGIKVTGRLQSSNSSVYA 170
                          M        PNT        G  T +KG I V     ++   +YA
Sbjct: 127 GKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYA 186

Query: 171 VGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFD 215
           VGDV    L        L  V  A  + +     + E  +  K D
Sbjct: 187 VGDVCGKAL--------LTPV--AIAAGRKLAHRLFEYKEDSKLD 221

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 41  NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 100
             VVIG GYIG+E  +        VT+V   +  +      +I   ++   + +G+KF  
Sbjct: 27  KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-PTMDAEIRKQFQRSLEKQGMKFKL 85

Query: 101 GTVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVV 133
            T +   D   +G  + V    G     +  D+V+V
Sbjct: 86  KTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLV 121

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 29/162 (17%), Positives = 45/162 (27%), Gaps = 47/162 (29%)

Query: 12  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV------------ 59
           G D   V    D+      V       G    +IG G IG + A  L             
Sbjct: 9   GIDHPKVLSYLDVLRDKAPV-------GNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAG 61

Query: 60  -------------------------INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK 94
                                     +   + M+  +A    +         +     S+
Sbjct: 62  FCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSR 121

Query: 95  GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 136
           GVK + G       +D +G  V +N  +   L  D VV+  G
Sbjct: 122 GVKMIPGVSYQK--IDDDGLHVVIN-GETQVLAVDNVVICAG 160

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 18/178 (10%)

Query: 31  VNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY 90
           V +  +    + V       G    A +V N   VT       CM             E 
Sbjct: 147 VKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDP--------NVIEL 198

Query: 91  YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQL-T 149
              K       +      + + G                  +V I         +G    
Sbjct: 199 AGYKNDGTRDLSQKHGVILSTTGH------DGPFGAFCAKRIVDIDQNQKLGGMKGLDMN 252

Query: 150 LEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207
             +  + +     +   ++Y  G   A      G  R      +   S  HA   I++
Sbjct: 253 HAEHDVVIHSGAYAGVDNMYFAGMEVAEL---DGLNRMGPTFGAMALSGVHAAEQILK 307

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 28/134 (20%), Positives = 43/134 (32%), Gaps = 8/134 (5%)

Query: 52  MECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS 111
               A+  +   NV +               +    E  +K   V +VKG        + 
Sbjct: 64  KHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEI 123

Query: 112 NGKVVAVNLRDGNRLPTDMVVVG---IGIRPNTSLFE----GQLTLEKGGIKVTGRLQSS 164
           +   +             ++  G    G  P TS       G  T + G I V  R  ++
Sbjct: 124 SVDTIEGENTVVKGKHI-IIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTN 182

Query: 165 NSSVYAVGDVAAFP 178
            S VYA+GDV   P
Sbjct: 183 VSGVYAIGDVIPGP 196

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 15/191 (7%)

Query: 43  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 102
            ++G G   + CA+ L     +   +F +   +  L T +I  +   Y        +   
Sbjct: 8   ALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKD 67

Query: 103 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG--- 159
           +        +     + L            +GIG+       + +  L            
Sbjct: 68  LGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPE 127

Query: 160 ----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME--PDKTDK 213
                +Q+S   V+A GD+             +E V+  ++++ +    I          
Sbjct: 128 VDPETMQTSEPWVFAGGDIVG------MANTTVESVNDGKQASWYIHKYIQAQYGASVSA 181

Query: 214 FDYLPFFYSRV 224
              LP FY+ V
Sbjct: 182 KPELPLFYTPV 192

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 97

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 214 FDYLPFFYSRVFTLSWQFYGDNVGE---VVHYGNFSGTTFGAYWVNKGRLVG 262
           +  LP+++S    L  Q  G   G+   V    +     F    + KGR+VG
Sbjct: 5   YAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVG 56

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 13/108 (12%)

Query: 85  SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPNTSL 143
           SY   +  ++G+ F +G      +     +  A         L T+ +++  G  P    
Sbjct: 108 SYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLG 167

Query: 144 FEGQ----LTLEKGGIKVTGR--------LQSSNSSVYAVGDVAAFPL 179
            E      L LEK G++V            +++  ++YA+GDV    +
Sbjct: 168 IEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM 215

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 103

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 8/52 (15%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 213 KFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVG 262
           + +  P+F+S  + +  +  G + G   ++  G+ +   F  +++   R++ 
Sbjct: 3   RDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLA 54

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 144 FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVA 203
               + ++ GG++V    +++ S++YA+GDV             L  V  A   A   V 
Sbjct: 179 QNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRV--------MLTPV--AINEAAALVD 228

Query: 204 AIM--EPDKT 211
            +    P KT
Sbjct: 229 TVFGTTPRKT 238

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 146 GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 179
           G    ++G I+V  +++++   +YA+GD+   P+
Sbjct: 172 GVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 205

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 10/108 (9%)

Query: 39  GGNAVVIGGGYIGMECAASLV-INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 97
            G  +V+G G    +CA S +      V +VF +     R    ++    EE  +     
Sbjct: 45  RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFL 104

Query: 98  FVKGTVLSSFDVDSNGKVVAVNLRDGNR---------LPTDMVVVGIG 136
             +  ++    + +   V       G           L  D+V+   G
Sbjct: 105 SPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFG 152

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGV 96
               ++IGGG +G+     L+     +T+V P+ H  +   F   I +  +  Y+    
Sbjct: 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAK 71

Query: 97 KFV 99
          +F+
Sbjct: 72 RFI 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.94
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.94
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.93
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.92
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.92
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.91
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.9
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.9
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.89
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.86
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.86
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.85
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.85
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.83
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.83
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.83
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.83
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.82
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.82
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.81
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.81
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.8
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.8
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.79
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.78
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.76
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.76
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.76
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.75
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.75
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.74
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.74
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.72
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.71
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.71
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.66
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.62
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.6
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.56
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.53
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.53
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.5
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.4
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.37
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.3
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.27
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.26
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.23
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.23
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.21
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.2
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.18
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.13
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.08
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	99.06
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.06
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.04
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	99.03
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.9
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.88
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.87
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.86
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.81
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.8
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.78
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.72
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.72
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.69
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.64
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.62
d1d7ya3	97	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.6
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.58
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.58
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.57
d1q1ra3	103	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.56
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	98.55
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.54
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	98.52
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	98.52
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.52
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.52
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.51
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.5
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.49
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.48
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	98.45
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.43
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.43
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.39
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	98.35
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.32
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.31
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.27
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.27
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.16
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.15
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	98.1
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.99
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.94
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.78
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.69
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.51
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.51
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.48
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.19
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	97.14
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.01
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	96.99
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.89
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.64
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.64
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.52
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.52
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.34
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.34
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.31
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	96.25
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	96.13
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	96.05
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.03
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.75
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	95.65
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.5
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.26
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.19
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.13
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	94.72
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.68
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.42
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.99
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	93.6
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.57
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	93.53
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.35
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.26
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.2
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	93.19
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.13
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.1
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.07
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.95
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.88
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.87
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	92.77
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.68
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	92.63
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.54
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.45
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.1
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	91.98
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.95
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	91.89
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	91.88
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	91.88
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.78
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.74
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	91.66
d1m6ia3	131	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.6
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	91.55
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.51
d1xhca3	62	NADH oxidase /nitrite reductase {Pyrococcus furios	91.41
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.36
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	91.21
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.21
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.14
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	91.09
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.0
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	90.85
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.78
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.66
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	90.31
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	90.21
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	90.14
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.12
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	90.06
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	89.87
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	89.79
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.7
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	89.6
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	89.54
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.41
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	89.35
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	89.33
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	89.12
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	89.1
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	89.07
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	89.07
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	88.88
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	88.81
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	88.79
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.71
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	88.67
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	88.57
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	88.55
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	88.52
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	88.41
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.38
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	88.32
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	88.31
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.26
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	88.25
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	88.22
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	88.13
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	88.13
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	88.06
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	88.06
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.02
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	88.01
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	87.78
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	87.59
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	87.57
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	87.44
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.42
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	87.27
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.02
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	86.9
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	86.88
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	86.86
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.85
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	86.77
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	86.49
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	86.44
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	86.43
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	86.37
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	86.22
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	86.08
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	85.98
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	85.92
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	85.87
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	85.83
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	85.59
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	85.41
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	85.27
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	85.23
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	85.04
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.97
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	84.96
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	84.95
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	84.86
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	84.82
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	84.72
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	84.63
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	84.61
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	84.32
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	84.24
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.2
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	84.12
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	84.08
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	83.98
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	83.77
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	83.46
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	83.38
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	83.27
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	83.21
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	82.98
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	82.95
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	82.83
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	82.72
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	82.69
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	82.63
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	82.24
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	81.97
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	81.7
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	81.6
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	81.52
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	81.32
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	81.28
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	81.18
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	81.02
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	81.01
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	81.01
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	80.84
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	80.75
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	80.58
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	80.53
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	80.47
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	80.45
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	80.32
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	80.09

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.94  E-value=1.1e-26  Score=199.61  Aligned_cols=163  Identities=23%  Similarity=0.335  Sum_probs=131.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHH----------HHHHhCCCEEEeCCeeeEEEE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE----------EYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~----------~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      .+|+|||||++|+|+|..|+++|.+|+++.+.++.++.+..+.+...+.          ..+...+|+++++++++++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~   83 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   83 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence            5699999999999999999999999888887777665422233222222          123456999999999999874


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc------cccccCcEEEecccccCCCCEEEEccccccCccccC
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ------LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG  183 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~------l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g  183 (356)
                        +..  .+.+++|+++++|.+++++|.+|++.+.+..      +. .+++|.||+++||+.|+|||+|||+..+++..|
T Consensus        84 --~~~--~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~-~~~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g  158 (183)
T d1d7ya1          84 --QAH--TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLA-CDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSG  158 (183)
T ss_dssp             --TTT--EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCC-BSSSEECCTTCBCSSTTEEECGGGEEEECTTTC
T ss_pred             --ccc--eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEe-eCCcEEeccceeccccccchhhhhhccceeeCC
Confidence              332  4678999999999999999999987544322      22 356799999999999999999999999988888


Q ss_pred             cccccccHHHHHHHHHHHHHHHcC
Q 018416          184 ETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       184 ~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      ...+++++..|.+||+.||+||+.
T Consensus       159 ~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         159 RFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             SEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             ceechhHHHHHHHHHHHHHHHHcC
Confidence            888889999999999999999974

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.94  E-value=4.6e-26  Score=182.99  Aligned_cols=120  Identities=33%  Similarity=0.505  Sum_probs=112.0

Q ss_pred             CCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHH
Q 018416            8 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY   87 (356)
Q Consensus         8 ~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~   87 (356)
                      |++||.+.+ |+++||++|+.++++.+.  ++++++|||||++|+|+|..|+++|++||+++++++++++.+|+++++.+
T Consensus         2 P~ipG~~~~-v~~lrtl~Da~~l~~~~~--~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~   78 (121)
T d1d7ya2           2 PTLQGATMP-VHTLRTLEDARRIQAGLR--PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFV   78 (121)
T ss_dssp             GGGTTCSSC-EEECCSHHHHHHHHHHCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHH
T ss_pred             ccCCCCCCC-EEEeCCHHHHHHHHHhhh--cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHH
Confidence            689999865 999999999999999987  57999999999999999999999999999999999999877999999999


Q ss_pred             HHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecC
Q 018416           88 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  136 (356)
Q Consensus        88 ~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G  136 (356)
                      ++.|+++||+++++++++++..   +   .+.++||++++||+|++|+|
T Consensus        79 ~~~l~~~GV~i~~~~~v~~~~~---~---~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          79 ARYHAAQGVDLRFERSVTGSVD---G---VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHTTTCEEEESCCEEEEET---T---EEEETTSCEEECSEEEECSC
T ss_pred             HHHHHHCCcEEEeCCEEEEEeC---C---EEEECCCCEEECCEEEEeeC
Confidence            9999999999999999999863   3   46789999999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.93  E-value=1.3e-25  Score=180.95  Aligned_cols=123  Identities=24%  Similarity=0.388  Sum_probs=113.7

Q ss_pred             CCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHH
Q 018416           10 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEE   89 (356)
Q Consensus        10 ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~   89 (356)
                      |||.+++|||++++++|+.++++.+....+++++|||||++|+|+|..|+++|++||++++.++++++.+|+++++.+++
T Consensus         1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~   80 (123)
T d1nhpa2           1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE   80 (123)
T ss_dssp             STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred             CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence            79999999999999999999999998777899999999999999999999999999999999999998799999999999


Q ss_pred             HHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEec
Q 018416           90 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  135 (356)
Q Consensus        90 ~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  135 (356)
                      .|+++||++++++.++++++  ++.+..+ +.||++++||+|++|+
T Consensus        81 ~l~~~gv~~~~~~~v~~i~~--~~~~~~v-~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          81 EMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHTTTEEEEESCCEEEEEC--SSBCCEE-EESSCEEECSEEEECS
T ss_pred             HhhcCCeEEEeCceEEEEEc--CCCEEEE-EeCCCEEECCEEEEEC
Confidence            99999999999999999985  4444434 6789999999999985

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=3.2e-25  Score=189.69  Aligned_cols=167  Identities=24%  Similarity=0.332  Sum_probs=133.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC--------------HHHHHHHHHHHHhCCCEEEeCCe
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT--------------PKIASYYEEYYKSKGVKFVKGTV  103 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d--------------~~~~~~~~~~l~~~GV~v~~~~~  103 (356)
                      ..++|||||||++|+|+|..|+++|.+|+++++.++.......              ..........+...++.+..+..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            4689999999999999999999999999988777654322111              11122224456677888888888


Q ss_pred             eeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC---CchhhhcccccccCcEEEecccccCCCCEEEEccccccCcc
Q 018416          104 LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP---NTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLK  180 (356)
Q Consensus       104 v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p---~~~l~~~~l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~  180 (356)
                      +..+.. +..   .+.+.++.++++|.+++++|.+|   +..+++......+++|.||++||||+|+|||+|||+..+..
T Consensus        82 ~~~~~~-~~~---~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~~ts~~~vya~GD~~~~~~~  157 (185)
T d1q1ra1          82 VTAINR-DRQ---QVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQ  157 (185)
T ss_dssp             EEEEET-TTT---EEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTSBCSSTTEEECGGGEEEEET
T ss_pred             eeeecc-ccc---EEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCccccchhhhhcchhhhccccc
Confidence            888764 222   46678899999999999999876   45565554333568899999999999999999999999998


Q ss_pred             ccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416          181 LLGETRRLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       181 ~~g~~~~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                      .++.+.++++++.|.+||+.||+||+|+
T Consensus       158 ~~~~~~~~~~a~~A~~~g~~aa~~i~G~  185 (185)
T d1q1ra1         158 LYDRWVRIESVPNALEQARKIAAILCGK  185 (185)
T ss_dssp             TTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred             cCCcccchhhHHHHHHHHHHHHHHccCC
Confidence            8888888899999999999999999884

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.92  E-value=4.3e-25  Score=191.97  Aligned_cols=166  Identities=22%  Similarity=0.318  Sum_probs=131.5

Q ss_pred             cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCccCCHHH--------------HHHHHHHHHhCCCEEEeCCee
Q 018416           41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARLFTPKI--------------ASYYEEYYKSKGVKFVKGTVL  104 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~~~d~~~--------------~~~~~~~l~~~GV~v~~~~~v  104 (356)
                      ||+|||||++|+|+|..|+++  +.+||++++.+.+..  .++.+              .....+.|+++||+++++++|
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V   79 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF--LSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI   79 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB--CGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccc--cccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeece
Confidence            699999999999999999997  457999998876521  22222              222356788999999999999


Q ss_pred             eEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCC--------CCchhhhccccc-ccCcEEEecccccCCCCEEEEcc
Q 018416          105 SSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIR--------PNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGD  173 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~--------p~~~l~~~~l~~-~~g~I~vd~~l~ts~~~VyAiGD  173 (356)
                      ++++. ++..+....+.+|+  ++++|.+++++|..        |++.+++..+.. ++|+|.||++|||+.|+|||+||
T Consensus        80 ~~i~~-~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~GD  158 (198)
T d1nhpa1          80 TAIQP-KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGD  158 (198)
T ss_dssp             EEEET-TTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGG
T ss_pred             eeEee-ccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccccccceEEecc
Confidence            99986 33433322345554  58899999999865        556666666655 78999999999999999999999


Q ss_pred             ccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          174 VAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      |+..+...++...+++++..|.+||+.||+||.+..
T Consensus       159 ~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~  194 (198)
T d1nhpa1         159 ATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV  194 (198)
T ss_dssp             GSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred             eeecccccCCCcccccHHHHHHHHHHHHHHhhCCCC
Confidence            999888777878888899999999999999997654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.91  E-value=3e-24  Score=181.08  Aligned_cols=152  Identities=22%  Similarity=0.340  Sum_probs=118.2

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHH-------------HHHHHHHhCCCEEEeCCeeeEE
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS-------------YYEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~-------------~~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      ||+|||||++|+|+|..|++ +.+||++++.+.+..  .++.+.+             ...+.+++.++++++++.++++
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   78 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY--SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI   78 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC--CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc--cccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccc
Confidence            79999999999999999975 779999998765321  1222222             2245677889999999999998


Q ss_pred             EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh-cccccccCcEEEecccccCCCCEEEEccccccCccccCccc
Q 018416          108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE-GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETR  186 (356)
Q Consensus       108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~-~~l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~  186 (356)
                      +.  +..   +.+.+++++++|.+++++|.+|+ .+.. .++... ++|.||++|||+.|+|||+|||+..+..+     
T Consensus        79 ~~--~~~---~~~~~~~~i~~D~li~a~G~~~~-~~~~~~gl~~~-~~i~v~~~~~t~~~~i~aiGD~~~~~~~~-----  146 (167)
T d1xhca1          79 DR--GRK---VVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII-----  146 (167)
T ss_dssp             ET--TTT---EEEESSCEEECSEEEECCCEECC-HHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC-----
T ss_pred             cc--ccc---cccccccccccceeEEEEEecCC-chhhhcCceeC-CceeeccccEecCCCeEEeeecccCCCeE-----
Confidence            63  332   34567788999999999999775 4444 345554 46999999999999999999999876542     


Q ss_pred             ccccHHHHHHHHHHHHHHHcCC
Q 018416          187 RLEHVDSARKSAKHAVAAIMEP  208 (356)
Q Consensus       187 ~~~~~~~A~~~g~~aa~~i~g~  208 (356)
                       ++.+..|++||+.+|+||+|+
T Consensus       147 -~~~~~~a~~~a~~~a~~i~Ge  167 (167)
T d1xhca1         147 -AGTAKAAMEQARVLADILKGE  167 (167)
T ss_dssp             -CCSHHHHHHHHHHHHHHHTTC
T ss_pred             -EChHHHHHHHHHHHHHHcCCC
Confidence             356888999999999999874

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=9e-24  Score=172.32  Aligned_cols=121  Identities=38%  Similarity=0.677  Sum_probs=112.5

Q ss_pred             CCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHh
Q 018416           14 DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS   93 (356)
Q Consensus        14 ~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~   93 (356)
                      +.++++++|+++|+.++++.+.  .+++++|||||++|+|+|..|+++|++||++++.++++++.+++++++.+++.+++
T Consensus        12 ~~~~v~~lr~~~d~~~l~~~~~--~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~   89 (133)
T d1q1ra2          12 KANNFRYLRTLEDAECIRRQLI--ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHRE   89 (133)
T ss_dssp             HSTTEEESSSHHHHHHHHHTCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHH
T ss_pred             ccCCeeEeCCHHHHHHHHHhhc--cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccc
Confidence            4679999999999999999886  57999999999999999999999999999999999999987899999999999999


Q ss_pred             CCCEEEeCCeeeEEEEcC-CCcEEEEEeCCCcEEecCeEEEecC
Q 018416           94 KGVKFVKGTVLSSFDVDS-NGKVVAVNLRDGNRLPTDMVVVGIG  136 (356)
Q Consensus        94 ~GV~v~~~~~v~~i~~~~-~g~v~~v~~~~g~~i~~D~vi~a~G  136 (356)
                      +||++++++++++++... ++.+..+.++||+++++|.||+|+|
T Consensus        90 ~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          90 AGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             cccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            999999999999998643 4567779999999999999999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.90  E-value=6.2e-24  Score=170.73  Aligned_cols=121  Identities=26%  Similarity=0.496  Sum_probs=110.3

Q ss_pred             CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416            4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   83 (356)
Q Consensus         4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~   83 (356)
                      +|+.|+|||.+  ++|+++++.|++++.+.+.  .+++++|||||++|+|+|..|+++|++||++++++++++  +|+++
T Consensus         1 R~r~p~ipG~e--~~~t~~~~~d~~~l~~~~~--~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d~~~   74 (122)
T d1xhca2           1 RAREPQIKGKE--YLLTLRTIFDADRIKESIE--NSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEEL   74 (122)
T ss_dssp             EECCCCSBTGG--GEECCCSHHHHHHHHHHHH--HHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHH
T ss_pred             CCCCcCCCCcc--ceEccCCHHHHHHHHHHhh--cCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CCHHH
Confidence            58899999974  7999999999999999987  479999999999999999999999999999999999886  89999


Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                      ++.+.+.|+++||++++++++++++.  ++    + +.+++.+++|+|++|+|.
T Consensus        75 ~~~~~~~l~~~GV~~~~~~~v~~~~~--~~----v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          75 SNMIKDMLEETGVKFFLNSELLEANE--EG----V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHHTTEEEECSCCEEEECS--SE----E-EETTEEEECSCEEEECCE
T ss_pred             HHHHHHHHHHCCcEEEeCCEEEEEeC--CE----E-EeCCCEEECCEEEEEEEe
Confidence            99999999999999999999999853  32    2 457889999999999995

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.1e-24  Score=189.09  Aligned_cols=164  Identities=25%  Similarity=0.391  Sum_probs=126.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCCcc------CCccC---------------------------CHH--
Q 018416           40 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHC------MARLF---------------------------TPK--   82 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~~~------l~~~~---------------------------d~~--   82 (356)
                      .++||||||++|+|+|..|+++|.  +|+++++.+.+      ++..+                           +++  
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY   84 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhh
Confidence            468999999999999999998876  59999875542      10000                           000  


Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc-hhhhc-cccc--ccCcEEEe
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT-SLFEG-QLTL--EKGGIKVT  158 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~-~l~~~-~l~~--~~g~I~vd  158 (356)
                      ........+++.||+++++++|++|+.+ +.   .|+++||++++||.+|+|+|..|+. .+... ++..  ..++|.||
T Consensus        85 ~~~~~~~~~~~~gI~~~~g~~V~~id~~-~~---~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd  160 (213)
T d1m6ia1          85 VSAQDLPHIENGGVAVLTGKKVVQLDVR-DN---MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVN  160 (213)
T ss_dssp             BCTTTTTTSTTCEEEEEETCCEEEEEGG-GT---EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECC
T ss_pred             hhhhhHHHHHHCCeEEEeCCEEEEeecc-Cc---eeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhh
Confidence            1111123456789999999999999752 32   5788999999999999999976544 55443 3544  45899999


Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      ++|||+ |+|||+|||+..++...|. .++++++.|+.||+.||+||+|..
T Consensus       161 ~~l~~~-~~VyA~GD~a~~~~~~~g~-~~i~~~~~A~~~gr~aa~ni~g~~  209 (213)
T d1m6ia1         161 AELQAR-SNIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGAA  209 (213)
T ss_dssp             TTCEEE-TTEEECGGGEEEEETTTEE-ECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             HhcCcC-CceEEeeeeeeeccccCCc-EEeeEhHHHHHHHHHHHHHhcCCC
Confidence            999998 9999999999998876665 467899999999999999999875

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-21  Score=160.43  Aligned_cols=118  Identities=26%  Similarity=0.519  Sum_probs=108.1

Q ss_pred             CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHH----CCCcEEEEeeCCccCCccCCHHHHHHHHHHH
Q 018416           16 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVI----NKINVTMVFPEAHCMARLFTPKIASYYEEYY   91 (356)
Q Consensus        16 ~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~----~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l   91 (356)
                      ++++.+|+++|+.++.+.++  .+++++|||||++|+|+|..|++    .|.+||++++.++++++.+|+++++.+.+.|
T Consensus        16 ~~~~~~r~~~d~~~l~~~~~--~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l   93 (137)
T d1m6ia2          16 SRTTLFRKIGDFRSLEKISR--EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKV   93 (137)
T ss_dssp             HTEEECCSHHHHHHHHHHHH--HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHH
T ss_pred             CcEEEEcCHHHHHHHHHHhh--cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHH
Confidence            57999999999999999987  57999999999999999999964    5999999999999999879999999999999


Q ss_pred             HhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416           92 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        92 ~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                      +++||++++++.|++++.+ ++. ..++++||++++||+||+|+|+
T Consensus        94 ~~~GV~~~~~~~V~~i~~~-~~~-~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          94 RREGVKVMPNAIVQSVGVS-SGK-LLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             HTTTCEEECSCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECCCE
T ss_pred             HhCCcEEEeCCEEEEEEec-CCE-EEEEECCCCEEECCEEEEeecC
Confidence            9999999999999999873 443 4689999999999999999994

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=8.4e-22  Score=156.69  Aligned_cols=116  Identities=19%  Similarity=0.283  Sum_probs=101.4

Q ss_pred             CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHH
Q 018416            9 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE   88 (356)
Q Consensus         9 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~   88 (356)
                      +|||.+  .+   .+.+++..++     ..|++++|||||++|+|+|..|+++|.+||++++++++++. +|+++++.+.
T Consensus         1 diPG~e--~~---~t~~~~~~l~-----~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-~d~~~~~~~~   69 (116)
T d1gesa2           1 DIPGVE--YG---IDSDGFFALP-----ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLV   69 (116)
T ss_dssp             CSTTGG--GS---BCHHHHHHCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHH
T ss_pred             CcCCcc--cc---CCHHHHhChh-----hCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-cchhhHHHHH
Confidence            478875  23   3556665542     25799999999999999999999999999999999999997 8999999999


Q ss_pred             HHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecC
Q 018416           89 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  136 (356)
Q Consensus        89 ~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G  136 (356)
                      +.|+++||++++++.++++..++++.+ .+++++|+++++|.||+|+|
T Consensus        70 ~~l~~~GV~~~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          70 EVMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHSCEEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSC
T ss_pred             HHHHHCCCEEEeCCEEEEEEEcCCcEE-EEEECCCCEEEcCEEEEecC
Confidence            999999999999999999988666654 58899999999999999998

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.85  E-value=4.6e-21  Score=153.33  Aligned_cols=118  Identities=25%  Similarity=0.386  Sum_probs=102.1

Q ss_pred             CCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHH
Q 018416           12 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY   91 (356)
Q Consensus        12 G~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l   91 (356)
                      |.+.++||      |+..+.+.+...++++++|||||++|+|+|..|+++|.+||++++++++++. +|+++++.+++.|
T Consensus         1 G~~~~gv~------~~~~~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~-~d~~~~~~~~~~l   73 (121)
T d1mo9a2           1 GVNAKGVF------DHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDRM   73 (121)
T ss_dssp             TTTSBTEE------EHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHHH
T ss_pred             CCCCCCEE------eHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc-cccchhhhhhhhh
Confidence            67788999      4445555565557899999999999999999999999999999999999986 9999999999999


Q ss_pred             HhCCCEEEeCCeeeEEEEcCCCcEEEEE---eCCCcEEecCeEEEecC
Q 018416           92 KSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGNRLPTDMVVVGIG  136 (356)
Q Consensus        92 ~~~GV~v~~~~~v~~i~~~~~g~v~~v~---~~~g~~i~~D~vi~a~G  136 (356)
                      +++||++++++++++++.++++.+..+.   ..+++++++|.||+|+|
T Consensus        74 ~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          74 KEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             hccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            9999999999999999987777654443   34457899999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.85  E-value=6e-21  Score=151.83  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=99.5

Q ss_pred             cCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHH
Q 018416            7 EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASY   86 (356)
Q Consensus         7 ~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~   86 (356)
                      +|+|||.+  ++++   .+|+.++      ..+++++|||||++|+|+|..|+++|++||++++++++++. +|+++++.
T Consensus         1 ~P~IpG~e--~~~t---s~~~~~l------~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~-~d~~~~~~   68 (117)
T d1onfa2           1 FPPVKGIE--NTIS---SDEFFNI------KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINV   68 (117)
T ss_dssp             CCSCTTGG--GCEE---HHHHTTC------CCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHHH
T ss_pred             CcccCCHh--HcCc---hhHHhcc------CCCCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc-ccHHHHHH
Confidence            47899975  4553   3343322      25899999999999999999999999999999999999986 89999999


Q ss_pred             HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEe-cCeEEEec
Q 018416           87 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP-TDMVVVGI  135 (356)
Q Consensus        87 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~-~D~vi~a~  135 (356)
                      +.+.|+++||++++++++++++..+++.+ .+++++|+.++ +|.|++|+
T Consensus        69 ~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          69 LENDMKKNNINIVTFADVVEIKKVSDKNL-SIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEESSTTCE-EEEETTSCEEEEESEEEECC
T ss_pred             HHHHHHhCCCEEEECCEEEEEEEcCCCeE-EEEECCCCEEEeCCEEEEeC
Confidence            99999999999999999999987666654 68899998885 79999985

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.83  E-value=1.9e-20  Score=149.45  Aligned_cols=115  Identities=20%  Similarity=0.298  Sum_probs=94.9

