Citrus Sinensis ID: 018435
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 356 | 2.2.26 [Sep-21-2011] | |||||||
| Q99JW2 | 408 | Aminoacylase-1 OS=Mus mus | yes | no | 0.831 | 0.725 | 0.442 | 2e-69 | |
| P37111 | 407 | Aminoacylase-1 OS=Sus scr | yes | no | 0.814 | 0.712 | 0.439 | 3e-69 | |
| Q6PTT0 | 408 | Aminoacylase-1B OS=Rattus | yes | no | 0.806 | 0.703 | 0.442 | 7e-69 | |
| Q55DP8 | 408 | Aminoacylase-1 OS=Dictyos | yes | no | 0.817 | 0.713 | 0.441 | 1e-68 | |
| Q6AYS7 | 408 | Aminoacylase-1A OS=Rattus | yes | no | 0.831 | 0.725 | 0.436 | 2e-68 | |
| Q03154 | 408 | Aminoacylase-1 OS=Homo sa | yes | no | 0.806 | 0.703 | 0.439 | 2e-67 | |
| Q5RFB0 | 408 | Aminoacylase-1 OS=Pongo a | yes | no | 0.806 | 0.703 | 0.435 | 2e-67 | |
| Q55DL1 | 485 | Probable carboxypeptidase | no | no | 0.331 | 0.243 | 0.396 | 3e-17 | |
| Q55FR8 | 519 | Probable carboxypeptidase | no | no | 0.320 | 0.219 | 0.404 | 1e-16 | |
| Q08BT9 | 512 | Probable carboxypeptidase | no | no | 0.325 | 0.226 | 0.376 | 8e-14 |
| >sp|Q99JW2|ACY1_MOUSE Aminoacylase-1 OS=Mus musculus GN=Acy1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 135/305 (44%), Positives = 184/305 (60%), Gaps = 9/305 (2%)
Query: 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP 84
+S+ + FR YL+I T QPNPDY A F+ +A L L Q +E + +L WP
Sbjct: 7 ESEHPSVTLFRQYLRICTVQPNPDYGGAITFLEERARQLGLSCQKIEVVPGFVITVLTWP 66
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
G+NP LPSILLNSHTDVVP W H PF A DS+G I+ARGSQDMK V +QYLEA+R
Sbjct: 67 GTNPSLPSILLNSHTDVVPVFKEHWHHDPFEAFKDSEGYIYARGSQDMKSVSIQYLEAVR 126
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
RLK+ G + R+++++FVPDEE+GGH G E F F +L G LDEGLA+ T+ +
Sbjct: 127 RLKSEGHRFPRTIHMTFVPDEEVGGHKGMELFVKRPEFQALRAGFALDEGLANPTDAFTV 186
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAE 262
FY+ER PWW+ + + G PGH ++ +++A E L K I S+ FR + ++A LK E
Sbjct: 187 FYSERSPWWVRVTSTGKPGHASRFIEDTAAEKLHKVISSILAFREKERQRLQANPHLK-E 245
Query: 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASR 322
G V SVN+ L+ G N+ P+ A FD RV P D ++ E+++ A
Sbjct: 246 GAVTSVNLTKLEGGV------AYNVVPATMSASFDFRVAPDVDMKAFEKQLQRWCQEAGE 299
Query: 323 NMTFE 327
+TFE
Sbjct: 300 GVTFE 304
|
Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Mus musculus (taxid: 10090) EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 4 |
| >sp|P37111|ACY1_PIG Aminoacylase-1 OS=Sus scrofa GN=ACY1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 262 bits (670), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 173/296 (58%), Gaps = 6/296 (2%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR YL+I T QP PDY A F+ +A L L Q +E + +L WPG+NP L SI
Sbjct: 16 FRQYLRIRTVQPEPDYGAAVAFLEERARQLGLGCQKVEVVPGHVVTVLTWPGTNPTLSSI 75
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSHTDVVP WSH PF D+ G I+ RG+QDMKCV +QYLEA+RRLK G
Sbjct: 76 LLNSHTDVVPVFKEHWSHDPFEGFKDADGYIYGRGAQDMKCVSIQYLEAVRRLKVEGHHF 135
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWW 213
R+++++FVPDEE+GGH G E F F +L G LDEGLAS T+ + FY+ER PWW
Sbjct: 136 PRTIHMTFVPDEEVGGHQGMELFVKRPEFQALRAGFALDEGLASPTDAFTVFYSERSPWW 195
Query: 214 LVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFL 273
L + + G PGHG++ +++A E L K I S+ FR + +++ G V SVN+ L
Sbjct: 196 LRVTSTGKPGHGSRFIEDTAAEKLHKVINSILAFREKEKQRLQSNQLKPGAVTSVNLTML 255
Query: 274 KAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVV 329
+ G N+ P+ A FD RV P D ++ E ++ A +TFE V
Sbjct: 256 EGGV------AYNVVPATMSACFDFRVAPDVDLKAFEEQLQSWCQAAGEGVTFEFV 305
|
Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q6PTT0|ACY1B_RAT Aminoacylase-1B OS=Rattus norvegicus GN=Acy1b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (666), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 179/296 (60%), Gaps = 9/296 (3%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR YL+I T QP PDY A F A L L Q +E A + +L WPG+NP L SI
Sbjct: 16 FRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSI 75
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSHTDVVP WSH PF A DS+G I+ RG+QDMKCV +QYLEA++RLK G +
Sbjct: 76 LLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYTRGAQDMKCVSIQYLEAVKRLKVEGHRF 135
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWW 213
R+++++FVPDEE+GGH G E F H F++L G LDEGLA+ T+ + FY+ER PWW
Sbjct: 136 PRTIHMTFVPDEEVGGHQGMELFVQRHEFHALRAGFALDEGLANPTDAFTVFYSERSPWW 195
Query: 214 LVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSVNMA 271
+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SVN+
Sbjct: 196 VRVTSTGRPGHASRFMEDTAAEKLHKVVNSILAFREKEWQRLQSNPHLK-EGSVTSVNLT 254
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFE 327
L+ G N+ P+ A FD RV P D ++ E ++ A +TFE
Sbjct: 255 KLEGGV------AYNVVPATMSACFDFRVAPDVDMKAFEEQLQSWCQEAGEGVTFE 304
|
Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q55DP8|ACY1_DICDI Aminoacylase-1 OS=Dictyostelium discoideum GN=acy1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (665), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 187/301 (62%), Gaps = 10/301 (3%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR +L+I T P PDY +++KF++ +A+ ++ + P++L+K G P L ++
Sbjct: 13 FREFLKIRTDHPTPDYESSTKFLVEKAKEYNIPYEVYR-ETGTPIVLMKIEGLEPNLKTV 71
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSH DVVP+ W PF A D GNIF RG+QDMKCV MQ+LE RR+ SG +
Sbjct: 72 LLNSHVDVVPAVHDSWKVDPFSAWKDESGNIFGRGTQDMKCVCMQFLEVARRIVQSGQKL 131
Query: 154 VRSVYLSFVPDEEIGGH-DGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPW 212
R+++LSFVPDEEIGG G EKF + F LN+G+ LDEGLAS T D+ FY ER PW
Sbjct: 132 KRTLHLSFVPDEEIGGSGKGMEKFVYTEKFRQLNIGLCLDEGLASPTNDFTVFYGERAPW 191
Query: 213 WLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGL----KAEGEVVSV 268
W+ I A G GHG++ + +A+E L ++I + FR QF+ + G K G+V S+
Sbjct: 192 WVHITAVGNAGHGSRFIEGTAIEKLMRTINKMLAFRQEQFESLHHGQHECGKKLGDVTSL 251
Query: 269 NMAFLKAGTP--SPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTF 326
N+ LKAG P N F N+ P++AEAGFDIR+PPT + + +I +EW A ++F
Sbjct: 252 NLTVLKAGIPIDHSNNFSYNVIPTQAEAGFDIRIPPTVNLDQFLDQI-KEWT-AEEGLSF 309
Query: 327 E 327
+
Sbjct: 310 K 310
|
Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q6AYS7|ACY1A_RAT Aminoacylase-1A OS=Rattus norvegicus GN=Acy1a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 133/305 (43%), Positives = 185/305 (60%), Gaps = 9/305 (2%)
Query: 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP 84
+S+ + FR YL+I T QPNPDY +A F+ +A L L Q +E A + +L WP
Sbjct: 7 ESEHPSVTLFRQYLRICTVQPNPDYGSAVTFLEERARQLGLSCQKIEVAPGYVITVLTWP 66
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
G+NP L SILLNSHTDVVP W H PF A DS+G I+ARG+QDMK V +QYLEA+R
Sbjct: 67 GTNPLLHSILLNSHTDVVPVFKEHWHHDPFEAFKDSEGYIYARGAQDMKSVSIQYLEAVR 126
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
RLK+ G + R+++++FVPDEE+GGH G E F F +L G LDEGLA+ T+ +
Sbjct: 127 RLKSEGHRFPRTIHMTFVPDEEVGGHKGMELFVKRPEFQALRAGFALDEGLANPTDAFTV 186
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAE 262
FY+ER PWW+ + + G PGH ++ +++A E L K + S+ FR + ++A LK E
Sbjct: 187 FYSERSPWWIRVTSTGKPGHASRFIEDTAAEKLHKVVNSILAFREKERQRLQANPHLK-E 245
Query: 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASR 322
G V SVN+ L+ G N+ P+ A FD RV P D ++ E+++ A
Sbjct: 246 GAVTSVNLTKLEGGV------AYNVVPATMSACFDFRVAPDVDMKAFEKQLQSWCQEAGE 299
Query: 323 NMTFE 327
+TFE
Sbjct: 300 GVTFE 304
|
Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q03154|ACY1_HUMAN Aminoacylase-1 OS=Homo sapiens GN=ACY1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 178/296 (60%), Gaps = 9/296 (3%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR YL+I T QP PDY A F A L L Q +E A + +L WPG+NP L SI
Sbjct: 16 FRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSI 75
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSHTDVVP WSH PF A DS+G I+ARG+QDMKCV +QYLEA+RRLK G +
Sbjct: 76 LLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKVEGHRF 135
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWW 213
R+++++FVPDEE+GGH G E F F++L G LDEG+A+ T+ + FY+ER PWW
Sbjct: 136 PRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTDAFTVFYSERSPWW 195
Query: 214 LVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSVNMA 271
+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SVN+
Sbjct: 196 VRVTSTGRPGHASRFMEDTAAEKLHKVVNSILAFREKEWQRLQSNPHLK-EGSVTSVNLT 254
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFE 327
L+ G N+ P+ A FD RV P D ++ E ++ A +T E
Sbjct: 255 KLEGGV------AYNVIPATMSASFDFRVAPDVDFKAFEEQLQSWCQAAGEGVTLE 304
|
Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q5RFB0|ACY1_PONAB Aminoacylase-1 OS=Pongo abelii GN=ACY1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/296 (43%), Positives = 179/296 (60%), Gaps = 9/296 (3%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR YL+I T QP PDY A F +A L L Q +E A + +L WPG+NP L SI
Sbjct: 16 FRQYLRIRTVQPKPDYGAAVAFFEERARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSI 75
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSHTDVVP WSH PF A DS+G I+ARG+QDMKC+ +QYLEA+RRLK G +
Sbjct: 76 LLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCISIQYLEAVRRLKVEGHRF 135
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWW 213
R+++++FVPDEE+GGH G E F F++L G LDEG+A+ T+ + FY+ER PWW
Sbjct: 136 PRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTDAFTVFYSERSPWW 195
Query: 214 LVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSVNMA 271
+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SVN+
Sbjct: 196 VRVTSTGRPGHASRFMEDTAAEKLHKVVSSILAFREKEWQRLQSNPHLK-EGSVTSVNLT 254
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFE 327
L+ G N+ P+ A FD RV P D ++ E ++ A +T E
Sbjct: 255 KLEGGV------AYNVIPATMSASFDFRVAPDVDFKAFEEQLQSWCQAAGEGVTLE 304
|
Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Pongo abelii (taxid: 9601) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q55DL1|CBPS1_DICDI Probable carboxypeptidase S-like 1 OS=Dictyostelium discoideum GN=DDB_G0270582 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 75 NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKC 134
NK +L +W GS+ L +LLNSH DVVP S+W+ +P+G NI+ RGS D K
Sbjct: 88 NKYSLLFEWTGSDKTLKPLLLNSHYDVVPVTESEWTFNPWGE--IRNDNIYGRGSIDNKV 145
Query: 135 VGMQYLEAIRRLKASGF-QPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDE 193
+ M +E+I + A+ + QP+R++YL F DEE+GG +G A N + + DE
Sbjct: 146 IVMATMESIEAILANNYTQPIRTIYLCFGHDEELGGLNGHRMIARHFRENLVRAEAIFDE 205
Query: 194 G 194
G
Sbjct: 206 G 206
|
Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 7 EC: . EC: - |
| >sp|Q55FR8|CBPS2_DICDI Probable carboxypeptidase S-like 2 OS=Dictyostelium discoideum GN=DDB_G0267984 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 7/121 (5%)
Query: 79 ILLKWPGSNPQLPSILLNSHTDVVPSE-PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGM 137
++ W G + L ILL H DVVP+ KW+H PF H+D I+ RG+ D K M
Sbjct: 132 LVYNWKGLDESLKPILLAGHIDVVPTLFLDKWTHPPFSGHIDDT-YIWGRGTMDDKGSVM 190
Query: 138 QYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVG---IVLDEG 194
LE++ L + GF+P RS+Y +F DEE+GG++GA F + F++ +G +LDEG
Sbjct: 191 AILESVEDLLSQGFKPQRSIYFAFGHDEELGGNNGA--FNINKYFDTNEIGPFEFILDEG 248
Query: 195 L 195
L
Sbjct: 249 L 249
|
Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 7 EC: . EC: - |