Q ss_pred             CCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHH
Q 018416           10 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEE   89 (356)
Q Consensus        10 ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~   89 (356)
                      .| .|.+++++   -+++..+    + ..|++++|||||++|+|+|..|+++|++||++++++++++. +|+++++.+++
T Consensus         2 ~p-~d~~~v~~---s~~~l~l----~-~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-~d~ei~~~l~~   71 (119)
T d3lada2           2 AP-VDQDVIVD---STGALDF----Q-NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQK   71 (119)
T ss_dssp             SC-CCSSSEEE---HHHHTSC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHH
T ss_pred             CC-CCCCEEEc---hhHhhCc----c-cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-ccchhHHHHHH
Confidence            44 45567873   2233322    2 25899999999999999999999999999999999999997 89999999999


Q ss_pred             HHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC---cEEecCeEEEecC
Q 018416           90 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIG  136 (356)
Q Consensus        90 ~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~a~G  136 (356)
                      .|+++||++++++++++++.++++  ..+++.++   +++++|.|++|+|
T Consensus        72 ~l~~~Gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          72 ILTKQGLKILLGARVTGTEVKNKQ--VTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHTTEEEEETCEEEEEEECSSC--EEEEEESSSEEEEEEESEEEECSC
T ss_pred             HHHhcCceeecCcEEEEEEEeCCE--EEEEEEECCCCEEEECCEEEEeeC
Confidence            999999999999999999985555  23444333   5799999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.83  E-value=1.1e-20  Score=151.91  Aligned_cols=122  Identities=17%  Similarity=0.165  Sum_probs=100.7

Q ss_pred             CccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHH
Q 018416            5 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA   84 (356)
Q Consensus         5 p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~   84 (356)
                      |+.|.+|+.  ++++   |.+++..+    . ..|++++|||||++|+|+|..|+++|.+||++++++++++. +|++++
T Consensus         2 ~~lP~ip~~--~~i~---ts~~~l~l----~-~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-~d~~~~   70 (125)
T d1ojta2           2 TKLPFIPED--PRII---DSSGALAL----K-EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLV   70 (125)
T ss_dssp             CCCSSCCCC--TTEE---CHHHHTTC----C-CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHH
T ss_pred             CCCCCCCCC--CcEE---cHHHhhCc----c-ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-chhhHH
Confidence            666777764  5676   34444332    2 25899999999999999999999999999999999999997 899999


Q ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCC
Q 018416           85 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGI  137 (356)
Q Consensus        85 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~  137 (356)
                      +.+.+.|+++||++++++.+++++.++++....++..+|  +++++|.|++|+|+
T Consensus        71 ~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          71 KVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             HHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             HHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            999999999999999999999998866664334444444  47999999999995

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.83  E-value=5.6e-20  Score=161.17  Aligned_cols=157  Identities=24%  Similarity=0.268  Sum_probs=114.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc--------------------------C--------CccCCH----
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--------------------------M--------ARLFTP----   81 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~--------------------------l--------~~~~d~----   81 (356)
                      ..++|||+|+.|+++|..+++.|.+|+++++.+.-                          .        ...++.    
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            46999999999999999999999999999976410                          0        000111    


Q ss_pred             --------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEe--------cCCCCCchhh-
Q 018416           82 --------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG--------IGIRPNTSLF-  144 (356)
Q Consensus        82 --------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a--------~G~~p~~~l~-  144 (356)
                              .+...++..++..||+++.+..  .+..  +.........++..+.+|.++++        +|++||++.+ 
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~~--~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~  159 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELG  159 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSS
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccEE--EEcc--CcccceeccccceEEecccEEEEcCCCccccccceecCCCCC
Confidence                    1223344566778999987753  3432  22222223334467899999998        4889998843 


Q ss_pred             -h-ccccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC
Q 018416          145 -E-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  210 (356)
Q Consensus       145 -~-~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~  210 (356)
                       + .++++ ++|+|.||++||||.|+|||+|||+..+.          ++..|..||+.||++|+|...
T Consensus       160 l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------~~~~A~~~g~~aa~~i~g~~~  218 (223)
T d1ebda1         160 LEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPA----------LAHKASYEGKVAAEAIAGHPS  218 (223)
T ss_dssp             TTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTSCCC
T ss_pred             hHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCCC
Confidence             2 34666 67899999999999999999999987653          467899999999999998763

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=3.1e-20  Score=148.77  Aligned_cols=96  Identities=23%  Similarity=0.333  Sum_probs=87.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .|++++|||||++|+|+|..|+++|++||++++++++++. +|+++++.+++.|+++||++++++++++++.++++....
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~  100 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVE  100 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEE
Confidence            5899999999999999999999999999999999999997 899999999999999999999999999998877776666


Q ss_pred             EEeCCC-----cEEecCeEEEe
Q 018416          118 VNLRDG-----NRLPTDMVVVG  134 (356)
Q Consensus       118 v~~~~g-----~~i~~D~vi~a  134 (356)
                      +.+.++     +++++|.|++|
T Consensus       101 ~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2         101 IVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEEeCCCCCeEEEEeCEEEEC
Confidence            666544     47999999986

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.82  E-value=5.1e-20  Score=146.43  Aligned_cols=114  Identities=18%  Similarity=0.359  Sum_probs=95.8

Q ss_pred             CCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCC---CcEEEEeeCCccCCccCCHHHHHH
Q 018416           10 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK---INVTMVFPEAHCMARLFTPKIASY   86 (356)
Q Consensus        10 ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G---~~Vtlv~~~~~~l~~~~d~~~~~~   86 (356)
                      |||.+  ++   .+.+++..+    + ..|++++|||||++|+|+|..|.+++   .+||++++++++++. +|+++++.
T Consensus         1 iPG~~--~~---~t~~~~~~l----~-~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-~d~~~~~~   69 (117)
T d1aoga2           1 IPGIE--HC---ISSNEAFYL----P-EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREE   69 (117)
T ss_dssp             CTTGG--GC---BCHHHHTTC----S-SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-SCHHHHHH
T ss_pred             CcCcc--ce---EcHHHHhCc----h-hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-cchHHHHH
Confidence            57764  33   455555432    2 25799999999999999998877654   579999999999986 89999999


Q ss_pred             HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEec
Q 018416           87 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  135 (356)
Q Consensus        87 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  135 (356)
                      +.+.|+++||++++++++++++.++++.+ .+++++|++++||.||+|+
T Consensus        70 l~~~l~~~GV~v~~~~~v~~ie~~~~~~~-~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          70 LTKQLTANGIQILTKENPAKVELNADGSK-SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEECTTSCE-EEEETTSCEEEESEEEECS
T ss_pred             HHHHHHhcCcEEEcCCEEEEEEEcCCCeE-EEEECCCcEEEeCEEEEeC
Confidence            99999999999999999999987666654 5889999999999999985

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.82  E-value=4.3e-20  Score=166.93  Aligned_cols=152  Identities=24%  Similarity=0.241  Sum_probs=108.5

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------------------------------------cCCH-H
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------LFTP-K   82 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-------------------------------------~~d~-~   82 (356)
                      .++|||+|+.|+++|..++++|.+|+++++.+.+...                                     .++. .
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKE  123 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHHH
Confidence            4999999999999999999999999999998765210                                     0111 0


Q ss_pred             HHHH------------HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh-----
Q 018416           83 IASY------------YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE-----  145 (356)
Q Consensus        83 ~~~~------------~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~-----  145 (356)
                      ..+.            ..+.+...++....+.... +..  +.   .+. .+|++++||.+++|+|.+|++..+.     
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~d--~~---~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~~~  196 (261)
T d1mo9a1         124 VVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAK-VID--NH---TVE-AAGKVFKAKNLILAVGAGPGTLDVPEQPRS  196 (261)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCE-EEE--TT---EEE-ETTEEEEBSCEEECCCEECCCCCSTCEECC
T ss_pred             HHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEE-Eee--ec---ccc-cccceEeeeeeeeccCCCCCcCcccccccc
Confidence            0000            1122333444444443322 221  22   222 3678999999999999999875332     


Q ss_pred             -----c-cccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          146 -----G-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       146 -----~-~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                           . +++. ++|+|.||++||||.|+|||+|||+..+.          ++..|..||+.||.||+|..
T Consensus       197 ~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~~----------l~~~A~~~G~~aa~~i~G~k  257 (261)
T d1mo9a1         197 AELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM----------EMFKARKSGCYAARNVMGEK  257 (261)
T ss_dssp             HHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSC----------SHHHHHHHHHHHHHHHTTCC
T ss_pred             cccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCcc----------cHHHHHHHHHHHHHHHCCCC
Confidence                 1 2555 67899999999999999999999987653          57789999999999999865

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.81  E-value=1.6e-19  Score=143.47  Aligned_cols=114  Identities=25%  Similarity=0.365  Sum_probs=93.3

Q ss_pred             CCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHH
Q 018416            8 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY   87 (356)
Q Consensus         8 ~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~   87 (356)
                      |++|+.+  +++   +-+++..+    + ..|++++|||||++|+|+|..|+++|.+||++++++++++. +|+++++.+
T Consensus         1 P~~~~~~--~i~---~s~~~l~~----~-~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l   69 (117)
T d1ebda2           1 PNFKFSN--RIL---DSTGALNL----G-EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAII   69 (117)
T ss_dssp             TTBCCCS--SEE---CHHHHHTC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHH
T ss_pred             CcCCCCC--CEE---ChhHhhCh----h-hcCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHH
Confidence            4677764  676   33444333    1 25799999999999999999999999999999999999997 899999999


Q ss_pred             HHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe-CCC--cEEecCeEEEe
Q 018416           88 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDG--NRLPTDMVVVG  134 (356)
Q Consensus        88 ~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~-~~g--~~i~~D~vi~a  134 (356)
                      .+.|+++||++++++++++++.++++..  +.+ .+|  +++++|.|+++
T Consensus        70 ~~~l~~~GI~i~~~~~v~~i~~~~~~~~--v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          70 KKRLKKKGVEVVTNALAKGAEEREDGVT--VTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHTTCEEEESEEEEEEEEETTEEE--EEEEETTEEEEEEESEEEEC
T ss_pred             HHHHHhcCCEEEcCCEEEEEEEcCCEEE--EEEEeCCCEEEEEeEEEEEC
Confidence            9999999999999999999987555532  333 344  56999999985

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.81  E-value=1.5e-19  Score=143.59  Aligned_cols=98  Identities=19%  Similarity=0.352  Sum_probs=89.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHH---CCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVI---NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK  114 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~---~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~  114 (356)
                      .|++++|||||++|+|+|..|++   .|.+||++++++++++. +|+++++.+++.|+++||++++++.+++++.++++.
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~   95 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT   95 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-ccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCE
Confidence            57999999999999999988765   48999999999999987 899999999999999999999999999998755654


Q ss_pred             EEEEEeCCCcEEecCeEEEecCC
Q 018416          115 VVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus       115 v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                       ..+.+++|++++||.|++|+|+
T Consensus        96 -~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          96 -RHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             -EEEEETTSCEEEESEEEECSCE
T ss_pred             -EEEEECCCCEEEcCEEEEecCC
Confidence             4688999999999999999995

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.80  E-value=1.4e-19  Score=158.56  Aligned_cols=156  Identities=21%  Similarity=0.257  Sum_probs=114.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------cCC---
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFT---   80 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------~~d---   80 (356)
                      -.|+|||+|++|+++|..++++|.+|+++++.+.+...                                    .+.   
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAA   83 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHH
Confidence            36999999999999999999999999999987664210                                    001   


Q ss_pred             ---------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEE-EEEeCCCcEEecCeEEEecC-----CCCCchhh-
Q 018416           81 ---------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV-AVNLRDGNRLPTDMVVVGIG-----IRPNTSLF-  144 (356)
Q Consensus        81 ---------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~-~v~~~~g~~i~~D~vi~a~G-----~~p~~~l~-  144 (356)
                               ..+...+...+++.+|+++.+...  +..  +.... .....+...+.+|.||+|+|     ++|+++.+ 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~--~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~  159 (221)
T d1dxla1          84 MMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK--FVS--PSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLN  159 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE--EEE--TTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSC
T ss_pred             HHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccc--ccc--ccccccccccccccccccceEEEeECCCccCccccCCCCC
Confidence                     112334455677789998865432  221  11111 11223446789999999998     56888743 


Q ss_pred             -h-ccccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          145 -E-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       145 -~-~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                       + .++++ ++|+|.||+++|||+|+|||+|||+..+.          ++..|..+|+.||++|+|+.
T Consensus       160 l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~~----------l~~~A~~~g~~aa~~i~g~~  217 (221)
T d1dxla1         160 LDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM----------LAHKAEEDGVACVEYLAGKV  217 (221)
T ss_dssp             CTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCC----------CHHHHHHHHHHHHHHHTTSC
T ss_pred             hHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCC
Confidence             2 24666 77999999999999999999999997653          57789999999999999875

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.8e-19  Score=144.90  Aligned_cols=117  Identities=20%  Similarity=0.275  Sum_probs=94.9

Q ss_pred             CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHH
Q 018416            9 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE   88 (356)
Q Consensus         9 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~   88 (356)
                      .|||.+.  ++   |-+++..+    + ..+|+++|||||++|+|+|..|+++|.+||++++++++++. +|+++++.+.
T Consensus         2 ~IPG~e~--~~---ts~~~~~l----~-~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~   70 (125)
T d3grsa2           2 QIPGASL--GI---TSDGFFQL----E-ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCT   70 (125)
T ss_dssp             TSTTGGG--SB---CHHHHTTC----C-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHH
T ss_pred             CCCCccc--cC---CHHHHhCh----h-hcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHH
Confidence            4788753  33   44555443    2 24799999999999999999999999999999999999987 8999999999


Q ss_pred             HHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE-eCCCc------EEecCeEEEecC
Q 018416           89 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN-LRDGN------RLPTDMVVVGIG  136 (356)
Q Consensus        89 ~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~-~~~g~------~i~~D~vi~a~G  136 (356)
                      +.|+++||++++++++++++.++++...... ..+|+      .+++|.|++|+|
T Consensus        71 ~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          71 EELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             HHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            9999999999999999999886666333322 23442      478999999998

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.79  E-value=1.8e-19  Score=144.56  Aligned_cols=97  Identities=25%  Similarity=0.358  Sum_probs=86.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .|++++|||||++|+|+|..|+++|.+||++++++++++. +|+++++.+.+.|+++||++++++++++++.++++....
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~  102 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLT  102 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEE
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-hhhcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEE
Confidence            6899999999999999999999999999999999999986 899999999999999999999999999999766665555


Q ss_pred             EEeCCC---cEEecCeEEEec
Q 018416          118 VNLRDG---NRLPTDMVVVGI  135 (356)
Q Consensus       118 v~~~~g---~~i~~D~vi~a~  135 (356)
                      +...++   ++++||.|++|.
T Consensus       103 ~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2         103 VEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             EEESSSCCCEEEEESEEECCC
T ss_pred             EEECCCCeEEEEEcCEEEEcC
Confidence            555443   358999999873

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.78  E-value=3e-19  Score=141.46  Aligned_cols=95  Identities=25%  Similarity=0.421  Sum_probs=83.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .|++++|||||++|+|+|..|+++|++||++++.+++++. +|+++++.+.+.|+++||+++++++|++++   ++....
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~---~~~~~~   95 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE---NGCLLA   95 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEEE---TTEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHhhcceEEcCcEEEEEc---CCeEEE
Confidence            5799999999999999999999999999999999999997 899999999999999999999999999985   333222


Q ss_pred             EE-eCCCcEEecCeEEEecC
Q 018416          118 VN-LRDGNRLPTDMVVVGIG  136 (356)
Q Consensus       118 v~-~~~g~~i~~D~vi~a~G  136 (356)
                      .. ..+++++++|.|++|+|
T Consensus        96 ~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          96 NDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             ECSSSCCCEECCSCEEECCC
T ss_pred             EEcCCCeEEEEcCEEEEecC
Confidence            22 22335799999999998

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=2.2e-18  Score=152.98  Aligned_cols=159  Identities=18%  Similarity=0.223  Sum_probs=110.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCC---CcEEEEeeCCc--------------c---------C---Cc----------cCC-
Q 018416           41 NAVVIGGGYIGMECAASLVINK---INVTMVFPEAH--------------C---------M---AR----------LFT-   80 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G---~~Vtlv~~~~~--------------~---------l---~~----------~~d-   80 (356)
                      +|+|||+|+.|+++|..++++|   .+|+++++..-              +         +   +.          .+| 
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~   82 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL   82 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence            7999999999999998887765   57999997531              0         0   00          011 


Q ss_pred             H-----------HHHHHHHHHHHhCCCEEEeCCeeeEEEE-cCCCcEEEEEeCCCc--EEecCeEEEecCCCCCchh---
Q 018416           81 P-----------KIASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTSL---  143 (356)
Q Consensus        81 ~-----------~~~~~~~~~l~~~GV~v~~~~~v~~i~~-~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~l---  143 (356)
                      +           .....+...|+.+||+++.+.....-.. ........+...+|+  ++++|.+|+++|.+|....   
T Consensus        83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~  162 (233)
T d1xdia1          83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGS  162 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCE
T ss_pred             eeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccccc
Confidence            0           1112355678889999998743211100 001122345556664  6999999999999886532   


Q ss_pred             ---------hhccccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          144 ---------FEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       144 ---------~~~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                               ...++++ ++|+|.||++||||.|+|||+|||+..+          .+...|..+|+.||.|++|..
T Consensus       163 ~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA~GDv~~~~----------~l~~~A~~~g~~aa~~~~g~~  228 (233)
T d1xdia1         163 VPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGEG  228 (233)
T ss_dssp             EECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTCC
T ss_pred             cccccccccchhhhcccCCCcCCcCCCcccCCCCEEEEEEeCCCc----------hhHHHHHHHHHHHHHHHcCCC
Confidence                     2223455 5688999999999999999999998754          356689999999999999864

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.76  E-value=4.2e-18  Score=146.67  Aligned_cols=154  Identities=16%  Similarity=0.223  Sum_probs=121.6

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC--------------------CccCCHHHHHHHHHHHHhCCCEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------------------ARLFTPKIASYYEEYYKSKGVKF   98 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l--------------------~~~~d~~~~~~~~~~l~~~GV~v   98 (356)
                      .++|+|||||++|+++|..+++.|.+|+++++.....                    ....++++...+++.+++.|+++
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i   84 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   84 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence            5799999999999999999999999999998654321                    11134778888888889999999


Q ss_pred             EeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC-----CCCchhhhccccc-ccCcEEEec-ccccCCCCEEEE
Q 018416           99 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI-----RPNTSLFEGQLTL-EKGGIKVTG-RLQSSNSSVYAV  171 (356)
Q Consensus        99 ~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~-----~p~~~l~~~~l~~-~~g~I~vd~-~l~ts~~~VyAi  171 (356)
                      ..+ .|++++..++.  ..+. .+.....+|.+++++|.     .|++.+++..+++ ++|.|.+|+ +++|+.|+|||+
T Consensus        85 ~~~-~V~~~~~~~~~--~~v~-~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~~~Ts~~GV~a~  160 (192)
T d1vdca1          85 FTE-TVTKVDFSSKP--FKLF-TDSKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAA  160 (192)
T ss_dssp             ECC-CCCEEECSSSS--EEEE-CSSEEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEEC
T ss_pred             eee-eEEecccccCc--EEec-ccceeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCceEecCCCEEEe
Confidence            866 67787653333  3343 45567899999999884     5899998888877 679999995 899999999999


Q ss_pred             ccccccCccccCcccccccHHHHHHHHHHHHHHH
Q 018416          172 GDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI  205 (356)
Q Consensus       172 GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  205 (356)
                      |||...+.         ..+..|..+|+.||.++
T Consensus       161 GDv~~~~~---------r~~v~A~g~G~~aA~~~  185 (192)
T d1vdca1         161 GDVQDKKY---------RQAITAAGTGCMAALDA  185 (192)
T ss_dssp             GGGGCSSC---------CCHHHHHHHHHHHHHHH
T ss_pred             eecCCccc---------ceEEEEEechHHHHHHH
Confidence            99987653         24567888999998765

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.3e-18  Score=148.49  Aligned_cols=154  Identities=21%  Similarity=0.308  Sum_probs=109.9

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc------------------------------c-C---CccCCH-----
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH------------------------------C-M---ARLFTP-----   81 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~------------------------------~-l---~~~~d~-----   81 (356)
                      .++|||+|++|+++|..+++.|.+|+++++.+.                              . .   ...++.     
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE   84 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence            589999999999999999999999999987531                              0 0   000111     


Q ss_pred             -------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC--------Cch---h
Q 018416           82 -------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP--------NTS---L  143 (356)
Q Consensus        82 -------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p--------~~~---l  143 (356)
                             .+.....+.+++.||+++.+.....    ....+ .+. .+..++.++.+++++|.+|        |++   |
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~----~~~~~-~~~-~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L  158 (221)
T d3grsa1          85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFT----SDPKP-TIE-VSGKKYTAPHILIATGGMPSTPHERVPNTKDLSL  158 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCEEC----SCSSC-EEE-ETTEEEECSCEEECCCEEECCCCTEEESCTTTTG
T ss_pred             hhheEEeeeccchhhhhccCceEEEEEeeeec----cccce-eee-eeccccccceeEEecCccccCCCccccCCCCcCc
Confidence                   1222344567889999987753211    11111 122 2346788999999998554        444   2


Q ss_pred             hhccccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC
Q 018416          144 FEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  210 (356)
Q Consensus       144 ~~~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~  210 (356)
                      .+.++++ ++|+|.||+++|||.|+|||+|||+..+.          +...|..+|+.||++|++...
T Consensus       159 ~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------l~~~A~~~G~~aa~~~~~~~~  216 (221)
T d3grsa1         159 NKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKAL----------LTPVAIAAGRKLAHRLFEYKE  216 (221)
T ss_dssp             GGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSC----------CHHHHHHHHHHHHHHHHSCCT
T ss_pred             hhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcC----------cHHHHHHHHHHHHHHHcCCCC
Confidence            2334666 67899999999999999999999987542          466799999999999998653

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=3.1e-18  Score=151.52  Aligned_cols=155  Identities=18%  Similarity=0.174  Sum_probs=111.8

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------------------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-------------------------------------------   77 (356)
                      .++|||+|+.|+++|..+++.|.+|.++|+.+.....                                           
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            5899999999999999999999999999965421000                                           


Q ss_pred             -cCCH------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCCCCch
Q 018416           78 -LFTP------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        78 -~~d~------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  142 (356)
                       .+|-            .+...+...|++++|+++.+...  +..  .+. ..+...+++  .+.++.+++++|.+|...
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~--~~~--~~~-~~v~~~~~~~~~i~a~~ivi~~G~~p~~~  159 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK--FIG--PHK-IMATNNKGKEKVYSAERFLIATGERPRYL  159 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEE--EEE--TTE-EEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEe--ecc--ccc-eecccccccccccccccceeecCCCceeE
Confidence             0110            12223455677889999877543  321  222 345455554  588999999999998753


Q ss_pred             h-----------hhccccc--ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          143 L-----------FEGQLTL--EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       143 l-----------~~~~l~~--~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      .           ...++.+  ..|.|.||++||||.|+|||+|||+..+.         .++..|+.+|+.||++|+|..
T Consensus       160 ~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~~---------~l~~~A~~eG~~aa~~~~g~~  230 (235)
T d1h6va1         160 GIRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKL---------ELTPVAIQAGRLLAQRLYGGS  230 (235)
T ss_dssp             SSEEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCC
T ss_pred             EEeeccceeeccccceeeeccccCccccCCccccCCCCEEEEEeccCCCc---------ccHHHHHHHHHHHHHHHcCCC
Confidence            1           1223444  35889999999999999999999986542         356679999999999999865

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=1.2e-17  Score=146.53  Aligned_cols=153  Identities=23%  Similarity=0.250  Sum_probs=110.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc---------------------------c-----C-----CccCCH
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH---------------------------C-----M-----ARLFTP   81 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~---------------------------~-----l-----~~~~d~   81 (356)
                      .-.++|||+|+.|+++|..++++|.+|+|+++.+-                           .     .     ....+.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI   84 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehH
Confidence            35799999999999999999999999999997530                           0     0     000000


Q ss_pred             ------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch-------
Q 018416           82 ------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS-------  142 (356)
Q Consensus        82 ------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~-------  142 (356)
                                  .........+++.+++++.+...  +..  ..   .+ ..++.++.+|.+++++|.+|...       
T Consensus        85 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~--~~~--~~---~~-~~~~~~i~a~~viiAtG~~p~~lp~~~~~~  156 (220)
T d1lvla1          85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK--VLD--GK---QV-EVDGQRIQCEHLLLATGSSSVELPRRPRTK  156 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEE--EEE--TT---EE-EETTEEEECSEEEECCCEEECCBTEEECCS
T ss_pred             HHHhhhheeEEeeeccchhhhhccCceEEEEeeec--ccC--cc---cc-cccceeEeeceeeEcCCCCccccccccccc
Confidence                        01122334566788888876532  221  11   11 23567899999999999988652       


Q ss_pred             ---hhhcccccccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          143 ---LFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       143 ---l~~~~l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                         +....+.+++++|.||++||||.|+|||+|||+..+.          ++..|..+|+.|+++|+|..
T Consensus       157 ~~~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~~~~~----------l~~~a~~~g~~~a~~i~G~~  216 (220)
T d1lvla1         157 GFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM----------LAHRAMAQGEMVAEIIAGKA  216 (220)
T ss_dssp             SSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSSC----------CHHHHHHHHHHHHHHHTTCC
T ss_pred             CCcceeeehhhcCCcccccchhhcCCCCEEEEEEeCCccc----------chhhhhhhHHHHHHHHcCCC
Confidence               1111244478999999999999999999999998653          57789999999999999876

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.74  E-value=4.2e-18  Score=143.66  Aligned_cols=157  Identities=22%  Similarity=0.277  Sum_probs=113.4

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCCccCCccCCHHHHHH---------HHHHHHhCCCEEEeCCeeeEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASY---------YEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~~~l~~~~d~~~~~~---------~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      +|||||||||++|+|+|..|++++.  +||++++.+.++.....+.....         ....+...++++..++. ..+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~   80 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSA-TGI   80 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCE-EEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeee-Eee
Confidence            7999999999999999999999874  79999999877655333322211         12345667888876543 333


Q ss_pred             EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc---------cccccCcEEEecc-c-ccCCCCEEEEccccc
Q 018416          108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---------LTLEKGGIKVTGR-L-QSSNSSVYAVGDVAA  176 (356)
Q Consensus       108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~---------l~~~~g~I~vd~~-l-~ts~~~VyAiGD~~~  176 (356)
                      .  .+.  ..+.+.+++++++|.+|+|+|.+|++.++...         ...+.+++.++.. + .++.++||++||++.
T Consensus        81 ~--~~~--~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~  156 (186)
T d1fcda1          81 D--PDK--KLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASI  156 (186)
T ss_dssp             C--TTT--TEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEE
T ss_pred             e--ecc--ceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccccc
Confidence            2  222  24667889999999999999999998765432         1224566666543 3 458999999999986


Q ss_pred             cCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          177 FPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       177 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      ....       ...+..|.+||+.+|+||..
T Consensus       157 ~~~~-------p~~~~~A~~q~~~~A~ni~~  180 (186)
T d1fcda1         157 ANPM-------PKSGYSANSQGKVAAAAVVV  180 (186)
T ss_dssp             CTTC-------CSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-------CchHhHHHHHHHHHHHHHHH
Confidence            5321       24578999999999999874

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.1e-17  Score=143.52  Aligned_cols=155  Identities=21%  Similarity=0.284  Sum_probs=118.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC---------------CccCCHHHHHHHHHHHHhCCCEEEeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------ARLFTPKIASYYEEYYKSKGVKFVKGT  102 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l---------------~~~~d~~~~~~~~~~l~~~GV~v~~~~  102 (356)
                      +.++|+|||||++|+++|..+++.|.+|+++++.+...               ....+.++.+.....+.+.++++..+ 
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   82 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence            46789999999999999999999999999998764311               11235677788888889999999865 


Q ss_pred             eeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC-----CchhhhcccccccCcEEEe-----cccccCCCCEEEEc
Q 018416          103 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP-----NTSLFEGQLTLEKGGIKVT-----GRLQSSNSSVYAVG  172 (356)
Q Consensus       103 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p-----~~~l~~~~l~~~~g~I~vd-----~~l~ts~~~VyAiG  172 (356)
                      .|+++...++.  ..++. ....+.++.+++++|..|     +..+++..+++++|+|.+|     +.++||.|+|||+|
T Consensus        83 ~V~~~~~~~~~--~~v~~-~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~~g~i~~~~~~~~~~~~T~v~gV~aaG  159 (190)
T d1trba1          83 HINKVDLQNRP--FRLNG-DNGEYTCDALIIATGASARYHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAG  159 (190)
T ss_dssp             CEEEEECSSSS--EEEEE-SSCEEEEEEEEECCCEEECCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECG
T ss_pred             eeEEEecCCCc--EEEEE-eeeeEeeeeeeeecceeeeeecccceeecceEecCCcEEEEecCCcccccccccCeEEEeE
Confidence            57777753322  33443 456899999999999654     4556666667778999998     45689999999999


Q ss_pred             cccccCccccCcccccccHHHHHHHHHHHHHHH
Q 018416          173 DVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI  205 (356)
Q Consensus       173 D~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  205 (356)
                      ||+....         .++..|..+|..||.++
T Consensus       160 Dv~~~~~---------~q~i~Aag~G~~AA~~a  183 (190)
T d1trba1         160 DVMDHIY---------RQAITSAGTGCMAALDA  183 (190)
T ss_dssp             GGGCSSS---------CCHHHHHHHHHHHHHHH
T ss_pred             EecCcce---------eEEEEEeccHHHHHHHH
Confidence            9987542         34667888898888654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.72  E-value=8.8e-18  Score=147.06  Aligned_cols=155  Identities=23%  Similarity=0.268  Sum_probs=110.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------------c
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------L   78 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------------~   78 (356)
                      .++|||||+.|+.+|..+++.|.+|.++++.+.....                                          .
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~   84 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVA   84 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCCE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcce
Confidence            5999999999999999999999999999975321000                                          0