| >sp|Q08BT9|P20D1_XENTR Probable carboxypeptidase PM20D1 OS=Xenopus tropicalis GN=pm20d1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 80 LLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQY 139
L K GS+ L +L +H DVVP+ P W PF + G I+ RG+ D K +
Sbjct: 116 LFKVQGSDHNLLPYMLLAHIDVVPAPPESWEVPPFSGE-ERDGYIYGRGTLDDKNCVIGI 174
Query: 140 LEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLA 196
L+++ L G +P RS Y+ DEEI GH GA+K + + + VLDEGLA
Sbjct: 175 LQSLEFLLKRGHKPRRSFYIGLGHDEEISGHKGAQKIVEKLQSQGVKLAFVLDEGLA 231
|
Xenopus tropicalis (taxid: 8364) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 7 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 356 | ||||||
| 224102765 | 448 | predicted protein [Populus trichocarpa] | 0.845 | 0.671 | 0.817 | 1e-147 | |
| 118486005 | 448 | unknown [Populus trichocarpa] | 0.845 | 0.671 | 0.817 | 1e-147 | |
| 225428336 | 466 | PREDICTED: aminoacylase-1-like [Vitis vi | 0.884 | 0.675 | 0.762 | 1e-144 | |
| 449444431 | 448 | PREDICTED: aminoacylase-1-like [Cucumis | 0.918 | 0.729 | 0.738 | 1e-142 | |
| 224132462 | 456 | predicted protein [Populus trichocarpa] | 0.848 | 0.662 | 0.781 | 1e-141 | |
| 30691732 | 433 | Peptidase M20/M25/M40 family protein [Ar | 0.862 | 0.709 | 0.765 | 1e-140 | |
| 30691729 | 430 | Peptidase M20/M25/M40 family protein [Ar | 0.859 | 0.711 | 0.767 | 1e-140 | |
| 227202560 | 400 | AT4G38220 [Arabidopsis thaliana] | 0.859 | 0.765 | 0.767 | 1e-140 | |
| 4467128 | 753 | putative protein [Arabidopsis thaliana] | 0.859 | 0.406 | 0.734 | 1e-137 | |
| 297797806 | 738 | hypothetical protein ARALYDRAFT_327784 [ | 0.859 | 0.414 | 0.761 | 1e-137 |
| >gi|224102765|ref|XP_002312793.1| predicted protein [Populus trichocarpa] gi|222849201|gb|EEE86748.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/301 (81%), Positives = 271/301 (90%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
D +II RF+ YLQI+T+QP P Y ++ F+++QA+ + LESQ++EF +NKPLILLKWPGS
Sbjct: 31 DAAIISRFQQYLQINTAQPTPQYQQSADFLISQAKFIGLESQSIEFVQNKPLILLKWPGS 90
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
+P LPSILLNSHTDVVP E KW+HHPFGAH+DS GNIFARGSQDMKCVGMQYLEAIRRL
Sbjct: 91 DPTLPSILLNSHTDVVPVEHHKWTHHPFGAHVDSHGNIFARGSQDMKCVGMQYLEAIRRL 150
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
K+SGF P+RSVYLSFVPDEEIGGHDGA KFADS +FNS+NVGIVLDEGLAS E+YR FY
Sbjct: 151 KSSGFVPLRSVYLSFVPDEEIGGHDGAAKFADSDIFNSMNVGIVLDEGLASPDENYRTFY 210
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266
AERCPWW+VIKA GAPGHGAKLYDNSAMENL KSIESVRRFRASQFDLVKAGLKAEGEV+
Sbjct: 211 AERCPWWMVIKATGAPGHGAKLYDNSAMENLLKSIESVRRFRASQFDLVKAGLKAEGEVI 270
Query: 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTF 326
SVNM FLKAGTPSP GFVMNLQPSEAEAGFDIRVPPT D ESLERRI EEWAP SRNMTF
Sbjct: 271 SVNMVFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERRIAEEWAPVSRNMTF 330
Query: 327 E 327
+
Sbjct: 331 Q 331
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118486005|gb|ABK94846.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/301 (81%), Positives = 271/301 (90%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
D +II RF+ YLQI+T+QP P Y ++ F+++QA+ + LESQ++EF +NKPLILLKWPGS
Sbjct: 31 DAAIISRFQQYLQINTAQPTPQYQQSADFLISQAKFIGLESQSIEFVQNKPLILLKWPGS 90
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
+P LPSILLNSHTDVVP E KW+HHPFGAH+DS GNIFARGSQDMKCVGMQYLEAIRRL
Sbjct: 91 DPTLPSILLNSHTDVVPVEHHKWTHHPFGAHVDSHGNIFARGSQDMKCVGMQYLEAIRRL 150
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
K+SGF P+RSVYLSFVPDEEIGGHDGA KFADS +FNS+NVGIVLDEGLAS E+YR FY
Sbjct: 151 KSSGFVPLRSVYLSFVPDEEIGGHDGAAKFADSDIFNSMNVGIVLDEGLASPDENYRTFY 210
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266
AERCPWW+VIKA GAPGHGAKLYDNSAMENL KSIESVRRFRASQFDLVKAGLKAEGEV+
Sbjct: 211 AERCPWWMVIKATGAPGHGAKLYDNSAMENLLKSIESVRRFRASQFDLVKAGLKAEGEVI 270
Query: 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTF 326
SVNM FLKAGTPSP GFVMNLQPSEAEAGFDIRVPPT D ESLERRI EEWAP SRNMTF
Sbjct: 271 SVNMVFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERRIAEEWAPVSRNMTF 330
Query: 327 E 327
+
Sbjct: 331 Q 331
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428336|ref|XP_002283140.1| PREDICTED: aminoacylase-1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/320 (76%), Positives = 279/320 (87%), Gaps = 5/320 (1%)
Query: 14 FYQLII----FSSPAKSDDS-IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQ 68
FY L I FS+ DDS I+ RF+ YLQI+T+QPNP+Y A+ FI++QA+++SL SQ
Sbjct: 28 FYALFILSLLFSTVGADDDSSIVSRFQRYLQINTAQPNPNYYEAADFIVSQAQSISLHSQ 87
Query: 69 TLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARG 128
TLEF K KP++LLKWPGSNP LPSILLNSHTDVVP+E KW+H PF AH+D G+I+ARG
Sbjct: 88 TLEFVKGKPIVLLKWPGSNPNLPSILLNSHTDVVPAEHHKWTHPPFDAHVDGNGDIYARG 147
Query: 129 SQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVG 188
SQDMKCVG+QYLEAIRRLK+SGFQP+R+VYLSFVPDEEIGGHDGAEKFADS F +NVG
Sbjct: 148 SQDMKCVGLQYLEAIRRLKSSGFQPLRTVYLSFVPDEEIGGHDGAEKFADSDEFKKMNVG 207
Query: 189 IVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFR 248
IVLDEGLAS E+YRAFYAER PWWLVI+A GAPGHGAKLYDN+AMEN+ KSIESVRRFR
Sbjct: 208 IVLDEGLASPNENYRAFYAERSPWWLVIRATGAPGHGAKLYDNTAMENILKSIESVRRFR 267
Query: 249 ASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAES 308
A+QFDLVK+GLK+EGEV+SVNM FLKAGTPSP GFVMNLQPSEAEAGFDIR+PPT D S
Sbjct: 268 AAQFDLVKSGLKSEGEVISVNMVFLKAGTPSPTGFVMNLQPSEAEAGFDIRIPPTADQVS 327
Query: 309 LERRIVEEWAPASRNMTFEV 328
LE+RI EEWAPASRNMTFE+
Sbjct: 328 LEKRIAEEWAPASRNMTFEL 347
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444431|ref|XP_004139978.1| PREDICTED: aminoacylase-1-like [Cucumis sativus] gi|449475686|ref|XP_004154523.1| PREDICTED: aminoacylase-1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/329 (73%), Positives = 279/329 (84%), Gaps = 2/329 (0%)
Query: 1 MRNRHRLLHICFVFYQLIIFSSPA--KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILA 58
++ H LL I +F+ L I +S S +II RF+ YLQI+T QP+P Y A+ FI++
Sbjct: 3 FKSLHFLLSIITLFFFLSISTSEQDPSSPSAIISRFQQYLQINTVQPSPQYYEAADFIIS 62
Query: 59 QAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHL 118
QA++LSLES T+EF + KPL++LKWPGSNP+LPSILLNSHTDVVP+E KW+H P GAH+
Sbjct: 63 QAKSLSLESHTIEFVEGKPLVILKWPGSNPELPSILLNSHTDVVPAEHKKWTHPPLGAHI 122
Query: 119 DSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD 178
DS GNI+ARGSQDMKCVGMQYLEAIRRLKASGFQP+RSVYLSFVPDEEIGGH GAEKFA+
Sbjct: 123 DSHGNIYARGSQDMKCVGMQYLEAIRRLKASGFQPLRSVYLSFVPDEEIGGHGGAEKFAE 182
Query: 179 SHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLF 238
S F LNV IVLDEGL S E+YR FY E+ PWWLVIKA GAPGHGA+LYDN+A+ENLF
Sbjct: 183 SDEFKKLNVAIVLDEGLPSPGENYRVFYGEKSPWWLVIKAVGAPGHGARLYDNTALENLF 242
Query: 239 KSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298
KSIE+VRRFRASQFDL+KAGLK EG+VVSVNM FLK+G PSP GFVMNLQPSEAEAGFD+
Sbjct: 243 KSIETVRRFRASQFDLIKAGLKTEGDVVSVNMVFLKSGIPSPTGFVMNLQPSEAEAGFDV 302
Query: 299 RVPPTTDAESLERRIVEEWAPASRNMTFE 327
RVPPTT+ ESLERRI EEWAPASRNMTFE
Sbjct: 303 RVPPTTNPESLERRIAEEWAPASRNMTFE 331
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132462|ref|XP_002328282.1| predicted protein [Populus trichocarpa] gi|222837797|gb|EEE76162.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/302 (78%), Positives = 268/302 (88%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
D +II RF+ YLQI+T+QP+P Y ++ F+++QA+++ LE Q++EFA+NKPL+LLKWPGS
Sbjct: 36 DAAIISRFQQYLQINTAQPSPLYQQSADFLISQAKSIGLEFQSIEFAQNKPLVLLKWPGS 95
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
+P LPSILLNSHTDVVP E KW+HHPFGAH+DS GNIFARGSQDMKCVGMQYLEAIRRL
Sbjct: 96 DPTLPSILLNSHTDVVPVEQHKWAHHPFGAHVDSDGNIFARGSQDMKCVGMQYLEAIRRL 155
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
K+SGF P+RSVYLSFVPDEEIG DGA+KFADS +FNS+NVGI LDEGLAS +E+YR FY
Sbjct: 156 KSSGFHPLRSVYLSFVPDEEIGSCDGAKKFADSDIFNSMNVGIALDEGLASPSENYRTFY 215
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266
AER PWWLVIKA G PGHGAKLYDNSAMENL KS+ES+RRFRASQFDLVKAGLKAEGEV
Sbjct: 216 AERNPWWLVIKATGPPGHGAKLYDNSAMENLLKSVESIRRFRASQFDLVKAGLKAEGEVF 275
Query: 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTF 326
SVN FLKAGTPSP GFVMNLQPSEAEAGFDIRVPPT D ESLER+ EEWAP SRNMTF
Sbjct: 276 SVNTVFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERQFAEEWAPVSRNMTF 335
Query: 327 EV 328
++
Sbjct: 336 QL 337
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30691732|ref|NP_849516.1| Peptidase M20/M25/M40 family protein [Arabidopsis thaliana] gi|332661495|gb|AEE86895.1| Peptidase M20/M25/M40 family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 235/307 (76%), Positives = 269/307 (87%)
Query: 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILL 81
S DD+I+ RF+ YL+I+T QPNP+Y A FI++QA+ LSLESQT+EF K KPL+LL
Sbjct: 16 SAVAGDDAIVSRFQEYLRINTVQPNPEYYKAVDFIISQAKPLSLESQTIEFVKGKPLLLL 75
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLE 141
KW GS+P LP+ LLNSHTDVVP E SKW+HHP AH+D G+I+ARGSQDMKCVGMQYLE
Sbjct: 76 KWVGSDPTLPAFLLNSHTDVVPFEDSKWTHHPLQAHMDHHGDIYARGSQDMKCVGMQYLE 135
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
AIR+L+ASGF+P+RSVYLSFVPDEEIGGHDGAEKFA+S +F SLN+ IVLDEGL S TE
Sbjct: 136 AIRKLQASGFKPLRSVYLSFVPDEEIGGHDGAEKFAESQLFKSLNIAIVLDEGLPSPTES 195
Query: 202 YRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKA 261
YR FY ER PWWLVIKA+G PGHGAKLYDNSAMENL KSIES+RRFRASQFDL+KAG A
Sbjct: 196 YRVFYGERSPWWLVIKAKGPPGHGAKLYDNSAMENLLKSIESIRRFRASQFDLLKAGGIA 255
Query: 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS 321
EG+VVSVNMAFLKAGTPSP GFVMNLQPSEAEAGFDIRVPP+ DAE+LERR+VEEWAPA+
Sbjct: 256 EGDVVSVNMAFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPSVDAEALERRLVEEWAPAA 315
Query: 322 RNMTFEV 328
RNM+FE+
Sbjct: 316 RNMSFEL 322
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30691729|ref|NP_568036.2| Peptidase M20/M25/M40 family protein [Arabidopsis thaliana] gi|18650600|gb|AAL75900.1| AT4g38220/F20D10_340 [Arabidopsis thaliana] gi|332661494|gb|AEE86894.1| Peptidase M20/M25/M40 family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 235/306 (76%), Positives = 268/306 (87%)
Query: 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILL 81
S DD+I+ RF+ YL+I+T QPNP+Y A FI++QA+ LSLESQT+EF K KPL+LL
Sbjct: 16 SAVAGDDAIVSRFQEYLRINTVQPNPEYYKAVDFIISQAKPLSLESQTIEFVKGKPLLLL 75
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLE 141
KW GS+P LP+ LLNSHTDVVP E SKW+HHP AH+D G+I+ARGSQDMKCVGMQYLE
Sbjct: 76 KWVGSDPTLPAFLLNSHTDVVPFEDSKWTHHPLQAHMDHHGDIYARGSQDMKCVGMQYLE 135
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
AIR+L+ASGF+P+RSVYLSFVPDEEIGGHDGAEKFA+S +F SLN+ IVLDEGL S TE
Sbjct: 136 AIRKLQASGFKPLRSVYLSFVPDEEIGGHDGAEKFAESQLFKSLNIAIVLDEGLPSPTES 195
Query: 202 YRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKA 261
YR FY ER PWWLVIKA+G PGHGAKLYDNSAMENL KSIES+RRFRASQFDL+KAG A
Sbjct: 196 YRVFYGERSPWWLVIKAKGPPGHGAKLYDNSAMENLLKSIESIRRFRASQFDLLKAGGIA 255
Query: 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS 321
EG+VVSVNMAFLKAGTPSP GFVMNLQPSEAEAGFDIRVPP+ DAE+LERR+VEEWAPA+
Sbjct: 256 EGDVVSVNMAFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPSVDAEALERRLVEEWAPAA 315
Query: 322 RNMTFE 327
RNM+FE
Sbjct: 316 RNMSFE 321
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|227202560|dbj|BAH56753.1| AT4G38220 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust.