Q ss_pred             CC------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCch--
Q 018416           79 FT------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS--  142 (356)
Q Consensus        79 ~d------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~--  142 (356)
                      ++            ..+...+...++..||+++.+.....    .... ......++  ..+.++.+++++|.+|...  
T Consensus        85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~----~~~~-~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~  159 (229)
T d3lada1          85 IDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL----AGKK-VEVTAADGSSQVLDTENVILASGSKPVEIPR  159 (229)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEEC----STTC-EEEECTTSCEEEECCSCEEECCCEEECCCTE
T ss_pred             eecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEccc----ccce-eeccccCccceeeecccccccCCcccccccc
Confidence            01            01223345566778999987654321    1111 22333332  4578999999999887543  


Q ss_pred             -------hhh-ccccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC
Q 018416          143 -------LFE-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  210 (356)
Q Consensus       143 -------l~~-~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~  210 (356)
                             ++. .++.+ ++|+|.||++||||.|+|||+|||+..+.          +...|..+|+.||++|+|...
T Consensus       160 ~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~~----------l~~~A~~~G~~aa~~i~g~~~  226 (229)
T d3lada1         160 RPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAERIAGHKA  226 (229)
T ss_dssp             EECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHCCC
T ss_pred             cccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchHH----------HHHHHHHHHHHHHHHHcCCCC
Confidence                   222 23555 67999999999999999999999987653          467799999999999998763

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2e-17  Score=132.16  Aligned_cols=97  Identities=22%  Similarity=0.401  Sum_probs=81.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC--cE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG--KV  115 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g--~v  115 (356)
                      .|++++|||||++|+|+|..|+++|++||++++ +++++. +|+++++.+.+.|+++||++++++.+++++..+++  ..
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~-~~~l~~-~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~   96 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGR   96 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSSSTT-SCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCE
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEe-chhhcc-CCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccE
Confidence            589999999999999999999999999999987 478887 89999999999999999999999999999754332  12


Q ss_pred             EEEEeCC--C---cEEecCeEEEecC
Q 018416          116 VAVNLRD--G---NRLPTDMVVVGIG  136 (356)
Q Consensus       116 ~~v~~~~--g---~~i~~D~vi~a~G  136 (356)
                      ..+.+.+  +   ..+++|.|++|+|
T Consensus        97 ~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          97 LKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEEEEEECCCCcEEEEECCEEEEEeC
Confidence            2333332  2   2467999999998

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.71  E-value=3.1e-17  Score=144.81  Aligned_cols=158  Identities=18%  Similarity=0.229  Sum_probs=103.4

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------cCCH----
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFTP----   81 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----------------------------------~~d~----   81 (356)
                      .++|||+|+.|+++|..++++|++|+|+++.+.+...                                   .+..    
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~~   87 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLR   87 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHHH
Confidence            5899999999999999999999999999987654110                                   0111    


Q ss_pred             --------HHHHHHHHHHHhCCCEEEeCCeeeEEE--------EcCCCcEEEEEeCCCcEEecCeEEEecC-CCCCchh-
Q 018416           82 --------KIASYYEEYYKSKGVKFVKGTVLSSFD--------VDSNGKVVAVNLRDGNRLPTDMVVVGIG-IRPNTSL-  143 (356)
Q Consensus        82 --------~~~~~~~~~l~~~GV~v~~~~~v~~i~--------~~~~g~v~~v~~~~g~~i~~D~vi~a~G-~~p~~~l-  143 (356)
                              .+...+...+..++++++.+.......        ...... ........+...++-++++.| +.|++.. 
T Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  166 (229)
T d1ojta1          88 AYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYE-QAAPTGEKKIVAFKNCIIAAGSRAPNGKLI  166 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETT-EEEEEEEEEEEEEEEEEECCCEEEECGGGT
T ss_pred             HHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCcccccccccccccc-cccccccccceecceEEEEecccCCccccc
Confidence                    112223344566788877554321110        000000 000011123455666666665 4565542 


Q ss_pred             -hhc-cccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          144 -FEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       144 -~~~-~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                       ++. ++++ ++|+|+||++||||.|+|||+|||+..+.          ++..|+.||+.||.+|+|..
T Consensus       167 ~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~----------l~~~A~~eG~~Aa~~i~G~~  225 (229)
T d1ojta1         167 SAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGHVAAENCAGHK  225 (229)
T ss_dssp             TGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHHHTTCC
T ss_pred             chhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcc----------hHHHHHHHHHHHHHHHcCCC
Confidence             333 3665 78999999999999999999999987653          46679999999999999875

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.66  E-value=2.4e-17  Score=137.16  Aligned_cols=131  Identities=13%  Similarity=0.015  Sum_probs=101.2

Q ss_pred             CccC-CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEE--CCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCH
Q 018416            5 LEEF-GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVI--GGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP   81 (356)
Q Consensus         5 p~~~-~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVv--GgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~   81 (356)
                      |..+ +|||.+..+++.+ |.+|+...    +..++++++|+  |||++|+|+|+.|+++|++||++++.+.+++. +++
T Consensus         9 ~~~~~pipG~~~~~~~v~-t~~d~l~~----~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~-~~~   82 (156)
T d1djqa2           9 CLTHDPIPGADASLPDQL-TPEQVMDG----KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM-HFT   82 (156)
T ss_dssp             TTTSSCCTTCCTTSTTEE-CHHHHHHT----CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH-HHT
T ss_pred             CCCCCCCCCccCCCCEEE-CHHHHhcC----ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc-cch
Confidence            4444 7999987655444 66666443    22245566665  99999999999999999999999999999887 788


Q ss_pred             HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc
Q 018416           82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ  147 (356)
Q Consensus        82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~  147 (356)
                      +....+.+.|+++||++++++++.+++.  +    .+.+.+....+++.++.++|..|++...+..
T Consensus        83 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~--~----~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~  142 (156)
T d1djqa2          83 LEYPNMMRRLHELHVEELGDHFCSRIEP--G----RMEIYNIWGDGSKRTYRGPGVSPRDANTSHR  142 (156)
T ss_dssp             TCHHHHHHHHHHTTCEEEETEEEEEEET--T----EEEEEETTCSCSCCCCCCTTSCSSCCCCCCE
T ss_pred             hHHHHHHHHHhhccceEEeccEEEEecC--c----ceEEEeeeccccceeeeeeEEEecccCCccC
Confidence            8999999999999999999999999974  2    2334444455678888888888888766543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=3.6e-15  Score=126.34  Aligned_cols=156  Identities=15%  Similarity=0.228  Sum_probs=117.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC--cc-----------CCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA--HC-----------MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~--~~-----------l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      .|+|||||++|+++|..++++|.+|++++++.  ++           .+....+.+...+....++.+++......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            58999999999999999999999999999742  11           111123677777888888999999988888877


Q ss_pred             EEcCCC-cEEEEEeCCCcEEecCeEEEecCCCCCch-hhhccccc-ccCcEEEecccccCCCCEEEEccccccCccccCc
Q 018416          108 DVDSNG-KVVAVNLRDGNRLPTDMVVVGIGIRPNTS-LFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE  184 (356)
Q Consensus       108 ~~~~~g-~v~~v~~~~g~~i~~D~vi~a~G~~p~~~-l~~~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~  184 (356)
                      ...+.. ........+++++.++.++.++|..++.. +....+.. ..|.|.||+.++|+.|+||++|||...+.     
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~-----  157 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY-----  157 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS-----
T ss_pred             cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCccc-----
Confidence            653322 23445566778899999999999765544 33333444 67889999999999999999999998653     


Q ss_pred             ccccccHHHHHHHHHHHHHHH
Q 018416          185 TRRLEHVDSARKSAKHAVAAI  205 (356)
Q Consensus       185 ~~~~~~~~~A~~~g~~aa~~i  205 (356)
                          .....|..+|..+|.++
T Consensus       158 ----~~~vva~g~G~~aA~~~  174 (184)
T d1fl2a1         158 ----KQIIIATGEGAKASLSA  174 (184)
T ss_dssp             ----CCHHHHHHHHHHHHHHH
T ss_pred             ----CCcEEEEECcHHHHHHH
Confidence                23445667777776654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=4.4e-15  Score=130.21  Aligned_cols=154  Identities=23%  Similarity=0.310  Sum_probs=103.4

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc------------CCHH--------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------FTPK--------------------------   82 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~------------~d~~--------------------------   82 (356)
                      .|+|||+|+.|+.+|..+++.|.+|+++++.+.+....            ...+                          
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~   86 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVAN   86 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecchhh
Confidence            68999999999999999999999999999876542100            0000                          


Q ss_pred             -----------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--------cEEecCeE--------EEec
Q 018416           83 -----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--------NRLPTDMV--------VVGI  135 (356)
Q Consensus        83 -----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--------~~i~~D~v--------i~a~  135 (356)
                                 +.......+++.+|+++.+..  ++.  +... ..+....+        ..++++.+        +.++
T Consensus        87 ~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a--~f~--~~~~-~~v~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~  161 (233)
T d1v59a1          87 FQKAKDDAVKQLTGGIELLFKKNKVTYYKGNG--SFE--DETK-IRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE--EES--SSSE-EEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCS
T ss_pred             hhheeeeEEEEeecceeeeeccCCeEEEEEEE--EEe--cCCC-cEEEecccccceeeeeeeccCCeEEEecccccceec
Confidence                       111123334555677665432  121  1111 12222211        12344444        4489


Q ss_pred             CCCCCchhh--hc-cccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416          136 GIRPNTSLF--EG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       136 G~~p~~~l~--~~-~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  209 (356)
                      |++|+++.+  +. ++++ ++|+|.||++++|+.|+|||+|||+..+.          ++..|..+|+.||++|++..
T Consensus       162 G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~~----------l~~~a~~~G~~aa~~i~~~~  229 (233)
T d1v59a1         162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAAVEMLKTGH  229 (233)
T ss_dssp             CEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccHH----------HHHHHHHHHHHHHHHHccCC
Confidence            999998743  22 3555 67899999999999999999999987653          46679999999999998765

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=2.5e-14  Score=124.47  Aligned_cols=151  Identities=20%  Similarity=0.273  Sum_probs=111.0

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC----------------------------c--------cCC-H--
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------------R--------LFT-P--   81 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~----------------------------~--------~~d-~--   81 (356)
                      .++|||+|+.|+++|..++++|.+|+++|+.+ +..                            .        .++ +  
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL   82 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence            48999999999999999999999999999853 110                            0        011 0  


Q ss_pred             ---------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch---------h
Q 018416           82 ---------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS---------L  143 (356)
Q Consensus        82 ---------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~---------l  143 (356)
                               .+...++..+++.||++..+......    ..    ....+++.+.++.+++++|.+|...         +
T Consensus        83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~----~~----~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l  154 (217)
T d1gesa1          83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD----AK----TLEVNGETITADHILIATGGRPSHPREPANDNINL  154 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEE----TT----EEEETTEEEEEEEEEECCCEEECCCEEESCTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccce----ee----eecCCCceeeeeeeeeecCccccCCCCCCcCCccc
Confidence                     12223445577889998877654332    11    1224678899999999999876542         2


Q ss_pred             hhccccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC
Q 018416          144 FEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  210 (356)
Q Consensus       144 ~~~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~  210 (356)
                      ....+.. +++.|.+|++++|+.|+||++||+....          .++..+.++|+.+++++++...
T Consensus       155 ~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~----------ela~~~~~~G~~v~~~~~~~~p  212 (217)
T d1gesa1         155 EAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKP  212 (217)
T ss_dssp             HHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCT
T ss_pred             ccccEEEcCCccEeeCchhccCCCcEEEECCCccHH----------HHHHHHHHHHHHHHHHHhCCCC
Confidence            2233555 6788999999999999999999998764          4577889999999999998763

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.3e-14  Score=120.95  Aligned_cols=122  Identities=23%  Similarity=0.255  Sum_probs=90.9

Q ss_pred             CccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCc--------------------
Q 018416            5 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN--------------------   64 (356)
Q Consensus         5 p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~--------------------   64 (356)
                      |+.++|||.|+++|++..   |+  ++..  ...+|+|+|||||++|+|+|..+++.|.+                    
T Consensus         2 Pr~p~IpG~d~~~V~~a~---d~--L~~~--~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~   74 (162)
T d1ps9a2           2 PRTPPIDGIDHPKVLSYL---DV--LRDK--APVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQ   74 (162)
T ss_dssp             ECCCCCBTTTSTTEEEHH---HH--HTSC--CCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCS
T ss_pred             CCCCCCCCCCCCCeEEHH---HH--hhCc--cccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhh
Confidence            889999999999999622   22  2111  12689999999999999999999999864                    


Q ss_pred             -----------------EEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEE
Q 018416           65 -----------------VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRL  126 (356)
Q Consensus        65 -----------------Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i  126 (356)
                                       ++.++.....+...++..........++..||++++++++.+++  ++|..  +...+. +++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~gv~--~~~~g~e~~i  150 (162)
T d1ps9a2          75 AGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLH--VVINGETQVL  150 (162)
T ss_dssp             GGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEE--EEETTEEEEE
T ss_pred             hcccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEc--CCCCE--EecCCeEEEE
Confidence                             34444444433333677777888899999999999999999996  45532  333322 358


Q ss_pred             ecCeEEEecCC
Q 018416          127 PTDMVVVGIGI  137 (356)
Q Consensus       127 ~~D~vi~a~G~  137 (356)
                      +||+||+|+|.
T Consensus       151 ~aD~Vv~A~Gq  161 (162)
T d1ps9a2         151 AVDNVVICAGQ  161 (162)
T ss_dssp             CCSEEEECCCE
T ss_pred             ECCEEEECCCC
Confidence            99999999994

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.53  E-value=2.3e-14  Score=126.71  Aligned_cols=154  Identities=21%  Similarity=0.270  Sum_probs=103.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCccCCc------------------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMAR------------------------------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~l~~------------------------------------------   77 (356)
                      .++|||+|+.|+.+|..+++.|. +|.|++..+...+.                                          
T Consensus         5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~~~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~~~~~~Gi~~~~   84 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELDR   84 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEECCG
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCcccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            58999999999999999999985 68898865421000                                          


Q ss_pred             ---cCC-HHHH-----------HHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEe------CCCcEEecCeEEEec
Q 018416           78 ---LFT-PKIA-----------SYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNL------RDGNRLPTDMVVVGI  135 (356)
Q Consensus        78 ---~~d-~~~~-----------~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~------~~g~~i~~D~vi~a~  135 (356)
                         .+| +.+.           ..++..|.+ .+++++.+......    +.. .....      ...+.+++|.+++++
T Consensus        85 ~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~~----~~~-~~~~~~~~~~~~~~e~i~~~~i~ia~  159 (240)
T d1feca1          85 ESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQD----NHT-VLVRESADPNSAVLETLDTEYILLAT  159 (240)
T ss_dssp             GGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEE----TTE-EEEESSSSTTSCEEEEEEEEEEEECC
T ss_pred             cccccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeeccccc----ccc-ccccccccccccceEEEecceEEEec
Confidence               011 1111           112222333 35666655432211    111 11111      112468999999999


Q ss_pred             CCCCCch-----------hhhccccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHH
Q 018416          136 GIRPNTS-----------LFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVA  203 (356)
Q Consensus       136 G~~p~~~-----------l~~~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~  203 (356)
                      |.+|...           |.+.++.+ ++|.|.||++||||.|+|||+|||+..+.          +...|..||+.||+
T Consensus       160 G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~~----------~~~~A~~eg~~aa~  229 (240)
T d1feca1         160 GSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM----------LTPVAINEGAAFVD  229 (240)
T ss_dssp             CEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSCC----------CHHHHHHHHHHHHH
T ss_pred             CCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCcc----------chhhHHHHHHHHHH
Confidence            9988754           22334666 67899999999999999999999987653          46679999999999


Q ss_pred             HHcCCC
Q 018416          204 AIMEPD  209 (356)
Q Consensus       204 ~i~g~~  209 (356)
                      ++++..
T Consensus       230 ~~~~~~  235 (240)
T d1feca1         230 TVFANK  235 (240)
T ss_dssp             HHHSSC
T ss_pred             HHhCCC
Confidence            999865

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.50  E-value=1.2e-13  Score=121.02  Aligned_cols=154  Identities=23%  Similarity=0.313  Sum_probs=100.0

Q ss_pred             cEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCc--------c----------------------------------C-C
Q 018416           41 NAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH--------C----------------------------------M-A   76 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~--------~----------------------------------l-~   76 (356)
                      .++|||+|+.|+.+|..+++.|. +|.+++....        +                                  . .
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c~n~g~ip~k~l~~~a~~~~~~~~~~~~G~~~~~   84 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEFDR   84 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEECCG
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCccccccccccccccccccchhhhhhHHHHHHHHHHHhcCCcccC
Confidence            58999999999999999999886 5788875311        0                                  0 0


Q ss_pred             ccC--CH-H-----------HHHHHHHHH-HhCCCEEEeCCeeeEEEEcCCCcEEEEEeC------CCcEEecCeEEEec
Q 018416           77 RLF--TP-K-----------IASYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLR------DGNRLPTDMVVVGI  135 (356)
Q Consensus        77 ~~~--d~-~-----------~~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~------~g~~i~~D~vi~a~  135 (356)
                      ..+  +. .           ........+ ...||+++.+..-...   . .. ......      ..+.+++|.+++.+
T Consensus        85 ~~~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~vi~g~g~~~~---~-~~-~~~~~~~~~~~~~~~~~~a~~v~i~~  159 (238)
T d1aoga1          85 TTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLES---K-NV-VNVRESADPASAVKERLETEHILLAS  159 (238)
T ss_dssp             GGCEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEESEEEEEE---T-TE-EEEESSSSTTSCEEEEEEBSCEEECC
T ss_pred             ccccccHHHHHHHHHHhhhccccceeeeeecccccEEEEEEeeccc---c-cc-ccccccccccccccccccccceeeec
Confidence            000  10 1           111122333 4678888876432111   1 10 111111      11357788888866


Q ss_pred             CCCCC--------chhh---hcccccccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHH
Q 018416          136 GIRPN--------TSLF---EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA  204 (356)
Q Consensus       136 G~~p~--------~~l~---~~~l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~  204 (356)
                      +.+|.        +..+   ..++..++|+|.||++|||+.|+|||+|||...+.          +...|..+|+.||++
T Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I~vde~~~T~~~~iyAvGDv~~~~~----------l~~~A~~eg~~aa~~  229 (238)
T d1aoga1         160 GSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVM----------LTPVAINEAAALVDT  229 (238)
T ss_dssp             CEEECCCCCEEECCGGGCGGGTTCCEETTEECCCTTCBCSSTTEEECGGGGTSCC----------CHHHHHHHHHHHHHH
T ss_pred             ccccccccccccceeeecccccEEEEcCCeEEecCCeeeccCCEEEEEEecCCcc----------chhhHHHHHHHHHHH
Confidence            65553        3322   23356678999999999999999999999987653          466799999999999


Q ss_pred             HcCCC
Q 018416          205 IMEPD  209 (356)
Q Consensus       205 i~g~~  209 (356)
                      |+|..
T Consensus       230 i~g~~  234 (238)
T d1aoga1         230 VFGTT  234 (238)
T ss_dssp             HHSSS
T ss_pred             HcCCC
Confidence            99865

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.40  E-value=3.6e-12  Score=112.57  Aligned_cols=159  Identities=23%  Similarity=0.272  Sum_probs=112.3

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------------------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-------------------------------------------   77 (356)
                      .|+|||+|+.|+.+|..|++.|.+|+|+|+.+.+..+                                           
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI   83 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence            6999999999999999999999999999987543100                                           


Q ss_pred             ----------------------c-CCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEe
Q 018416           78 ----------------------L-FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  134 (356)
Q Consensus        78 ----------------------~-~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a  134 (356)
                                            . -..++.+.+.+.+++.||+++++++|+++.. +++.+..+.+++|+.+.+|.||+|
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i~a~~vI~A  162 (251)
T d2i0za1          84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIA  162 (251)
T ss_dssp             HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEEC
T ss_pred             HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEE-ECCEEEEEEeCCCCeEecCeEEEc
Confidence                                  0 0023455667778889999999999999987 467777788999999999999999


Q ss_pred             cCCCCCch---------hhhcc-ccc---ccCcEEE-----ecccccCCCCEEEEccccccCccccCcccccccHHHHHH
Q 018416          135 IGIRPNTS---------LFEGQ-LTL---EKGGIKV-----TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK  196 (356)
Q Consensus       135 ~G~~p~~~---------l~~~~-l~~---~~g~I~v-----d~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~  196 (356)
                      +|......         +++.. ...   ....+.+     ++...+..|++|.+|++....... |.    .....|..
T Consensus       163 tGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~-gG----~~~~~a~~  237 (251)
T d2i0za1         163 VGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYT-GG----YNITSALV  237 (251)
T ss_dssp             CCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCT-TT----HHHHHHHH
T ss_pred             cCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCc-ch----HHHHHHHH
Confidence            99654322         33321 111   1111111     122234789999999998654332 22    23467788


Q ss_pred             HHHHHHHHH
Q 018416          197 SAKHAVAAI  205 (356)
Q Consensus       197 ~g~~aa~~i  205 (356)
                      .|+.++..+
T Consensus       238 ~G~~a~~~~  246 (251)
T d2i0za1         238 TGRIAGTTA  246 (251)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888775

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=7.8e-13  Score=105.55  Aligned_cols=117  Identities=20%  Similarity=0.213  Sum_probs=94.4

Q ss_pred             CCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHH
Q 018416            8 FGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA   84 (356)
Q Consensus         8 ~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~   84 (356)
                      +++||.+   ..+|+++.+ .|+..+       ++|+|+|||+|.+++|.|..|++...+||++.|++.+-   .++.+.
T Consensus         1 L~ipge~~~~gkgV~yca~-cD~~~~-------~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~---~~~~~~   69 (126)
T d1trba2           1 LGLPSEEAFKGRGVSACAT-SDGFFY-------RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILI   69 (126)
T ss_dssp             CCCHHHHHTBTTTEESCHH-HHGGGG-------TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHH
T ss_pred             CcCCCHHHhcCCCEEEEEe-cchHHh-------CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc---chhHHH
Confidence            4667754   367876443 244322       68999999999999999999999999999999998742   478888


Q ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC------cEEecCeEEEecC
Q 018416           85 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG------NRLPTDMVVVGIG  136 (356)
Q Consensus        85 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g------~~i~~D~vi~a~G  136 (356)
                      +.+.+..+..+|.+++++.+.++.+ ++..+..+++.|.      +++++|.+++++|
T Consensus        70 ~~~~~~~~~~~i~~~~~~~v~~i~G-~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          70 KRLMDKVENGNIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             HHHHHHHHTSSEEEECSCEEEEEEE-CSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             HHHHHhhcccceeEecceEEEEEEC-CCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            8888888899999999999999998 4555777877553      3599999999987

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=7.9e-12  Score=99.56  Aligned_cols=116  Identities=26%  Similarity=0.384  Sum_probs=88.9

Q ss_pred             ccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416            6 EEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   82 (356)
Q Consensus         6 ~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~   82 (356)
                      +.+++||.+   ..+|+++.+- |+..+       ++|+|+|||+|..++|.|..|++...+||++.|++.+..   ++.
T Consensus         2 R~L~ipge~~~~gkGV~yca~c-D~~~~-------~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~   70 (126)
T d1fl2a2           2 RNMNVPGEDQYRTKGVTYCPHC-DGPLF-------KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQV   70 (126)
T ss_dssp             CCCCCTTTTTTBTTTEESCHHH-HGGGG-------BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHH
T ss_pred             CcCCCCCHHHhcCCCEEEEEec-Chhhc-------CCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---ccc
Confidence            568999986   3678765332 44322       789999999999999999999999999999999987533   444


Q ss_pred             HHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCC---C--cEEecCeEEEecCC
Q 018416           83 IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGI  137 (356)
Q Consensus        83 ~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G~  137 (356)
                      +.    +.+++ .+|+++++++++++.+ +++.+..+++.+   |  +++++|.+++++|.
T Consensus        71 ~~----~~~~~~~~I~v~~~~~v~~i~G-~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          71 LQ----DKLRSLKNVDIILNAQTTEVKG-DGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             HH----HHHHTCTTEEEESSEEEEEEEE-SSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             cc----cccccccceeEEcCcceEEEEc-cccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            33    33443 5699999999999997 345677777743   4  36999999999983

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.27  E-value=3.7e-11  Score=106.66  Aligned_cols=162  Identities=20%  Similarity=0.221  Sum_probs=113.1

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC---------------------------cc--------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------------------RL--------------   78 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~---------------------------~~--------------   78 (356)
                      ..|+|||+|+.|+-+|..|+++|.+|+|+|+.+.+..                           ++              
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccchh
Confidence            5799999999999999999999999999999865420                           00              


Q ss_pred             ----------------------CCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCc-EEEEEeCCCcEEecCeEEEec
Q 018416           79 ----------------------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK-VVAVNLRDGNRLPTDMVVVGI  135 (356)
Q Consensus        79 ----------------------~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~-v~~v~~~~g~~i~~D~vi~a~  135 (356)
                                            -..++.+.+.+.+++.||+++++++|++++..+++. +..+...+++++.||.||+|+
T Consensus        85 ~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAt  164 (253)
T d2gqfa1          85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVAT  164 (253)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECC
T ss_pred             hhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcC
Confidence                                  012355667777888999999999999998755542 333445678899999999999


Q ss_pred             CCCCCch---------hhhcc-ccc------ccCcEEE---e-ccccc-CCCCEEEEccccccCccccCcccccccHHHH
Q 018416          136 GIRPNTS---------LFEGQ-LTL------EKGGIKV---T-GRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSA  194 (356)
Q Consensus       136 G~~p~~~---------l~~~~-l~~------~~g~I~v---d-~~l~t-s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A  194 (356)
                      |-.+...         +++.. +..      ..|++.+   | ..|++ ..|++|.+|.+........|     -..+.|
T Consensus       165 GG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg-----~n~~~a  239 (253)
T d2gqfa1         165 GGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGG-----YNFQWA  239 (253)
T ss_dssp             CCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTT-----HHHHHH
T ss_pred             CcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCC-----Eehhhh
Confidence            9664332         22221 111      2344443   3 24666 68999999988765433222     124567


Q ss_pred             HHHHHHHHHHHc
Q 018416          195 RKSAKHAVAAIM  206 (356)
Q Consensus       195 ~~~g~~aa~~i~  206 (356)
                      ...|..|+..|.
T Consensus       240 ~~s~~~~~~~~~  251 (253)
T d2gqfa1         240 WSSAYACALSIS  251 (253)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHh
Confidence            788888888774

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.26  E-value=4.6e-12  Score=107.58  Aligned_cols=149  Identities=19%  Similarity=0.217  Sum_probs=100.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCccCCc--------cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFD  108 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~l~~--------~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~  108 (356)
                      .+|||+|||||++|+++|..|+++|. +|+|+++++.+...        .............+.+.+.++.....+....
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   82 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE   82 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence            47999999999999999999999998 59999999887431        1345556666667777888888776653211


Q ss_pred             EcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--hc---cccc-ccCcEEEe-cccccCCCCEEEEccccccCccc
Q 018416          109 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG---QLTL-EKGGIKVT-GRLQSSNSSVYAVGDVAAFPLKL  181 (356)
Q Consensus       109 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~---~l~~-~~g~I~vd-~~l~ts~~~VyAiGD~~~~~~~~  181 (356)
                               ..+.+..+..+|.+++++|..+...+.  ..   .... ..+....+ ..++|+.|.||+.||++...+  
T Consensus        83 ---------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~--  151 (196)
T d1gtea4          83 ---------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN--  151 (196)
T ss_dssp             ---------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC--
T ss_pred             ---------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcc--
Confidence                     111223345689999999965433221  11   1111 23444444 458899999999999987543  


Q ss_pred             cCcccccccHHHHHHHHHHHHHHH
Q 018416          182 LGETRRLEHVDSARKSAKHAVAAI  205 (356)
Q Consensus       182 ~g~~~~~~~~~~A~~~g~~aa~~i  205 (356)
                              .+..|..+|+.++..+
T Consensus       152 --------~av~a~~~g~~~a~~v  167 (196)
T d1gtea4         152 --------TTVESVNDGKQASWYI  167 (196)
T ss_dssp             --------CHHHHHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHhhhehhH
Confidence                    2445666777766654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.23  E-value=9.3e-12  Score=111.11  Aligned_cols=102  Identities=9%  Similarity=0.075  Sum_probs=65.4

Q ss_pred             CCEEEeCCeeeEEEEcCCCc----EEEEEe-----CCCcEEecCeEEEecCCCCCch-------------hhhccccc-c
Q 018416           95 GVKFVKGTVLSSFDVDSNGK----VVAVNL-----RDGNRLPTDMVVVGIGIRPNTS-------------LFEGQLTL-E  151 (356)
Q Consensus        95 GV~v~~~~~v~~i~~~~~g~----v~~v~~-----~~g~~i~~D~vi~a~G~~p~~~-------------l~~~~l~~-~  151 (356)
                      +.+++++++|++|+...++.    ...+..     .+++.+++|.||++++..+-..             ........ .
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  322 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY  322 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence            56789999999997643321    112222     2346789999999987421111             00000001 1