Identities = 235/306 (76%), Positives = 268/306 (87%)
Query: 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILL 81
S DD+I+ RF+ YL+I+T QPNP+Y A FI++QA+ LSLESQT+EF K KPL+LL
Sbjct: 16 SAVAGDDAIVSRFQEYLRINTVQPNPEYYKAVDFIISQAKPLSLESQTIEFVKGKPLLLL 75
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLE 141
KW GS+P LP+ LLNSHTDVVP E SKW+HHP AH+D G+I+ARGSQDMKCVGMQYLE
Sbjct: 76 KWVGSDPTLPAFLLNSHTDVVPFEDSKWTHHPLQAHMDHHGDIYARGSQDMKCVGMQYLE 135
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
AIR+L+ASGF+P+RSVYLSFVPDEEIGGHDGAEKFA+S +F SLN+ IVLDEGL S TE
Sbjct: 136 AIRKLQASGFKPLRSVYLSFVPDEEIGGHDGAEKFAESQLFKSLNIAIVLDEGLPSPTES 195
Query: 202 YRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKA 261
YR FY ER PWWLVIKA+G PGHGAKLYDNSAMENL KSIES+RRFRASQFDL+KAG A
Sbjct: 196 YRVFYGERSPWWLVIKAKGPPGHGAKLYDNSAMENLLKSIESIRRFRASQFDLLKAGGIA 255
Query: 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS 321
EG+VVSVNMAFLKAGTPSP GFVMNLQPSEAEAGFDIRVPP+ DAE+LERR+VEEWAPA+
Sbjct: 256 EGDVVSVNMAFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPSVDAEALERRLVEEWAPAA 315
Query: 322 RNMTFE 327
RNM+FE
Sbjct: 316 RNMSFE 321
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4467128|emb|CAB37562.1| putative protein [Arabidopsis thaliana] gi|7270806|emb|CAB80487.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/320 (73%), Positives = 268/320 (83%), Gaps = 14/320 (4%)
Query: 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILL 81
S DD+I+ RF+ YL+I+T QPNP+Y A FI++QA+ LSLESQT+EF K KPL+LL
Sbjct: 16 SAVAGDDAIVSRFQEYLRINTVQPNPEYYKAVDFIISQAKPLSLESQTIEFVKGKPLLLL 75
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLE 141
KW GS+P LP+ LLNSHTDVVP E SKW+HHP AH+D G+I+ARGSQDMKCVGMQYLE
Sbjct: 76 KWVGSDPTLPAFLLNSHTDVVPFEDSKWTHHPLQAHMDHHGDIYARGSQDMKCVGMQYLE 135
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
AIR+L+ASGF+P+RSVYLSFVPDEEIGGHDGAEKFA+S +F SLN+ IVLDEGL S TE
Sbjct: 136 AIRKLQASGFKPLRSVYLSFVPDEEIGGHDGAEKFAESQLFKSLNIAIVLDEGLPSPTES 195
Query: 202 YRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKA 261
YR FY ER PWWLVIKA+G PGHGAKLYDNSAMENL KSIES+RRFRASQFDL+KAG A
Sbjct: 196 YRVFYGERSPWWLVIKAKGPPGHGAKLYDNSAMENLLKSIESIRRFRASQFDLLKAGGIA 255
Query: 262 EGEVVSVNMAFLKAGTPSPN--------------GFVMNLQPSEAEAGFDIRVPPTTDAE 307
EG+VVSVNMAFLKAGTPSP GFVMNLQPSEAEAGFDIRVPP+ DAE
Sbjct: 256 EGDVVSVNMAFLKAGTPSPTVTTFFFIHIMYDSKGFVMNLQPSEAEAGFDIRVPPSVDAE 315
Query: 308 SLERRIVEEWAPASRNMTFE 327
+LERR+VEEWAPA+RNM+FE
Sbjct: 316 ALERRLVEEWAPAARNMSFE 335
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797806|ref|XP_002866787.1| hypothetical protein ARALYDRAFT_327784 [Arabidopsis lyrata subsp. lyrata] gi|297312623|gb|EFH43046.1| hypothetical protein ARALYDRAFT_327784 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 233/306 (76%), Positives = 261/306 (85%)
Query: 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILL 81
S DD+II RF+ YL+I+T QPNPDY A FI +QA+ LSLESQT+E K KPL+LL
Sbjct: 19 SAVAGDDAIISRFQEYLRINTVQPNPDYYKAVDFINSQAKPLSLESQTIELVKGKPLLLL 78
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLE 141
KW GS+P LP+ LLNSHTDVVP E SKW+HHP AH+D G+I+ARGSQDMKCVG+QYLE
Sbjct: 79 KWVGSDPTLPAFLLNSHTDVVPFEDSKWTHHPLQAHIDHHGHIYARGSQDMKCVGLQYLE 138
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
AIR+L+ASGFQP+RSVYLSFVPDEEIGGHDGA KF +S F SLN+ IVLDEGL S TE
Sbjct: 139 AIRKLQASGFQPLRSVYLSFVPDEEIGGHDGAVKFVESQFFKSLNIAIVLDEGLPSPTES 198
Query: 202 YRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKA 261
YR FY ER PWWLVIKA+G PGHGAKLYDNSAMENL KSIES+RRFRASQFDL+KAG
Sbjct: 199 YRVFYGERSPWWLVIKAKGPPGHGAKLYDNSAMENLLKSIESIRRFRASQFDLLKAGGIG 258
Query: 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS 321
EG+VVSVNMAFLKAGTPSP GFVMNLQPSEAEAGFDIRVPP DAE+LERR+VEEWAPA+
Sbjct: 259 EGDVVSVNMAFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPNVDAEALERRLVEEWAPAA 318
Query: 322 RNMTFE 327
RNM+FE
Sbjct: 319 RNMSFE 324
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 356 | ||||||
| TAIR|locus:2120958 | 433 | AQI "aquaporin interactor" [Ar | 0.898 | 0.739 | 0.739 | 6.6e-129 | |
| TAIR|locus:2194884 | 438 | AT1G44820 [Arabidopsis thalian | 0.904 | 0.735 | 0.546 | 6.4e-99 | |
| TAIR|locus:2205846 | 435 | AT1G44180 [Arabidopsis thalian | 0.898 | 0.735 | 0.565 | 5.2e-97 | |
| ZFIN|ZDB-GENE-040426-755 | 420 | acy1 "aminoacylase 1" [Danio r | 0.828 | 0.702 | 0.421 | 1.2e-65 | |
| MGI|MGI:87913 | 408 | Acy1 "aminoacylase 1" [Mus mus | 0.828 | 0.723 | 0.444 | 2.5e-65 | |
| FB|FBgn0039049 | 413 | CG6726 [Drosophila melanogaste | 0.811 | 0.699 | 0.464 | 1.4e-64 | |
| UNIPROTKB|F1MR63 | 501 | ACY1 "Uncharacterized protein" | 0.803 | 0.570 | 0.451 | 1.4e-64 | |
| RGD|2030 | 408 | Acy1 "aminoacylase 1" [Rattus | 0.803 | 0.700 | 0.444 | 2.3e-64 | |
| DICTYBASE|DDB_G0270562 | 408 | acy1 "N-acyl-L-amino-acid amid | 0.817 | 0.713 | 0.441 | 3.7e-64 | |
| UNIPROTKB|Q6AYS7 | 408 | Acy1a "Aminoacylase-1A" [Rattu | 0.828 | 0.723 | 0.437 | 3.7e-64 |
| TAIR|locus:2120958 AQI "aquaporin interactor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
Identities = 238/322 (73%), Positives = 276/322 (85%)
Query: 7 LLHICFVFYQLIIFSSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLE 66
LL + V +++ S DD+I+ RF+ YL+I+T QPNP+Y A FI++QA+ LSLE
Sbjct: 3 LLRLLLVV--VVLHLSAVAGDDAIVSRFQEYLRINTVQPNPEYYKAVDFIISQAKPLSLE 60
Query: 67 SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFA 126
SQT+EF K KPL+LLKW GS+P LP+ LLNSHTDVVP E SKW+HHP AH+D G+I+A
Sbjct: 61 SQTIEFVKGKPLLLLKWVGSDPTLPAFLLNSHTDVVPFEDSKWTHHPLQAHMDHHGDIYA 120
Query: 127 RGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186
RGSQDMKCVGMQYLEAIR+L+ASGF+P+RSVYLSFVPDEEIGGHDGAEKFA+S +F SLN
Sbjct: 121 RGSQDMKCVGMQYLEAIRKLQASGFKPLRSVYLSFVPDEEIGGHDGAEKFAESQLFKSLN 180
Query: 187 VGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRR 246
+ IVLDEGL S TE YR FY ER PWWLVIKA+G PGHGAKLYDNSAMENL KSIES+RR
Sbjct: 181 IAIVLDEGLPSPTESYRVFYGERSPWWLVIKAKGPPGHGAKLYDNSAMENLLKSIESIRR 240
Query: 247 FRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDA 306
FRASQFDL+KAG AEG+VVSVNMAFLKAGTPSP GFVMNLQPSEAEAGFDIRVPP+ DA
Sbjct: 241 FRASQFDLLKAGGIAEGDVVSVNMAFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPSVDA 300
Query: 307 ESLERRIVEEWAPASRNMTFEV 328
E+LERR+VEEWAPA+RNM+FE+
Sbjct: 301 EALERRLVEEWAPAARNMSFEL 322
|
|
| TAIR|locus:2194884 AT1G44820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 176/322 (54%), Positives = 237/322 (73%)
Query: 7 LLHICFVFYQLIIFSSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLE 66
LL +F + S + +D+ I RF+ YL+ +T+ PNP+YT F++ QA+++ L
Sbjct: 6 LLWTLIIFSIIFSLQSSSSEEDTPITRFQQYLRFNTAHPNPNYTAPISFLINQAQSIGLT 65
Query: 67 SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFA 126
++T+EF KP++L+ W GSNP LPSIL NSH D VP+E KW++ PF AH G+I+A
Sbjct: 66 TKTIEFISGKPILLITWLGSNPNLPSILFNSHLDSVPAESEKWTYPPFSAHKTIDGHIYA 125
Query: 127 RGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186
RG+QD KC+G+QYLE+IR LK+ GF P+R++++S+VP+EEIGG DG KFA S F LN
Sbjct: 126 RGAQDDKCIGVQYLESIRNLKSRGFSPLRTIHISYVPEEEIGGFDGMMKFAASSEFKDLN 185
Query: 187 VGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRR 246
+G +DEG A+ +++R FYA+R PW VIKA G PGHGAKLYDNSAMENL KS+E + R
Sbjct: 186 LGFAMDEGQANPGDEFRVFYADRVPWHFVIKAEGIPGHGAKLYDNSAMENLMKSVELISR 245
Query: 247 FRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDA 306
FR SQFD VKAG A EV+SVN +LKAGTP+ GFVMN+QPSEAEAG+D+R+PP D
Sbjct: 246 FRESQFDFVKAGKAAYSEVISVNPVYLKAGTPTTTGFVMNMQPSEAEAGYDLRLPPMADP 305
Query: 307 ESLERRIVEEWAPASRNMTFEV 328
+ +++RI EEWAP+ RNMT+ +
Sbjct: 306 DVMKKRIAEEWAPSIRNMTYSI 327
|
|
| TAIR|locus:2205846 AT1G44180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
Identities = 182/322 (56%), Positives = 232/322 (72%)
Query: 7 LLHICFVFYQLIIFSSPAKSD--DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALS 64
LL F+F + S +K + D+ I RF+ YL+ +T+ PNP+YT F+L QA ++
Sbjct: 6 LLWTLFLFSFIFSLQSHSKEEEEDTPITRFQQYLRFNTAHPNPNYTAPISFLLDQARSIG 65
Query: 65 LESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNI 124
L S+T+EF KP++LL W GSN L SIL NSH D VP+E KW H PF AH G+I
Sbjct: 66 LTSRTIEFVPGKPVLLLTWLGSNLNLSSILFNSHLDSVPAESEKWIHPPFSAHRTIDGHI 125
Query: 125 FARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184
+ARG+QD KC+G+QYLEAIR LK+ F P+R++++S+VP+EEIGG G KFA S F
Sbjct: 126 YARGAQDDKCIGVQYLEAIRNLKSRSFSPLRTIHISYVPEEEIGGFGGMMKFAASSEFKD 185
Query: 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESV 244
LN+G V+DEG AS +++R FYAER PW L I+A G PGHGAKLYDNSAMENL KS+E +
Sbjct: 186 LNLGFVMDEGQASPGDEFRVFYAERTPWHLAIRANGMPGHGAKLYDNSAMENLMKSVELI 245
Query: 245 RRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTT 304
RFR SQFD VKAG A EV+SVN +LKAGTPS GFVMN+QPSEAE G+D+R+PP
Sbjct: 246 SRFRESQFDFVKAGKAANSEVISVNPVYLKAGTPSTTGFVMNMQPSEAEVGYDLRLPPMA 305
Query: 305 DAESLERRIVEEWAPASRNMTF 326
D +L++RI EEWAP+ RNMT+
Sbjct: 306 DPVALKKRIAEEWAPSIRNMTY 327
|
|
| ZFIN|ZDB-GENE-040426-755 acy1 "aminoacylase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 128/304 (42%), Positives = 186/304 (61%)
Query: 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPG 85
++D + FR YL++ T P PDY A KF+ AE L+L + +E + + ++ W G
Sbjct: 20 AEDPSVTLFREYLRLKTVHPEPDYDAALKFLERMAEELALPMKKVEVCPGRVVAIISWIG 79
Query: 86 SNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR 145
S P+L S++LNSHTDVVP W HHPF A D+ GNI+ARG+QDMK V +QY+EAIRR
Sbjct: 80 SRPELKSVVLNSHTDVVPVYEEHWEHHPFAAVKDADGNIYARGAQDMKSVTIQYIEAIRR 139
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAF 205
LKA+G + R+++L+FVPDEE+GGH G E F F LN+G LDEGLA+ T Y F
Sbjct: 140 LKAAGKRFSRTIHLTFVPDEEVGGHKGMETFVKHPEFQKLNMGFALDEGLANPTNAYTVF 199
Query: 206 YAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG-LKAEGE 264
Y ER PWW+ ++ G+PGHG++ +N+A E L + I S FR + + G+
Sbjct: 200 YGERNPWWITVRCPGSPGHGSRFVENTAAEKLRRVINSFLEFREKEKQRLNTSECFTLGD 259
Query: 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA-PASRN 323
V ++NM +K G N+ P+E + FD+R+PPT + + E +I + W A +
Sbjct: 260 VTTINMTMVKGGV------AYNVVPAEMDVSFDLRIPPTVNLQEFEEKI-KVWCREAGED 312
Query: 324 MTFE 327
+T++
Sbjct: 313 VTYD 316
|
|
| MGI|MGI:87913 Acy1 "aminoacylase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 136/306 (44%), Positives = 186/306 (60%)
Query: 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP 84
+S+ + FR YL+I T QPNPDY A F+ +A L L Q +E + +L WP
Sbjct: 7 ESEHPSVTLFRQYLRICTVQPNPDYGGAITFLEERARQLGLSCQKIEVVPGFVITVLTWP 66
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
G+NP LPSILLNSHTDVVP W H PF A DS+G I+ARGSQDMK V +QYLEA+R
Sbjct: 67 GTNPSLPSILLNSHTDVVPVFKEHWHHDPFEAFKDSEGYIYARGSQDMKSVSIQYLEAVR 126
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
RLK+ G + R+++++FVPDEE+GGH G E F F +L G LDEGLA+ T+ +
Sbjct: 127 RLKSEGHRFPRTIHMTFVPDEEVGGHKGMELFVKRPEFQALRAGFALDEGLANPTDAFTV 186
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAE 262
FY+ER PWW+ + + G PGH ++ +++A E L K I S+ FR + ++A LK E
Sbjct: 187 FYSERSPWWVRVTSTGKPGHASRFIEDTAAEKLHKVISSILAFREKERQRLQANPHLK-E 245
Query: 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-AS 321
G V SVN+ L+ G N+ P+ A FD RV P D ++ E+++ + W A
Sbjct: 246 GAVTSVNLTKLEGGV------AYNVVPATMSASFDFRVAPDVDMKAFEKQL-QRWCQEAG 298
Query: 322 RNMTFE 327
+TFE
Sbjct: 299 EGVTFE 304
|
|
| FB|FBgn0039049 CG6726 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 139/299 (46%), Positives = 184/299 (61%)
Query: 22 SPAK-SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTL-EFAKNKPLI 79
S AK ++ I+ FR YL+I T PN DYT ++F+ QA +L L + + + P++
Sbjct: 14 STAKWENNEEIKIFREYLRIPTVHPNVDYTVCTEFLKRQAASLDLPVEVIYPVNEQNPVV 73
Query: 80 LLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQY 139
+LKW GS P+LPSI+LNSHTDVVP KW+H PF A LD++G IFARGSQDMKCVG QY
Sbjct: 74 VLKWQGSQPELPSIILNSHTDVVPVFEEKWTHGPFSADLDAEGRIFARGSQDMKCVGTQY 133
Query: 140 LEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTT 199
L A+R LKASG+QP R++YL++VPDEE+GGH G + S F LNVG DEG++S
Sbjct: 134 LGAVRALKASGYQPKRTIYLTYVPDEEVGGHLGMRELVKSDYFKKLNVGFSFDEGISSAD 193
Query: 200 EDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGL 259
E Y +YAER W L K G GHG+ L N+A E L + + FR SQ +
Sbjct: 194 ETYALYYAERTLWHLRFKISGTAGHGSLLLPNTAGEKLNYVVGKMMEFRKSQVQKLADDS 253
Query: 260 KAE-GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEW 317
E G+V +VN+ L+ G S N+ P EA FDIR+ T D + E++I +W
Sbjct: 254 SLEIGDVTTVNLTQLRGGVQS------NVVPPLLEAVFDIRIAVTVDIPAFEKQI-RDW 305
|
|
| UNIPROTKB|F1MR63 ACY1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 134/297 (45%), Positives = 183/297 (61%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR YL+I T QP PDY A F +A L L Q +E A + + +L WPG+NP+L S+
Sbjct: 109 FRQYLRIRTLQPEPDYGAAVAFFEERALQLGLGCQKVEVAPGRVVTVLTWPGTNPKLSSV 168
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSHTDVVP WSH PF A D+ G I+ RG+QDMKCV +QYLEA+RRLKA G
Sbjct: 169 LLNSHTDVVPVFQEYWSHDPFEAFKDADGYIYGRGAQDMKCVSIQYLEAVRRLKAEGHHF 228
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWW 213
R+++L+FVPDEEIGGH G E F F +L G LDEGLA+ T+ + FY+ER PWW
Sbjct: 229 PRTIHLTFVPDEEIGGHQGMELFVKRPEFQALRAGFALDEGLANPTDAFTVFYSERSPWW 288
Query: 214 LVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSVNMA 271
+ + + G PGHG++ +++A E L K + S+ FR + +++ LK EG V SVN+
Sbjct: 289 VRVTSTGKPGHGSRFIEDTAAEKLHKVVSSILAFREKERQRLQSDPQLK-EGAVTSVNLT 347
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS-RNMTFE 327
L+ G N+ P+ A FD RV P D ++ E ++ ++W A+ +TFE
Sbjct: 348 ILEGGV------AYNVVPATMSASFDFRVAPDVDLKAFEGQL-QDWCQAAGEGVTFE 397
|
|
| RGD|2030 Acy1 "aminoacylase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 132/297 (44%), Positives = 181/297 (60%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR YL+I T QP PDY A F A L L Q +E A + +L WPG+NP L SI
Sbjct: 16 FRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSI 75
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSHTDVVP WSH PF A DS+G I+ RG+QDMKCV +QYLEA++RLK G +
Sbjct: 76 LLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYTRGAQDMKCVSIQYLEAVKRLKVEGHRF 135
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWW 213
R+++++FVPDEE+GGH G E F H F++L G LDEGLA+ T+ + FY+ER PWW
Sbjct: 136 PRTIHMTFVPDEEVGGHQGMELFVQRHEFHALRAGFALDEGLANPTDAFTVFYSERSPWW 195
Query: 214 LVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSVNMA 271
+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SVN+
Sbjct: 196 VRVTSTGRPGHASRFMEDTAAEKLHKVVNSILAFREKEWQRLQSNPHLK-EGSVTSVNLT 254
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFE 327
L+ G N+ P+ A FD RV P D ++ E ++ + W A +TFE
Sbjct: 255 KLEGGV------AYNVVPATMSACFDFRVAPDVDMKAFEEQL-QSWCQEAGEGVTFE 304
|
|
| DICTYBASE|DDB_G0270562 acy1 "N-acyl-L-amino-acid amidohydrolase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 133/301 (44%), Positives = 187/301 (62%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR +L+I T P PDY +++KF++ +A+ ++ + P++L+K G P L ++
Sbjct: 13 FREFLKIRTDHPTPDYESSTKFLVEKAKEYNIPYEVYR-ETGTPIVLMKIEGLEPNLKTV 71
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSH DVVP+ W PF A D GNIF RG+QDMKCV MQ+LE RR+ SG +
Sbjct: 72 LLNSHVDVVPAVHDSWKVDPFSAWKDESGNIFGRGTQDMKCVCMQFLEVARRIVQSGQKL 131
Query: 154 VRSVYLSFVPDEEIGGHD-GAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPW 212
R+++LSFVPDEEIGG G EKF + F LN+G+ LDEGLAS T D+ FY ER PW
Sbjct: 132 KRTLHLSFVPDEEIGGSGKGMEKFVYTEKFRQLNIGLCLDEGLASPTNDFTVFYGERAPW 191
Query: 213 WLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGL----KAEGEVVSV 268
W+ I A G GHG++ + +A+E L ++I + FR QF+ + G K G+V S+
Sbjct: 192 WVHITAVGNAGHGSRFIEGTAIEKLMRTINKMLAFRQEQFESLHHGQHECGKKLGDVTSL 251
Query: 269 NMAFLKAGTP--SPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTF 326
N+ LKAG P N F N+ P++AEAGFDIR+PPT + + +I +EW A ++F
Sbjct: 252 NLTVLKAGIPIDHSNNFSYNVIPTQAEAGFDIRIPPTVNLDQFLDQI-KEWT-AEEGLSF 309
Query: 327 E 327
+
Sbjct: 310 K 310
|
|
| UNIPROTKB|Q6AYS7 Acy1a "Aminoacylase-1A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 134/306 (43%), Positives = 187/306 (61%)
Query: 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP 84
+S+ + FR YL+I T QPNPDY +A F+ +A L L Q +E A + +L WP
Sbjct: 7 ESEHPSVTLFRQYLRICTVQPNPDYGSAVTFLEERARQLGLSCQKIEVAPGYVITVLTWP 66
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
G+NP L SILLNSHTDVVP W H PF A DS+G I+ARG+QDMK V +QYLEA+R
Sbjct: 67 GTNPLLHSILLNSHTDVVPVFKEHWHHDPFEAFKDSEGYIYARGAQDMKSVSIQYLEAVR 126
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
RLK+ G + R+++++FVPDEE+GGH G E F F +L G LDEGLA+ T+ +
Sbjct: 127 RLKSEGHRFPRTIHMTFVPDEEVGGHKGMELFVKRPEFQALRAGFALDEGLANPTDAFTV 186
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAE 262
FY+ER PWW+ + + G PGH ++ +++A E L K + S+ FR + ++A LK E
Sbjct: 187 FYSERSPWWIRVTSTGKPGHASRFIEDTAAEKLHKVVNSILAFREKERQRLQANPHLK-E 245
Query: 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-AS 321
G V SVN+ L+ G N+ P+ A FD RV P D ++ E+++ + W A
Sbjct: 246 GAVTSVNLTKLEGGV------AYNVVPATMSACFDFRVAPDVDMKAFEKQL-QSWCQEAG 298
Query: 322 RNMTFE 327
+TFE
Sbjct: 299 EGVTFE 304
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_Genewise1_v1.C_LG_IX0129 | SubName- Full=Putative uncharacterized protein; (449 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.XI.2500.1 | ornithine-delta-aminotransferase (EC-2.6.1.13) (379 aa) | • | 0.899 | ||||||||
| gw1.V.1952.1 | annotation not avaliable (202 aa) | • | 0.899 | ||||||||
| gw1.V.1402.1 | SubName- Full=Putative uncharacterized protein; (326 aa) | • | 0.899 | ||||||||
| fgenesh4_pm.C_LG_XVII000038 | SubName- Full=Putative uncharacterized protein; (398 aa) | • | 0.899 | ||||||||
| fgenesh4_pg.C_LG_V000356 | acetylornithine transaminase (EC-2.6.1.11) (394 aa) | • | 0.899 | ||||||||
| fgenesh4_pg.C_LG_II000144 | hypothetical protein (381 aa) | • | 0.899 | ||||||||
| eugene3.00021348 | arginase (EC-3.5.3.1) (338 aa) | • | 0.899 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 356 | |||
| cd05646 | 391 | cd05646, M20_AcylaseI_like, M20 Aminoacylase-I lik | 1e-177 | |
| TIGR01880 | 400 | TIGR01880, Ac-peptdase-euk, N-acyl-L-amino-acid am | 1e-167 | |
| cd05675 | 426 | cd05675, M20_yscS_like, M20 Peptidase, carboxypept | 1e-43 | |
| cd08659 | 365 | cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylo | 2e-35 | |
| PRK07906 | 426 | PRK07906, PRK07906, hypothetical protein; Provisio | 2e-33 | |
| cd05674 | 441 | cd05674, M20_yscS, M20 Peptidase, carboxypeptidase | 3e-33 | |
| COG0624 | 409 | COG0624, ArgE, Acetylornithine deacetylase/Succiny | 4e-31 | |
| PRK08262 | 486 | PRK08262, PRK08262, hypothetical protein; Provisio | 4e-29 | |
| pfam01546 | 310 | pfam01546, Peptidase_M20, Peptidase family M20/M25 | 7e-28 | |
| cd03873 | 237 | cd03873, Zinc_peptidase_like, Zinc peptidases M18, | 1e-21 | |
| TIGR01910 | 375 | TIGR01910, DapE-ArgE, acetylornithine deacetylase | 1e-20 | |
| PRK08651 | 394 | PRK08651, PRK08651, succinyl-diaminopimelate desuc | 2e-20 | |
| cd03895 | 399 | cd03895, M20_ArgE_DapE_like2, M20 Peptidases with | 3e-18 | |
| cd08011 | 390 | cd08011, M20_ArgE_DapE_like6, M20 Peptidases with | 7e-17 | |
| PRK09133 | 472 | PRK09133, PRK09133, hypothetical protein; Provisio | 4e-14 | |
| PRK06837 | 427 | PRK06837, PRK06837, acetylornithine deacetylase; P | 3e-12 | |
| PRK06915 | 422 | PRK06915, PRK06915, acetylornithine deacetylase; V | 8e-12 | |
| cd05650 | 393 | cd05650, M20_ArgE_DapE_like1, M20 Peptidases with | 7e-11 | |
| cd03894 | 372 | cd03894, M20_ArgE, M20 Peptidase acetylornithine d | 8e-11 | |
| cd05651 | 342 | cd05651, M20_ArgE_DapE_like5, M20 Peptidases with | 1e-09 | |
| cd05652 | 335 | cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases | 2e-09 | |
| cd05649 | 376 | cd05649, M20_ArgE_DapE_like4, M20 Peptidases with | 4e-09 | |
| cd03891 | 366 | cd03891, M20_DapE_proteobac, M20 Peptidase proteob | 5e-09 | |
| cd05680 | 437 | cd05680, M20_dipept_like_3, Uncharacterized M20 Di | 7e-09 | |
| PRK13983 | 400 | PRK13983, PRK13983, diaminopimelate aminotransfera | 1e-08 | |
| cd02697 | 395 | cd02697, M20_like, M20 Zn-peptidases include exope | 2e-08 | |
| PRK13013 | 427 | PRK13013, PRK13013, succinyl-diaminopimelate desuc | 3e-08 | |
| PRK13009 | 375 | PRK13009, PRK13009, succinyl-diaminopimelate desuc | 4e-08 | |
| TIGR01246 | 370 | TIGR01246, dapE_proteo, succinyl-diaminopimelate d | 6e-08 | |
| TIGR01887 | 447 | TIGR01887, dipeptidaselike, dipeptidase, putative | 6e-08 | |
| cd08013 | 377 | cd08013, M20_ArgE_DapE_like3, M20 Peptidases with | 9e-08 | |
| PRK08588 | 377 | PRK08588, PRK08588, succinyl-diaminopimelate desuc | 1e-07 | |
| cd08012 | 423 | cd08012, M20_ArgE-related, M20 Peptidases with sim | 2e-07 | |
| TIGR01892 | 364 | TIGR01892, AcOrn-deacetyl, acetylornithine deacety | 3e-07 | |
| cd05653 | 341 | cd05653, M20_ArgE_LysK, M20 Peptidase acetylornith | 3e-07 | |
| PRK07522 | 385 | PRK07522, PRK07522, acetylornithine deacetylase; P | 6e-07 | |
| PRK07205 | 444 | PRK07205, PRK07205, hypothetical protein; Provisio | 1e-06 | |
| PRK08554 | 438 | PRK08554, PRK08554, peptidase; Reviewed | 2e-06 | |
| PRK06446 | 436 | PRK06446, PRK06446, hypothetical protein; Provisio | 2e-06 | |
| PRK08596 | 421 | PRK08596, PRK08596, acetylornithine deacetylase; V | 5e-06 | |
| cd05676 | 466 | cd05676, M20_dipept_like_CNDP, M20 cytosolic nonsp | 9e-06 | |
| PRK09104 | 464 | PRK09104, PRK09104, hypothetical protein; Validate | 2e-05 | |
| cd05678 | 466 | cd05678, M20_dipept_like_1, Uncharacterized M20 Di | 2e-05 | |
| cd03888 | 453 | cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptida | 3e-05 | |
| PRK13004 | 399 | PRK13004, PRK13004, peptidase; Reviewed | 4e-05 | |
| cd03885 | 363 | cd03885, M20_CPDG2, M20 Peptidase Glutamate carbox | 5e-05 | |
| PRK08201 | 456 | PRK08201, PRK08201, hypothetical protein; Provisio | 5e-05 | |
| PRK05111 | 383 | PRK05111, PRK05111, acetylornithine deacetylase; P | 5e-05 | |
| PRK07473 | 376 | PRK07473, PRK07473, carboxypeptidase; Provisional | 6e-05 | |
| cd03896 | 359 | cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspar | 1e-04 | |
| cd03893 | 428 | cd03893, M20_Dipept_like, M20 Dipeptidases | 1e-04 | |
| TIGR01886 | 466 | TIGR01886, dipeptidase, dipeptidase PepV | 2e-04 | |
| PRK07318 | 466 | PRK07318, PRK07318, dipeptidase PepV; Reviewed | 3e-04 | |
| cd05681 | 430 | cd05681, M20_dipept_like_4, Uncharacterized M20 Di | 7e-04 |
| >gnl|CDD|193524 cd05646, M20_AcylaseI_like, M20 Aminoacylase-I like subfamily | Back alignment and domain information |
|---|
Score = 497 bits (1281), Expect = e-177
Identities = 177/302 (58%), Positives = 212/302 (70%), Gaps = 7/302 (2%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
+D + RFR YL+I T PNPDY A +F+ QA+ L L + +E KP+++L W GS
Sbjct: 1 EDEAVTRFREYLRIRTVHPNPDYDAAVEFLKRQAKELGLPVKVIEVVPGKPIVVLTWEGS 60
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
+P+LPSILLNSHTDVVP KW+H PF AH D GNI+ARG+QDMKCVG+QYLEAIRRL
Sbjct: 61 DPELPSILLNSHTDVVPVFEEKWTHDPFSAHKDEDGNIYARGAQDMKCVGIQYLEAIRRL 120
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
KASGF+P R+++LSFVPDEEIGGHDG EKF + F LNVG LDEGLAS TE+YR FY
Sbjct: 121 KASGFKPKRTIHLSFVPDEEIGGHDGMEKFVKTEEFKKLNVGFALDEGLASPTEEYRVFY 180
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKA-GLKAEGEV 265
ER PWW+VI A G PGHG+KL DN+A E L K IE FR QF +K+ G G+V
Sbjct: 181 GERSPWWVVITASGTPGHGSKLLDNTAGEKLMKVIEKFMEFREEQFQRLKSNGKLTIGDV 240
Query: 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMT 325
SVN+ LK G MN+ PSEAEAGFDIR+PPT D E E+RI E A A R +T
Sbjct: 241 TSVNLTMLKG------GVQMNVVPSEAEAGFDIRIPPTVDLEEFEKRIKEWCAEAGRGVT 294
Query: 326 FE 327
+E
Sbjct: 295 YE 296
|
Peptidase M20 family, Aminoacylase-I like (AcyI-like; Acylase I; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. Acylase I is involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate) and is considered as a potential target of antimicrobial agents. Porcine AcyI is also shown to deacetylate certain quorum-sensing N-acylhomoserine lactones, while the rat enzyme has been implicated in degradation of chemotactic peptides of commensal bacteria. Prokaryotic arginine synthesis usually involves the transfer of an acetyl group to glutamate by ornithine acetyltransferase in order to form ornithine. However, Escherichia coli acetylornithine deacetylase (acetylornithinase, ArgE) (EC 3.5.1.16) catalyzes the deacylation of N2-acetyl-L-ornithine to yield ornithine and acetate. Phylogenetic evidence suggests that the clustering of the arg genes in one continuous sequence pattern arose in an ancestor common to Enterobacteriaceae and Vibrionaceae, where ornithine acetyltransferase was lost and replaced by a deacylase. Length = 391 |
| >gnl|CDD|233615 TIGR01880, Ac-peptdase-euk, N-acyl-L-amino-acid amidohydrolase | Back alignment and domain information |
|---|
Score = 470 bits (1212), Expect = e-167
Identities = 175/308 (56%), Positives = 221/308 (71%), Gaps = 7/308 (2%)
Query: 21 SSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLIL 80
SS +D + RFR YL+I+T QPNPDY F++ QA+ L L +T+EF KP+++
Sbjct: 2 SSSKWEEDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVV 61
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYL 140
L WPGSNP+LPSILLNSHTDVVP W+H PF A D GNI+ARG+QDMKCVG+QYL
Sbjct: 62 LTWPGSNPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYL 121
Query: 141 EAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE 200
EA+R LKASGF+ R++++SFVPDEEIGGHDG EKFA + F +LN+G LDEGLAS +
Sbjct: 122 EAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKALNLGFALDEGLASPDD 181
Query: 201 DYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLK 260
YR FYAER PWW+V+ A G PGHG+KL +N+AME L KS+ES+RRFR SQF L+++
Sbjct: 182 VYRVFYAERVPWWVVVTAPGNPGHGSKLMENTAMEKLEKSVESIRRFRESQFQLLQSNPD 241
Query: 261 -AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP 319
A G+V SVN+ LK G S N+ PSEAEAGFDIR+ P+ D E +E R+ E A
Sbjct: 242 LAIGDVTSVNLTKLKGGVQS------NVIPSEAEAGFDIRLAPSVDFEEMENRLDEWCAD 295
Query: 320 ASRNMTFE 327
A +T+E
Sbjct: 296 AGEGVTYE 303
|
This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids. Length = 400 |
| >gnl|CDD|193550 cd05675, M20_yscS_like, M20 Peptidase, carboxypeptidase yscS-like | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 1e-43
Identities = 86/325 (26%), Positives = 145/325 (44%), Gaps = 49/325 (15%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
+ ++IDT+ P + T A++++ A+ + ++ + LE A + ++ + PG++P P +
Sbjct: 4 LQELIRIDTTNPPGNETRAAEYLAARLKEAGIDIEILESAPGRANLVARLPGTDPSAPPL 63
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LL H DVVP++P WS PF + G ++ RG+ DMK + L A+RRLK GF+P
Sbjct: 64 LLLGHLDVVPADPEDWSVDPFSGEIKD-GYVYGRGAVDMKGMVAMMLAALRRLKREGFKP 122
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSH--VFNSLNVGIVLDE-GLASTTED-----YRAF 205
R + L+F DEE GG GA+ ++H +F+ ++E G S + Y
Sbjct: 123 DRDLILAFTADEEAGGEYGAKWLVENHPDLFD--GAEFAINEGGGGSLDDGGKPRLYPIQ 180
Query: 206 YAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQF-----DLVKAGLK 260
AE+ WL + A G GHG+ ++A+ L E++ R A +F + +A +
Sbjct: 181 TAEKGYAWLRLTATGPGGHGSMPRPDNAIYRL---AEALARLGAYRFPVRLTETTRAYFE 237
Query: 261 A-----EGEVVSVNMAFLKAGTP---------------------SPN----GFVMNLQPS 290
G + + P G N+ P
Sbjct: 238 QLAEITGGPLDAAMKRLAADPLDEAAAALGSADPLLHATLRTTCVPTMLEAGHKENVIPQ 297
Query: 291 EAEAGFDIRVPPTTDAESLERRIVE 315
EA A D R+ P D E + + +
Sbjct: 298 EATATVDCRILPGVDEEEVLATLKK 322
|
Peptidase M20 family, yscS (GlyX-carboxypeptidase, CPS1, carboxypeptidase S, carboxypeptidase a, carboxypeptidase yscS, glycine carboxypeptidase)-like subfamily. This group contains proteins that have been uncharacterized to date with similarity to vacuolar proteins involved in nitrogen metabolism which are essential for use of certain peptides that are sole nitrogen sources. YscS releases a C-terminal amino acid from a peptide that has glycine as the penultimate residue. It is synthesized as one polypeptide chain precursor which yields two active precursor molecules after carbohydrate modification in the secretory pathway. The proteolytically unprocessed forms are associated with the membrane, whereas the mature forms of the enzyme are soluble. Enzymes in this subfamily may also cleave intracellularly generated peptides in order to recycle amino acids for protein synthesis. Length = 426 |
| >gnl|CDD|193570 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 2e-35
Identities = 68/285 (23%), Positives = 111/285 (38%), Gaps = 38/285 (13%)
Query: 38 LQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97
+ I + P + ++ E L + + E A +P ++ G P++LLN
Sbjct: 7 VAIPSVNPPGGEAEVADYLAELLEDLGIPVEVDEVAPGRPNLVATIGGGRG--PTLLLNG 64
Query: 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK--CVGMQYLEAIRRLKASGFQPVR 155