Q ss_pred             cCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      ++.+.+++.++|+.|+||++||+...+           .+..|+.+|+.||+.|+.
T Consensus       323 ~~~~~~~~~~~t~~pglf~aGd~~~g~-----------~~~~A~~~G~~aA~~i~~  367 (373)
T d1seza1         323 DSVLDAIDKMEKNLPGLFYAGNHRGGL-----------SVGKALSSGCNAADLVIS  367 (373)
T ss_dssp             HHHHHHHHHHHHHSTTEEECCSSSSCS-----------SHHHHHHHHHHHHHHHHH
T ss_pred             CcEeecccccCCCCCCEEEEecCCCch-----------hHHHHHHHHHHHHHHHHH
Confidence            223445677899999999999998643           367899999999999864

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=4.6e-11  Score=100.73  Aligned_cols=89  Identities=18%  Similarity=0.216  Sum_probs=72.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------cCCHHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------LFTPKIASYYEEYYKSKGVKFVKGTVLSSF  107 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i  107 (356)
                      .+|+|+|||||+.|+++|..|+++|++|||+|+.+.+...          ....++.+.+.+.+++.||++++|+.|++ 
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~-  120 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA-  120 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS-
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc-
Confidence            6799999999999999999999999999999999876321          12346778888899999999999987642 


Q ss_pred             EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416          108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                                    + ....+|.||+|+|..|...
T Consensus       121 --------------~-~~~~~d~vilAtG~~~~~~  140 (179)
T d1ps9a3         121 --------------D-QLQAFDETILASGIPNRAL  140 (179)
T ss_dssp             --------------S-SSCCSSEEEECCCEECCTT
T ss_pred             --------------c-ccccceeEEEeecCCCccc
Confidence                          1 1346899999999887653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.21  E-value=4.3e-11  Score=106.72  Aligned_cols=136  Identities=20%  Similarity=0.296  Sum_probs=86.7

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-----------------------------------CccCC-----
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-----------------------------------ARLFT-----   80 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-----------------------------------~~~~d-----   80 (356)
                      .++|||+|+.|+.+|..++++|.+|.|+|+.. +.                                   .. ++     
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~-~~~~~~~   80 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFS-FNLPLLV   80 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCC-CCHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhh-hhhhhHH
Confidence            48999999999999999999999999999753 11                                   00 11     


Q ss_pred             -------HHHHHHHHHHHHhCCCEEEeCCe-ee-----EEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC-----Cch
Q 018416           81 -------PKIASYYEEYYKSKGVKFVKGTV-LS-----SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP-----NTS  142 (356)
Q Consensus        81 -------~~~~~~~~~~l~~~GV~v~~~~~-v~-----~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p-----~~~  142 (356)
                             ..+...+...|++.||+++.+.. +.     .+...++.........+++++.+|.+++|||.+|     +.+
T Consensus        81 ~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~  160 (259)
T d1onfa1          81 ERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTE  160 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTT
T ss_pred             hhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCcccccccc
Confidence                   11223345667889999998742 11     1111011100011112346799999999999999     333


Q ss_pred             hh---hcccccccCcEEEecccccCCCCEEEEccccccC
Q 018416          143 LF---EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFP  178 (356)
Q Consensus       143 l~---~~~l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~  178 (356)
                      .+   ...+...++.+.+|+..+|++.++|++||++...
T Consensus       161 ~~~l~~~~i~ts~~~~~~d~~~~t~Vig~gaiGdv~~~~  199 (259)
T d1onfa1         161 NLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVK  199 (259)
T ss_dssp             TSSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEEC
T ss_pred             ccccccceeeecccccccccCCceeEeeEEEEEEeeehh
Confidence            22   2224456788999999999999999999998754

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.20  E-value=1.2e-12  Score=104.37  Aligned_cols=96  Identities=17%  Similarity=0.076  Sum_probs=72.6

Q ss_pred             CCCeEEEEecCceEEEeecccceEEEEc-----------cC-----CC-CceEEEEe--eCCeEEEEEEeCCC-H-HHHH
Q 018416          216 YLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------NF-----SG-TTFGAYWV--NKGRLVGSFLEGGT-K-EEYE  274 (356)
Q Consensus       216 ~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~~-----~~-~~~~~~~~--~~g~ilGa~~vg~~-~-~~~~  274 (356)
                      .+.++..++||+.++++|+++.++...|           +.     +. .+|.|+..  ++++|||+|++|++ + +.++
T Consensus         2 ~~gt~~~~vfd~eiasvGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~   81 (126)
T d1nhpa3           2 VQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANIN   81 (126)
T ss_dssp             BCCCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHH
T ss_pred             cccCeEEeEcCccEEEecccHHHHHHCCCCEEEEEEecCcchhhcCCCcceeEEEEEECCCCCEEEEEEEechhHHHHHH
Confidence            4677889999999999999986532111           11     11 23666554  57999999999964 4 4578


Q ss_pred             HHHHHHHcCCCcCcHHHHhhcCCCcccCcCCCCCCCCccc
Q 018416          275 AIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVD  314 (356)
Q Consensus       275 ~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~~~~~~~~~  314 (356)
                      .++.||+.++|++||.+++   +.|+|+|+++-++.+..+
T Consensus        82 ~~~~ai~~~~t~~dL~~~~---~~yhPt~se~~~~l~~aA  118 (126)
T d1nhpa3          82 AISLAIQAKMTIEDLAYAD---FFFQPAFDKPWNIINTAA  118 (126)
T ss_dssp             HHHHHHHTTCBHHHHHTCC---CCCCTTTCCSSCHHHHHH
T ss_pred             HHHHHHHcCCCHHHHhcCc---ccCCCCCchhHHHHHHHH
Confidence            8999999999999999999   999999999866554443

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.18  E-value=4e-11  Score=108.80  Aligned_cols=107  Identities=17%  Similarity=0.147  Sum_probs=65.8

Q ss_pred             HHhCCCEEEeCCeeeEEEEcCCCcEEEEEe--CCCcEEecCeEEEecCC--------CCCchhh-hccccc---ccCcEE
Q 018416           91 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--RDGNRLPTDMVVVGIGI--------RPNTSLF-EGQLTL---EKGGIK  156 (356)
Q Consensus        91 l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~--~~g~~i~~D~vi~a~G~--------~p~~~l~-~~~l~~---~~g~I~  156 (356)
                      +++.|++++++++|++|+.++++....+..  .++++++||.||+|++.        .|..... ...+..   ......
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~~~~  324 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQFQH  324 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTHHHH
T ss_pred             HHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcccccc
Confidence            466789999999999999855543323333  34568999999999863        1221110 111110   000111


Q ss_pred             EecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       157 vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      .++.+.+...+||.+||++..+.         ..+..|+..|..||.+|-
T Consensus       325 ~~~~~~~~~g~v~~aGd~~~~~~---------~~~~~a~~sG~~aA~~i~  365 (370)
T d2iida1         325 FSDPLTASQGRIYFAGEYTAQAH---------GWIDSTIKSGLRAARDVN  365 (370)
T ss_dssp             HHHHHHCCBTTEEECSGGGSSSS---------SCHHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccCCEEEecccccCCC---------cccHHHHHHHHHHHHHHH
Confidence            22334445567999999886543         235679999999998873

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.13  E-value=1.2e-10  Score=93.02  Aligned_cols=117  Identities=15%  Similarity=0.177  Sum_probs=85.7

Q ss_pred             cCCCCCCCC-------CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccC
Q 018416            7 EFGLSGSDA-------ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF   79 (356)
Q Consensus         7 ~~~ipG~~~-------~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~   79 (356)
                      .+++||...       .+|.++-+-+-+..+      .++|+|+|||+|..++|.|..|++...+||+++|++.+-.   
T Consensus         1 ~l~~pGe~E~~~~f~gkGVsyca~CDg~a~~------frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---   71 (130)
T d1vdca2           1 RLSFVGSGEVLGGFWNRGISACAVCDGAAPI------FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---   71 (130)
T ss_dssp             CCCCBTCSSSSSCCBTTTEESCHHHHTTSGG------GTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---
T ss_pred             CCCCCccccccccccCCcEEEEEEecCchHH------hCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---
Confidence            368899653       678765444321111      2689999999999999999999999999999999988643   


Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCC-CcEEEEEeCC---C--cEEecCeEEEec
Q 018416           80 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNLRD---G--NRLPTDMVVVGI  135 (356)
Q Consensus        80 d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-g~v~~v~~~~---g--~~i~~D~vi~a~  135 (356)
                      ++.+.+   +.+...+|++++++++.++.+++. +.+..+++.+   +  +++++|.+++++
T Consensus        72 ~~~~~~---~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          72 SKIMQQ---RALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             CHHHHH---HHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             chhhhh---ccccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            444433   333456799999999999998433 3466665532   3  579999999875

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.08  E-value=1.1e-10  Score=103.97  Aligned_cols=103  Identities=13%  Similarity=0.158  Sum_probs=63.9

Q ss_pred             HhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCchhhhcc-------cc-c-ccCc---EEE
Q 018416           92 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFEGQ-------LT-L-EKGG---IKV  157 (356)
Q Consensus        92 ~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~l~~~~-------l~-~-~~g~---I~v  157 (356)
                      ++.|++++++++|++|+.++++ +..+...++  ++++||.||+|+|......++...       +. . ..+.   +..
T Consensus       230 ~~~g~~i~~~~~V~~I~~~~~~-~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  308 (347)
T d2ivda1         230 ASLGDAAHVGARVEGLAREDGG-WRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHLERVAA  308 (347)
T ss_dssp             HHHGGGEESSEEEEEEECC--C-CEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBTTHHHHHHH
T ss_pred             HHhhcccccCCEEEEEEEeCCe-EEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceecCcccceec
Confidence            4448899999999999874444 322223344  468999999999853222232211       00 0 1111   112


Q ss_pred             ecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          158 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       158 d~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      .+...++.|++|++||.....           ....++.+|+.+|+.|+
T Consensus       309 ~~~~~~~~p~~~~~G~~~~g~-----------~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         309 IDAALQRLPGLHLIGNAYKGV-----------GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             HHHHHHTSTTEEECSTTTSCC-----------SHHHHHHHHHHHHHHHC
T ss_pred             ccccccCCCCEEEecccccCC-----------CHHHHHHHHHHHHHHhh
Confidence            233456899999999986643           24568889999999875

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=3.8e-10  Score=98.61  Aligned_cols=126  Identities=17%  Similarity=0.241  Sum_probs=86.0

Q ss_pred             ccCCCCCCCCCCeEEeCCHHHHHHHHHHHhc----------CCCCcEEEECCchHHHHHHHHHHHC--------------
Q 018416            6 EEFGLSGSDAENVCYLRDLADANRLVNVMKS----------CSGGNAVVIGGGYIGMECAASLVIN--------------   61 (356)
Q Consensus         6 ~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~----------~~~~~vvVvGgG~iGlE~A~~L~~~--------------   61 (356)
                      +.++|||.|++||+.      |..+....+.          ..+++|+|||+|.+++++|..|.+.              
T Consensus         2 R~L~IPGedl~gV~~------A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l   75 (225)
T d1cjca1           2 QALDIPGEELPGVFS------ARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAAL   75 (225)
T ss_dssp             CCCCCTTTTSTTEEE------HHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHH
T ss_pred             CCCCCCCCCCCCcEe------HHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHH
Confidence            578999999999994      4444332221          2479999999999999999999883              


Q ss_pred             ------C-CcEEEEeeCCccCCccCCHHHHHH-----------------------------------HHHHHH-------
Q 018416           62 ------K-INVTMVFPEAHCMARLFTPKIASY-----------------------------------YEEYYK-------   92 (356)
Q Consensus        62 ------G-~~Vtlv~~~~~~l~~~~d~~~~~~-----------------------------------~~~~l~-------   92 (356)
                            | .+|+++.|+...-..+-.+++.+.                                   +.+.++       
T Consensus        76 ~~l~~~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (225)
T d1cjca1          76 GALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEE  155 (225)
T ss_dssp             HHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHhccCCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhcccccc
Confidence                  4 479999998754333222333221                                   111111       


Q ss_pred             -------hCCCEEEeCCeeeEEEEcCCC-cEEEEEeC---------------CC--cEEecCeEEEecCC
Q 018416           93 -------SKGVKFVKGTVLSSFDVDSNG-KVVAVNLR---------------DG--NRLPTDMVVVGIGI  137 (356)
Q Consensus        93 -------~~GV~v~~~~~v~~i~~~~~g-~v~~v~~~---------------~g--~~i~~D~vi~a~G~  137 (356)
                             .+++.+++...+.++..++++ .+..+++.               .|  .+++||+||.|+|+
T Consensus       156 ~~~~~~~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         156 AARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             HHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             cccccccccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence                   246899999999999886654 56555431               12  25899999999995

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.06  E-value=1e-09  Score=100.51  Aligned_cols=163  Identities=20%  Similarity=0.210  Sum_probs=105.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------------------------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------------   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-------------------------------------------   77 (356)
                      .|+|||+|..|+-+|..|++.|.+|+|+|+.+.....                                           
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~  104 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPE  104 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccCHH
Confidence            6999999999999999999999999999986432000                                           


Q ss_pred             --------------------------------------------cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC
Q 018416           78 --------------------------------------------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  113 (356)
Q Consensus        78 --------------------------------------------~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g  113 (356)
                                                                  .....+...+.+.+.++|++++++++++++..+++|
T Consensus       105 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G  184 (322)
T d1d4ca2         105 LVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASG  184 (322)
T ss_dssp             HHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSS
T ss_pred             HhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeecccccccccc
Confidence                                                        001234455566677789999999999999876778


Q ss_pred             cEEEEEeC--CC--cEEecCeEEEecCC-CCCchhhh---------------------------cc--c-ccccCcEE--
Q 018416          114 KVVAVNLR--DG--NRLPTDMVVVGIGI-RPNTSLFE---------------------------GQ--L-TLEKGGIK--  156 (356)
Q Consensus       114 ~v~~v~~~--~g--~~i~~D~vi~a~G~-~p~~~l~~---------------------------~~--l-~~~~g~I~--  156 (356)
                      ++..+...  ++  ..+.++.||+|+|- .-|.++..                           .+  + .++.+++.  
T Consensus       185 ~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~~  264 (322)
T d1d4ca2         185 KVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEMGGLVID  264 (322)
T ss_dssp             CCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHHHTTBCEECTTCCEECCC
T ss_pred             cccceEEEeecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccccccCCCCccCHHHHHHHHcCCcceecccceEEec
Confidence            77766543  23  24899999999983 22222111                           00  0 11223333  


Q ss_pred             -----EecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHc
Q 018416          157 -----VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       157 -----vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~  206 (356)
                           +++..+|.+|++||+|+|+...+   |..+.- ..+..+.--|++|+.+..
T Consensus       265 ~~~~~~~~~~~~~v~Glya~Ge~~~gvh---G~nrlg~~~~~e~~v~g~~ag~~aa  317 (322)
T d1d4ca2         265 TKAEVKSEKTGKPITGLYAAGEVTGGVH---GANRLGGNAISDIVTYGRIAGASAA  317 (322)
T ss_dssp             TTCEEEBTTTSSEEEEEEECGGGBCSSS---TTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCEeCceEEchhhcCCcc---ccccchhhHHHHHHHHHHHHHHHHH
Confidence                 34455678899999999985322   222111 123444555666666553

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.04  E-value=6.3e-11  Score=102.99  Aligned_cols=101  Identities=16%  Similarity=0.226  Sum_probs=66.5

Q ss_pred             CEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC----------Cchhhh-cccccccCcEEEe----cc
Q 018416           96 VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP----------NTSLFE-GQLTLEKGGIKVT----GR  160 (356)
Q Consensus        96 V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p----------~~~l~~-~~l~~~~g~I~vd----~~  160 (356)
                      ..+..++.+..+...+++  ..+++.+|+.+++|.+++++....          ...-.. ..+. ..+...++    +.
T Consensus       225 ~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~-~~~~~~~~~~~~~~  301 (347)
T d1b5qa1         225 PRLQLNKVVREIKYSPGG--VTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIY-QFWPVGVNRYEYDQ  301 (347)
T ss_dssp             TTEESSCCEEEEEECSSC--EEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHH-HSCBTTCCHHHHHH
T ss_pred             cccccccccccccccCcc--EEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHH-hcCCccccccchhh
Confidence            457778888888764333  458889999999999999876321          110000 0000 11222222    45


Q ss_pred             cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416          161 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  207 (356)
Q Consensus       161 l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  207 (356)
                      ++++.++||++||++....+        ..++.|+.+|+.+|+.|++
T Consensus       302 ~~~~~~~v~~~GD~~~~~~~--------~~~~gA~~sG~~aA~~l~~  340 (347)
T d1b5qa1         302 LRAPVGRVYFTGEHTSEHYN--------GYVHGAYLSGIDSAEILIN  340 (347)
T ss_dssp             HHCCBTTEEECSGGGCSSCT--------TSHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCEEEEEccccCcCC--------CHHHHHHHHHHHHHHHHHH
Confidence            67889999999999875433        3466789999999998864

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.03  E-value=1e-09  Score=89.98  Aligned_cols=94  Identities=27%  Similarity=0.408  Sum_probs=68.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  116 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~  116 (356)
                      .+++|||||||.+|+|+|..+.++|.+ |++++|++..-.. ..+..    ...+...+++++.+..++++.. +++.+.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~-a~~~~----~~~a~~~~~~~~~~~~~~ei~~-~~~~~~  117 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVPEE----VELAKEEKCEFLPFLSPRKVIV-KGGRIV  117 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCHHH----HHHHHHTTCEEECSEEEEEEEE-ETTEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhc-cchhh----eeecccccceeEeccccEEEEe-cCCceE
Confidence            357899999999999999999999875 8899998764333 23322    2344567899999998888876 345444


Q ss_pred             EEEe------CCC---------cEEecCeEEEecCC
Q 018416          117 AVNL------RDG---------NRLPTDMVVVGIGI  137 (356)
Q Consensus       117 ~v~~------~~g---------~~i~~D~vi~a~G~  137 (356)
                      .+..      ++|         .+++||.||+|+|.
T Consensus       118 ~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         118 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            3332      122         35899999999983

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.90  E-value=1.2e-08  Score=92.27  Aligned_cols=102  Identities=18%  Similarity=0.233  Sum_probs=75.5

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------------------------------------cCCH-
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------LFTP-   81 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------------------------------------~~d~-   81 (356)
                      .|+|||+|+.|+-+|..|++.|.+|+|||+.+.....                                      ..++ 
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~   97 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPA   97 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccchH
Confidence            6999999999999999999999999999987432100                                      0011 


Q ss_pred             ------------------------------------------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC
Q 018416           82 ------------------------------------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  113 (356)
Q Consensus        82 ------------------------------------------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g  113 (356)
                                                                      .+...+.+.+++.|+++++++.++++..+++|
T Consensus        98 lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G  177 (308)
T d1y0pa2          98 LVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG  177 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS
T ss_pred             HHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhccc
Confidence                                                            12333445566789999999999998876778


Q ss_pred             cEEEEEeCC--C--cEEecCeEEEecC-CCCCch
Q 018416          114 KVVAVNLRD--G--NRLPTDMVVVGIG-IRPNTS  142 (356)
Q Consensus       114 ~v~~v~~~~--g--~~i~~D~vi~a~G-~~p~~~  142 (356)
                      ++..+...+  +  ..+.++.||+|+| +..|.+
T Consensus       178 ~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~  211 (308)
T d1y0pa2         178 TVKGILVKGMYKGYYWVKADAVILATGGFAKNNE  211 (308)
T ss_dssp             CEEEEEEEETTTEEEEEECSEEEECCCCCTTCHH
T ss_pred             ccccccccccccceeEeecCeEEEccCcccccHH
Confidence            888776643  3  2588999999998 444443

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.88  E-value=2e-08  Score=91.59  Aligned_cols=97  Identities=18%  Similarity=0.220  Sum_probs=74.4

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------------------------------------cC---
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------LF---   79 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------------------------------------~~---   79 (356)
                      .|+|||+|..|+-+|..+++.|.+|.|+++.+..-..                                      ..   
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~~  100 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIK  100 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccchh
Confidence            4999999999999999999999999999986432000                                      00   


Q ss_pred             ----------------------------------------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC
Q 018416           80 ----------------------------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  113 (356)
Q Consensus        80 ----------------------------------------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g  113 (356)
                                                                    ...+...+.+.+++.|+++++++.++++..++++
T Consensus       101 lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g  180 (317)
T d1qo8a2         101 LVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH  180 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS
T ss_pred             HHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeecccc
Confidence                                                          1234455667778899999999999998776788


Q ss_pred             cEEEEEeC--CCc--EEecCeEEEecCC
Q 018416          114 KVVAVNLR--DGN--RLPTDMVVVGIGI  137 (356)
Q Consensus       114 ~v~~v~~~--~g~--~i~~D~vi~a~G~  137 (356)
                      ++..+...  +++  .+.++.||+|+|-
T Consensus       181 ~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         181 SVVGAVVHGKHTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             BEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred             cceeeEeecccceEEEEeccceEEeccc
Confidence            88766553  343  4789999999983

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.87  E-value=2.4e-08  Score=90.57  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=81.8

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------------c--CCHHH
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------L--FTPKI   83 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------~--~d~~~   83 (356)
                      -+|+|||+|++|+-+|..|.+.|.+|+++|+.+.+...                                  .  -.+++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~   87 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   87 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence            36999999999999999999999999999997654110                                  0  02467


Q ss_pred             HHHHHHHHHhCCC--EEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC--CCCch
Q 018416           84 ASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI--RPNTS  142 (356)
Q Consensus        84 ~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~--~p~~~  142 (356)
                      .+.+++..++.++  .++++++|++++-+++...=.|++.++++.++|.||+|+|.  .|...
T Consensus        88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p  150 (298)
T d1w4xa1          88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTG  150 (298)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTH
T ss_pred             HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCC
Confidence            7888888888898  59999999999854444434688889999999999999995  44443

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.86  E-value=2.7e-09  Score=92.41  Aligned_cols=62  Identities=27%  Similarity=0.365  Sum_probs=47.6

Q ss_pred             ccCCCCCCCCCCeEEeCCHHHHHHHHHHHhc----------CCCCcEEEECCchHHHHHHHHHH----------------
Q 018416            6 EEFGLSGSDAENVCYLRDLADANRLVNVMKS----------CSGGNAVVIGGGYIGMECAASLV----------------   59 (356)
Q Consensus         6 ~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~----------~~~~~vvVvGgG~iGlE~A~~L~----------------   59 (356)
                      +.++|||.|++||+.      |..+....+.          ..+++|+|||+|.+++++|..|.                
T Consensus         2 R~L~IPGedl~gV~~------A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l   75 (216)
T d1lqta1           2 RMLNIPGEDLPGSIA------AVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHAL   75 (216)
T ss_dssp             CCCCCTTTTSTTEEE------HHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHH
T ss_pred             CCCCCCCCCCCCcEe------HHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHH
Confidence            578999999999994      4444433321          14799999999999999999887                


Q ss_pred             ----HCCC-cEEEEeeCCc
Q 018416           60 ----INKI-NVTMVFPEAH   73 (356)
Q Consensus        60 ----~~G~-~Vtlv~~~~~   73 (356)
                          +.|. +|+++.|+..
T Consensus        76 ~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          76 ESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             HHHTTCCCCEEEEECSSCG
T ss_pred             HHHhhcCCceEEEEEECCh
Confidence                4555 6999988754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.81  E-value=2e-08  Score=92.24  Aligned_cols=160  Identities=17%  Similarity=0.106  Sum_probs=98.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccCCc---------------------------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMAR---------------------------------------   77 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l~~---------------------------------------   77 (356)
                      -|+|+|||||++|+-+|..|++.|  .+|+++|+++.+...                                       
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            489999999999999999998876  599999999765200                                       


Q ss_pred             ------------------------cC--CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe-CCCc---EEe
Q 018416           78 ------------------------LF--TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN---RLP  127 (356)
Q Consensus        78 ------------------------~~--d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~-~~g~---~i~  127 (356)
                                              .+  -.++.+.+....+..+..++++++|++++.+++...+.+.. +.++   +..
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~  163 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDI  163 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEE
T ss_pred             hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEE
Confidence                                    00  13566677777677788999999999998844332222222 2222   356


Q ss_pred             cCeEEEecCC--CCCchhhh-----c--cccc------ccCcEEEecccc---cCCCCEEEEccccccCccccCcccccc
Q 018416          128 TDMVVVGIGI--RPNTSLFE-----G--QLTL------EKGGIKVTGRLQ---SSNSSVYAVGDVAAFPLKLLGETRRLE  189 (356)
Q Consensus       128 ~D~vi~a~G~--~p~~~l~~-----~--~l~~------~~g~I~vd~~l~---ts~~~VyAiGD~~~~~~~~~g~~~~~~  189 (356)
                      +|.||+|+|.  .|+.....     .  .+..      .++.-..+-+..   ...|.+..+|=....           .
T Consensus       164 ~d~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~~v-----------~  232 (335)
T d2gv8a1         164 FDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV-----------V  232 (335)
T ss_dssp             ESEEEECCCSSSSBCCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSS-----------C
T ss_pred             eeEEEEcccccccceecccccCCCCcchhcccCccceeccccceeeeecccccCCCCceEEeeeEEEE-----------e
Confidence            9999999995  34432110     0  0111      111111111222   246777777743332           1


Q ss_pred             cHHHHHHHHHHHHHHHcCCC
Q 018416          190 HVDSARKSAKHAVAAIMEPD  209 (356)
Q Consensus       190 ~~~~A~~~g~~aa~~i~g~~  209 (356)
                      .......|+..++.-+.|..
T Consensus       233 ~~~~~e~Qa~~~a~~~~g~~  252 (335)
T d2gv8a1         233 PFPTSQAQAAFLARVWSGRL  252 (335)
T ss_dssp             HHHHHHHHHHHHHHHHTTSS
T ss_pred             cCCchHHHHHHHHHHHcCCc
Confidence            23345668888888777653

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.78  E-value=4.6e-08  Score=85.77  Aligned_cols=103  Identities=17%  Similarity=0.282  Sum_probs=76.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----CCHHHHHHH-------------------------
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FTPKIASYY-------------------------   87 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-----~d~~~~~~~-------------------------   87 (356)
                      ..+||+|||+|+.|+-+|..|++.|++|+|+|+.+.+....     +.+...+.+                         
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   82 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence            46899999999999999999999999999999976643220     222222111                         


Q ss_pred             -------------------HHHH-HhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416           88 -------------------EEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus        88 -------------------~~~l-~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                                         ...+ ...++.++.++.+++++..+++  ..+++.||+++++|++|.|.|..+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~dG~~~~~d~~v~adG~~s~~r  155 (265)
T d2voua1          83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASVVR  155 (265)
T ss_dssp             CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCHHH
T ss_pred             ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc--eEEEECCCCEEEEEEEecccccccccc
Confidence                               1111 2346778999999999874444  468899999999999999999765443

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.6e-08  Score=89.45  Aligned_cols=106  Identities=15%  Similarity=0.154  Sum_probs=66.3

Q ss_pred             HHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC--------CCch-hhhccccc--ccCcE-EEe
Q 018416           91 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR--------PNTS-LFEGQLTL--EKGGI-KVT  158 (356)
Q Consensus        91 l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~--------p~~~-l~~~~l~~--~~g~I-~vd  158 (356)
                      +++.|++++++++|++|..+++ . ..+++.||+++++|.||++++..        |... .....+..  ..+.. ...
T Consensus       217 ~~~~g~~i~~~~~v~~I~~~~~-~-v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~  294 (383)
T d2v5za1         217 MDLLGDRVKLERPVIYIDQTRE-N-VLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILTQYG  294 (383)
T ss_dssp             HHHHGGGEEESCCEEEEECSSS-S-EEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHHHHG
T ss_pred             HHHcCCeEEecCcceEEEecCC-e-EEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCccchhh
Confidence            4556889999999999986433 3 45889999999999999998732        1111 11111110  11111 112


Q ss_pred             cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      ..+.....+|+.+|+.......        .....|+.+|+.+|..++
T Consensus       295 ~~~~~~~~~~~~~G~~~~~~~~--------g~~~ga~~~g~~~a~~i~  334 (383)
T d2v5za1         295 RVLRQPVDRIYFAGTETATHWS--------GYMEGAVEAGERAAREIL  334 (383)
T ss_dssp             GGTTCCBTTEEECSGGGCSSST--------TSHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCcCceEeccccccccCC--------cchHHHHHHHHHHHHHHH
Confidence            2334456679999987654322        345668889999888765

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.72  E-value=1.6e-07  Score=85.58  Aligned_cols=120  Identities=13%  Similarity=0.121  Sum_probs=73.9

Q ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe---CCCc--EEecCeEEEecCCCCC-----------c-h-h---
Q 018416           85 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIRPN-----------T-S-L---  143 (356)
Q Consensus        85 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~vi~a~G~~p~-----------~-~-l---  143 (356)
                      ..+.+..++.||+++.++.+.++.. +++++..+..   .+|+  .+.++.||+|+|--..           + + +   
T Consensus       162 ~~l~~~~~~~gv~i~~~~~~~~li~-~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~~~  240 (336)
T d2bs2a2         162 FAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIA  240 (336)
T ss_dssp             HHHHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHHHH
T ss_pred             HHHHHHHHhccccccceeeeeeccc-ccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhhhh
Confidence            3344555667999999999988876 4666554433   4564  4789999999983321           1 0 1   