H D VP W++ PF ++ G ++ RG+ DMK M L A+ L +G
Sbjct: 65 HLDTVPVGDEDWTYDPFEGEIED-GRLYGRGACDMKGGLAAM--LAALAELAEAGVPLPG 121
Query: 156 SVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE--DYRAFYAERCPWW 213
V L+ DEE G GA + + IV E A +
Sbjct: 122 RVTLAATVDEET-GSLGARALLERGYALRPDAAIV--------GEPTSLDICIAHKGSLR 172
Query: 214 LVIKARGAPGHGA--KLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV---VSV 268
L + A G HG+ +L N A+ L K I ++ + L AE + ++
Sbjct: 173 LRVTATGKAAHGSRPELGVN-AIYALAKVIGALEELPFA--------LPAEHPLLGPPTL 223
Query: 269 NMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRI 313
N+ +K G +N+ P EA DIR+ P D + + +
Sbjct: 224 NVGVIKGGE------QVNVVPDEATLELDIRLVPGEDPDEVLAEL 262
|
Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) like family of enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this family are mostly bacterial and have been inferred by homology as being related to both, ArgE and DapE. This family also includes N-acetyl-L-citrulline deacetylase (ACDase; acetylcitrulline deacetylase), a unique, novel enzyme found in Xanthomonas campestris, a plant pathogen, in which N-acetyl-L-ornithine is the substrate for transcarbamoylation reaction, and the product is N-acetyl-L-citrulline. Thus, in the arginine biosynthesis pathway, ACDase subsequently catalyzes the hydrolysis of N-acetyl-L-citrulline to acetate and L-citrulline. Length = 365 |
| >gnl|CDD|181163 PRK07906, PRK07906, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-33
Identities = 88/326 (26%), Positives = 141/326 (43%), Gaps = 57/326 (17%)
Query: 35 RAYLQIDTS----QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQL 90
++IDT+ A++++ + + LE LE A + ++ + PG++P
Sbjct: 6 SELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSR 65
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK-CVGMQYLEAIRRLKAS 149
P++L++ H DVVP+E + WS HPF + G ++ RG+ DMK M L +R L +
Sbjct: 66 PALLVHGHLDVVPAEAADWSVHPFSGEI-RDGYVWGRGAVDMKDMDAM-MLAVVRHLART 123
Query: 150 GFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VFNSLNVGIVLDEGLASTTEDYRAFY- 206
G +P R + +FV DEE GG GA D+H +F + I G + T Y
Sbjct: 124 GRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPELFEGVTEAISEVGGFSLTVPGRDRLYL 183
Query: 207 ---AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQF-----DLVKAG 258
AE+ W+ + ARG GHG+ + D++A+ L E+V R ++ V+A
Sbjct: 184 IETAEKGLAWMRLTARGRAGHGSMVNDDNAVTRL---AEAVARIGRHRWPLVLTPTVRAF 240
Query: 259 LKAEGEVV-----------------------------SVNMAFLKAGTPSPNGFVMNLQP 289
L E+ + N LKA G+ +N+ P
Sbjct: 241 LDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKA------GYKVNVIP 294
Query: 290 SEAEAGFDIRVPPTTDAESLERRIVE 315
AEA D R P + E + E
Sbjct: 295 GTAEAVVDGRFLPGREEE-FLATVDE 319
|
Length = 426 |
| >gnl|CDD|193549 cd05674, M20_yscS, M20 Peptidase, carboxypeptidase yscS | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-33
Identities = 64/176 (36%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 31 IERFRAYLQIDT------SQPNPDYTNASKFILAQAEALSLESQTLEFAK-NKPLILLKW 83
ER ++I T + D+ KF + L + L+ N +L W
Sbjct: 1 AERLSGAVRIPTVSYDDMVDEDEDWDPFYKFHDYLEKTYPLVHKALKLEVVNTYGLLYTW 60
Query: 84 PGSNPQLPSILLNSHTDVVPSEP---SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYL 140
GS+P L ILL +H DVVP P +W+H PF H+D G I+ RG+ D K + L
Sbjct: 61 EGSDPSLKPILLMAHQDVVPVNPGTEDEWTHPPFSGHIDD-GYIWGRGALDDKNSLIAIL 119
Query: 141 EAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLA 196
EA+ L A GFQP R++YL+F DEE+GG GA A+ +++ VLDEG A
Sbjct: 120 EAVEALLAEGFQPERTIYLAFGHDEEVGGTRGAAAIAELLERYGVDLAFVLDEGGA 175
|
Peptidase M20 family, yscS (GlyX-carboxypeptidase, CPS1, carboxypeptidase S, carboxypeptidase a, carboxypeptidase yscS, glycine carboxypeptidase)-like subfamily. This group mostly contains proteins that have been uncharacterized to date, but also includes vacuolar proteins involved in nitrogen metabolism which are essential for use of certain peptides that are sole nitrogen sources. YscS releases a C-terminal amino acid from a peptide that has glycine as the penultimate residue. It is synthesized as one polypeptide chain precursor which yields two active precursor molecules after carbohydrate modification in the secretory pathway. The proteolytically unprocessed forms are associated with the membrane, whereas the mature forms of the enzyme are soluble. Enzymes in this subfamily may also cleave intracellularly generated peptides in order to recycle amino acids for protein synthesis. Length = 441 |
| >gnl|CDD|223697 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 4e-31
Identities = 74/297 (24%), Positives = 117/297 (39%), Gaps = 14/297 (4%)
Query: 27 DDSIIERFRAYLQIDTSQPNPD-YTNASKFILAQAEALSLESQTLEFAKNKPL-ILLKWP 84
D I+E + ++I + + A++ + E L E + E L+
Sbjct: 12 LDDILELLKELVRIPS--VSAGEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARL 69
Query: 85 GSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVG--MQYLE 141
G P++LL H DVVP+ W+ PF + G ++ RG+ DMK G L
Sbjct: 70 GGGDGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTIK-DGKLYGRGAADMK--GGLAAALY 126
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN--VGIVLDEGLASTT 199
A+ LKA+G + V L F DEE GG G + + IV + L S
Sbjct: 127 ALSALKAAGGELPGDVRLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEPTLESEG 186
Query: 200 EDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGL 259
D + WL + +G GH + + + +IE++ DL G
Sbjct: 187 GD-IIVVGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEGF 245
Query: 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEE 316
++V + G G +N+ P EAEA DIR+ P D + + + E
Sbjct: 246 DGP-LGLNVGLILAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELEAE 301
|
Length = 409 |
| >gnl|CDD|236208 PRK08262, PRK08262, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 4e-29
Identities = 71/225 (31%), Positives = 99/225 (44%), Gaps = 40/225 (17%)
Query: 27 DDSIIERFRAYLQIDT-SQPNPDYTNASKFI-----LAQA-----EALSLE---SQTLEF 72
+D+ ER ++ T S + +A+ F L ++ AL E +L
Sbjct: 43 EDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVGGHSL-- 100
Query: 73 AKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP---SKWSHHPFGAHLDSQGNIFARGS 129
L W GS+P L I+L +H DVVP P W+H PF + G ++ RG+
Sbjct: 101 -------LYTWKGSDPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIA-DGYVWGRGA 152
Query: 130 QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGI 189
D K + LEA L A GFQP R++YL+F DEE+GG GA A+ + V +
Sbjct: 153 LDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGL-GARAIAE--LLKERGVRL 209
Query: 190 --VLDEGLASTTEDYRAF--------YAERCPWWLVIKARGAPGH 224
VLDEG A T AE+ L + AR GH
Sbjct: 210 AFVLDEGGAITEGVLPGVKKPVALIGVAEKGYATLELTARATGGH 254
|
Length = 486 |
| >gnl|CDD|216562 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40 | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 7e-28
Identities = 55/225 (24%), Positives = 85/225 (37%), Gaps = 21/225 (9%)
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LL H DVVP + W+H PF ++ G ++ RG DMK + LEA+R LK +G +
Sbjct: 1 LLRGHMDVVPIGETGWTHPPFSWTIE-DGKMYGRGHDDMKGGLLAALEALRALK-AGGKL 58
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL--NVGIVLDEGLASTTEDYRAFYAERCP 211
++ L F PDEE GG +GA + L + G+V + R
Sbjct: 59 KGTIKLLFQPDEEGGGFEGARALIEDGAIFGLHPDQGVVGEPTGLPGGTGIRG-----SL 113
Query: 212 WWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMA 271
+ GA HG+ + +A+ ++ + + S+ VV +
Sbjct: 114 DLFLTVIGGAGHHGSPPHGGNAIALAAAALILLLQLIVSRGVDPLDPA-----VVGI--- 165
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEE 316
GT G N EA R + +L E
Sbjct: 166 ----GTVGGGGGSNNNVIPEAAFLRGRRRTLDEELRALVEEEEEA 206
|
This family includes a range of zinc metallopeptidases belonging to several families in the peptidase classification. Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases. Length = 310 |
| >gnl|CDD|193495 cd03873, Zinc_peptidase_like, Zinc peptidases M18, M20, M28, and M42 | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 1e-21
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
Query: 33 RFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPS 92
+ ++I + + I + E L ++ +E + +++++ G P
Sbjct: 1 LLKELIRIPSVTGEEA--EFADRIARELEELGID---VEVDAHIGNLIVEYGGGEK--PP 53
Query: 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQ 152
+LL +H DVVP+ + W PF G ++ RG+ D K LEA+R LK +GF+
Sbjct: 54 VLLMAHIDVVPAGDTWWWEFPFAVDTLKDGRLYGRGAADDKGSVAALLEALRDLKENGFK 113
Query: 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL-NVGIVLDEG 194
P ++ +F DEE GG GA + VLD G
Sbjct: 114 PKGTIIFAFTADEEAGGSAGAGLALWLLEEGLKVDYLFVLDGG 156
|
Zinc peptidases play vital roles in metabolic and signaling pathways throughout all kingdoms of life. This family corresponds to several clans in the MEROPS database, including the MH clan, which contains 4 families (M18, M20, M28, M42). The peptidase M20 family includes carboxypeptidases such as the glutamate carboxypeptidase from Pseudomonas, the thermostable carboxypeptidase Ss1 of broad specificity from archaea and yeast Gly-X carboxypeptidase. The dipeptidases include bacterial dipeptidase, peptidase V (PepV), a eukaryotic, non-specific dipeptidase, and two Xaa-His dipeptidases (carnosinases). There is also the bacterial aminopeptidase, peptidase T (PepT) that acts only on tripeptide substrates and has therefore been termed a tripeptidase. Peptidase family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. However, several enzymes in this family utilize other first row transition metal ions such as cobalt and manganese. Each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. The aminopeptidases in this family are also called bacterial leucyl aminopeptidases, but are able to release a variety of N-terminal amino acids. IAP aminopeptidase and aminopeptidase Y preferentially release basic amino acids while glutamate carboxypeptidase II preferentially releases C-terminal glutamates. Glutamate carbxypeptidase II and plasma glutamate carboxypeptidase hydrolyze dipeptides. Peptidase families M18 and M42 contain metalloaminopeptidases. M18 is widely distributed in bacteria and eukaryotes. However, only yeast aminopeptidase I and mammalian aspartyl aminopeptidase have been characterized in detail. Some of M42 (also known as glutamyl aminopeptidase) enzymes exhibit aminopeptidase specificity while others also have acylaminoacylpeptidase activity (i.e. hydrolysis of acylated N-terminal residues). Length = 237 |
| >gnl|CDD|233632 TIGR01910, DapE-ArgE, acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 1e-20
Identities = 57/300 (19%), Positives = 116/300 (38%), Gaps = 36/300 (12%)
Query: 31 IERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQ----TLEFAKNKPLILLKWPG 85
+E + + I + + P + + +I + T + K +++K PG
Sbjct: 1 VELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPG 60
Query: 86 SNPQLPSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
+ + S++ N H DVVP+ + W PF ++ G ++ RG+ DMK + L A++
Sbjct: 61 NGNE-KSLIFNGHYDVVPAGDLELWKTDPFKP-VEKDGKLYGRGATDMKGGLVALLYALK 118
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
++ +G +P ++ L V DEE G G F + ++ +
Sbjct: 119 AIREAGIKPNGNIILQSVVDEESGE-AGTLYLLQRGYFKDADGVLI-----PEPSGGDNI 172
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263
+ W ++ +G H + +A+ L K I + + E
Sbjct: 173 VIGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELN--------------ELEE 218
Query: 264 EVVSVNMAFLKAGTPSPNGFVM------NLQPSEAEAGFDIRVPPTTDAESLERRIVEEW 317
+ + N G + N V+ N P E D+R+ P + + + ++I+E+
Sbjct: 219 HIYARNSYGFIPGPITFNPGVIKGGDWVNSVPDYCEFSIDVRIIPEENLDEV-KQIIEDV 277
|
This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 375 |
| >gnl|CDD|236323 PRK08651, PRK08651, succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-20
Identities = 64/310 (20%), Positives = 114/310 (36%), Gaps = 46/310 (14%)
Query: 30 IIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFAKNKP---------LI 79
I+E + ++I T P +Y ++F+ E L ++ +E LI
Sbjct: 8 IVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLI 67
Query: 80 LLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK---CVG 136
+ G+ P + N H DVVP + PF + G ++ RG+ DMK
Sbjct: 68 ARRGSGN----PHLHFNGHYDVVPPGEGWSVNVPFEPKVKD-GKVYGRGASDMKGGIAAL 122
Query: 137 MQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLA 196
+ E + ++ L+ VPDEE GG G + +++ E
Sbjct: 123 LAAFERLDPAGDG------NIELAIVPDEETGGT-GTGYLVE--EGKVTPDYVIVGEP-- 171
Query: 197 STTEDYRAFYAERCPWWLVIKARGAPGHGA--KLYDNS--AMENLFKSIESVRRFRASQF 252
+ D R W V+K G H + L N+ A + + ++S S++
Sbjct: 172 -SGLDN-ICIGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSKY 229
Query: 253 DLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERR 312
+ + V++ ++ GT N+ P D R+ P AE +
Sbjct: 230 EYDDE--RGAKPTVTLGGPTVEGGT------KTNIVPGYCAFSIDRRLIPEETAEEVRDE 281
Query: 313 I---VEEWAP 319
+ ++E AP
Sbjct: 282 LEALLDEVAP 291
|
Length = 394 |
| >gnl|CDD|193515 cd03895, M20_ArgE_DapE_like2, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 59/248 (23%), Positives = 93/248 (37%), Gaps = 56/248 (22%)
Query: 91 PSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMK--CVGMQYLEAIRRLK 147
S++LN H DVVP+ W+ PF ++ G ++ RG+ DMK L A+ L+
Sbjct: 74 RSLILNGHIDVVPAGDLDLWTRDPFSPVIED-GWLYGRGAGDMKGGLAAA--LFAVEALR 130
Query: 148 ASGFQPVRSVYLSFVPDEEIGGH------------DGA---EKFADSHVFNSLNVGIVLD 192
A+G + V V +EE GG+ D A E VG++
Sbjct: 131 AAGIRLAGDVAFQSVVEEECGGNGALATLLRGYRADAAIIPEPTGLK--IVPAQVGVL-- 186
Query: 193 EGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQ 251
W ++ G P H A Y+ +A+E + I ++R A
Sbjct: 187 --------------------WFRLRVPGRPAHAATRYEGVNAIEKAYALIAALRELEAEW 226
Query: 252 FDLVKAGLKAEGEV-VSVNMAFLKAGT-PSPNGFVMNLQPSEAEAGFDIRVPPTTDAESL 309
V L A+ +++N+ ++ G PS V P E I V P
Sbjct: 227 NARVTHPLFADHPHPINLNVGKIEGGDWPSS---V----PDRCELEGRIGVYPGETPAEA 279
Query: 310 ERRIVEEW 317
+ I E+
Sbjct: 280 KAEI-EDA 286
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly bacterial, and have been inferred by homology as being related to both ArgE and DapE. Length = 399 |
| >gnl|CDD|193559 cd08011, M20_ArgE_DapE_like6, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 7e-17
Identities = 73/332 (21%), Positives = 121/332 (36%), Gaps = 55/332 (16%)
Query: 39 QIDT-SQPNPDYTNASKFILAQAEALSLESQ-----------TLEFAKNKP-LILLKWPG 85
+I T + P +Y ++++ + E L E + P I++ G
Sbjct: 9 RIPTVNPPGENYEECAEYLKERLEELGFEVEIIEVPDEYLDKYYPRHPGNPRFIVVARLG 68
Query: 86 SNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR 145
P P + N H DVVP WS PF + G I+ RG+ DMK + A+
Sbjct: 69 EGP--PRLHFNGHYDVVPPGDG-WSVDPFKPVV-KDGRIYGRGASDMKGGIAAAIAALEA 124
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD------SHVFNSLNVGIVLDEGLASTT 199
L +G P V +FVPDEE GG G + +V ++ E +
Sbjct: 125 LAEAGVPPNGPVEAAFVPDEESGGETGTGYLVEEGGIRPDYV--------IIAEP---SG 173
Query: 200 EDYRAFYAERCPWWLVIKARGAPGHG--AKLYDN-----SAM-ENLFKSIESVRRFRASQ 251
D + R W ++ +G HG L N S + L ++++ R S+
Sbjct: 174 LD-NIWIGHRGIVWGEVRVKGKQAHGSTPWLGINAFEKASVIALELQEALKPRLSSRKSK 232
Query: 252 FDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLER 311
++ +V + GT N+ P D R+ P + E + +
Sbjct: 233 YE----YEDERTANPTVTLGGEAEGTGK-----TNIVPGYFRFSIDRRLIPEENLEEVRK 283
Query: 312 RIVEEWAPASRNMTFEVVINSLSLLH---TNP 340
IV+ A + + SL ++ T P
Sbjct: 284 EIVDLLERAEEGIKHRFEVKSLMIVSAEFTPP 315
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 390 |
| >gnl|CDD|236388 PRK09133, PRK09133, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 79 ILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQ 138
++ + G++P+ P ILL +H DVV ++ W+ PF ++ G + RG+ D K
Sbjct: 91 LVARLRGTDPKKP-ILLLAHMDVVEAKREDWTRDPF-KLVEENGYFYGRGTSDDKADAAI 148
Query: 139 YLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLAST 198
++ + RLK GF+P R + L+ DEE +G A++H ++ L+EG T
Sbjct: 149 WVATLIRLKREGFKPKRDIILALTGDEEGTPMNGVAWLAENHRDL-IDAEFALNEGGGGT 207
Query: 199 TED 201
++
Sbjct: 208 LDE 210
|
Length = 472 |
| >gnl|CDD|180721 PRK06837, PRK06837, acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 85 GSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKC--VGMQYLE 141
+ S++L H DVVP P WS PF + G ++ RG+ DMK M +
Sbjct: 92 PAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVI-VDGWMYGRGAADMKAGLAAMLF-- 148
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
A+ L+A+G P V+ V +EE G +GA ++L G D L
Sbjct: 149 ALDALRAAGLAPAARVHFQSVIEEESTG-NGA--------LSTLQRGYRADACLIPEPTG 199
Query: 202 YRAFYAERCPWWLVIKARGAPGH 224
+ A+ W ++ RGAP H
Sbjct: 200 EKLVRAQVGVIWFRLRVRGAPVH 222
|
Length = 427 |
| >gnl|CDD|180745 PRK06915, PRK06915, acetylornithine deacetylase; Validated | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 8e-12
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 92 SILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
S++LN H DVVP + ++W HHP+ + G I+ RG+ DMK + L A+ L SG
Sbjct: 95 SMILNGHIDVVPEGDVNQWDHHPYSGEV-IGGRIYGRGTTDMKGGNVALLLAMEALIESG 153
Query: 151 FQPVRSVYLSFVPDEEIGG 169
+ V V +EE GG
Sbjct: 154 IELKGDVIFQSVIEEESGG 172
|
Length = 422 |
| >gnl|CDD|193527 cd05650, M20_ArgE_DapE_like1, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 7e-11
Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 16/157 (10%)
Query: 76 KPLILLKWPGSNPQLPSILLNSHTDVVP-SEPSKWSHHPFGAHLDSQGNIFARGSQD--M 132
+P I+ + PG++ ++ + SH DVVP + S W PF + I+ RG +D
Sbjct: 59 RPNIVARIPGADTS-RTLWIISHMDVVPPGDLSLWKTDPFKPVVKG-DKIYGRGVEDNGQ 116
Query: 133 KCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV--FNSLNVGIV 190
V A + LK G P ++ L+FV DEE G G + H F ++ +V
Sbjct: 117 AIVSSLL--AAKALKDLGITPKYNLGLAFVADEETGSRYGIKYLLKKHPELFKKDDLILV 174
Query: 191 LDEGLA--STTEDYRAFYAERCPWWLVIKARGAPGHG 225
D G S E AE+ WL + +G H
Sbjct: 175 PDAGNPDGSMIE-----IAEKSILWLKVTVKGKQCHA 206
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly bacterial and archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 393 |
| >gnl|CDD|193514 cd03894, M20_ArgE, M20 Peptidase acetylornithine deacetylase | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 8e-11
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRRL 146
++L+ HTDVVP + +WS PF + G ++ RG+ DMK C L A L
Sbjct: 58 GGLVLSGHTDVVPVDGQRWSSDPFTLT-ERDGRLYGRGTCDMKGFLACA----LAAAPEL 112
Query: 147 KASGFQPVRSVYLSFVPDEEIG 168
A+ + R ++L+F DEE+G
Sbjct: 113 AAADLK--RPLHLAFSYDEEVG 132
|
Peptidase M20 family, acetylornithine deacetylase (ArgE, Acetylornithinase, AO, N2-acetyl-L-ornithine amidohydrolase, EC 3.5.1.16) subfamily. ArgE catalyzes the conversion of N-acetylornithine to ornithine, which can then be incorporated into the urea cycle for the final stage of arginine synthesis. The substrate specificity of ArgE is quite broad; several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 372 |
| >gnl|CDD|193528 cd05651, M20_ArgE_DapE_like5, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 32/231 (13%)
Query: 88 PQLPSILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
P+ILLNSH D V P+ W+ PF ++ G ++ GS D + L L
Sbjct: 54 EGKPTILLNSHHDTVK--PNAGWTRDPFEP-VEEGGKLYGLGSNDAGASLVSLLATFLHL 110
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
+ G ++ +EEI G +G E L++ IV TE A
Sbjct: 111 YSEGPLKYNLIFA-ASAEEEISGKNGLESLLPE--LPPLDLAIV-----GEPTEMQPAI- 161
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV- 265
AE+ L A+G GH A+ ++A ++K+++ ++ R +F L G V
Sbjct: 162 AEKGLLVLDCTAKGKAGHAARNEGDNA---IYKALDDIQWLRNFRFPKKSELL---GPVK 215
Query: 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEE 316
++V ++AGT N+ P DIR TT+A + E I E
Sbjct: 216 MTVTQ--IQAGTQH------NVVPDSCTFTVDIR---TTEAYTNE-EIFEI 254
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are bacterial, and have been inferred by homology as being related to both ArgE and DapE. Length = 342 |
| >gnl|CDD|193529 cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 37/101 (36%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 80 LLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK-CVGMQ 138
+ +PGS Q P +LL SH D VP PF + I+ RGS D K V Q
Sbjct: 49 VYAYPGSKRQ-PRVLLTSHIDTVP---------PFIPYSIDGDFIYGRGSVDAKGSVAAQ 98
Query: 139 YLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179
+ A L A G V L FV EE GG DG + D
Sbjct: 99 II-AAEELLAEGEIGEGDVGLLFVVGEETGG-DGMKAANDL 137
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly fungal, and have been inferred by homology as being related to both ArgE and DapE. Length = 335 |
| >gnl|CDD|193526 cd05649, M20_ArgE_DapE_like4, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-09
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 85 GSNPQLPSILLNSHTDVVP-SEPSKWSHHPFGAHLDSQGNIFARGSQDMK--CVGMQYLE 141
G IL ++H D VP + +W PFG ++ G I+ RG+ DMK M Y
Sbjct: 49 GGGKP-KIILFDAHIDTVPVGDREQWRFDPFGGEIE-DGRIYGRGTSDMKGGLAAMVY-- 104
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDG 172
A + LK G ++Y++ EE +G
Sbjct: 105 AAKILKDLGLDFAGTIYVTGTVHEED--CEG 133
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly bacterial and archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 376 |
| >gnl|CDD|193511 cd03891, M20_DapE_proteobac, M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 5e-09
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRR 145
P + HTDVVP + WS PF + G ++ RG+ DMK +L A R
Sbjct: 55 PHLCFAGHTDVVPPGDEEGWSSPPFSPTIK-DGMLYGRGAADMKGGIAA----FLAAAER 109
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDG 172
A S+ DEE +G
Sbjct: 110 FVAEYPDHKGSISFLITSDEEGPAING 136
|
Peptidase M20 family, proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE; aspartyl dipeptidase; succinyl-diaminopimelate desuccinylase) subfamily. DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. It has been shown that DapE is essential for cell growth and proliferation. DapEs have been purified from Escherichia coli and Haemophilus influenzae, while the genes that encode for DapEs have been sequenced from several bacterial sources such as Corynebacterium glutamicum, Helicobacter pylori, Neisseria meningitidis and Mycobacterium tuberculosis. DapE is a small, dimeric enzyme that requires two zinc atoms per molecule for full enzymatic activity. All of the amino acids that function as metal binding ligands are strictly conserved in DapE. Length = 366 |
| >gnl|CDD|193555 cd05680, M20_dipept_like_3, Uncharacterized M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 77 PLILLKWPGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCV 135
P++ +W P P++L+ H DV P +P W PF + G I+ARG+ D K
Sbjct: 51 PIVYAEWLH-APGAPTVLVYGHYDVQPPDPLELWESPPFEPTIR-DGRIYARGASDDKGQ 108
Query: 136 GMQYLEAIRR-LKASGFQPVRSVYLSFVPDEEIGG 169
+L+A+ L +G PV +L +EEIG
Sbjct: 109 VFTHLKALEALLAVTGRLPVNVKFL-IEGEEEIGS 142
|
Peptidase M20 family, unknown dipeptidase-like subfamily 3 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 437 |
| >gnl|CDD|237578 PRK13983, PRK13983, diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 77 PLILLKWPGSNPQLPSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQD--MK 133
P I+ K PG + + ++ + SH DVVP + S W PF + G I+ RGS+D
Sbjct: 64 PNIVAKIPGGDGKR-TLWIISHMDVVPPGDLSLWETDPFKPVVKD-GKIYGRGSEDNGQG 121
Query: 134 CVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VFNSLNVGIVL 191
V A++ L G +P ++ L+FV DEE G G + H +F ++ +V
Sbjct: 122 IVSSLL--ALKALMDLGIRPKYNLGLAFVSDEETGSKYGIQYLLKKHPELFKKDDLILVP 179
Query: 192 DEGLA--STTEDYRAFYAERCPWWLVIKARGAPGHG 225
D G S E AE+ WL +G H
Sbjct: 180 DAGNPDGSFIE-----IAEKSILWLKFTVKGKQCHA 210
|
Length = 400 |
| >gnl|CDD|193494 cd02697, M20_like, M20 Zn-peptidases include exopeptidases | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 51/146 (34%), Positives = 67/146 (45%), Gaps = 29/146 (19%)
Query: 58 AQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSK-WSHHPFGA 116
A A +ES T LI+ G P P++ LN+H DVVP P W+H P+GA
Sbjct: 50 AVVRAAGMESAT-------NLIVRHRFGDGP--PTVALNAHGDVVP--PGGGWTHDPYGA 98
Query: 117 HLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176
++ G ++ RG+ K Y A+R L ASG +V L F DEE GG G
Sbjct: 99 EIE-DGWLYGRGAAVSKSDFATYTFALRALIASGAPLNGTVELHFTYDEETGGEAGP--- 154
Query: 177 ADSHVFNSLNVGIVLDEGLASTTEDY 202
G +LD+GL T DY
Sbjct: 155 -----------GWLLDQGL--TRPDY 167
|
Peptidase M20 family; uncharacterized subfamily. These hypothetical proteins have been inferred by homology to be exopeptidases: carboxypeptidases, dipeptidases and a specialized aminopeptidase. In general, the peptidase hydrolyzes the late products of protein degradation in order to complete the conversion of proteins to free amino acids. Members of this subfamily may bind metal ions such as zinc. Length = 395 |
| >gnl|CDD|237268 PRK13013, PRK13013, succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 5/136 (3%)
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
+ NSH DVV W+ PFG + G I+ RG+ DMK + A A
Sbjct: 85 DCVHFNSHHDVVEVG-HGWTRDPFGGEVKD-GRIYGRGACDMKGGLAASIIAAEAFLAVY 142
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC 210
S+ +S DEE GG G A+ F+ V V+ + R R
Sbjct: 143 PDFAGSIEISGTADEESGGFGGVAYLAEQGRFSPDRVQHVI---IPEPLNKDRICLGHRG 199
Query: 211 PWWLVIKARGAPGHGA 226
WW ++ RG HG+
Sbjct: 200 VWWAEVETRGRIAHGS 215
|
Length = 427 |
| >gnl|CDD|237265 PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 4e-08
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMK 133
P + HTDVVP + W+ PF + G ++ RG+ DMK
Sbjct: 59 PHLCFAGHTDVVPPGDLEAWTSPPFEPTIR-DGMLYGRGAADMK 101
|
Length = 375 |
| >gnl|CDD|162269 TIGR01246, dapE_proteo, succinyl-diaminopimelate desuccinylase, proteobacterial clade | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-08
Identities = 66/291 (22%), Positives = 105/291 (36%), Gaps = 58/291 (19%)
Query: 47 PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106
P+ I + E L E + + F K L + G P + HTDVVP+ P
Sbjct: 16 PNDAGCQDIIAERLEKLGFEIEWMHFGDTKNLWATRGTGE----PVLAFAGHTDVVPAGP 71
Query: 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL--KASGFQPVRSVYLSFVP 163
+WS PF G ++ RG+ DMK ++ A R K + S+ L
Sbjct: 72 EEQWSSPPFEPVERD-GKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKG--SISLLITS 128
Query: 164 DEEIGGHDGAEKFAD--------------SHVFNSLNVGIVLDEG-LASTTEDYRAFYAE 208
DEE DG +K + + +G V+ G S T +
Sbjct: 129 DEEGTAIDGTKKVVETLMARDELIDYCIVGEPSSVKKLGDVIKNGRRGSITGN------- 181
Query: 209 RCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV--- 265
+ +G GH A Y + A + K+ ++ A ++D EG
Sbjct: 182 -------LTIKGIQGHVA--YPHLANNPIHKAAPALAELTAIKWD--------EGNEFFP 224
Query: 266 -VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVE 315
S+ + + AGT N+ P E F++R E L++R+
Sbjct: 225 PTSLQITNIHAGTG-----ANNVIPGELYVQFNLRFSTEVSDEILKQRVEA 270
|
This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum , and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason [Amino acid biosynthesis, Aspartate family]. Length = 370 |
| >gnl|CDD|233618 TIGR01887, dipeptidaselike, dipeptidase, putative | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSV 157
H DVVP W+ PF + G I+ RG+ D K + A++ LK G + + +
Sbjct: 75 HLDVVP-AGDGWTSPPFEPTIK-DGRIYGRGTLDDKGPTIAAYYAMKILKELGLKLKKKI 132
Query: 158 YLSFVPDEEIG 168
F DEE G
Sbjct: 133 RFIFGTDEESG 143
|
This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific. Length = 447 |
| >gnl|CDD|193561 cd08013, M20_ArgE_DapE_like3, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 9e-08
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 21/149 (14%)
Query: 28 DSIIERFRAYLQIDTSQPN-----PDYTNASKFILAQAEALSLESQTLEFAKNKPLIL-- 80
D +++ + ++ID+S P + +I +E LE +P ++
Sbjct: 1 DDVVDLTQTLVRIDSSNPTLGPGGAGEAEIAAYIADWLRHRGIEVHRLEGTPGRPSVVGV 60
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK---CVGM 137
L+ G S++LN H D V + P + + G ++ RG+ DMK M
Sbjct: 61 LRGTGGGR---SLMLNGHIDTVS--LGGYEGDPLSGRI-ADGRLYGRGAYDMKGGLAAMM 114
Query: 138 QYLEAIRRLKASGFQPVRSVYLSFVPDEE 166
L ++ G V L+ V DEE
Sbjct: 115 AALATAKKSPLRG-----DVILAAVADEE 138
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly fungal and bacterial, and have been inferred by homology as being related to both ArgE and DapE. Length = 377 |
| >gnl|CDD|181490 PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 27/230 (11%)
Query: 91 PSILLNSHTDVV-PSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS 149
P + L+ H DVV + KW++ PF + G ++ RG+ DMK + A+ LK
Sbjct: 60 PVLALSGHMDVVAAGDVDKWTYDPFELT-EKDGKLYGRGATDMKSGLAALVIAMIELKEQ 118
Query: 150 GFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAER 209
G ++ L EE+G GA++ + + L+ +++ E + YA +
Sbjct: 119 GQLLNGTIRLLATAGEEVGEL-GAKQLTEKGYADDLD-ALIIGE-----PSGHGIVYAHK 171
Query: 210 CPWWLVIKARGAPGHGAKLYDNSAMENL-FKSIESVRRF--RASQ-FDLVKAGLKAEGEV 265
+ + G H S+M L +I+ + F + FD +K G +
Sbjct: 172 GSMDYKVTSTGKAAH-------SSMPELGVNAIDPLLEFYNEQKEYFDSIKKHNPYLGGL 224
Query: 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVE 315
V G +N P EAE F+IR P D + + + E