Q ss_pred             hhcc-ccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          144 FEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       144 ~~~~-l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      +..+ ... +-++|.+|+.++|+.|++|++||+........+. .--.....+...+..+++.++
T Consensus       241 ~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~~-~~~~~~~e~~~~~~~~ge~~~  304 (336)
T d2bs2a2         241 LETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNR-LGGNSVSEAVVAGMIVGEYFA  304 (336)
T ss_dssp             HTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTCC-CTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccceeechhhcccCCcceecccccccccccccc-chhhccchhhhhcchhHHHHH
Confidence            1112 223 5678999999999999999999987643211100 001123445555555555543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.69  E-value=6.1e-08  Score=87.25  Aligned_cols=54  Identities=28%  Similarity=0.445  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                      ...+.+.+++.|++++.+++|++++. +++++..|++++| +++||.||+|+|...
T Consensus       151 ~~~l~~~a~~~gv~i~~~~~V~~i~~-~~~~v~~V~T~~g-~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         151 VQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG  204 (305)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             hhhHHhhhhcccccccCCceEEEEEE-eCCEEEEEeccce-eEECCEEEEecchhH
Confidence            34455667788999999999999987 5677777887766 799999999999653

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.64  E-value=1.2e-08  Score=80.78  Aligned_cols=85  Identities=12%  Similarity=0.118  Sum_probs=62.2

Q ss_pred             CCCeEEEEecCceEEEeecccceEEEE-----------c-------cCCCCceEEEEe--eCCeEEEEEEeCCCHHHH-H
Q 018416          216 YLPFFYSRVFTLSWQFYGDNVGEVVHY-----------G-------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-E  274 (356)
Q Consensus       216 ~~p~~~~~~~~~~~~~~G~~~~~~~~~-----------g-------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~-~  274 (356)
                      .+|+.+  +.+..++++|+++.++...           .       ..+..+|.++..  ++|+|||++++|+++.++ +
T Consensus         3 ~IP~~v--ft~PeiA~VGlte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG~~A~ElI~   80 (128)
T d1ojta3           3 VIPGVA--YTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIG   80 (128)
T ss_dssp             CCCEEE--CSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHH
T ss_pred             cCCEee--cCCCceeeeeccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEhhhHHHHHH
Confidence            578644  5677899999987643111           1       112245777654  579999999999987775 6


Q ss_pred             HHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          275 AIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       275 ~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      .++.||++++|++||.++.   .. +|++++.
T Consensus        81 ~~~lai~~~~t~~~l~~~i---~~-hPT~sE~  108 (128)
T d1ojta3          81 EVCLAIEMGCDAADIGKTI---HP-HPTLGES  108 (128)
T ss_dssp             HHHHHHHTTCBHHHHHTSC---CC-SSSSTTH
T ss_pred             HHHHHHHcCCCHHHHhhCc---Cc-CCCHHHH
Confidence            7899999999999999988   44 4888775

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=1.2e-08  Score=80.19  Aligned_cols=87  Identities=16%  Similarity=0.210  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHHH
Q 018416          214 FDYLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY  273 (356)
Q Consensus       214 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~  273 (356)
                      |+.+|+.  -+.+..++++|++++++...+                  ..+..+|.++..  ++|+|||++++|+++.++
T Consensus         1 Y~~iP~~--vft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~ivG~~A~el   78 (123)
T d1v59a3           1 YNNIPSV--MYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEM   78 (123)
T ss_dssp             TTSCCEE--ECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCCCCEE--eecCCccEEEECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEEchHHHHH
Confidence            4567854  346778999999875431111                  112245777654  579999999999998775


Q ss_pred             -HHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          274 -EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       274 -~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                       +.++.||++++|++||.++.    ..+|.+++.
T Consensus        79 I~~~alai~~~~t~~~l~~~i----~~hPT~sE~  108 (123)
T d1v59a3          79 IAEAGLALEYGASAEDVARVC----HAHPTLSEA  108 (123)
T ss_dssp             HHHHHHHHHTTCBHHHHHTSC----CCTTCTTHH
T ss_pred             HHHHHHHHHcCCcHHHHHhcc----cCCCcHHHH
Confidence             67899999999999998876    445776654

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.60  E-value=4.6e-07  Score=67.80  Aligned_cols=83  Identities=20%  Similarity=0.324  Sum_probs=66.0

Q ss_pred             CCCCCCCeEEEEecCceEEEeecccc--eEEE-EccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCc
Q 018416          212 DKFDYLPFFYSRVFTLSWQFYGDNVG--EVVH-YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVED  288 (356)
Q Consensus       212 ~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~-~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~d  288 (356)
                      .+|..+||||+.+|+.+++++|....  +.+. .+..+...|..++.++|+++|+..+|. +.++.....+|+.+.+++ 
T Consensus         3 ~~y~~vP~FWSdQ~d~~iq~~G~~~~~~~~v~~~~~~~~~~f~~~y~~~g~lvgv~~vn~-~~~~~~~rrli~~~~~~~-   80 (97)
T d1d7ya3           3 PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVNN-ARDFAPLRRLLAVGAKPD-   80 (97)
T ss_dssp             CCCCCCCEEEEEETTEEEEEEECSCCSEEEEEEECCSSSCEEEEEEEETTEEEEEEEESC-HHHHHHHHHHHHTTCCCC-
T ss_pred             CCCCCCCcEEeccCCCeeEEEecCCCCCEEEEeccCCCCCeEEEEEEeCCEEEEEEEeCC-HHHHHHHHHHHHCCCCCC-
Confidence            47889999999999999999998664  3333 344445568899999999999999994 778888899999998874 


Q ss_pred             HHHHhhcC
Q 018416          289 LAELETQG  296 (356)
Q Consensus       289 l~~l~~~~  296 (356)
                      ...|.++.
T Consensus        81 ~~~LaD~~   88 (97)
T d1d7ya3          81 RAALADPA   88 (97)
T ss_dssp             HHHHHSSC
T ss_pred             HHHhcCCC
Confidence            66666443

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.58  E-value=1.7e-08  Score=79.32  Aligned_cols=87  Identities=15%  Similarity=0.119  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHHH
Q 018416          214 FDYLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY  273 (356)
Q Consensus       214 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~  273 (356)
                      |+.+|+.  -+.+..++++|+++.++...|                  ..+..+|.|+..  ++|+|+|++++|+.+.++
T Consensus         1 Y~~iP~~--vft~PeiA~vGlte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~ivG~~A~el   78 (123)
T d1dxla3           1 YDKVPGV--VYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGEL   78 (123)
T ss_dssp             TTSCCEE--ECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCCCCEE--eecCCceEEEECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEehhhHHHH
Confidence            4567854  345778999999875432111                  122345777664  579999999999987765


Q ss_pred             -HHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          274 -EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       274 -~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                       +.++.||++++|++||.++.    ..+|++++.
T Consensus        79 I~~~~~ai~~~~t~~~l~~~i----~~hPT~sE~  108 (123)
T d1dxla3          79 IHEAAIALQYDASSEDIARVC----HAHPTMSEA  108 (123)
T ss_dssp             HHHHHHHHHTTCBHHHHHTSC----CCSSCTTHH
T ss_pred             HHHHHHHHHcCCcHHHHhhCC----CCCCCHHHH
Confidence             67899999999999998876    344766653

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.58  E-value=1.9e-07  Score=82.94  Aligned_cols=54  Identities=22%  Similarity=0.437  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                      +...+.+.++++|++++++++|++++.. ++.+ .|.+++| ++.||.||+|+|.-.
T Consensus       152 ~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v-~V~t~~g-~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         152 CIRAYRELAEARGAKVLTHTRVEDFDIS-PDSV-KIETANG-SYTADKLIVSMGAWN  205 (281)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEC-SSCE-EEEETTE-EEEEEEEEECCGGGH
T ss_pred             cccccccccccccccccCCcEEEEEEEE-CCEE-EEEECCc-EEEcCEEEECCCCcc
Confidence            3344566778899999999999999874 4443 5777776 699999999999543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.57  E-value=1.3e-07  Score=83.47  Aligned_cols=53  Identities=19%  Similarity=0.281  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416           84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  139 (356)
                      ...+.+.++++|++++.+++|++++.  ++....|++++| ++.||.||+|+|.-.
T Consensus       154 ~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~t~~g-~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         154 CKAYVKAAKMLGAEIFEHTPVLHVER--DGEALFIKTPSG-DVWANHVVVASGVWS  206 (276)
T ss_dssp             HHHHHHHHHHTTCEEETTCCCCEEEC--SSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             hhHHHHHHHHcCCEEecceEEEeEEe--ecceEEEecCCe-EEEcCEEEECCCccH
Confidence            34456677889999999999999985  344467887776 799999999999654

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.56  E-value=6.3e-07  Score=67.81  Aligned_cols=81  Identities=14%  Similarity=0.277  Sum_probs=66.6

Q ss_pred             CCCCCCeEEEEecCceEEEeeccc--ceEEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHH
Q 018416          213 KFDYLPFFYSRVFTLSWQFYGDNV--GEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLA  290 (356)
Q Consensus       213 ~~~~~p~~~~~~~~~~~~~~G~~~--~~~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~  290 (356)
                      .+..+||||+++|+.+++++|...  .+.+..|+.+..+|..++.++|+++|+..+| .+.++.....+|..+..++ ..
T Consensus         3 ~~~~vP~FWSdQ~d~~lQ~~G~~~~~d~~v~rg~~~~~~f~~~y~~~~~lvav~~vn-~~~~~~~~r~li~~~~~~~-~~   80 (103)
T d1q1ra3           3 RDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDTVN-RPVEFNQSKQIITDRLPVE-PN   80 (103)
T ss_dssp             CCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHTTCCCC-HH
T ss_pred             CCCCCCcEeeecCCCeeEEEECCCCCceEEEecCCCCCeEEEEEEeCCeEEEEEEeC-CHHHHHHHHHHHHCCCCcC-HH
Confidence            455799999999999999999865  3667778777777999999999999999999 4777888899999998774 55


Q ss_pred             HHhhc
Q 018416          291 ELETQ  295 (356)
Q Consensus       291 ~l~~~  295 (356)
                      .|.++
T Consensus        81 ~L~D~   85 (103)
T d1q1ra3          81 LLGDE   85 (103)
T ss_dssp             HHTCT
T ss_pred             HhcCC
Confidence            55533

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.7e-08  Score=77.27  Aligned_cols=87  Identities=14%  Similarity=0.163  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEEE-----------E--c-------cCCCCceEEEEe--eCCeEEEEEEeCCCHH
Q 018416          214 FDYLPFFYSRVFTLSWQFYGDNVGEVVH-----------Y--G-------NFSGTTFGAYWV--NKGRLVGSFLEGGTKE  271 (356)
Q Consensus       214 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~-----------~--g-------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~  271 (356)
                      |..+|+.+  +.+..++++|++++++..           .  .       ..+..+|.++..  ++++|||++++|+.+.
T Consensus         1 Y~~vP~~v--ft~PeiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~ivG~~A~   78 (115)
T d3grsa3           1 YNNIPTVV--FSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCD   78 (115)
T ss_dssp             CTTCCEEE--CCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred             CCCCCEEe--cCcCccEEEecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEEEeccCHH
Confidence            45688643  456678999998754311           1  1       011234766554  6899999999999988


Q ss_pred             HH-HHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          272 EY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       272 ~~-~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      ++ ..++.+|++++|++||.++.    ..+|.++++
T Consensus        79 ElI~~~~~ai~~~~t~~~l~~~i----~~hPT~sE~  110 (115)
T d3grsa3          79 EMLQGFAVAVKMGATKADFDNTV----AIHPTSSEE  110 (115)
T ss_dssp             HHHHHHHHHHHTTCBHHHHHTSC----CCSSCSGGG
T ss_pred             HHHHHHHHHHHcCCCHHHHhhCc----cCCCCHHHH
Confidence            76 56799999999999998876    556777665

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.54  E-value=1.7e-08  Score=79.44  Aligned_cols=87  Identities=17%  Similarity=0.140  Sum_probs=61.9

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEE---------EEc---------cCCCCceEEEEe--eCCeEEEEEEeCCCHHHH
Q 018416          214 FDYLPFFYSRVFTLSWQFYGDNVGEVV---------HYG---------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY  273 (356)
Q Consensus       214 ~~~~p~~~~~~~~~~~~~~G~~~~~~~---------~~g---------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~  273 (356)
                      |+.+|+.  .+.+..++++|+++.++.         ...         ..+..+|.|+..  ++|+|||++++|+++.++
T Consensus         1 Y~~vP~~--vft~PeiA~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~ivg~~A~el   78 (124)
T d3lada3           1 YDLIPAV--IYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAEL   78 (124)
T ss_dssp             TTCCCEE--ECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCcCCeE--ecCcCceeEeehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEEcccHHHH
Confidence            4567854  345677999999875431         111         122345777665  679999999999987775


Q ss_pred             -HHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          274 -EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       274 -~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                       +.++.+|++++|++||.++.    ..+|.+++.
T Consensus        79 I~~~~~ai~~~~t~~~l~~~i----~~hPT~sE~  108 (124)
T d3lada3          79 VQQGAIAMEFGTSAEDLGMMV----FAHPALSEA  108 (124)
T ss_dssp             HHHHHHHHHHTCBHHHHHTSC----CCSSCSHHH
T ss_pred             HHHHHHHHHcCCCHHHHHhCC----ccCCCHHHH
Confidence             67899999999999998866    345777654

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=3e-08  Score=77.00  Aligned_cols=87  Identities=10%  Similarity=0.062  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEEE--------E-----cc-------CCCCceEEEEe--eCCeEEEEEEeCCCHH
Q 018416          214 FDYLPFFYSRVFTLSWQFYGDNVGEVVH--------Y-----GN-------FSGTTFGAYWV--NKGRLVGSFLEGGTKE  271 (356)
Q Consensus       214 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~--------~-----g~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~  271 (356)
                      |+.+|+.+  +.+..++.+|++++++..        .     ..       .+..+|.++..  ++++|||++++|+++.
T Consensus         1 Y~~vP~~v--ft~PeiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~ivG~~A~   78 (115)
T d1gesa3           1 YSNIPTVV--FSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMD   78 (115)
T ss_dssp             CSSCCEEE--CCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred             CCCCCeEe--cCCCccEEEeCCHHHHHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEEEECCCHH
Confidence            45688643  456678999998654311        1     10       11124666554  5899999999999988


Q ss_pred             HH-HHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          272 EY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       272 ~~-~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      ++ +.++.+|+++.|++||.++.    ..+|.++++
T Consensus        79 ElI~~~~~ai~~~~t~~~l~~~i----~~hPT~sE~  110 (115)
T d1gesa3          79 EMLQGFAVALKMGATKKDFDNTV----AIHPTAAEE  110 (115)
T ss_dssp             HHHHHHHHHHHTTCBHHHHHTSC----CCSSCSGGG
T ss_pred             HHHHHHHHHHHcCCcHHHHhcCc----ccCCcHHHH
Confidence            75 56799999999999998866    556777765

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.52  E-value=3.6e-08  Score=77.00  Aligned_cols=87  Identities=13%  Similarity=0.169  Sum_probs=60.7

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEEE-------------Ecc-----------CCCCceEEEE--eeCCeEEEEEEeC
Q 018416          214 FDYLPFFYSRVFTLSWQFYGDNVGEVVH-------------YGN-----------FSGTTFGAYW--VNKGRLVGSFLEG  267 (356)
Q Consensus       214 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~-------------~g~-----------~~~~~~~~~~--~~~g~ilGa~~vg  267 (356)
                      |+.+|+.+  +.+..++.+|+++.++..             ...           ....+|.++.  .++|+|||++++|
T Consensus         1 Y~~vP~~v--fT~PeiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~IlGa~ivG   78 (119)
T d1onfa3           1 YKLIPTVI--FSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIG   78 (119)
T ss_dssp             CSSCCEEE--CCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEES
T ss_pred             CCcCCeEe--ccCCccEEEECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEEEEecCCCcEEEEEEeC
Confidence            45688654  355678999998754311             110           0112455543  3789999999999


Q ss_pred             CCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          268 GTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       268 ~~~~~~-~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      +.+.++ +.++.||++++|++||.++.    ..+|.++++
T Consensus        79 ~~A~ElI~~~~~ai~~~~t~~~l~~~i----~~hPT~sE~  114 (119)
T d1onfa3          79 LNADEIVQGFAVALKMNATKKDFDETI----PIHPTAAEE  114 (119)
T ss_dssp             TTHHHHHHHHHHHHHTTCBHHHHHTSC----CCTTCSTTH
T ss_pred             CCHHHHHHHHHHHHHcCCcHHHHhhCc----ccCCCHHHH
Confidence            998876 56799999999999998876    456777664

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.52  E-value=2.2e-08  Score=78.68  Aligned_cols=85  Identities=14%  Similarity=0.062  Sum_probs=60.6

Q ss_pred             CCCeEEEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HH
Q 018416          216 YLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YE  274 (356)
Q Consensus       216 ~~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~  274 (356)
                      .+|+.  -+.+..++++|+++.++...|                  ..+..+|.++..  ++|+|||++++|+.+.+ ++
T Consensus         3 ~iP~v--vft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~~A~elI~   80 (123)
T d1lvla3           3 AIAAV--CFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELST   80 (123)
T ss_dssp             CCCEE--ECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHH
T ss_pred             CCCEE--EeCCCccEEEECCHHHHhhcchhhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeCchhhHHH
Confidence            46753  345677999999875432111                  112235766554  57999999999998766 56


Q ss_pred             HHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          275 AIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       275 ~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      .++.+|++++|++||.++.    ...|+++++
T Consensus        81 ~~~lai~~~~t~~~l~~~i----~~hPT~sE~  108 (123)
T d1lvla3          81 AFAQSLEMGACLEDVAGTI----HAHPTLGEA  108 (123)
T ss_dssp             HHHHHHHHTCBHHHHHTSC----CCTTCTTHH
T ss_pred             HHHHHHHcCCCHHHHhcCC----CCCCCHHHH
Confidence            7899999999999999877    344887764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.52  E-value=1.1e-06  Score=77.04  Aligned_cols=157  Identities=17%  Similarity=0.131  Sum_probs=98.1

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCccCCcc----CCHHHHHH---------------------------
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARL----FTPKIASY---------------------------   86 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~l~~~----~d~~~~~~---------------------------   86 (356)
                      |-+|+|||||+.|+-+|..|++.|. +|+|+|+.+.+....    +.+...+.                           
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g   80 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   80 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCC
Confidence            3479999999999999999999996 899999987653210    11111111                           


Q ss_pred             -----------------------------HH--HHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC----cEEecCeE
Q 018416           87 -----------------------------YE--EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMV  131 (356)
Q Consensus        87 -----------------------------~~--~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~v  131 (356)
                                                   ..  ..-...++.+..+++++.+..++++  ..+.+.++    +++.+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~~~ad~v  158 (288)
T d3c96a1          81 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGR--VLIGARDGHGKPQALGADVL  158 (288)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTE--EEEEEEETTSCEEEEEESEE
T ss_pred             CEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCc--EEEEEEcCCCCeEEEeecee
Confidence                                         11  1123357888999999888764444  24555544    46999999


Q ss_pred             EEecCCCCCchhhhcccccccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416          132 VVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  206 (356)
Q Consensus       132 i~a~G~~p~~~l~~~~l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  206 (356)
                      +.|-|....+.-....  .  ...............+..+||++....+..|+     ....|+..+...+..+.
T Consensus       159 i~ADG~~S~vr~~~~~--~--~~~~~~~~~~~~~~~~~~~gda~h~~~p~~g~-----G~~~ai~d~~~l~~~l~  224 (288)
T d3c96a1         159 VGADGIHSAVRAHLHP--D--QRPLRDPLPHWGRGRITLLGDAAHLMYPMGAN-----GASQAILDGIELAAALA  224 (288)
T ss_dssp             EECCCTTCHHHHHHCT--T--CCCCCCCCSCCCBTTEEECTHHHHCCCSSTTC-----THHHHHHHHHHHHHHHH
T ss_pred             eccCCccceeeeeecc--c--cccccccccccccCcceecccccceeCCcccc-----chhhhhhhHHHHHHHHh
Confidence            9999976543211110  0  00000111223456799999999876654443     24456777777666654

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.51  E-value=3.2e-08  Score=76.77  Aligned_cols=84  Identities=14%  Similarity=0.075  Sum_probs=59.8

Q ss_pred             CCeEEEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHHH-HH
Q 018416          217 LPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EA  275 (356)
Q Consensus       217 ~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~-~~  275 (356)
                      +|+  .-+.+..++++|+++.++...|                  ..+..+|.|+..  ++|+|||++++|+++.++ +.
T Consensus         2 vP~--~vft~PeiA~VGlte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~~A~elI~~   79 (115)
T d1ebda3           2 IPA--VVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAE   79 (115)
T ss_dssp             CCE--EECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHH
T ss_pred             cCe--EecCCCceEEEeCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcCCHHHHHHH
Confidence            564  3345677999999876432111                  112345777554  579999999999987765 67


Q ss_pred             HHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          276 IAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       276 ~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      ++.+|++++|++||.++.   . .+|+++++
T Consensus        80 ~~~ai~~~~t~~~l~~~i---~-~hPT~sE~  106 (115)
T d1ebda3          80 LGLAIEAGMTAEDIALTI---H-AHPTLGEI  106 (115)
T ss_dssp             HHHHHHHTCBHHHHHHSC---C-CTTSSTHH
T ss_pred             HHHHHHcCCCHHHHhhCC---C-CCCCHHHH
Confidence            899999999999999877   3 34777653

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=1.8e-08  Score=78.56  Aligned_cols=85  Identities=14%  Similarity=0.025  Sum_probs=60.3

Q ss_pred             CCCeEEEEecCceEEEeecccceEE------EEc------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHHH-H
Q 018416          216 YLPFFYSRVFTLSWQFYGDNVGEVV------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-E  274 (356)
Q Consensus       216 ~~p~~~~~~~~~~~~~~G~~~~~~~------~~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~-~  274 (356)
                      .+|+.+  +.+..++++|+++.++.      ..+            ..+..+|.++..  ++|+|+|++++|+++.++ +
T Consensus         3 ~iP~~v--ft~PeiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG~~A~elI~   80 (118)
T d1xdia2           3 TVAATV--FTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELIL   80 (118)
T ss_dssp             GCEEEE--CSSSEEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred             CCCEEe--cCCChheeehhhHHHHHhCcccceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEcCcHHHHHH
Confidence            466533  56778999999875431      111            111235777665  579999999999987765 6


Q ss_pred             HHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          275 AIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       275 ~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      .++.||+.++|++||.++.   .. +|++++.
T Consensus        81 ~~~~ai~~~~t~~~l~~~i---~~-hPT~sE~  108 (118)
T d1xdia2          81 PIAVAVQNRITVNELAQTL---AV-YPSLSGS  108 (118)
T ss_dssp             HHHHHHHHTCBHHHHHTSB---CC-SSSTHHH
T ss_pred             HHHHHHHcCCCHHHHhhCC---CC-CCCHHHH
Confidence            7899999999999998877   33 4777654

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.49  E-value=3.4e-07  Score=79.25  Aligned_cols=95  Identities=15%  Similarity=0.258  Sum_probs=69.0

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC-cc---------CC---c----cCC------HHHHHHHHHHHHh-CCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA-HC---------MA---R----LFT------PKIASYYEEYYKS-KGV   96 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~-~~---------l~---~----~~d------~~~~~~~~~~l~~-~GV   96 (356)
                      .|+|||||+.|+|.|...+|.|.+|.||+... .+         ..   .    ..|      ......+++.+++ .++
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            58999999999999999999999999998641 11         00   0    001      1122334444443 588


Q ss_pred             EEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416           97 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  137 (356)
Q Consensus        97 ~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  137 (356)
                      +++.+ .|.++.. +++.+..|.+.+|.++.+..||+++|.
T Consensus        84 ~i~q~-~V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGT  122 (230)
T d2cula1          84 HLFQA-TATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGS  122 (230)
T ss_dssp             EEEEC-CEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred             HHHhc-cceeeEe-cccceeeEEeccccEEEEeEEEEccCc
Confidence            88865 4566654 567788899999999999999999995

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.48  E-value=2.6e-06  Score=79.35  Aligned_cols=160  Identities=21%  Similarity=0.278  Sum_probs=108.5

Q ss_pred             cEEEECCchHHHHHHHHHHH------CCCcEEEEeeCCccCCcc-----CC-----------------------------
Q 018416           41 NAVVIGGGYIGMECAASLVI------NKINVTMVFPEAHCMARL-----FT-----------------------------   80 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~------~G~~Vtlv~~~~~~l~~~-----~d-----------------------------   80 (356)
                      .|+|||||+.|+-+|..|++      .|.+|.|+|++..+..+.     ++                             
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~~  113 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGI  113 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceEEE
Confidence            79999999999999999997      899999999985442110     11                             


Q ss_pred             ---------------------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-----------
Q 018416           81 ---------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-----------  122 (356)
Q Consensus        81 ---------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-----------  122 (356)
                                                 ......+.+..++.|+++..+..+.++..++++.+..+...+           
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  193 (380)
T d2gmha1         114 LTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKT  193 (380)
T ss_dssp             ECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEE
T ss_pred             eeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccc
Confidence                                       123445566777889999999999998876666655444321           


Q ss_pred             ----CcEEecCeEEEecCCCCCch--hhhcc-ccc---ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHH
Q 018416          123 ----GNRLPTDMVVVGIGIRPNTS--LFEGQ-LTL---EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD  192 (356)
Q Consensus       123 ----g~~i~~D~vi~a~G~~p~~~--l~~~~-l~~---~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~  192 (356)
                          +....++..+++.|.+....  +.... +..   ..+++  ...-+...|++..+||++..-++.++     ..+.
T Consensus       194 ~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~--~sip~l~~~G~lLVGDAAG~vnP~~g-----~GI~  266 (380)
T d2gmha1         194 TFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGF--QSIPKLTFPGGLLIGCSPGFMNVPKI-----KGTH  266 (380)
T ss_dssp             EEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGG--GGCCCCEETTEEECTTTTCCCBTTTT-----BCHH
T ss_pred             cccccccccccEEEEeeeCCCcchHHHHhhhhhcccccccccc--ccccccccCCeeEEeccccccchhhc-----CCee
Confidence                12456888899999765432  22211 111   11111  00112346899999999998777654     4577


Q ss_pred             HHHHHHHHHHHHHcC
Q 018416          193 SARKSAKHAVAAIME  207 (356)
Q Consensus       193 ~A~~~g~~aa~~i~g  207 (356)
                      .|+..|+.||+.+..
T Consensus       267 ~Am~SG~lAAeai~~  281 (380)
T d2gmha1         267 TAMKSGTLAAESIFN  281 (380)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             eeeccHHHHHHHHHH
Confidence            899999999988763

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.45  E-value=5.9e-08  Score=76.69  Aligned_cols=87  Identities=9%  Similarity=0.109  Sum_probs=61.1

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEE---------E--Ecc-------CCCC-ceEEEEe--eCCeEEEEEEeCCCHHH
Q 018416          214 FDYLPFFYSRVFTLSWQFYGDNVGEVV---------H--YGN-------FSGT-TFGAYWV--NKGRLVGSFLEGGTKEE  272 (356)
Q Consensus       214 ~~~~p~~~~~~~~~~~~~~G~~~~~~~---------~--~g~-------~~~~-~~~~~~~--~~g~ilGa~~vg~~~~~  272 (356)
                      |..+|+.+  +.+..++.+|+++.++.         .  +..       .+.. ++.++..  ++|+|||++++|+++.+
T Consensus         1 y~~VP~aV--fT~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~ivG~~A~E   78 (128)
T d1feca3           1 HTKVACAV--FSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPE   78 (128)
T ss_dssp             CSSCCEEE--CCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHH
T ss_pred             CCCCCEEe--cCCCcceEEECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEEECCCHHH
Confidence            34678654  45667899999875421         1  110       1122 3555553  68999999999999877


Q ss_pred             H-HHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          273 Y-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       273 ~-~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      + ..++.+|+.++|++||.++.    ..+|++++.
T Consensus        79 lI~~~~~ai~~~~t~~~l~~~i----~~hPT~sE~  109 (128)
T d1feca3          79 IIQSVAICLKMGAKISDFYNTI----GVHPTSAEE  109 (128)
T ss_dssp             HHHHHHHHHHTTCBHHHHHTSC----CCSSCSGGG
T ss_pred             HHHHHHHHHHcCCcHHHHhcCc----CCCCcHHHH
Confidence            5 66899999999999998876    445777776

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=6.7e-07  Score=76.17  Aligned_cols=53  Identities=13%  Similarity=0.172  Sum_probs=39.7

Q ss_pred             HHHHHHhCCCEEEeCCeeeEEEEcCC-CcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416           87 YEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus        87 ~~~~l~~~GV~v~~~~~v~~i~~~~~-g~v~~v~~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      +.+.++++|++++++++|++|..+++ +++..+ +.+|+++.||.||.....-|+
T Consensus       242 l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v-~~~g~~~~ad~VI~~~s~~~~  295 (297)
T d2bcgg1         242 FARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPTYFPE  295 (297)
T ss_dssp             HHHHHHHTTCEEECSCCCCEEEEETTTTEEEEE-EETTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEE-EcCCEEEECCEEEEChhhccC
Confidence            45567788999999999999975444 455444 568899999999986554443

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.43  E-value=8.5e-08  Score=82.91  Aligned_cols=127  Identities=16%  Similarity=0.182  Sum_probs=79.3

Q ss_pred             cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCC-------c--cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416           41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMA-------R--LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~-------~--~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  109 (356)
                      +|+|||+|+.|+.+|..|++.  |++||++++.+.+..       .  .....+.......+++.|++++.++.+..   
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---   79 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR---   79 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT---
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc---
Confidence            899999999999999999875  789999999987631       1  12334556667778889999998877521   