Sbjct: 225 THVVTII-NGGEQ------VNSVPDEAELEFNIRTIPEYDNDQVISLLQE 267
|
Length = 377 |
| >gnl|CDD|193560 cd08012, M20_ArgE-related, M20 Peptidases with simlarity to acetylornithine deacetylases | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 13/146 (8%)
Query: 36 AYLQIDTSQPNPDYTNASKFILAQAEALS------LESQTLEFAKNKPLILLKWPGSNPQ 89
LQ + P+ NA + +L + S LE + + + + + +++++PG+
Sbjct: 18 KTLQNNPPALVPEEDNAVRHVLETLKPYSTENGGPLEIEHVAYPEGRGNLIVEYPGTGEG 77
Query: 90 LPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGN-IFARGSQDMKCVGMQYL--EAIRRL 146
+ SH DVVP+ P W PF L G+ ++ RG+ D C+G L + R+L
Sbjct: 78 KILSFVGSHMDVVPANPEAWEFDPF--SLSIDGDKLYGRGTTD--CLGHVALVTDLFRQL 133
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDG 172
R+V F+ +EE G
Sbjct: 134 AERKPALKRTVVAVFIANEENSEIPG 159
|
Peptidase M20 family, acetylornithine deacetylase (ArgE, Acetylornithinase, AO, N2-acetyl-L-ornithine amidohydrolase, EC 3.5.1.16)-related subfamily. Proteins in this subfamily have not yet been characterized, but have been predicted to have deacetylase activity. ArgE catalyzes the conversion of N-acetylornithine to ornithine, which can then be incorporated into the urea cycle for the final stage of arginine synthesis. The substrate specificity of ArgE is quite broad; several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 423 |
| >gnl|CDD|130947 TIGR01892, AcOrn-deacetyl, acetylornithine deacetylase (ArgE) | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 57/246 (23%), Positives = 99/246 (40%), Gaps = 22/246 (8%)
Query: 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQ 152
+ L+ HTDVVP + + W+ PF + G ++ RG+ DMK L A L A +
Sbjct: 61 LALSGHTDVVPYDDAAWTRDPFRLT-EKDGRLYGRGTCDMKGFLACALAAAPDLAAEQLK 119
Query: 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPW 212
+ ++L+ DEE+G GA K ++ ++ E A +
Sbjct: 120 --KPLHLALTADEEVGCT-GAPKMIEAGAGRPR--HAIIGE-----PTRLIPVRAHKGYA 169
Query: 213 WLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV--VSVNM 270
+ RG GH + Y +S + +F++ ++R L++ L ++N+
Sbjct: 170 SAEVTVRGRSGHSS--YPDSGVNAIFRAGRFLQRLVHLADTLLREDLDEGFTPPYTTLNI 227
Query: 271 AFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRN-MTFEVV 329
++ G N+ P E F+ R P D E L + + R+ FEV
Sbjct: 228 GVIQGGKAV------NIIPGACEFVFEWRPIPGMDPEELLQLLETIAQALVRDEPGFEVQ 281
Query: 330 INSLSL 335
I +S
Sbjct: 282 IEVVST 287
|
This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes [Amino acid biosynthesis, Glutamate family]. Length = 364 |
| >gnl|CDD|193530 cd05653, M20_ArgE_LysK, M20 Peptidase acetylornithine deacetylase/acetyl-lysine deacetylase | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 67/266 (25%), Positives = 101/266 (37%), Gaps = 51/266 (19%)
Query: 52 ASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE-PSKWS 110
++F+ + L E+ E A N ++ +K G P++LL H D VP P +
Sbjct: 23 LAEFLAEIMKELGFEAWIDE-AGN--VVAVKGSGG----PTVLLLGHIDTVPGFIPVRIE 75
Query: 111 HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170
G ++ RG+ D K + A R R V + +EE
Sbjct: 76 ----------GGVLYGRGAVDAKGPLAAMILAAARANEPL--GCRLV-VIGAVEEESSSK 122
Query: 171 DGAEKFADSHV-FNSLNVGIVLDE--GLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK 227
GA DS+ + + +G E G T YR L I+ G GH +
Sbjct: 123 -GARHLRDSYPRPDYVIIG----EPSGWDGITLGYRGRL------LLKIRCEGPSGHSSG 171
Query: 228 LYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNL 287
+N A+E+L + +++ E SV +K+GT SPNG
Sbjct: 172 PEEN-AIEDLIDAWNAIKE---------WLENYNSFEFDSVTPTLIKSGT-SPNG----- 215
Query: 288 QPSEAEAGFDIRVPPTTDAESLERRI 313
P EAE D+R+PP E L I
Sbjct: 216 TPEEAELTIDVRLPPGVSPEELLSEI 241
|
Peptidase M20 family, acetylornithine deacetylase (ArgE)/acetyl-lysine deacetylase (LysK) subfamily. Proteins in this subfamily are mainly archaeal with related bacterial species and are deacetylases with specificity for both N-acetyl-ornithine and N-acetyl-lysine found within a lysine biosynthesis operon. ArgE catalyzes the conversion of N-acetylornithine to ornithine, while LysK, a homolog of ArgE, has deacetylating activities for both N-acetyllysine and N-acetylornithine at almost equal efficiency. These results suggest that LysK which may share an ancestor with ArgE functions not only for lysine biosynthesis, but also for arginine biosynthesis in species such as Thermus thermophilus. The substrate specificity of ArgE is quite broad in that several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 341 |
| >gnl|CDD|236039 PRK07522, PRK07522, acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 6e-07
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRRL 146
I+L+ HTDVVP + W+ PF G ++ RG+ DMK L A+ L
Sbjct: 65 GGIVLSGHTDVVPVDGQAWTSDPFRLTERD-GRLYGRGTCDMKGFIAAA----LAAVPEL 119
Query: 147 KASGFQPVRSVYLSFVPDEEIG 168
A+ + R ++L+F DEE+G
Sbjct: 120 AAAPLR--RPLHLAFSYDEEVG 139
|
Length = 385 |
| >gnl|CDD|235965 PRK07205, PRK07205, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 85 GSNPQLPSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAI 143
G +L +IL H DVVP + S W PF A G +F RG+QD K M L A+
Sbjct: 72 GQGEELLAIL--CHLDVVPEGDLSDWQTPPFEAVE-KDGCLFGRGTQDDKGPSMAALYAV 128
Query: 144 RRLKASGFQPVRSVYLSFVPDEEI 167
+ L +G Q + + F DEE
Sbjct: 129 KALLDAGVQFNKRIRFIFGTDEET 152
|
Length = 444 |
| >gnl|CDD|236285 PRK08554, PRK08554, peptidase; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 52 ASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSH 111
KFI E+ +ES+ +E K+ + G P +L +H DVVP P +W+
Sbjct: 29 CPKFIKDTLESWGIESELIE--KDGYYAVYGEIGEG--KPKLLFMAHFDVVPVNPEEWNT 84
Query: 112 HPFGAHLDSQGN-IFARGSQDMKCVGMQYLEAIRRLKASGFQPVR-SVYLSFVPDEEIGG 169
PF L +G+ + RGS D K + A++ L +P+ V +F DEEIGG
Sbjct: 85 EPF--KLTVKGDKAYGRGSADDKGNVASVMLALKELSK---EPLNGKVIFAFTGDEEIGG 139
Query: 170 HDG---AEKFAD 178
AEK +
Sbjct: 140 AMAMHIAEKLRE 151
|
Length = 438 |
| >gnl|CDD|235802 PRK06446, PRK06446, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 92 SILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
++L+ +H DV P +P S+W PF A +++ G I+ARG+ D K M L AI+ L
Sbjct: 64 TLLIYNHYDVQPVDPLSEWKRDPFSATIEN-GRIYARGASDNKGTLMARLFAIKHLIDKH 122
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEG 194
V +V + +EEIG + E F + + N L V+ EG
Sbjct: 123 KLNV-NVKFLYEGEEEIGSPN-LEDFIEKNK-NKLKADSVIMEG 163
|
Length = 436 |
| >gnl|CDD|181495 PRK08596, PRK08596, acetylornithine deacetylase; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 5e-06
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 52 ASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLP-SILLNSHTDVVPSEPSK-W 109
A +FI L + N P ++ G+ S+++N H DV + W
Sbjct: 38 AQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLIINGHMDVAEVSADEAW 97
Query: 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQ-YLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168
+PF + G ++ RG+ DMK G+ L AI+ L +G + + V EE+G
Sbjct: 98 ETNPFEPTIK-DGWLYGRGAADMKG-GLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVG 155
|
Length = 421 |
| >gnl|CDD|193551 cd05676, M20_dipept_like_CNDP, M20 cytosolic nonspecific dipeptidases including anserinase and serum carnosinase | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 28 DSIIERFRAYLQI--DTSQPN--PDYTNASKFILAQAEAL-------SLESQTLEFAKNK 76
D I+R + I ++ P P+ +++ + + L L QTL +
Sbjct: 10 DEYIDRLAEAVAIPSVSADPEKRPEVIRMMEWVADRLKKLGATVELVDLGKQTLPGEELP 69
Query: 77 -PLILLKWPGSNPQLPSILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQDMKC 134
P ++L GS+P ++L+ H DV P++ W PF + G ++ RGS D K
Sbjct: 70 LPPVILGRLGSDPSKKTVLIYGHLDVQPAKLEDGWDTDPFTLT-EKDGKLYGRGSTDDKG 128
Query: 135 VGMQYLEAIRRLKASG 150
+ +L AI + G
Sbjct: 129 PVLGWLNAIEAYQKLG 144
|
Peptidase M20 family, CNDP (cytosolic nonspecific dipeptidase) subfamily including anserinase (Xaa-methyl-His dipeptidase, EC 3.4.13.5), 'serum' carnosinase (beta-alanyl-L-histidine dipeptidase; EC 3.4.13.20), and some uncharacterized proteins. Two genes, CN1 and CN2, coding for proteins that degrade carnosine (beta-alanyl-L-histidine) and homocarnosine (gamma-aminobutyric acid-L-histidine), two naturally occurring dipeptides with potential neuroprotective and neurotransmitter functions, have been identified. CN1 encodes for serum carnosinase and has narrow substrate specificity for Xaa-His dipeptides, where Xaa can be beta-alanine (carnosine), N-methyl beta-alanine, alanine, glycine and gamma-aminobutyric acid (homocarnosine). CN2 corresponds to the cytosolic nonspecific dipeptidase (CNDP; EC 3.4.13.18) and is not limited to Xaa-His dipeptides. CNDP requires Mn(2+) for full activity and does not hydrolyze homocarnosine. Anserinase is a dipeptidase that mainly catalyzes the hydrolysis of N-alpha-acetylhistidine. Length = 466 |
| >gnl|CDD|236379 PRK09104, PRK09104, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 16/153 (10%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNK------PLILL 81
D+ +ER A L+I + +P Y + A+ L + +L F + P+++
Sbjct: 17 DASLERLFALLRIPSISTDPAYAADCR---KAADWLVADLASLGFEASVRDTPGHPMVVA 73
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGN----IFARGSQDMKCVG 136
G P +L H DV P +P W PF + + I ARG+ D K
Sbjct: 74 HHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQL 133
Query: 137 MQYLEAIRRLKA-SGFQPVRSVYLSFVPDEEIG 168
M ++EA R KA +G PVR L F +EE G
Sbjct: 134 MTFVEACRAWKAVTGSLPVRVTIL-FEGEEESG 165
|
Length = 464 |
| >gnl|CDD|193553 cd05678, M20_dipept_like_1, Uncharacterized M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 27/163 (16%)
Query: 30 IIERFRAYLQI--DTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN 87
+ FR L I D + P NA ++ E +Q L PL+L + P +
Sbjct: 1 SLPEFRELLSIPNDATDPADIQKNA-DWLEKAFEKRGFTTQRLP-TGGLPLLLAERP-TA 57
Query: 88 PQLPSILLNSHTDVVPSEPSKW-SHHPF---------------------GAHLDSQGNIF 125
+IL +H D P +PSKW PF +D + IF
Sbjct: 58 GARKTILFYAHFDGQPVDPSKWDQKSPFTPVLKEKDADGNWTLPNWDLLKQEIDPEWRIF 117
Query: 126 ARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168
AR + D K + +L A+ LKA+G P ++ + +EE G
Sbjct: 118 ARSASDDKGPIIMFLAALDALKAAGIPPAVNIKVILDSEEEKG 160
|
Peptidase M20 family, unknown dipeptidase-like subfamily 1 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 466 |
| >gnl|CDD|193509 cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 98 HTDVVPSEPSKWSHHPFGAHL-DSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRS 156
H DVVP W+ PF + D G ++ RG+ D K + L A++ LK G +
Sbjct: 79 HLDVVP-AGEGWTTDPFEPTIKD--GKLYGRGTSDDKGPAIAALYALKALKDLGLPLKKR 135
Query: 157 VYLSFVPDEEIG 168
+ L F DEE G
Sbjct: 136 IRLIFGTDEESG 147
|
Peptidase M20 family, Peptidase V (Xaa-His dipeptidase; PepV g.p. (Lactobacillus lactis); X-His dipeptidase; beta-Ala-His dipeptidase; carnosinase) subfamily. The PepV group of proteins is widely distributed in lactic acid bacteria. PepV, along with PepT, functions at the end of the proteolytic processing system. PepV is a monomeric metalloenzyme that preferentially degrades hydrophobic dipeptides. The Streptococcus gordonii PepV gene is homologous to the PepV gene family from Lactobacillus and Lactococcus spp. PepV recognizes and fixes the dipeptide backbone, while the side chains are not specifically probed and can vary, rendering it a nonspecific dipeptidase. It has been shown that Lactococcus lactis subspecies lactis (L9) PepV does not hydrolyze dipeptides containing Pro or D-amino acids at the C-terminal, while PepV from Lactobaccilus has been shown to have L-carnosine hydrolyzing activity. The mammalian PepV also acts on anserine and homocarnosine (but not on homoanserine), and to a lesser extent on some other aminoacyl-L-histidine dipeptides. Length = 453 |
| >gnl|CDD|183836 PRK13004, PRK13004, peptidase; Reviewed | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 85 GSNPQLPSILLNSHTDVVP-SEPSKWSHHPFGAHLDSQGNIFARGSQDMK 133
G +L I ++H D V + W PF D G I+ RG+ D K
Sbjct: 66 GHGKKL--IAFDAHIDTVGIGDIKNWDFDPFEGEED-DGRIYGRGTSDQK 112
|
Length = 399 |
| >gnl|CDD|193506 cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 31/120 (25%), Positives = 43/120 (35%), Gaps = 23/120 (19%)
Query: 58 AQAEALSLESQTLEFAKNK-PLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGA 116
+ EAL E + + ++ + G P ILL H D V P G
Sbjct: 30 EELEALGFEVERIPGPDEFGDHLVATFKGGGG--PRILLLGHLDTV---------FPKG- 77
Query: 117 HLDSQ------GNIFARGSQDMK--CVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168
L + + G DMK V L A++ LKA G + + DEEIG
Sbjct: 78 TLAFRPFRVDGDRAYGPGVADMKGGIVVA--LYALKALKALGLLDDLPITVLLNSDEEIG 135
|
Peptidase M20 family, Glutamate carboxypeptidase (carboxypeptidase G; carboxypeptidase G1; carboxypeptidase G2; CPDG2; CPG2; Folate hydrolase G2; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; E.C. 3.4.17.11) subfamily. CPDG2 is a periplasmic enzyme that is synthesized with a signal peptide. It is a dimeric zinc-dependent exopeptidase, with two domains, a catalytic domain, which provides the ligands for the two zinc ions in the active site, and a dimerization domain. CPDG2 cleaves the C-terminal glutamate moiety from a wide range of N-acyl groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl, and pteroyl groups to release benzoic acid, phenol, and aniline mustards. It is used clinically to treat methotrexate toxicity by hydrolyzing it to inactive and non-toxic metabolites. It is also proposed for use in antibody-directed enzyme prodrug therapy; for example, glutamate can be cleaved from glutamated benzoyl nitrogen mustards, producing nitrogen mustards with effective cytotoxicity against tumor cells. Length = 363 |
| >gnl|CDD|169276 PRK08201, PRK08201, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 28 DSIIERFRAYLQIDT----SQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKW 83
++ +E + +L+I + S+ D A++++ E LE + P++ W
Sbjct: 14 EAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADW 73
Query: 84 PGSNPQLPSILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEA 142
P P++L+ H DV P +P W PF + G ++ARG+ D K +L+A
Sbjct: 74 L-HAPGKPTVLIYGHYDVQPVDPLNLWETPPFEPTI-RDGKLYARGASDDKGQVFMHLKA 131
Query: 143 IRR-LKASGFQPVRSVYLSFVPDEEIG 168
+ LK G PV +V +EEIG
Sbjct: 132 VEALLKVEGTLPV-NVKFCIEGEEEIG 157
|
Length = 456 |
| >gnl|CDD|235346 PRK05111, PRK05111, acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 29 SIIERFRAYLQIDT---SQPNPDYTNASKFI--LAQ-AEAL--SLESQTLEFAKNKPLIL 80
S IE +RA + + + P D +N + I LA E L ++E Q + + K L
Sbjct: 6 SFIEMYRALIATPSISATDPALDQSNRA-VIDLLAGWFEDLGFNVEIQPVPGTRGK-FNL 63