Q ss_pred             cCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhccccc-ccCcEEEecccc-cCCCCEEEEccccccC
Q 018416          110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQ-SSNSSVYAVGDVAAFP  178 (356)
Q Consensus       110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~I~vd~~l~-ts~~~VyAiGD~~~~~  178 (356)
                        +-..  .++    .-.+|.+++++|..+........... ....+......+ .+.+..+..|+.....
T Consensus        80 --~~~~--~~l----~~~~d~v~~a~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  142 (230)
T d1cjca2          80 --DVTV--QEL----QDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGP  142 (230)
T ss_dssp             --TBCH--HHH----HHHSSEEEECCCCCEECCCCCTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCT
T ss_pred             --cccH--HHH----HhhhceEEEEeecccccccccccccccccccccccccceeecccccccccccccCc
Confidence              1000  001    12589999999986544322221111 111122221122 2467788888765543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.39  E-value=1.5e-07  Score=71.87  Aligned_cols=76  Identities=17%  Similarity=0.216  Sum_probs=57.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+|+|+|||+|.+|+++|..|++.+.+|+++.+++.....               ..++...  ..+.+++.  ++.  .
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------------~~~~~~~--~~i~~~~~--~~~--~   89 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------------NESLQQV--PEITKFDP--TTR--E   89 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB---------------CSSEEEE--CCEEEEET--TTT--E
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc---------------cccceec--CCeeEEec--CCC--E
Confidence            7899999999999999999999999998888777654332               1233333  34666654  332  4


Q ss_pred             EEeCCCcEEe-cCeEEEe
Q 018416          118 VNLRDGNRLP-TDMVVVG  134 (356)
Q Consensus       118 v~~~~g~~i~-~D~vi~a  134 (356)
                      +.+.||+.+. .|.||+|
T Consensus        90 v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          90 IYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EEETTTEEECCCSEEEEC
T ss_pred             EEEcCCCEEeCCCEEEEC
Confidence            7889999886 6999987

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=1.7e-07  Score=74.46  Aligned_cols=87  Identities=16%  Similarity=0.167  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEEE-----------Ecc---------CC-CCceE-EEEe--eCCeEEEEEEeCCC
Q 018416          214 FDYLPFFYSRVFTLSWQFYGDNVGEVVH-----------YGN---------FS-GTTFG-AYWV--NKGRLVGSFLEGGT  269 (356)
Q Consensus       214 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~-----------~g~---------~~-~~~~~-~~~~--~~g~ilGa~~vg~~  269 (356)
                      |+.+|+.+  +.+..++++|+++.++..           ...         .+ ..++. ++..  ++|+|||++++|+.
T Consensus         1 Y~~VP~~v--fT~PeiA~VGlte~eA~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ILGa~ivg~~   78 (133)
T d1h6va3           1 YDNVPTTV--FTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPN   78 (133)
T ss_dssp             CSSCCEEE--CSSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTCEEEEEEEEGGGTTEEEEEEEESTT
T ss_pred             CCCCCEEe--cCcchheeEeCCHHHHHHhccccccchheeccchhhhhhhhhcccccceEEEEEecCcccEEEEEEeCCC
Confidence            45688644  456778999998754321           110         01 12233 3332  58999999999999


Q ss_pred             HHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416          270 KEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  306 (356)
Q Consensus       270 ~~~~-~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  306 (356)
                      +.++ ..++.||++++|++||.++.    ..+|.++++
T Consensus        79 A~ElI~~~~~ai~~~~t~~~l~~~i----~~hPT~sE~  112 (133)
T d1h6va3          79 AGEVTQGFAAALKCGLTKQQLDSTI----GIHPVCAEI  112 (133)
T ss_dssp             HHHHHHHHHHHHHTTCBHHHHHHSC----CCTTCGGGG
T ss_pred             HHHHHHHHHHHHHcCCCHHHHhhcc----ccCCCHHHH
Confidence            8876 56799999999999999876    555666664

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.32  E-value=1.4e-07  Score=75.68  Aligned_cols=85  Identities=14%  Similarity=0.152  Sum_probs=60.0

Q ss_pred             CCCeEEEEecCceEEEeecccceEEEEcc----------------------------------CCCCceEEEEe--eCCe
Q 018416          216 YLPFFYSRVFTLSWQFYGDNVGEVVHYGN----------------------------------FSGTTFGAYWV--NKGR  259 (356)
Q Consensus       216 ~~p~~~~~~~~~~~~~~G~~~~~~~~~g~----------------------------------~~~~~~~~~~~--~~g~  259 (356)
                      .+|+++  +.+..++++|+++.++...|.                                  .+..+|.|+..  ++|+
T Consensus         3 ~iP~vv--fT~PeiA~VGlTe~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~vKlv~d~~t~~   80 (140)
T d1mo9a3           3 NYPDFL--HTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRK   80 (140)
T ss_dssp             SCCEEE--ESSSEEEEEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCB
T ss_pred             CCCcEe--ccCCccEEEECCHHHHHHcCCCeEEEEEeecccccceeeeeeccchhhhhhhhhcCCCCceEEEEEecCCCc
Confidence            467654  456789999999865421110                                  01123667655  6899


Q ss_pred             EEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCc-ccCcCC
Q 018416          260 LVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGF-ALAVSQ  305 (356)
Q Consensus       260 ilGa~~vg~~~~~~-~~~a~ai~~~~~~~dl~~l~~~~~~y-ap~~~~  305 (356)
                      |||++++|+.+.++ +.++.+|++++|++||.++.   ..| +|.|++
T Consensus        81 IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~---~i~~hPT~~~  125 (140)
T d1mo9a3          81 VLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMD---ELFLNPTHFI  125 (140)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSC---CCSSCSCCHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcC---CCCCCCChHH
Confidence            99999999987765 67899999999999998876   444 466654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.31  E-value=4.3e-08  Score=85.35  Aligned_cols=95  Identities=17%  Similarity=0.169  Sum_probs=60.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccC----------CHHHHHHHHHHHHh---CCCEEEeCCee
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF----------TPKIASYYEEYYKS---KGVKFVKGTVL  104 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~----------d~~~~~~~~~~l~~---~GV~v~~~~~v  104 (356)
                      .+++|+|||||+.|+.+|..|+++|.+|+++++.+++.....          -..........+.+   .+++..     
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  122 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQ-----  122 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTCE-----
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcceeee-----
Confidence            578999999999999999999999999999999988743210          01122223333333   222211     


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchh
Q 018416          105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL  143 (356)
Q Consensus       105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l  143 (356)
                        +.. ...   .+...+..++.+|.+|+|+|..+....
T Consensus       123 --~~~-~~~---~~~~~~~~~~~~d~vviAtG~~~~~~~  155 (233)
T d1djqa3         123 --LAL-GQK---PMTADDVLQYGADKVIIATGASECTLW  155 (233)
T ss_dssp             --EEC-SCC---CCCHHHHHTSCCSEEEECCCEECCHHH
T ss_pred             --eec-ccc---cccchhhhhhccceeeeccCCCccccc
Confidence              111 111   112223346789999999998877654

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.8e-06  Score=77.57  Aligned_cols=86  Identities=16%  Similarity=0.276  Sum_probs=57.8

Q ss_pred             HHhCCCEEEeCCeeeEEEEcCC------CcEEEEEe---CCCc--EEecCeEEEecCCCCC-----------c-h---hh
Q 018416           91 YKSKGVKFVKGTVLSSFDVDSN------GKVVAVNL---RDGN--RLPTDMVVVGIGIRPN-----------T-S---LF  144 (356)
Q Consensus        91 l~~~GV~v~~~~~v~~i~~~~~------g~v~~v~~---~~g~--~i~~D~vi~a~G~~p~-----------~-~---l~  144 (356)
                      +++.+++++.++.++++..+++      +++..+..   .+++  .+.++.||+|+|--..           + +   ++
T Consensus       148 ~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~~mA  227 (305)
T d1chua2         148 LNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMA  227 (305)
T ss_dssp             HHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHHHH
T ss_pred             HhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccEeec
Confidence            3455778888888888765322      24555544   2343  4789999999984221           1 0   11


Q ss_pred             -hccccc-ccCcEEEecccccCCCCEEEEccccc
Q 018416          145 -EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAA  176 (356)
Q Consensus       145 -~~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~  176 (356)
                       +.+..+ +-++|.+|++.+|+.|++||+|+++.
T Consensus       228 ~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~  261 (305)
T d1chua2         228 WRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSY  261 (305)
T ss_dssp             HHTTCCEECSCEEECCTTCBCSSBTEEECGGGEE
T ss_pred             cccceeeEecceeEECCcccCCCCCceecccEEE
Confidence             223444 56789999999999999999999754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.27  E-value=1.8e-06  Score=76.65  Aligned_cols=128  Identities=15%  Similarity=0.135  Sum_probs=82.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC------ccCC---------------------------------
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------RLFT---------------------------------   80 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~------~~~d---------------------------------   80 (356)
                      .+|+|||||+.|+-+|..|++.|++|+|+|+.+....      ..+.                                 
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~   82 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence            3799999999999999999999999999999863210      0011                                 


Q ss_pred             --------------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCC
Q 018416           81 --------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIR  138 (356)
Q Consensus        81 --------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~  138 (356)
                                          ..+.+.+.+.+++.+..++.+.........++..+......+|+  ++.+|+||-|.|.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~  162 (292)
T d1k0ia1          83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFH  162 (292)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTT
T ss_pred             ccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCC
Confidence                                22444455666677777777766555543333333322234554  57899999999977


Q ss_pred             CCchhhhcccccccCcEEEecccccCCCCEEEEccccccCcc
Q 018416          139 PNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLK  180 (356)
Q Consensus       139 p~~~l~~~~l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~  180 (356)
                      ....-.   +..          -.......+.+||+.....+
T Consensus       163 S~vR~~---i~~----------~~~~~~~~~~~~~~~~~~~p  191 (292)
T d1k0ia1         163 GISRQS---IPA----------ERMQHGRLFLAGDAAHIVPP  191 (292)
T ss_dssp             CSTGGG---SCG----------GGSEETTEEECGGGTEECCG
T ss_pred             Ccccce---eee----------ccccccccccceeeeeecCC
Confidence            543311   110          11134567888998765444

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.16  E-value=3.8e-07  Score=82.64  Aligned_cols=37  Identities=16%  Similarity=0.355  Sum_probs=33.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCcc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHC   74 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~   74 (356)
                      ....|+|||+|+.|+.+|..|+++  |.+|+++++.+.+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            456899999999999999999964  9999999998765

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=7e-06  Score=74.11  Aligned_cols=87  Identities=20%  Similarity=0.346  Sum_probs=60.8

Q ss_pred             HHHhCCCEEEeCCeeeEEEEcCCCcEEEEE---eCCCc--EEecCeEEEecCC-----CCCc--h--------hh-hccc
Q 018416           90 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGN--RLPTDMVVVGIGI-----RPNT--S--------LF-EGQL  148 (356)
Q Consensus        90 ~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~---~~~g~--~i~~D~vi~a~G~-----~p~~--~--------l~-~~~l  148 (356)
                      ..+..+|+++.++.++++.. +++++..+.   ..+|+  .+.++.||+|+|-     ..++  .        ++ +.+.
T Consensus       144 ~~~~~~v~i~~~~~v~~Ll~-d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aGa  222 (311)
T d1kf6a2         144 SLQFPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGV  222 (311)
T ss_dssp             HTTCTTEEEEETEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTC
T ss_pred             HHccCcceeEeeeEeeeeEe-cCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhccc
Confidence            33445899999999999976 567776554   34564  4689999999983     2111  1        11 1223


Q ss_pred             cc-ccCcEEEecccccCCCCEEEEcccccc
Q 018416          149 TL-EKGGIKVTGRLQSSNSSVYAVGDVAAF  177 (356)
Q Consensus       149 ~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~  177 (356)
                      .+ +-.+|.++++..++.+++|+.|++...
T Consensus       223 ~l~dme~iq~~p~~~~~~~~~~~~~~~~~~  252 (311)
T d1kf6a2         223 PLRDMGGIETDQNCETRIKGLFAVGECSSV  252 (311)
T ss_dssp             CEESCCEEECCTTSBCSSBTEEECGGGEEC
T ss_pred             ceeecccccccccchhcccCCCcCcceeee
Confidence            33 456788888888999999999998763

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.10  E-value=2e-06  Score=73.63  Aligned_cols=63  Identities=14%  Similarity=0.174  Sum_probs=45.2

Q ss_pred             CccCCCCCCC-CCC-eEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416            5 LEEFGLSGSD-AEN-VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus         5 p~~~~ipG~~-~~~-v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      |+.+.+||.| -++ +++-..++.     + -....+|+|+|||+|.+|+++|..+++.+.+++++.+.+.
T Consensus         2 P~iP~~pG~e~F~G~v~HS~~~~~-----~-~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2           2 PQLPNFPGLKDFAGNLYHTGNWPH-----E-PVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             CCCCCCTTGGGCCSEEEEGGGCCS-----S-CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCCCCCChhhCCCcEEecCcCCC-----C-CCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            7888999976 233 332221210     0 0123789999999999999999999999999988877653

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=6e-05  Score=68.18  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .|+|||+|+.|+-+|..+++.|.+|+|+++.+
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            59999999999999999999999999999864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=2.8e-06  Score=72.94  Aligned_cols=92  Identities=16%  Similarity=0.136  Sum_probs=67.2

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCC-------CcEEEEeeCCccCC-------c--cCCHHHHHHHHHHHHhCCCEEEeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINK-------INVTMVFPEAHCMA-------R--LFTPKIASYYEEYYKSKGVKFVKGT  102 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G-------~~Vtlv~~~~~~l~-------~--~~d~~~~~~~~~~l~~~GV~v~~~~  102 (356)
                      |.+|+|||+|+.|+.+|..|+++|       ++|||+|+.+.+..       +  ....++.+.....+.+.|+++++++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            679999999999999999999987       47999999986532       1  1234556666777888999999997


Q ss_pred             eeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416          103 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  141 (356)
Q Consensus       103 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  141 (356)
                      .+...     .     .+ +.-...+|.+++++|..+..
T Consensus        82 ~v~~~-----~-----~~-~~~~~~~~~v~~atGa~~~~  109 (239)
T d1lqta2          82 VVGEH-----V-----QP-GELSERYDAVIYAVGAQSRG  109 (239)
T ss_dssp             CBTTT-----B-----CH-HHHHHHSSEEEECCCCCEEC
T ss_pred             Eeccc-----c-----ch-hhhhccccceeeecCCCccc
Confidence            65221     0     00 11124689999999976543

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.78  E-value=8.5e-05  Score=65.39  Aligned_cols=101  Identities=17%  Similarity=0.208  Sum_probs=69.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHH-CCCcEEEEeeCCccCCcc-----------C---C----------------------
Q 018416           38 SGGNAVVIGGGYIGMECAASLVI-NKINVTMVFPEAHCMARL-----------F---T----------------------   80 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~-~G~~Vtlv~~~~~~l~~~-----------~---d----------------------   80 (356)
                      ....|+|||+|+.|+.+|..|++ .|.+|+++|+++.+....           +   .                      
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  111 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH  111 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecc
Confidence            35679999999999999999987 599999999987542110           0   0                      


Q ss_pred             --HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe--------------CCCcEEecCeEEEecCCCC
Q 018416           81 --PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--------------RDGNRLPTDMVVVGIGIRP  139 (356)
Q Consensus        81 --~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~--------------~~g~~i~~D~vi~a~G~~p  139 (356)
                        ......+.+.++..++.+..++.+..+.. +++++..+..              .++..+.++.++.++|...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         112 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeCCcceeeee-cCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCc
Confidence              01223334455667888888888877765 3444443321              1235688999999999654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.8e-05  Score=69.89  Aligned_cols=39  Identities=23%  Similarity=0.387  Sum_probs=35.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      +..+|+|||+|..|+-+|..|++.|++|+|+|+++++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG   42 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence            457899999999999999999999999999999987743

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.51  E-value=3.8e-05  Score=69.29  Aligned_cols=39  Identities=15%  Similarity=0.285  Sum_probs=36.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      .|+|+|||||++|+-+|..|++.|.+|+|+|+++++...
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~   40 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN   40 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCe
Confidence            589999999999999999999999999999999988653

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.51  E-value=0.0013  Score=59.11  Aligned_cols=33  Identities=30%  Similarity=0.498  Sum_probs=28.5

Q ss_pred             CcEEEECCchHHHHHHHHHHH----CCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVI----NKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~----~G~~Vtlv~~~~   72 (356)
                      -.|+|||+|+.|+-+|..+++    .|.+|.|+++.+
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            369999999999999888865    699999999864

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.48  E-value=4.4e-05  Score=65.49  Aligned_cols=35  Identities=29%  Similarity=0.411  Sum_probs=32.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..++|+|||+|.+|+-+|..|+++|.+|+|+|+..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45789999999999999999999999999999863

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.19  E-value=0.00021  Score=56.51  Aligned_cols=110  Identities=15%  Similarity=0.102  Sum_probs=72.8

Q ss_pred             CCHHHHHHHHHHHhcCC-CCcEEEEC------CchHHHHHH----HHHHHCCC--cEEEEeeCCccCC-ccCCHHHHHHH
Q 018416           22 RDLADANRLVNVMKSCS-GGNAVVIG------GGYIGMECA----ASLVINKI--NVTMVFPEAHCMA-RLFTPKIASYY   87 (356)
Q Consensus        22 ~~~~da~~i~~~l~~~~-~~~vvVvG------gG~iGlE~A----~~L~~~G~--~Vtlv~~~~~~l~-~~~d~~~~~~~   87 (356)
                      ....++.++++.|++.+ +.++|+.-      ++....|+|    ..|+++|.  +|.++...+.... ..+.+.+.+.+
T Consensus        15 ~~~~~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~   94 (141)
T d1fcda2          15 KAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLY   94 (141)
T ss_dssp             SCSHHHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHH
Confidence            45578999999998864 55776642      344555554    44566665  5777765544211 11335567777


Q ss_pred             HHHHHhCCCEEEeCCe--eeEEEEcCCCcEEEEEeCCCcEEecCeEEEec
Q 018416           88 EEYYKSKGVKFVKGTV--LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  135 (356)
Q Consensus        88 ~~~l~~~GV~v~~~~~--v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  135 (356)
                      .+.+++.||+++++..  +.+++.  ..  ..+++.+|+++++|++.+..
T Consensus        95 ~~~~~~~~I~~~~~~~~~~v~vd~--~~--~~~~~~~Ge~v~yD~l~vvP  140 (141)
T d1fcda2          95 GFGTENAMIEWHPGPDSAVVKVDG--GE--MMVETAFGDEFKADVINLIP  140 (141)
T ss_dssp             CSTTSSCSEEEECSSTTCEEEEEE--TT--TEEEETTCCEEECSEEEECC
T ss_pred             HHHHHhcCceeeecCCceEEeecC--Cc--EEEEeCCCcEEeeeEEEeCC
Confidence            7778899999998765  556554  22  24678899999999998753

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00014  Score=64.84  Aligned_cols=37  Identities=22%  Similarity=0.389  Sum_probs=34.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   77 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~   77 (356)
                      .++|||||++|+-+|..|++.|.+|+|+|+++++...
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~   39 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN   39 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence            5899999999999999999999999999999988664

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.01  E-value=0.0023  Score=52.32  Aligned_cols=124  Identities=19%  Similarity=0.231  Sum_probs=71.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeC--CeeeEEEEcCCCcE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG--TVLSSFDVDSNGKV  115 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~--~~v~~i~~~~~g~v  115 (356)
                      +|-+|+|+|+|..|+..+....++|.+|++++.++.-             .+++++.+-+++.-  ......+. ..+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~-------------~~~l~~l~~~~i~~~~~~~~~~~~-~~gyA   93 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT-------------KEQVESLGGKFITVDDEAMKTAET-AGGYA   93 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT-------------HHHHHHTTCEECCC----------------
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHH-------------HHHHHHhhcceEEEeccccccccc-cccch
Confidence            6789999999999999999999999999999887642             34566666655521  01111111 11110


Q ss_pred             EEE--EeCCC-------cEEecCeEEEec---CCCCCchhhhccccc-ccCcEEEe------cccccCCCC-EEEEcccc
Q 018416          116 VAV--NLRDG-------NRLPTDMVVVGI---GIRPNTSLFEGQLTL-EKGGIKVT------GRLQSSNSS-VYAVGDVA  175 (356)
Q Consensus       116 ~~v--~~~~g-------~~i~~D~vi~a~---G~~p~~~l~~~~l~~-~~g~I~vd------~~l~ts~~~-VyAiGD~~  175 (356)
                      ..+  ++...       ..-++|.||-+.   |.++..-+-++.+.. ..|.+.||      ..++|+.|+ +|..-++.
T Consensus        94 ~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~Ets~~~~~~~~~gV~  173 (183)
T d1l7da1          94 KEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVK  173 (183)
T ss_dssp             --------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEE
T ss_pred             hhcCHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCccccCcCCCEEEECCEE
Confidence            000  01010       013589998653   444433333344554 78999998      246676664 66665554

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=96.99  E-value=0.00022  Score=63.91  Aligned_cols=47  Identities=13%  Similarity=0.203  Sum_probs=36.8

Q ss_pred             cEEEECCchHHHHHHHHHH-----HCCCcEEEEeeCCccCCc----cCCHHHHHHH
Q 018416           41 NAVVIGGGYIGMECAASLV-----INKINVTMVFPEAHCMAR----LFTPKIASYY   87 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~-----~~G~~Vtlv~~~~~~l~~----~~d~~~~~~~   87 (356)
                      .|+|||||++|+-+|..|+     +.|++|+|+|+.+.+...    .+.+...+.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L   64 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESL   64 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHH
Confidence            6999999999999999996     579999999998776432    2556554433

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00036  Score=55.56  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=32.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .+|+++|||||.+|++-|..|.+.|.+||++.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999999999999999999999999654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.64  E-value=0.0025  Score=47.88  Aligned_cols=90  Identities=13%  Similarity=0.154  Sum_probs=57.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      .+|+++|||+|.+|..-|..|.+.|.+|+++.+.       ..+++.    ...++.+++++...               
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~-------~~~~~~----~~~~~~~i~~~~~~---------------   64 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT-------FIPQFT----VWANEGMLTLVEGP---------------   64 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS-------CCHHHH----HHHTTTSCEEEESS---------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc-------CChHHH----HHHhcCCceeeccC---------------
Confidence            6899999999999999999999999999999754       344443    33344556554321               


Q ss_pred             EEeCCCcEEecCeEEEecCCCCCchhhhcccc-cccCcEEEe
Q 018416          118 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLT-LEKGGIKVT  158 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~-~~~g~I~vd  158 (356)
                        +.+.....+++|+.+++-..-..   .... ....+|.||
T Consensus        65 --~~~~dl~~~~lv~~at~d~~~n~---~i~~~a~~~~ilVN  101 (113)
T d1pjqa1          65 --FDETLLDSCWLAIAATDDDTVNQ---RVSDAAESRRIFCN  101 (113)
T ss_dssp             --CCGGGGTTCSEEEECCSCHHHHH---HHHHHHHHTTCEEE
T ss_pred             --CCHHHhCCCcEEeecCCCHHHHH---HHHHHHHHcCCEEE
Confidence              11122234788888887543221   1111 245567776

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.0012  Score=47.93  Aligned_cols=81  Identities=19%  Similarity=0.310  Sum_probs=56.4

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEE
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  116 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~  116 (356)
                      .++|+++|+|.|-+|+.+|..|.++|.+|++.+..+..-..           +.+ +.++.++++..             
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-----------~~~-~~~~~~~~~~~-------------   57 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----------DKL-PEAVERHTGSL-------------   57 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTG-----------GGS-CTTSCEEESBC-------------
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhH-----------HHH-hhccceeeccc-------------
Confidence            36899999999999999999999999999999986542211           111 22344332210             


Q ss_pred             EEEeCCCcEEecCeEEEecCCCCCchhhhc
Q 018416          117 AVNLRDGNRLPTDMVVVGIGIRPNTSLFEG  146 (356)
Q Consensus       117 ~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~  146 (356)
                          .+...-.+|.+++++|..|+..+++.
T Consensus        58 ----~~~~~~~~d~vi~SPGi~~~~~~~~~   83 (93)
T d2jfga1          58 ----NDEWLMAADLIVASPGIALAHPSLSA   83 (93)
T ss_dssp             ----CHHHHHHCSEEEECTTSCTTSHHHHH
T ss_pred             ----chhhhccCCEEEECCCCCCCCHHHHH
Confidence                01112357999999999998887654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.52  E-value=0.00088  Score=53.96  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=31.9

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .|+|+|||+|.+|.-+|..|.+.|++||+++|..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            5899999999999999999999999999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00081  Score=55.86  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=34.2

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      -|+|.|||+|.+|..+|..+++.|++|+++++.+.-+.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILA   41 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            47999999999999999999999999999998876443

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.34  E-value=0.00095  Score=55.10  Aligned_cols=38  Identities=21%  Similarity=0.192  Sum_probs=33.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      +-++|.|||+|.+|..+|..++..|++|+++++.+.-+
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l   40 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGI   40 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence            35799999999999999999999999999999876533

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.34  E-value=0.0001  Score=63.13  Aligned_cols=39  Identities=5%  Similarity=0.135  Sum_probs=35.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      .+++++|+|+|++|+|+|..|++.|.+||++++++.++.
T Consensus       179 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~~  217 (233)
T d1djqa3         179 AEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAW  217 (233)
T ss_dssp             GTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCCT
T ss_pred             cCCceeEecCchHHHHHHHHHHhcCCceEEEEecccccc
Confidence            468899999999999999999999999999999987654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.31  E-value=0.0013  Score=53.44  Aligned_cols=33  Identities=27%  Similarity=0.166  Sum_probs=31.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      |++.|||+|.+|.-+|..|++.|++|++++|.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            789999999999999999999999999998754

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=96.25  E-value=0.0018  Score=58.46  Aligned_cols=33  Identities=30%  Similarity=0.231  Sum_probs=31.0

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .|||||+|+.|+-+|..|++.|++|.|+|++.+
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            589999999999999999999999999999854

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=96.13  E-value=0.0022  Score=58.05  Aligned_cols=33  Identities=33%  Similarity=0.354  Sum_probs=30.9

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .|||||+|+.|+-+|..|++.|.+|+|+|++..
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   41 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   41 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            589999999999999999999999999999854

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=96.05  E-value=0.0025  Score=57.21  Aligned_cols=35  Identities=29%  Similarity=0.276  Sum_probs=32.3

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      .++|||+|+.|+-+|..|++.|++|.|+|+++...
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~   40 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   40 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCC
Confidence            58999999999999999999999999999986543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.003  Score=50.23  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=31.2

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ||+|||+|.+|.-+|..|++.|++|+++.|.++
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            799999999999999999999999999998765

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.75  E-value=0.0033  Score=48.42  Aligned_cols=77  Identities=21%  Similarity=0.130  Sum_probs=50.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  119 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~  119 (356)
                      |+++|+|.|.+|..+|..|.+.|++|++++..+         +..    +.+++.|..++.+..      .+...     
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~---------~~~----~~~~~~~~~~~~gd~------~~~~~-----   56 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE---------EKV----NAYASYATHAVIANA------TEENE-----   56 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH---------HHH----HHTTTTCSEEEECCT------TCTTH-----
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH---------HHH----HHHHHhCCcceeeec------ccchh-----
Confidence            689999999999999999999999999997643         332    234556665554321      00000     


Q ss_pred             eCCCcEEecCeEEEecCCCCC
Q 018416          120 LRDGNRLPTDMVVVGIGIRPN  140 (356)
Q Consensus       120 ~~~g~~i~~D~vi~a~G~~p~  140 (356)
                      +..-..-.+|.++++++....
T Consensus        57 l~~a~i~~a~~vi~~~~~~~~   77 (134)
T d2hmva1          57 LLSLGIRNFEYVIVAIGANIQ   77 (134)
T ss_dssp             HHHHTGGGCSEEEECCCSCHH
T ss_pred             hhccCCccccEEEEEcCchHH
Confidence            111012358999999886533

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.65  E-value=0.00085  Score=56.59  Aligned_cols=29  Identities=31%  Similarity=0.398  Sum_probs=25.1

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEe
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVF   69 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~   69 (356)
                      +|+|||+|.+|+-.|..|+++|.+|++++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e   30 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPL   30 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEe
Confidence            69999999999999999999998654443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.50  E-value=0.0051  Score=47.29  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=29.2

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      +|+|+|+|.+|..+|..|.+.|.+|++++..
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d   32 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   32 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence            6899999999999999999999999999863

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.26  E-value=0.0092  Score=47.91  Aligned_cols=96  Identities=21%  Similarity=0.306  Sum_probs=60.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  117 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~  117 (356)
                      ++.+|+|+|+|..|++.+....++|.+|++++.+.         +-.+.++..+.+ .++.....+         ..   
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~---------~~l~~l~~~~~~-~~~~~~~~~---------~~---   88 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV---------ERLSYLETLFGS-RVELLYSNS---------AE---   88 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHGG-GSEEEECCH---------HH---
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH---------HHHHHHHHhhcc-cceeehhhh---------hh---
Confidence            57899999999999999999999999999998653         333444444333 233221111         00   


Q ss_pred             EEeCCCcEEecCeEEEe---cCCCCCchhhhccccc-ccCcEEEe
Q 018416          118 VNLRDGNRLPTDMVVVG---IGIRPNTSLFEGQLTL-EKGGIKVT  158 (356)
Q Consensus       118 v~~~~g~~i~~D~vi~a---~G~~p~~~l~~~~l~~-~~g~I~vd  158 (356)
                        + ....-++|.||-+   .|.++..-+-++.+.. ..|.+.||
T Consensus        89 --l-~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVD  130 (168)
T d1pjca1          89 --I-ETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVD  130 (168)
T ss_dssp             --H-HHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred             --H-HHhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEE
Confidence              0 0112358988865   4555444343444554 78899998

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.19  E-value=0.022  Score=49.18  Aligned_cols=58  Identities=19%  Similarity=0.333  Sum_probs=43.7

Q ss_pred             CCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeC
Q 018416           39 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG  101 (356)
Q Consensus        39 ~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~  101 (356)
                      .++|+|.|| |++|-.++..|.++|.+|+.+.|.+..    .+... ......+...+++++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~----~~~~~-~~~~~~~~~~~v~~v~~   61 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV----SNIDK-VQMLLYFKQLGAKLIEA   61 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS----SCHHH-HHHHHHHHTTTCEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcc----cchhH-HHHHhhhccCCcEEEEe
Confidence            467999995 999999999999999999999887542    23332 22345567788888743

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.035  Score=43.35  Aligned_cols=80  Identities=13%  Similarity=0.035  Sum_probs=52.7

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEE
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  118 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v  118 (356)
                      ..+++|+|.|..|..++..|.+.|.+|++++..+         +......+.+...|+.++.+.....      .     
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~---------~~~~~~~~~~~~~~~~vi~Gd~~d~------~-----   62 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP---------EDDIKQLEQRLGDNADVIPGDSNDS------S-----   62 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC---------HHHHHHHHHHHCTTCEEEESCTTSH------H-----
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc---------hhHHHHHHHhhcCCcEEEEccCcch------H-----
Confidence            3589999999999999999999999999997643         2223334445567888876532100      0     


Q ss_pred             EeCCCcEEecCeEEEecCCC
Q 018416          119 NLRDGNRLPTDMVVVGIGIR  138 (356)
Q Consensus       119 ~~~~g~~i~~D~vi~a~G~~  138 (356)
                      .+..-..-++|.++++++..
T Consensus        63 ~L~~a~i~~a~~vi~~~~~d   82 (153)
T d1id1a_          63 VLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             HHHHHTTTTCSEEEECSSCH
T ss_pred             HHHHhccccCCEEEEccccH
Confidence            00000112488999988753

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=94.72  E-value=0.013  Score=52.88  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=30.9

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            589999999999999999999999999999953

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.01  Score=44.83  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=31.6

Q ss_pred             CCCcEEEECCc-----------hHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGG-----------YIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG-----------~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ..++++|+|+|           +.+..++..|++.|+++.++...|.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            45899999998           4788999999999999999988764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.42  E-value=0.046  Score=46.57  Aligned_cols=58  Identities=22%  Similarity=0.339  Sum_probs=43.6

Q ss_pred             CCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEe
Q 018416           39 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK  100 (356)
Q Consensus        39 ~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~  100 (356)
                      .|||+|.|| |++|-.++..|.+.|.+|+.+.|.+....   +++... ....+...+++++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~---~~~~~~-~~~~~~~~~~~~~~   61 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKAQ-LLESFKASGANIVH   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHHH-HHHHHHTTTCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc---chhHHH-HHHhhccCCcEEEE
Confidence            478999996 99999999999999999999998765432   333333 23456677787753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.99  E-value=0.028  Score=43.93  Aligned_cols=35  Identities=20%  Similarity=0.177  Sum_probs=31.8

Q ss_pred             CCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           39 GGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        39 ~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      -++|.||| .|.+|--+|..|.+.|++|+++++.+.
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            47999999 699999999999999999999987653

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=93.60  E-value=0.029  Score=51.14  Aligned_cols=34  Identities=29%  Similarity=0.414  Sum_probs=31.3

Q ss_pred             cEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCcc
Q 018416           41 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC   74 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~   74 (356)
                      .++|||+|..|+-+|..|++.| .+|.|+|+++..
T Consensus        26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            5999999999999999999998 699999999753

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.032  Score=44.42  Aligned_cols=35  Identities=31%  Similarity=0.345  Sum_probs=32.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+|+++|+|-|.+|-.+|..++..|.+|++.+..|
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            78999999999999999999999999999998754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.53  E-value=0.047  Score=44.86  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=29.6

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++.|||.|++|+-+|..|++.|.+|+.++..+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            58999999999999999999999999998754

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.35  E-value=0.027  Score=44.91  Aligned_cols=32  Identities=16%  Similarity=0.197  Sum_probs=28.7

Q ss_pred             cEEEE-CCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVI-GGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVv-GgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++.|| |+|.+|..+|..|++.|++|++..|.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58899 669999999999999999999998754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.26  E-value=0.03  Score=38.84  Aligned_cols=34  Identities=24%  Similarity=0.119  Sum_probs=31.5

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      |+|.|+|||-.|-.++....++|.+|.++++.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            6899999999999999999999999999988654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.20  E-value=0.04  Score=43.68  Aligned_cols=36  Identities=22%  Similarity=0.212  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++++|+|+|+|.+|+-++..++..|.+|+++++.+
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            368899999999999999999999999999997654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.19  E-value=0.052  Score=44.11  Aligned_cols=36  Identities=31%  Similarity=0.354  Sum_probs=32.8

Q ss_pred             CCCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++|+++|.| +|-+|.++|..|++.|.+|+++.|.+
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            4789999999 69999999999999999999998864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.13  E-value=0.068  Score=42.55  Aligned_cols=35  Identities=20%  Similarity=0.161  Sum_probs=31.9

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .++|+|+|+|+|-++--++..|.+.|.+|+++.|.
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            36799999999999999999999999999999774

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.10  E-value=0.044  Score=43.55  Aligned_cols=37  Identities=14%  Similarity=0.079  Sum_probs=32.9

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .++++|+|+|+|.+|+-++..++..|.+|..+++.+.
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            3789999999999999999999999999999887654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.07  E-value=0.018  Score=47.13  Aligned_cols=32  Identities=28%  Similarity=0.280  Sum_probs=29.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++++|||+|..|.-+|..|++.|.+|++..|.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            57999999999999999999999999998764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.95  E-value=0.068  Score=39.61  Aligned_cols=35  Identities=23%  Similarity=0.240  Sum_probs=32.2

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ..+|.|+|||-.|..+|....++|++|.++++.+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            46799999999999999999999999999998754

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.88  E-value=0.037  Score=43.75  Aligned_cols=31  Identities=26%  Similarity=0.199  Sum_probs=28.9

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++.|||.|.+|.-+|..|.+.|++|+.++|.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            6899999999999999999999999998765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.87  E-value=0.06  Score=43.11  Aligned_cols=35  Identities=26%  Similarity=0.268  Sum_probs=30.5

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   71 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~   71 (356)
                      .++++|+|+|+|.+|+-++..++..|. +|+.+++.
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            378899999999999999999999997 67777654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.77  E-value=0.08  Score=37.57  Aligned_cols=75  Identities=19%  Similarity=0.193  Sum_probs=53.0

Q ss_pred             CcEEEECCchHHH-HHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEE
Q 018416           40 GNAVVIGGGYIGM-ECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  118 (356)
Q Consensus        40 ~~vvVvGgG~iGl-E~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v  118 (356)
                      .|+=+||=|-+|+ -+|..|.++|++|+--++.+.       +     ..+.|++.||+++.+.....+           
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~-------~-----~t~~L~~~Gi~i~~gh~~~~i-----------   58 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET-------E-----RTAYLRKLGIPIFVPHSADNW-----------   58 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC-------H-----HHHHHHHTTCCEESSCCTTSC-----------
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC-------h-----hHHHHHHCCCeEEeeeccccc-----------
Confidence            3677888777777 469999999999999876531       1     244689999999866432111           


Q ss_pred             EeCCCcEEecCeEEEecCCCCCchhh
Q 018416          119 NLRDGNRLPTDMVVVGIGIRPNTSLF  144 (356)
Q Consensus       119 ~~~~g~~i~~D~vi~a~G~~p~~~l~  144 (356)
                             -.+|+||++.+...+...+
T Consensus        59 -------~~~d~vV~SsAI~~~npel   77 (89)
T d1j6ua1          59 -------YDPDLVIKTPAVRDDNPEI   77 (89)
T ss_dssp             -------CCCSEEEECTTCCTTCHHH
T ss_pred             -------CCCCEEEEecCcCCCCHHH
Confidence                   2378999999987665433

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.68  E-value=0.16  Score=43.14  Aligned_cols=52  Identities=23%  Similarity=0.309  Sum_probs=41.2

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEE
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF   98 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v   98 (356)
                      ++|.++|.|+ +-||.++|..|++.|.+|.++.+.         ++-.+.+.+.+++.|.++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~~~~~g~~~   56 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN---------REALEKAEASVREKGVEA   56 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHTTTSCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence            6888999885 569999999999999999998763         344556667778777654

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=92.63  E-value=0.046  Score=49.50  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=30.8

Q ss_pred             cEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCcc
Q 018416           41 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC   74 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~   74 (356)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus        19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~   53 (385)
T d1cf3a1          19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYE   53 (385)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCC
Confidence            6899999999999999999876 799999999753

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.54  E-value=0.093  Score=41.41  Aligned_cols=40  Identities=25%  Similarity=0.307  Sum_probs=33.4

Q ss_pred             HHHhcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416           32 NVMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   71 (356)
Q Consensus        32 ~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~   71 (356)
                      +.+.....++++|||+|-+|-.++..|...|. +++++.|.
T Consensus        17 ~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          17 RELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             HHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             HHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            33444578999999999999999999999998 58888765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.45  E-value=0.1  Score=41.06  Aligned_cols=36  Identities=14%  Similarity=0.090  Sum_probs=32.1

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++++|+|+|+|.+|+-++..++..|.+|..+++.+
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            478999999999999999999999999999887653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.10  E-value=0.065  Score=42.53  Aligned_cols=35  Identities=26%  Similarity=0.207  Sum_probs=30.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~   72 (356)
                      ++++|+|+|+|.+|+-++..+..+|. +|+++++.+
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            67899999999999999999999999 588777653

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=91.98  E-value=0.13  Score=40.79  Aligned_cols=35  Identities=11%  Similarity=0.204  Sum_probs=31.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~   72 (356)
                      +.++|+|+|+|-.|--++..|.+.|. +|+++.|..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            56899999999999999999999996 789987753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.95  E-value=0.06  Score=43.21  Aligned_cols=35  Identities=20%  Similarity=0.241  Sum_probs=31.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~   72 (356)
                      ++++|+|+|+|.+|+-++..+..+|. +|+++++.+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccccc
Confidence            67899999999999999999999998 688887654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=91.89  E-value=0.25  Score=41.91  Aligned_cols=53  Identities=23%  Similarity=0.203  Sum_probs=41.6

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV   99 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~   99 (356)
                      ++|+++|.| ++-+|.++|..|++.|.+|.++.|.+         +-.+.+.+.+++.+..++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~---------~~l~~~~~~~~~~~~~~~   58 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE---------KELDECLEIWREKGLNVE   58 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCCce
Confidence            689999998 67799999999999999999998753         333445667777776553

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.089  Score=42.88  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=33.5

Q ss_pred             CCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416           39 GGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMA   76 (356)
Q Consensus        39 ~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~   76 (356)
                      -|+|+|.| .|++|-.++..|.+.|.+|+++.|.+.-++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~   41 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP   41 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc
Confidence            57899999 599999999999999999999998765444

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=91.88  E-value=0.043  Score=49.12  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=29.7

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .+||||+|..|+-+|..|++. .+|.|+|+++.
T Consensus        28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             cEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            689999999999999999986 89999999974

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.78  E-value=0.058  Score=38.87  Aligned_cols=75  Identities=19%  Similarity=0.136  Sum_probs=54.4

Q ss_pred             CCCcEEEECCchHHHHH-HHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEE
Q 018416           38 SGGNAVVIGGGYIGMEC-AASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  116 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~-A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~  116 (356)
                      ..+++-+||-|-+|+.. |..|.++|++|+-.+...       .+.     .+.|++.|+++..+.....+         
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~-------~~~-----~~~L~~~Gi~v~~g~~~~~i---------   65 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD-------GVV-----TQRLAQAGAKIYIGHAEEHI---------   65 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC-------SHH-----HHHHHHTTCEEEESCCGGGG---------
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC-------Chh-----hhHHHHCCCeEEECCccccC---------
Confidence            46899999988888765 999999999999987653       222     35667789998876542211         


Q ss_pred             EEEeCCCcEEecCeEEEecCCCCCch
Q 018416          117 AVNLRDGNRLPTDMVVVGIGIRPNTS  142 (356)
Q Consensus       117 ~v~~~~g~~i~~D~vi~a~G~~p~~~  142 (356)
                               -..|+||.+.+...+..
T Consensus        66 ---------~~~d~vV~S~AI~~~np   82 (96)
T d1p3da1          66 ---------EGASVVVVSSAIKDDNP   82 (96)
T ss_dssp             ---------TTCSEEEECTTSCTTCH
T ss_pred             ---------CCCCEEEECCCcCCCCH
Confidence                     13589999999876543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.74  E-value=0.1  Score=41.20  Aligned_cols=36  Identities=17%  Similarity=0.072  Sum_probs=32.0

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++++|+|+|+|.+|+-+++.++..|.++.++++.+
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            378999999999999999999999999998877654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=91.66  E-value=0.093  Score=46.21  Aligned_cols=36  Identities=22%  Similarity=0.107  Sum_probs=32.9

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ++|+|+|.| +|++|..++..|.+.|.+|..+.|.+.
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            579999998 799999999999999999999988654

>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.18  Score=37.80  Aligned_cols=41  Identities=20%  Similarity=0.178  Sum_probs=34.4

Q ss_pred             EEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHh
Q 018416          252 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELE  293 (356)
Q Consensus       252 ~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~  293 (356)
                      .||+++++|+|+.+++- -.++.....+|..+...+||.++.
T Consensus        88 IFYLrd~~VVGVLLWNv-Fnrm~iAR~iI~~~~~~~DlnEvA  128 (131)
T d1m6ia3          88 IFYLRDKVVVGIVLWNI-FNRMPIARKIIKDGEQHEDLNEVA  128 (131)
T ss_dssp             EEEEETTEEEEEEEESC-CSCHHHHHHHHHHCCBCSCSTTGG
T ss_pred             EEEecCCcEEEEEEecc-cCccHHHHHHHHcCCccchHHHHH
Confidence            37889999999999984 337787888899999999988765

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.55  E-value=0.066  Score=43.10  Aligned_cols=31  Identities=26%  Similarity=0.297  Sum_probs=28.8

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      +|.|||+|..|.-+|..|++.|.+|++..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            6899999999999999999999999998663

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.51  E-value=0.23  Score=42.29  Aligned_cols=54  Identities=20%  Similarity=0.214  Sum_probs=42.4

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV   99 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~   99 (356)
                      ++|.++|.| ++-||.++|..|++.|.+|.+..|.+        ++..+.+.+.+++.|.+++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~--------~~~~~~~~~~~~~~g~~~~   60 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK--------EDEANSVLEEIKKVGGEAI   60 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc--------HHHHHHHHHHHHhcCCcEE
Confidence            678888877 56799999999999999999988753        3445666777888877654

>d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.41  E-value=0.23  Score=31.53  Aligned_cols=46  Identities=13%  Similarity=0.169  Sum_probs=29.4

Q ss_pred             CeEEEEecCceEEEeecccceEEEEccCCCCceEEEEeeCCeEEEEEEeCC
Q 018416          218 PFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGG  268 (356)
Q Consensus       218 p~~~~~~~~~~~~~~G~~~~~~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~  268 (356)
                      -+.+.++.+++++.+|...++-.=..+.     .+.+.++++|+|+.+++.
T Consensus         9 rSs~FKfgd~~iAiiG~~~g~G~Wid~~-----tK~Fy~d~KiiGaVV~~D   54 (62)
T d1xhca3           9 RSTVFKFGKLQIAIIGNTKGEGKWIEDN-----TKVFYENGKIIGAVVFND   54 (62)
T ss_dssp             CEEEEEETTEEEEEEECCSSCEEEEETT-----EEEEC-----CEEEEESC
T ss_pred             eeeeeeeCCccEEEEEeccCcceeeccc-----ceeeeeCCcEEEEEEehh
Confidence            4567889999999999876654433221     355668899999999995

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.23  Score=43.52  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=29.6

Q ss_pred             CcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      |+|+|.| +|++|-+++..|.+.|.+|+.+++..
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~   36 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH   36 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            7899998 79999999999999999999997643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.21  E-value=0.24  Score=42.28  Aligned_cols=54  Identities=26%  Similarity=0.252  Sum_probs=42.6

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV   99 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~   99 (356)
                      ++|.++|-| ++-||.++|..|++.|.+|.+..+++        .+..+.+.+.+++.|.+++
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~--------~~~~~~~~~~~~~~g~~~~   71 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS--------TESAEEVVAAIKKNGSDAA   71 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc--------hHHHHHHHHHHHhhCCcee
Confidence            678888888 67899999999999999999987653        3455666777788776543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.21  E-value=0.074  Score=42.11  Aligned_cols=35  Identities=29%  Similarity=0.325  Sum_probs=32.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+|+++|+|=|.+|--+|..++..|.+|+++|..|
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            78999999999999999999999999999998654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.14  E-value=0.12  Score=41.61  Aligned_cols=35  Identities=23%  Similarity=0.225  Sum_probs=32.5

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++++.|||.|.||-++|..+...|.+|..+++.+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccc
Confidence            57899999999999999999999999999998754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.09  E-value=0.3  Score=41.26  Aligned_cols=50  Identities=20%  Similarity=0.173  Sum_probs=36.8

Q ss_pred             CcEEEE-C-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEE
Q 018416           40 GNAVVI-G-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF   98 (356)
Q Consensus        40 ~~vvVv-G-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v   98 (356)
                      |+|+|| | ++-||.++|..|++.|.+|.+..|.         ++-.+.+.+.+++.|.++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~i~~~g~~~   52 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN---------DATAKAVASEINQAGGHA   52 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence            566444 6 4569999999999999999998764         344455667777777543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.00  E-value=0.16  Score=40.53  Aligned_cols=35  Identities=17%  Similarity=0.305  Sum_probs=29.9

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~   72 (356)
                      ++++|+|+|+|.+|+-.+..++..|.+ |++.++.+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            678999999999999999999999985 55566544

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=90.85  E-value=0.14  Score=45.16  Aligned_cols=35  Identities=14%  Similarity=0.076  Sum_probs=31.6

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      +.|+|+|+| +|++|-.++..|.+.|.+|+.+.|.+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            458999999 59999999999999999999998864

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.78  E-value=0.26  Score=41.68  Aligned_cols=53  Identities=25%  Similarity=0.202  Sum_probs=40.9

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF   98 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v   98 (356)
                      .+|.++|.| ++-||.++|..|++.|.+|.+..+.        +.+..+.+.+.+++.|.++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~--------~~~~~~~~~~~~~~~g~~~   58 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS--------SSKAAEEVVAELKKLGAQG   58 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC--------ChHHHHHHHHHHHHcCCCc
Confidence            578888887 4569999999999999999987664        3445566677778877644

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=0.35  Score=40.60  Aligned_cols=52  Identities=19%  Similarity=0.121  Sum_probs=38.8

Q ss_pred             CCCcEEEECCc-hHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEE
Q 018416           38 SGGNAVVIGGG-YIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF   98 (356)
Q Consensus        38 ~~~~vvVvGgG-~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v   98 (356)
                      .||.++|.||+ -||.++|..|++.|.+|.+..|.+         +-.+.+.+.+++.|-++
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~---------~~l~~~~~~~~~~~~~~   58 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK---------HGLEETAAKCKGLGAKV   58 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCcE
Confidence            67888888854 599999999999999999987643         33344556666666543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.31  E-value=0.098  Score=40.74  Aligned_cols=34  Identities=26%  Similarity=0.570  Sum_probs=29.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~   71 (356)
                      .+++|.|||+|.+|..+|..|...+.  ++.|++..
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            56899999999999999999998775  68888754

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.21  E-value=0.31  Score=42.38  Aligned_cols=62  Identities=21%  Similarity=0.125  Sum_probs=46.2

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV   99 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~   99 (356)
                      ++|.++|-| ++-||.++|..|++.|.+|.+..+........-..+..+.+.+.+...+....
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAV   68 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccc
Confidence            577777777 45699999999999999999998876544322345666667777777776554

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.14  E-value=0.25  Score=38.99  Aligned_cols=34  Identities=15%  Similarity=0.232  Sum_probs=29.8

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++++|+|.|+ |.+|+-+.+.+...|.+|+.+.+.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccc
Confidence            6789999995 999999999999999999887654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.12  E-value=0.2  Score=40.70  Aligned_cols=52  Identities=21%  Similarity=0.172  Sum_probs=37.0

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG  101 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~  101 (356)
                      .++++|+|+|+|.+|+-++..++..|. +|.++++.+.         -    .+..++.|.+...+
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~---------r----l~~a~~~Ga~~~~~   76 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA---------R----LAHAKAQGFEIADL   76 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH---------H----HHHHHHTTCEEEET
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch---------h----hHhhhhccccEEEe
Confidence            378999999999999999998888888 4566654322         1    23456677766544

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.06  E-value=0.2  Score=39.90  Aligned_cols=39  Identities=18%  Similarity=0.223  Sum_probs=31.8

Q ss_pred             HHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           32 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        32 ~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      +.....++|+++|+|+|-++--++..|.+.| +|+++.|.
T Consensus        11 ~~~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          11 EEIGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             HHHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             HhCCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            3333457899999999999999999998777 89988774

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=89.87  E-value=0.58  Score=39.46  Aligned_cols=53  Identities=26%  Similarity=0.241  Sum_probs=40.1

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEE
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV   99 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~   99 (356)
                      ++|.++|-|+ +-||.++|..|++.|.+|.+..|.         ++-.+.+.+.+++.|.+.+
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~~~~~g~~~~   60 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN---------QKELNDCLTQWRSKGFKVE   60 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCCce
Confidence            6888899885 569999999999999999998764         3333445566777766553

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=89.79  E-value=0.12  Score=38.99  Aligned_cols=47  Identities=21%  Similarity=0.352  Sum_probs=35.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG  101 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~  101 (356)
                      |+++|+|.|..|.+++..|.  +.+|.+++..+.         .    .+.+.+.|+.++.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~---------~----~~~~~~~~~~~i~G   47 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDEN---------V----RKKVLRSGANFVHG   47 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTT---------H----HHHHHHTTCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchH---------H----HHHHHhcCcccccc
Confidence            68999999999999999995  567888865432         1    23446678887755

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.70  E-value=0.35  Score=40.89  Aligned_cols=52  Identities=19%  Similarity=0.182  Sum_probs=39.6

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEE
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF   98 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v   98 (356)
                      ++|.++|-|+ +-+|.++|..|++.|.+|.+..|.         ++-.+.+.+.+++.|.++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~~~~~~~~l~~~g~~~   62 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN---------ADAANHVVDEIQQLGGQA   62 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC---------HHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHHcCCcE
Confidence            6788888874 679999999999999999999764         333455666777776543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.60  E-value=0.11  Score=40.93  Aligned_cols=32  Identities=19%  Similarity=0.152  Sum_probs=29.7

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++|.+||-|..|..+|..|.+.|++|++.+|.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            47999999999999999999999999998765

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.54  E-value=0.12  Score=40.52  Aligned_cols=36  Identities=19%  Similarity=0.088  Sum_probs=31.6

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++++|+|.|+|.+|+-++..+...|.+|+++++.+
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            378899999999999999999999999988886543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.41  E-value=0.24  Score=42.03  Aligned_cols=37  Identities=22%  Similarity=0.383  Sum_probs=31.8

Q ss_pred             CCCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           37 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        37 ~~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .++|.++|.|+ +-||.++|..|++.|.+|.++.+.+.
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            36788888885 56999999999999999999998753

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=89.35  E-value=0.27  Score=38.97  Aligned_cols=34  Identities=12%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++++++|+|+|-.+--++..|.+.+.+|+++.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            6789999999999999999999989999999875

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=89.33  E-value=0.18  Score=40.13  Aligned_cols=34  Identities=12%  Similarity=0.096  Sum_probs=31.2

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .+|-|||-|..|.-+|..|.+.|++|++++|.+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5899999999999999999999999999987653

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.12  E-value=0.66  Score=41.16  Aligned_cols=31  Identities=35%  Similarity=0.533  Sum_probs=28.1

Q ss_pred             CCcEEEEC-CchHHHHHHHHHHHCCCcEEEEe
Q 018416           39 GGNAVVIG-GGYIGMECAASLVINKINVTMVF   69 (356)
Q Consensus        39 ~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~   69 (356)
                      |++|+|.| +|++|-.++..|.+.|++|+.++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            57899998 79999999999999999999985

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=89.10  E-value=0.2  Score=40.97  Aligned_cols=34  Identities=18%  Similarity=-0.033  Sum_probs=31.3

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .++++.|||-|.||-++|..|...|.+|..+++.
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence            5789999999999999999999999999988754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.07  E-value=0.45  Score=40.14  Aligned_cols=49  Identities=27%  Similarity=0.206  Sum_probs=38.5

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG   95 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~G   95 (356)
                      ++|.++|.| ++-||.++|..|++.|.+|.+..|.         ++-.+.+.+.+++.+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~---------~~~l~~~~~~l~~~~   58 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCART---------VGNIEELAAECKSAG   58 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcC
Confidence            678888888 5679999999999999999988763         344455666777765

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.07  E-value=0.14  Score=43.16  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=29.1

Q ss_pred             cEEEECC-chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVIGG-GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      +|+|.|| |++|-.++..|...|++|+.+.|.+
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            5899996 9999999999999999999888764

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.88  E-value=0.34  Score=42.26  Aligned_cols=43  Identities=19%  Similarity=0.182  Sum_probs=35.0

Q ss_pred             HHHHHHhcCCCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           29 RLVNVMKSCSGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        29 ~i~~~l~~~~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+++.+.. .+|+++|.| +|++|-.++..|.+.|.+|+.+++..
T Consensus         7 ~~~~~~~~-~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_           7 ELRKELPA-QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             HHHHHHHH-SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             HHHHhCCC-CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            34444443 688999987 79999999999999999999998743

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=88.81  E-value=0.48  Score=37.72  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=31.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~   73 (356)
                      .+++|+|+|+|-.|--++..|.+.|. +++++.|.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            57899999999999999999999988 6888888654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.79  E-value=0.45  Score=40.06  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=30.0

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++|.++|-|+ +-||.++|..|++.|.+|.+..+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   38 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6788899885 569999999999999999999874

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.71  E-value=0.16  Score=41.11  Aligned_cols=32  Identities=28%  Similarity=0.370  Sum_probs=27.9

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      +|.|||.|++|+-+|..|+ .|.+|+.++..+.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            6899999999999998886 5999999986643

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=88.67  E-value=0.18  Score=39.08  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=29.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCC--CcEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINK--INVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~   71 (356)
                      +.++++|||+|.+|.-+|..|+..|  .++.++++.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            3568999999999999999999987  479999754

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=88.57  E-value=0.2  Score=38.84  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=27.4

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCC--cEEEEeeC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~   71 (356)
                      |+|+|||+|.+|..+|..|..+|.  ++.|++..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            789999999999999999998775  67877643

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=88.55  E-value=0.22  Score=40.63  Aligned_cols=35  Identities=20%  Similarity=0.095  Sum_probs=32.0

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++++.|||.|.||-++|..|...|.+|..+++.+
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cceeeeeeecccccccccccccccceeeeccCCcc
Confidence            46899999999999999999999999999998754

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.52  E-value=0.25  Score=41.15  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|+++|.|+ +-+|.++|..|++.|.+|.++.+.+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3789999985 6799999999999999999987754

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=88.41  E-value=0.45  Score=40.73  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=30.8

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|.++|-| ++-||..+|..|++.|.+|.+..|.+
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            578888887 67899999999999999999998753

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.38  E-value=0.51  Score=39.76  Aligned_cols=36  Identities=14%  Similarity=0.302  Sum_probs=31.5

Q ss_pred             CCCcEEEECCc-hHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGG-YIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG-~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ++|.++|.||+ -||.++|..|++.|.+|.++.+.+.
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            68899999865 6999999999999999999987653

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=88.32  E-value=0.32  Score=40.83  Aligned_cols=56  Identities=18%  Similarity=0.154  Sum_probs=39.1

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCc-EEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKIN-VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV   99 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~-Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~   99 (356)
                      +++.++|.| +|-||.++|..|++.|.+ |.++.|...      +.+-.+.+.+.+++.|.++.
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~------~~~~~~~~~~~l~~~g~~v~   65 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP------DADGAGELVAELEALGARTT   65 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG------GSTTHHHHHHHHHHTTCEEE
T ss_pred             CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCcc------CHHHHHHHHHHHHhcccccc
Confidence            556788888 588999999999999985 677766532      22223445566777777654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=88.31  E-value=0.26  Score=39.97  Aligned_cols=36  Identities=25%  Similarity=0.215  Sum_probs=32.5

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..++++.|||-|.||-++|..|...|.+|...++..
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             eeCceEEEeccccccccceeeeeccccceeeccCcc
Confidence            367899999999999999999999999999987653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.26  E-value=0.43  Score=40.58  Aligned_cols=50  Identities=14%  Similarity=0.197  Sum_probs=37.4

Q ss_pred             CCcEEEE--CCchHHHHHHHHHHHC-CCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCE
Q 018416           39 GGNAVVI--GGGYIGMECAASLVIN-KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        39 ~~~vvVv--GgG~iGlE~A~~L~~~-G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~   97 (356)
                      +|||+||  |++-||.++|..|++. |.+|.+..|..         +-.+.+.+.|++.|.+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~---------~~~~~~~~~l~~~~~~   54 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDV---------TRGQAAVQQLQAEGLS   54 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSH---------HHHHHHHHHHHHTTCC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCH---------HHHHHHHHHHHhcCCc
Confidence            7899888  4667899999999986 89999987643         3345556667776654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=88.25  E-value=0.23  Score=38.77  Aligned_cols=35  Identities=17%  Similarity=0.234  Sum_probs=29.6

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~   72 (356)
                      +.++++|||+|.+|..+|..|...+. ++.+++..+
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            56899999999999999998888775 788887554

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.22  E-value=0.23  Score=37.43  Aligned_cols=37  Identities=16%  Similarity=0.188  Sum_probs=32.2

Q ss_pred             CCCcEEEECCch-----------HHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416           38 SGGNAVVIGGGY-----------IGMECAASLVINKINVTMVFPEAHC   74 (356)
Q Consensus        38 ~~~~vvVvGgG~-----------iGlE~A~~L~~~G~~Vtlv~~~~~~   74 (356)
                      ..|+|+|+|+|+           .+.+++..|++.|+++.++...|.=
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            468999999985           7889999999999999999887653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.13  E-value=0.26  Score=38.64  Aligned_cols=31  Identities=23%  Similarity=0.279  Sum_probs=26.0

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCCc--EEEEee
Q 018416           40 GNAVVIGGGYIGMECAASLVINKIN--VTMVFP   70 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~~--Vtlv~~   70 (356)
                      |++.|||.|.+|--+|..|.+.|..  |+.+++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~   34 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI   34 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            4799999999999999999999974  555544

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=88.13  E-value=0.3  Score=37.55  Aligned_cols=34  Identities=15%  Similarity=0.431  Sum_probs=28.9

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCCc
Q 018416           40 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~~   73 (356)
                      ++|+|||+|.+|..+|..|...+.  ++.|++..+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            479999999999999999999876  7999987664

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.06  E-value=0.56  Score=39.58  Aligned_cols=51  Identities=12%  Similarity=0.055  Sum_probs=37.5

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCE
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   97 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~   97 (356)
                      ++|.++|.| ++-||.++|..|++.|.+|.++.|.+         +-.+.+.+.+++.+.+
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~---------~~l~~~~~~~~~~~~~   58 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE---------YELNECLSKWQKKGFQ   58 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCc
Confidence            578888887 45699999999999999999987743         2233445556665544

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.06  E-value=0.3  Score=40.77  Aligned_cols=37  Identities=22%  Similarity=0.230  Sum_probs=31.9

Q ss_pred             CCCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           37 CSGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        37 ~~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .++|.++|.| ++-+|.++|..|++.|.+|.++.|...
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            3688889998 456999999999999999999988753

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=0.19  Score=42.26  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=29.8

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   71 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~   71 (356)
                      .++|+|+|.|-+|.++|..|++.|. ++++++..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            5799999999999999999999998 67888754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.01  E-value=0.15  Score=39.94  Aligned_cols=32  Identities=16%  Similarity=0.193  Sum_probs=29.2

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      +|.|||-|..|..+|..|.+.|++|++.++.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            58999999999999999999999999987643

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.78  E-value=0.2  Score=40.68  Aligned_cols=33  Identities=12%  Similarity=0.135  Sum_probs=27.2

Q ss_pred             CCcEEEECC-chHHHHHHHHHHHCCCc--EEEEeeC
Q 018416           39 GGNAVVIGG-GYIGMECAASLVINKIN--VTMVFPE   71 (356)
Q Consensus        39 ~~~vvVvGg-G~iGlE~A~~L~~~G~~--Vtlv~~~   71 (356)
                      +|+|+|.|| |++|-+++..|.+.|..  |+.+.|.
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~   37 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   37 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence            689999997 99999999999999984  4444443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=87.59  E-value=0.31  Score=39.83  Aligned_cols=34  Identities=18%  Similarity=0.105  Sum_probs=31.0

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEee
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFP   70 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~   70 (356)
                      ..+++|+|.|-|.+|..+|..|.+.|.+|++.+.
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~   58 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADT   58 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecc
Confidence            4789999999999999999999999999987753

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=87.57  E-value=0.26  Score=37.95  Aligned_cols=33  Identities=21%  Similarity=0.222  Sum_probs=28.1

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPE   71 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~   71 (356)
                      |.+++|||+|.+|..+|..|...+.  ++.|++..
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            4689999999999999999998876  67777643

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=87.44  E-value=0.26  Score=37.88  Aligned_cols=33  Identities=18%  Similarity=0.393  Sum_probs=27.6

Q ss_pred             CcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC
Q 018416           40 GNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~   72 (356)
                      ++|.|||+|.+|..+|..|...+. ++.+++..+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            589999999999999999988776 777776543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.42  E-value=0.32  Score=38.62  Aligned_cols=36  Identities=17%  Similarity=0.205  Sum_probs=31.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~   73 (356)
                      ++++|+|+|+|.+|+-.+..++..|. +|..++..+.
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            67899999999999999999999995 6888887654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.27  E-value=0.77  Score=38.48  Aligned_cols=52  Identities=25%  Similarity=0.148  Sum_probs=39.0

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEE
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF   98 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v   98 (356)
                      .+|.++|.|| +-||.++|..|++.|.+|.++.|.         ++-.+.+.+.+++.|.++
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~---------~~~l~~~~~~l~~~g~~~   61 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRT---------QKSCDSVVDEIKSFGYES   61 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESS---------HHHHHHHHHHHHTTTCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence            4677777775 579999999999999999998764         334455666777776543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.02  E-value=0.33  Score=41.10  Aligned_cols=35  Identities=14%  Similarity=0.252  Sum_probs=31.1

Q ss_pred             CCCcEEEECC-c--hHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGG-G--YIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGg-G--~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|+++|.|+ |  -||..+|..|++.|.+|.+..|.+
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6899999995 3  499999999999999999999864

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.90  E-value=0.64  Score=38.69  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=32.6

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCM   75 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~l   75 (356)
                      ++|+++|-|+ +-||.++|..|++.|.+|.+..|.+.-.
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~   44 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP   44 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence            6788888885 4699999999999999999999876543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=86.88  E-value=0.3  Score=41.07  Aligned_cols=34  Identities=15%  Similarity=0.058  Sum_probs=29.3

Q ss_pred             CCCcEEEECC-ch--HHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GY--IGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~--iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++|+++|.|+ |-  ||.++|..|++.|.+|.+..+.
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            6899999994 43  9999999999999999988654

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.86  E-value=0.28  Score=37.87  Aligned_cols=32  Identities=19%  Similarity=0.170  Sum_probs=29.0

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ||.|||.|..|.-+|..|.+.|.+|++..+.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            68999999999999999999999998887654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.85  E-value=0.34  Score=40.75  Aligned_cols=35  Identities=29%  Similarity=0.408  Sum_probs=30.0

Q ss_pred             CCCcEEEECCc---hHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGG---YIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG---~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|.++|.|++   -||.++|..|++.|.+|.+..+.+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            68999999963   499999999999999998877653

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=86.77  E-value=0.33  Score=42.48  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=30.2

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++|+|+|.| +|++|..++..|.+.|.+|..+.|.
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            579999998 7999999999999999999876664

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.49  E-value=0.35  Score=41.59  Aligned_cols=34  Identities=24%  Similarity=0.187  Sum_probs=30.6

Q ss_pred             CcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      |+|+|.| +|++|-.++..|.++|++|+.+.|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            6899998 699999999999999999999988754

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=86.44  E-value=0.49  Score=39.92  Aligned_cols=35  Identities=26%  Similarity=0.263  Sum_probs=29.3

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|.++|-| ++-||.++|..|++.|.+|.+..+.+
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            567777777 45699999999999999999998764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.43  E-value=0.44  Score=39.25  Aligned_cols=46  Identities=13%  Similarity=0.227  Sum_probs=36.5

Q ss_pred             HHHHHHHHhcCCCCcEEEEC-CchHHHHHHHHHHHCCC--cEEEEeeCCc
Q 018416           27 ANRLVNVMKSCSGGNAVVIG-GGYIGMECAASLVINKI--NVTMVFPEAH   73 (356)
Q Consensus        27 a~~i~~~l~~~~~~~vvVvG-gG~iGlE~A~~L~~~G~--~Vtlv~~~~~   73 (356)
                      +-++++.+.. ..++|+|.| .|++|-+++..|.+.|.  +|+++.|++.
T Consensus         3 ~~~~~~~~~m-~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1           3 LSKLREDFRM-QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             HHHHHHHHHH-TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             hHHHHHHhCC-CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            3455555554 468899998 69999999999999885  8999998764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.37  E-value=0.38  Score=37.93  Aligned_cols=33  Identities=12%  Similarity=0.274  Sum_probs=28.8

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEe
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVF   69 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~   69 (356)
                      .++++|+|+|+|.+|+-++..+...|.++.++.
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~   59 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAV   59 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeee
Confidence            367899999999999999999999999876654

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=86.22  E-value=1  Score=37.13  Aligned_cols=71  Identities=13%  Similarity=0.141  Sum_probs=49.7

Q ss_pred             CCCcEEEEC-----------------CchHHHHHHHHHHHCCCcEEEEeeCCccCCc-c-------CCHHHHHHHHHHHH
Q 018416           38 SGGNAVVIG-----------------GGYIGMECAASLVINKINVTMVFPEAHCMAR-L-------FTPKIASYYEEYYK   92 (356)
Q Consensus        38 ~~~~vvVvG-----------------gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-~-------~d~~~~~~~~~~l~   92 (356)
                      .+++|+|-+                 +|-.|.++|..+.++|.+||+|.....+.++ .       --.+|...+.+.+.
T Consensus         5 ~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~~~   84 (223)
T d1u7za_           5 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQ   84 (223)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHHGG
T ss_pred             CCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhhhc
Confidence            577888865                 4789999999999999999999775543221 0       12577777777777


Q ss_pred             hCCCEEEeCCeeeEEEE
Q 018416           93 SKGVKFVKGTVLSSFDV  109 (356)
Q Consensus        93 ~~GV~v~~~~~v~~i~~  109 (356)
                      +..+-+. ..-|..+..
T Consensus        85 ~~D~~i~-aAAvsDf~~  100 (223)
T d1u7za_          85 QQNIFIG-CAAVADYRA  100 (223)
T ss_dssp             GCSEEEE-CCBCCSEEE
T ss_pred             cceeEee-eechhhhhh
Confidence            7666544 445555543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=86.08  E-value=0.31  Score=38.53  Aligned_cols=31  Identities=19%  Similarity=0.285  Sum_probs=28.7

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++-|||-|..|..+|..|.+.|++|++.+|.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            5899999999999999999999999988764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.98  E-value=0.69  Score=39.30  Aligned_cols=50  Identities=20%  Similarity=0.209  Sum_probs=37.9

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV   96 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV   96 (356)
                      ++|.++|-|+ +-||.++|..|++.|.+|.+..|.         ++-.+.+.+.+++.|.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~i~~~~~   53 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRN---------EDRLEETKQQILKAGV   53 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHHcCC
Confidence            5788888874 569999999999999999998763         3334555666666653

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.92  E-value=1.4  Score=33.32  Aligned_cols=42  Identities=12%  Similarity=0.124  Sum_probs=35.2

Q ss_pred             HHHHHHHhcCCCCcEEEECCc----hHHHHHHHHHHHCCCcEEEEeeC
Q 018416           28 NRLVNVMKSCSGGNAVVIGGG----YIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        28 ~~i~~~l~~~~~~~vvVvGgG----~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .++++.|.  ++|+++|||+.    -.|-.++..|.+.|++|..|.+.
T Consensus        10 ~~i~~~L~--~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~   55 (139)
T d2d59a1          10 EDIREILT--RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPK   55 (139)
T ss_dssp             HHHHHHHH--HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT
T ss_pred             HHHHHHHh--cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCc
Confidence            45666665  47999999965    58999999999999999999876

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=85.87  E-value=0.41  Score=40.89  Aligned_cols=35  Identities=20%  Similarity=0.111  Sum_probs=31.0

Q ss_pred             CCCcEEEECCc---hHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGG---YIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG---~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|+++|-|++   -||.++|..|++.|.+|.+..+.+
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~   44 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP   44 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            68999999975   599999999999999999887754

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.83  E-value=2.8  Score=31.67  Aligned_cols=62  Identities=15%  Similarity=0.192  Sum_probs=42.0

Q ss_pred             CCcEEEECC-chHHHHHHHHHHHCC---CcEEEEeeCCccCCc--------------------------cCCHHHHHHHH
Q 018416           39 GGNAVVIGG-GYIGMECAASLVINK---INVTMVFPEAHCMAR--------------------------LFTPKIASYYE   88 (356)
Q Consensus        39 ~~~vvVvGg-G~iGlE~A~~L~~~G---~~Vtlv~~~~~~l~~--------------------------~~d~~~~~~~~   88 (356)
                      +-+|.|||+ |++|.|+...|.++.   .+++.+.........                          ..+.+.+..+.
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~~   81 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHA   81 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhhhc
Confidence            468999995 999999999998653   356655433211000                          14667777777


Q ss_pred             HHHHhCCCEEEe
Q 018416           89 EYYKSKGVKFVK  100 (356)
Q Consensus        89 ~~l~~~GV~v~~  100 (356)
                      ..+.++|..++-
T Consensus        82 ~~~~~~g~~VID   93 (144)
T d2hjsa1          82 ERARAAGCSVID   93 (144)
T ss_dssp             HHHHHTTCEEEE
T ss_pred             cccccCCceEEe
Confidence            788888877653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.59  E-value=0.75  Score=38.98  Aligned_cols=49  Identities=18%  Similarity=0.166  Sum_probs=37.5

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG   95 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~G   95 (356)
                      ++|.++|.| ++-||.++|..|++.|.+|.+..|.+         +-.+.+.+.+++.+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~---------~~l~~~~~~l~~~~   53 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS---------ERLEETRQIILKSG   53 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcC
Confidence            578888887 46799999999999999999998643         33445556666654

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.41  E-value=0.54  Score=37.73  Aligned_cols=36  Identities=22%  Similarity=0.135  Sum_probs=32.8

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .++++.|+|-|.+|-++|..+...|.+|...++...
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            578999999999999999999999999999987543

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.27  E-value=0.4  Score=41.42  Aligned_cols=32  Identities=22%  Similarity=0.403  Sum_probs=29.1

Q ss_pred             CcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           40 GNAVVIG-GGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        40 ~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      |+|+|.| +|++|-.++..|.++|.+|+.+.+.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            7899998 6999999999999999999998753

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=85.23  E-value=0.39  Score=38.01  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=29.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~   72 (356)
                      ++++|+|+|+|.+|+-++..++..|.+ |..+++.+
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            678999999999999999999999974 66666543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=85.04  E-value=1.3  Score=36.98  Aligned_cols=51  Identities=22%  Similarity=0.147  Sum_probs=36.8

Q ss_pred             CCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEE
Q 018416           39 GGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF   98 (356)
Q Consensus        39 ~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v   98 (356)
                      +|-++|-| ++-||.++|..|++.|.+|.+..|.         ++-.+.+.+.+++.|.++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~---------~~~l~~~~~~l~~~g~~~   53 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARG---------EEGLRTTLKELREAGVEA   53 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence            34455666 4569999999999999999998764         334455566677776543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=84.97  E-value=0.8  Score=39.74  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=28.3

Q ss_pred             cEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           41 NAVVIG-GGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        41 ~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      +|+|.| +|++|-.++..|.+.|.+|+++.+-.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~   34 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLC   34 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            588887 79999999999999999999997643

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=84.96  E-value=0.42  Score=39.99  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=30.9

Q ss_pred             CCCcEEEECCc---hHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIGGG---YIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvGgG---~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      ++|+++|.|++   -+|..+|..|++.|.+|.+..+.+.
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            58899999865   3889999999999999999987643

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.95  E-value=0.7  Score=36.59  Aligned_cols=36  Identities=25%  Similarity=0.204  Sum_probs=31.3

Q ss_pred             CCCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..+|+++||| +..+|.-+|..|.++|..||+++...
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~   63 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN   63 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccc
Confidence            4689999999 55679999999999999999987553

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.86  E-value=1  Score=38.03  Aligned_cols=35  Identities=26%  Similarity=0.257  Sum_probs=30.6

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|+++|.|| +-+|.++|..|++.|.+|.++.|..
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6889999985 4599999999999999999998753

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.82  E-value=0.32  Score=44.50  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=30.3

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   71 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~   71 (356)
                      ..+|+|||+|-+|.|+|..|++.|. ++++++..
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            4689999999999999999999998 79999875

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.72  E-value=0.51  Score=41.39  Aligned_cols=36  Identities=19%  Similarity=0.155  Sum_probs=31.2

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      +..+|+|.| +|++|..++..|.++|.+|+.+++.+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            356899998 799999999999999999999976543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=84.63  E-value=0.53  Score=37.75  Aligned_cols=35  Identities=11%  Similarity=0.139  Sum_probs=32.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++++.|||.|.+|.++|..|...|.+|..+++..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            57899999999999999999999999999998764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.61  E-value=0.57  Score=39.10  Aligned_cols=34  Identities=29%  Similarity=0.291  Sum_probs=30.3

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++|+++|.|+ +-||..+|..|++.|.+|.++.|.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   38 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            6889999985 569999999999999999999865

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=84.32  E-value=0.54  Score=39.22  Aligned_cols=35  Identities=23%  Similarity=0.227  Sum_probs=30.4

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .+|.++|.|| +-||.++|..|++.|.+|.+..|..
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6889999885 5599999999999999999987653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.24  E-value=0.57  Score=39.16  Aligned_cols=34  Identities=26%  Similarity=0.304  Sum_probs=30.4

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .+|+++|.| ++-||.++|..|++.|.+|.++.|.
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~   40 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            689999998 5679999999999999999999864

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.20  E-value=0.58  Score=39.45  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=30.6

Q ss_pred             CCCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           37 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        37 ~~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .++|.++|.|+ +-||.++|..|++.|.+|.+..|.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVL   38 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            36889999985 469999999999999999999874

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.12  E-value=0.91  Score=35.83  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=31.8

Q ss_pred             CCCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..+|+++|||- ..+|.-+|..|.+.|..|++++...
T Consensus        37 l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          37 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cccceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            37899999995 5699999999999999999998754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=84.08  E-value=0.58  Score=35.69  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=28.5

Q ss_pred             cEEEECCchHHHHHHHHHHHCCC--cEEEEeeCCc
Q 018416           41 NAVVIGGGYIGMECAASLVINKI--NVTMVFPEAH   73 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~~   73 (356)
                      +++|||+|.+|..+|..|...+.  ++.|++..+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            68999999999999999999874  8999986653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.98  E-value=0.4  Score=37.83  Aligned_cols=34  Identities=12%  Similarity=0.186  Sum_probs=28.8

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++++|+|.|+ |.+|.-+++.+...|.+|..+.+.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~   59 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS   59 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecc
Confidence            5678888885 999999999999999999877643

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=83.77  E-value=0.56  Score=36.95  Aligned_cols=36  Identities=28%  Similarity=0.337  Sum_probs=31.3

Q ss_pred             CCCCcEEEECCc-hHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGGG-YIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGgG-~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ..+|+++|||.+ ..|.-+|..|.+.|..||+++...
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            478999999955 599999999999999999997654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.46  E-value=1.1  Score=37.73  Aligned_cols=49  Identities=18%  Similarity=0.137  Sum_probs=36.5

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG   95 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~G   95 (356)
                      ++|.++|.| ++-||.++|..|++.|.+|.+..|.+         +-.+.+.+.+++.|
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~---------~~l~~~~~~l~~~~   53 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA---------ERLEETRQQILAAG   53 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcC
Confidence            567777777 56899999999999999999997643         33344556666654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.38  E-value=0.45  Score=39.83  Aligned_cols=35  Identities=14%  Similarity=0.108  Sum_probs=30.2

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|.++|.| ++-+|.++|..|++.|.+|.++.|.+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            577777776 67899999999999999999998753

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=83.27  E-value=0.73  Score=38.59  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=31.1

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|.++|-| ++-||.++|..|++.|.+|.+..+.+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            588888888 67799999999999999999998764

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.21  E-value=0.61  Score=40.41  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=29.6

Q ss_pred             CcE-EEEC-CchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNA-VVIG-GGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~v-vVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      |+| +|.| +|++|-.++..|.++|++|+.+.|.+.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            577 6777 689999999999999999999988654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=82.98  E-value=0.71  Score=39.04  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=29.8

Q ss_pred             CCCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++|.++|.| ++-||.++|..|++.|.+|.++.+.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA   39 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            678888888 5669999999999999999998764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.95  E-value=0.7  Score=38.23  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=30.4

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++|+++|.|+ +-||.++|..|++.|.+|.+..|.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~   37 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARN   37 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999985 679999999999999999999875

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=82.83  E-value=0.74  Score=36.02  Aligned_cols=34  Identities=26%  Similarity=0.485  Sum_probs=29.4

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~   71 (356)
                      +..+|.|||+|.+|..+|..|...|.  ++.|++..
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            45699999999999999999999987  78888653

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.72  E-value=0.73  Score=36.79  Aligned_cols=34  Identities=26%  Similarity=0.198  Sum_probs=31.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      .++++.|+|.|.+|-++|..+...|.+|..+++.
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~   76 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY   76 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             cceeeeeccccchhHHHHHHhhhccceEEeecCC
Confidence            5789999999999999999999999999888754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.69  E-value=0.85  Score=35.18  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=27.9

Q ss_pred             CCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC
Q 018416           39 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   72 (356)
Q Consensus        39 ~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~   72 (356)
                      ..+|+|||+|.+|..+|..|...+. ++.|++..+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            4689999999999999998888775 577777544

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=82.63  E-value=0.55  Score=41.30  Aligned_cols=33  Identities=24%  Similarity=0.153  Sum_probs=28.4

Q ss_pred             CcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           40 GNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        40 ~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      |.|+|.| +|++|-.++..|.+.|.+|+.+.|.+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5677888 89999999999999999999998854

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=82.24  E-value=1.9  Score=35.72  Aligned_cols=50  Identities=24%  Similarity=0.238  Sum_probs=36.5

Q ss_pred             EEEE-C-CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEE
Q 018416           42 AVVI-G-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV   99 (356)
Q Consensus        42 vvVv-G-gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~   99 (356)
                      |++| | ++-+|.++|..|++.|.+|.+..++        +++..+.+.+.+++.|.+++
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~--------~~~~~~~~~~~~~~~g~~~~   54 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYAR--------SAKAAEEVSKQIEAYGGQAI   54 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHHHHHHHHHcCCcEE
Confidence            5555 3 5679999999999999999886543        34455667777777776543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.97  E-value=0.84  Score=38.02  Aligned_cols=34  Identities=12%  Similarity=0.070  Sum_probs=29.9

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++|.++|-|+ +-||.++|..|++.|.+|.+..|.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~   38 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            5788888885 569999999999999999999875

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.70  E-value=0.74  Score=39.66  Aligned_cols=34  Identities=18%  Similarity=0.122  Sum_probs=30.0

Q ss_pred             CcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      |+++|.| +|++|-.++..|.++|++|+.+.|...
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~   36 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   36 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            5677777 799999999999999999999998654

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=81.60  E-value=0.79  Score=38.94  Aligned_cols=34  Identities=18%  Similarity=0.318  Sum_probs=30.4

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++|.++|-|| +-||.++|..|++.|.+|.++.|.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKS   38 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            5788999884 689999999999999999999875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=81.52  E-value=0.85  Score=35.67  Aligned_cols=35  Identities=17%  Similarity=0.183  Sum_probs=29.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~   72 (356)
                      ++++|+|+|+|.+|.-++..++..|. +|..+++.+
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            67899999999999999999999986 566666554

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=81.32  E-value=0.54  Score=40.23  Aligned_cols=34  Identities=12%  Similarity=0.110  Sum_probs=29.7

Q ss_pred             CcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      |+|+|.| +|++|-.++..|.+.|..|.++.....
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~   37 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE   37 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh
Confidence            6899998 799999999999999999888766554

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.28  E-value=0.9  Score=37.91  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=29.8

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++|.++|-|+ +-||.++|..|++.|.+|.+..|.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~   39 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDIL   39 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            5788888885 669999999999999999998774

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.18  E-value=0.92  Score=38.00  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=30.2

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++|.++|-|+ +-||.++|..|++.|.+|.+..|.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD   39 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6889999984 679999999999999999998764

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=81.02  E-value=0.98  Score=37.67  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=30.4

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|.++|-|+ +-||..+|..|++.|.+|.+..+.+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            6788888885 5799999999999999999998754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=81.01  E-value=0.93  Score=35.32  Aligned_cols=51  Identities=18%  Similarity=0.157  Sum_probs=37.1

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG  101 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~  101 (356)
                      ++++|+|+|+|.+|+-++..++..|.. |+.+++.+.   +          .+..++.|.+-..+
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~---r----------l~~a~~~GAd~~in   79 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD---K----------FEKAKVFGATDFVN   79 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG---G----------HHHHHHTTCCEEEC
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHH---H----------HHHHHHcCCcEEEc
Confidence            678899999999999999999998875 666665543   1          34456777654433

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.01  E-value=0.65  Score=39.04  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=30.0

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++|.++|.|+ +-||.++|..|++.|.+|.+..|.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADIN   38 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            5788888885 789999999999999999999764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.84  E-value=0.89  Score=38.05  Aligned_cols=35  Identities=29%  Similarity=0.321  Sum_probs=30.0

Q ss_pred             CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      ++|.++|.|+ +-||.++|..|++.|.+|.+..|.+
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4788888885 6699999999999999999998753

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.75  E-value=0.42  Score=39.48  Aligned_cols=123  Identities=17%  Similarity=0.141  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHhcCCCCcEEEEC--CchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeC
Q 018416           24 LADANRLVNVMKSCSGGNAVVIG--GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG  101 (356)
Q Consensus        24 ~~da~~i~~~l~~~~~~~vvVvG--gG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~  101 (356)
                      .+...-+.......++|+|+=||  .|++++-+|..+... .+|+-++.         +++..+..++.+++.|+.    
T Consensus        45 ~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~-g~i~tie~---------~~~~~~~A~~~~~~ag~~----  110 (219)
T d2avda1          45 CEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPAD-GRVVTCEV---------DAQPPELGRPLWRQAEAE----  110 (219)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTT-CEEEEEES---------CSHHHHHHHHHHHHTTCT----
T ss_pred             HHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCC-ceEEEEee---------chhHHHHHHHHHHhcCcc----
Confidence            44444454455555899999998  678999999888664 47887774         455666667778877742    


Q ss_pred             CeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhccccc--ccCcEEEeccc
Q 018416          102 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL--EKGGIKVTGRL  161 (356)
Q Consensus       102 ~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~--~~g~I~vd~~l  161 (356)
                      .++.-+.++....+.. .+..+..-++|+|++-.........++..+..  .+|-|.+|+.+
T Consensus       111 ~~i~~~~Gda~e~l~~-~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l  171 (219)
T d2avda1         111 HKIDLRLKPALETLDE-LLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVL  171 (219)
T ss_dssp             TTEEEEESCHHHHHHH-HHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             ceEEEEEeehhhcchh-hhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence            2232222100000000 01223334688888875554444445544443  44556667644

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.58  E-value=0.77  Score=37.60  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=29.1

Q ss_pred             CcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           40 GNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        40 ~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      |.++|-|+ +-||.++|..|++.|.+|.+..+.+.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            56777774 78999999999999999999988754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.53  E-value=0.73  Score=35.42  Aligned_cols=31  Identities=13%  Similarity=0.093  Sum_probs=28.3

Q ss_pred             cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416           41 NAVVIGGGYIGMECAASLVINKINVTMVFPE   71 (356)
Q Consensus        41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~   71 (356)
                      ++.+||.|..|.-++..|.+.|.++++..|.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence            5899999999999999999999999988764

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.47  E-value=0.81  Score=35.83  Aligned_cols=36  Identities=14%  Similarity=0.168  Sum_probs=31.0

Q ss_pred             CCCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           37 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        37 ~~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++++|+|.|+ |.+|.-+.+.+...|.+|..+.+.+
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            37788999995 9999999999999999998887654

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=80.45  E-value=1  Score=36.11  Aligned_cols=35  Identities=14%  Similarity=0.074  Sum_probs=31.7

Q ss_pred             CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416           38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   72 (356)
Q Consensus        38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~   72 (356)
                      .++++.|||-|.||-++|..+...|.+|..+.+..
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   80 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHR   80 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cccceEEeecccchHHHHHHHHhhccccccccccc
Confidence            47899999999999999999999999999887653

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=80.32  E-value=1.3  Score=36.78  Aligned_cols=33  Identities=15%  Similarity=0.097  Sum_probs=30.5

Q ss_pred             CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEe
Q 018416           37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVF   69 (356)
Q Consensus        37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~   69 (356)
                      ..+++++|-|-|.+|..+|..|.+.|.+|+.++
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d   69 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTD   69 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEeec
Confidence            478999999999999999999999999998764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.09  E-value=0.73  Score=38.00  Aligned_cols=35  Identities=23%  Similarity=0.261  Sum_probs=30.3

Q ss_pred             CCcEEEEC-CchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416           39 GGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   73 (356)
Q Consensus        39 ~~~vvVvG-gG~iGlE~A~~L~~~G~~Vtlv~~~~~   73 (356)
                      .++|+|.| ++-+|.++|..|++.|.+|.++.+.+.
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            35788887 578999999999999999999988754