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGN-IFARGSQDMKCVGMQY 139
L GS +LL HTD VP + +W+ PF L ++ G+ DMK
Sbjct: 64 LASLGSGEG--GLLLAGHTDTVPFDEGRWTRDPF--TLTEHDGKLYGLGTADMKGFFAFI 119
Query: 140 LEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
LEA+R + + + + +Y+ DEE GA FA++
Sbjct: 120 LEALRDIDLTKLK--KPLYILATADEE-TSMAGARAFAEAT 157
|
Length = 383 |
| >gnl|CDD|168961 PRK07473, PRK07473, carboxypeptidase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 6e-05
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGA----HLDSQGN-IFARGSQDMKCVG 136
++P P IL+ H D V HP G +GN + G DMK
Sbjct: 67 RFPHPRQGEPGILIAGHMDTV---------HPVGTLEKLPWRREGNKCYGPGILDMKGGN 117
Query: 137 MQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168
LEAIR+L +G + + F PDEE+G
Sbjct: 118 YLALEAIRQLARAGITTPLPITVLFTPDEEVG 149
|
Length = 376 |
| >gnl|CDD|193516 cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 35/183 (19%)
Query: 52 ASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSH 111
++++ + L LE ++ N ++ + GS PS+LL++H D V E + +
Sbjct: 20 RAEYVAERLRELGLEDVYIDERGN---VIGRRKGSGG-GPSLLLSAHLDTVFPEGTDVT- 74
Query: 112 HPFGAHLDSQGNIFARGSQDMKCVGMQ-YLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170
+ G ++ G D G+ L A R L+A+G + + EE G
Sbjct: 75 ----VRREG-GRLYGPGIGDDTA-GLAALLAAARALRAAGIELAGDLLFVANVGEEGLGD 128
Query: 171 DGAEKF--------ADSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGA 221
+ D + + + G + G+ S I G
Sbjct: 129 LRGVRHLFDHGGVAIDGFIAIDGTDPGRITHGGVGSR--------------RFRITFSGP 174
Query: 222 PGH 224
GH
Sbjct: 175 GGH 177
|
Peptidase M20 family, Poly(aspartic acid) hydrolase (PAA hydrolase)-like subfamily. PAA hydrolase enzymes are involved in alpha,beta-poly(D,L-aspartic acid) (tPAA) biodegradation. PAA is being extensively studied as a replacement for commercial polycarboxylate components since it can be degraded by enzymes from isolated tPAA degrading bacteria. Thus far, two types of PAA degrading bacteria (Sphingomonas sp. KT-1 and Pedobacter sp. KP-2) have been investigated in detail; the former can completely degrade tPAA of low-molecular weights below 5000, while the latter can degrade high molecular weight tPAA to release oligo(aspartic acid) (OAA) as a product, suggesting two kinds of PAA degrading enzymes. It has been shown that PAA hydrolase-1 from Sphingomonas sp. KT-1 hydrolyzes beta,beta-aspartic acid units in tPAA to produce OAA, and it is suggested that PAA hydrolase-2 hydrolyzes OAA to aspartic acid. Length = 359 |
| >gnl|CDD|193513 cd03893, M20_Dipept_like, M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 77 PLILLKWPGSNPQLPSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCV 135
P +L P P++LL +H DV P+ + W PF + G ++ RG+ D K
Sbjct: 52 PAVLAHRPAP-EGAPTVLLYAHYDVQPAGDEDAWDSDPFTL-TERDGRLYGRGAADDKGG 109
Query: 136 GMQYLEAIRRLKASGFQPVRSVYLSFVPD--EEIGGHDGAEKFADSH 180
+L A+R L G PV + + + EEIG G E + H
Sbjct: 110 IAAHLAALRALGGLGDLPVG---VKVIIEGEEEIGS-PGLEALLEEH 152
|
Peptidase M20 family, dipeptidase-like subfamily. This group contains a large variety of enzymes, including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase), canosinase, DUG2 type proteins, as well as many proteins inferred by homology to be dipeptidases. These enzymes have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Substrates of CNDP are varied and not limited to Xaa-His dipeptides. DUG2 proteins contain a metallopeptidase domain and a large N-terminal WD40 repeat region, and are involved in the alternative pathway of glutathione degradation. Length = 428 |
| >gnl|CDD|130941 TIGR01886, dipeptidase, dipeptidase PepV | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSV 157
H DVVP+ W+ PF +D +G I+ARG+ D K + A++ LK G P + +
Sbjct: 86 HMDVVPAG-EGWTRDPFEPEID-EGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKI 143
Query: 158 YLSFVPDEEIG 168
+EE G
Sbjct: 144 RFVVGTNEETG 154
|
This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme , has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 466 |
| >gnl|CDD|235988 PRK07318, PRK07318, dipeptidase PepV; Reviewed | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSV 157
H DVVP W P+ + G I+ARG+ D K M A++ +K G + V
Sbjct: 87 HLDVVP-AGDGWDTDPYEPVI-KDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKV 144
Query: 158 YLSFVPDEEIGGHD 171
DEE G
Sbjct: 145 RFIVGTDEESGWKC 158
|
Length = 466 |
| >gnl|CDD|193556 cd05681, M20_dipept_like_4, Uncharacterized M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 31 IERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQ 89
+E R L+I + S N ++ + E L E + L P++ ++ +
Sbjct: 2 LEDLRELLRIPSVSAQNRGIEETAELLKELLEELGAEVEILP-TDGHPVVYAEFDSGAAK 60
Query: 90 LPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR-LK 147
++L +H DV P+EP +W PF + G ++ARG+ D K M L A+R L
Sbjct: 61 --TLLFYNHYDVQPAEPLEEWQSDPFALT-ERGGKLYARGAADDKGELMARLAALRAYLA 117
Query: 148 ASGFQPVRSVYLSFVPD--EEIG 168
G PV + F+ + EE+G
Sbjct: 118 EHGKLPVN---IKFLVEGEEEVG 137
|
Peptidase M20 family, unknown dipeptidase-like subfamily 3 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 430 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 356 | |||
| KOG2275 | 420 | consensus Aminoacylase ACY1 and related metalloexo | 100.0 | |
| TIGR01880 | 400 | Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase | 100.0 | |
| PRK08588 | 377 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| PRK09133 | 472 | hypothetical protein; Provisional | 100.0 | |
| PRK13013 | 427 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| PRK13983 | 400 | diaminopimelate aminotransferase; Provisional | 100.0 | |
| TIGR01910 | 375 | DapE-ArgE acetylornithine deacetylase or succinyl- | 100.0 | |
| PRK06915 | 422 | acetylornithine deacetylase; Validated | 100.0 | |
| PRK06837 | 427 | acetylornithine deacetylase; Provisional | 100.0 | |
| PRK05111 | 383 | acetylornithine deacetylase; Provisional | 100.0 | |
| PRK06446 | 436 | hypothetical protein; Provisional | 100.0 | |
| PRK07906 | 426 | hypothetical protein; Provisional | 100.0 | |
| PRK08201 | 456 | hypothetical protein; Provisional | 100.0 | |
| PRK08596 | 421 | acetylornithine deacetylase; Validated | 100.0 | |
| PRK07522 | 385 | acetylornithine deacetylase; Provisional | 100.0 | |
| TIGR01892 | 364 | AcOrn-deacetyl acetylornithine deacetylase (ArgE). | 100.0 | |
| PRK13009 | 375 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| PRK06133 | 410 | glutamate carboxypeptidase; Reviewed | 100.0 | |
| TIGR01246 | 370 | dapE_proteo succinyl-diaminopimelate desuccinylase | 100.0 | |
| PRK08262 | 486 | hypothetical protein; Provisional | 100.0 | |
| PRK07907 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK09104 | 464 | hypothetical protein; Validated | 100.0 | |
| PRK08651 | 394 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| PRK08737 | 364 | acetylornithine deacetylase; Provisional | 100.0 | |
| TIGR03320 | 395 | ygeY M20/DapE family protein YgeY. Members of this | 100.0 | |
| PRK07473 | 376 | carboxypeptidase; Provisional | 100.0 | |
| PRK13004 | 399 | peptidase; Reviewed | 100.0 | |
| PRK07338 | 402 | hypothetical protein; Provisional | 100.0 | |
| TIGR03526 | 395 | selenium_YgeY putative selenium metabolism hydrola | 100.0 | |
| PRK07079 | 469 | hypothetical protein; Provisional | 100.0 | |
| TIGR01900 | 373 | dapE-gram_pos succinyl-diaminopimelate desuccinyla | 100.0 | |
| COG0624 | 409 | ArgE Acetylornithine deacetylase/Succinyl-diaminop | 100.0 | |
| PRK00466 | 346 | acetyl-lysine deacetylase; Validated | 100.0 | |
| PRK13007 | 352 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| TIGR01886 | 466 | dipeptidase dipeptidase PepV. This model represent | 100.0 | |
| PRK08652 | 347 | acetylornithine deacetylase; Provisional | 100.0 | |
| PRK07205 | 444 | hypothetical protein; Provisional | 100.0 | |
| PRK04443 | 348 | acetyl-lysine deacetylase; Provisional | 100.0 | |
| PRK07318 | 466 | dipeptidase PepV; Reviewed | 100.0 | |
| TIGR01891 | 363 | amidohydrolases amidohydrolase. This model represe | 100.0 | |
| PLN02280 | 478 | IAA-amino acid hydrolase | 100.0 | |
| PRK06156 | 520 | hypothetical protein; Provisional | 100.0 | |
| TIGR01883 | 361 | PepT-like peptidase T-like protein. This model rep | 100.0 | |
| PLN02693 | 437 | IAA-amino acid hydrolase | 100.0 | |
| TIGR01902 | 336 | dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d | 100.0 | |
| TIGR01887 | 447 | dipeptidaselike dipeptidase, putative. This model | 100.0 | |
| PRK13381 | 404 | peptidase T; Provisional | 100.0 | |
| COG1473 | 392 | AbgB Metal-dependent amidase/aminoacylase/carboxyp | 100.0 | |
| KOG2276 | 473 | consensus Metalloexopeptidases [Amino acid transpo | 100.0 | |
| TIGR01893 | 477 | aa-his-dipept aminoacyl-histidine dipeptidase. | 100.0 | |
| PRK15026 | 485 | aminoacyl-histidine dipeptidase; Provisional | 100.0 | |
| PRK05469 | 408 | peptidase T; Provisional | 100.0 | |
| PRK12892 | 412 | allantoate amidohydrolase; Reviewed | 100.0 | |
| PRK12893 | 412 | allantoate amidohydrolase; Reviewed | 100.0 | |
| PRK12891 | 414 | allantoate amidohydrolase; Reviewed | 100.0 | |
| PRK09290 | 413 | allantoate amidohydrolase; Reviewed | 100.0 | |
| PRK08554 | 438 | peptidase; Reviewed | 100.0 | |
| TIGR01882 | 410 | peptidase-T peptidase T. This model represents a t | 100.0 | |
| PRK12890 | 414 | allantoate amidohydrolase; Reviewed | 100.0 | |
| TIGR03176 | 406 | AllC allantoate amidohydrolase. This enzyme cataly | 100.0 | |
| TIGR01879 | 401 | hydantase amidase, hydantoinase/carbamoylase famil | 99.98 | |
| PRK13590 | 591 | putative bifunctional OHCU decarboxylase/allantoat | 99.97 | |
| PRK13799 | 591 | unknown domain/N-carbamoyl-L-amino acid hydrolase | 99.97 | |
| COG4187 | 553 | RocB Arginine degradation protein (predicted deacy | 99.83 | |
| PRK10199 | 346 | alkaline phosphatase isozyme conversion aminopepti | 99.79 | |
| PF01546 | 189 | Peptidase_M20: Peptidase family M20/M25/M40 This f | 99.78 | |
| TIGR03106 | 343 | trio_M42_hydro hydrolase, peptidase M42 family. Th | 99.68 | |
| COG2195 | 414 | PepD Di- and tripeptidases [Amino acid transport a | 99.57 | |
| COG1363 | 355 | FrvX Cellulase M and related proteins [Carbohydrat | 99.56 | |
| PF07687 | 111 | M20_dimer: Peptidase dimerisation domain This fami | 99.56 | |
| TIGR03107 | 350 | glu_aminopep glutamyl aminopeptidase. This model r | 99.55 | |
| PRK09961 | 344 | exoaminopeptidase; Provisional | 99.52 | |
| PRK09864 | 356 | putative peptidase; Provisional | 99.49 | |
| KOG2194 | 834 | consensus Aminopeptidases of the M20 family [Postt | 99.02 | |
| PF04389 | 179 | Peptidase_M28: Peptidase family M28; InterPro: IPR | 98.96 | |
| PF05343 | 292 | Peptidase_M42: M42 glutamyl aminopeptidase; InterP | 98.83 | |
| COG2234 | 435 | Iap Predicted aminopeptidases [General function pr | 98.01 | |
| KOG3946 | 338 | consensus Glutaminyl cyclase [Posttranslational mo | 97.89 | |
| KOG2195 | 702 | consensus Transferrin receptor and related protein | 97.79 | |
| KOG2526 | 555 | consensus Predicted aminopeptidases - M20/M25/M40 | 97.61 | |
| PF05450 | 234 | Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri | 96.43 | |
| COG4882 | 486 | Predicted aminopeptidase, Iap family [General func | 95.56 | |
| cd00433 | 468 | Peptidase_M17 Cytosol aminopeptidase family, N-ter | 93.81 | |
| PRK05015 | 424 | aminopeptidase B; Provisional | 93.09 | |
| PF00883 | 311 | Peptidase_M17: Cytosol aminopeptidase family, cata | 92.68 | |
| PRK02256 | 462 | putative aminopeptidase 1; Provisional | 91.1 | |
| PTZ00412 | 569 | leucyl aminopeptidase; Provisional | 90.48 | |
| TIGR01893 | 477 | aa-his-dipept aminoacyl-histidine dipeptidase. | 89.22 | |
| PRK02813 | 428 | putative aminopeptidase 2; Provisional | 85.94 | |
| PRK00913 | 483 | multifunctional aminopeptidase A; Provisional | 84.99 | |
| PTZ00371 | 465 | aspartyl aminopeptidase; Provisional | 82.31 |
| >KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-48 Score=354.63 Aligned_cols=301 Identities=49% Similarity=0.844 Sum_probs=273.9
Q ss_pred CChhHHHHHHHhhhcccCCCCCcChh-HHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCC
Q 018435 25 KSDDSIIERFRAYLQIDTSQPNPDYT-NASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP 103 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~e~-~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp 103 (356)
...+..++.++++++|||+.|.++.. .+++++....+.+|+.++.+....+.++++.+|+|++|..+.|+|++|+||||
T Consensus 22 ~e~~~~v~~f~eylRi~Tv~p~~dy~~a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~silL~SH~DVVP 101 (420)
T KOG2275|consen 22 HEENISVTRFREYLRIPTVQPNPDYTIACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELPSILLNSHTDVVP 101 (420)
T ss_pred cccchHHHHHHHHhhccccccCCCccHHHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCccceeeeccccccC
Confidence 33678999999999999998877777 99999999999999999988888889999999999999999999999999999
Q ss_pred CCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccccc
Q 018435 104 SEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN 183 (356)
Q Consensus 104 ~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~ 183 (356)
+..+.|+++||++..+++|.|||||++|||..+++.|+|++.|+..+..++++|.+.|.+|||.|+..|++.+.+..+++
T Consensus 102 ~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~~~~~~ 181 (420)
T KOG2275|consen 102 VFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAKTEEFK 181 (420)
T ss_pred CCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhhhhhhc
Confidence 98899999999998778999999999999999999999999999999999999999999999998778999999977788
Q ss_pred CCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHHHHHcchhhhHHHHHhc-cccc
Q 018435 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG-LKAE 262 (356)
Q Consensus 184 ~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 262 (356)
+...++++|+|+..++....+++++||.+|++|++.|.+||+|.|....++.++..+++.+.++++.|.+.+.+. ....
T Consensus 182 ~l~~~filDEG~~se~d~~~vfyaEkg~w~~~v~~~G~~GHss~~~~nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~~~ 261 (420)
T KOG2275|consen 182 KLNLGFILDEGGATENDFATVFYAEKGPWWLKVTANGTPGHSSYPPPNTAIEKLEKLVESLEEFREKQVDLLASGPKLAL 261 (420)
T ss_pred ccceeEEecCCCCCcccceeEEEEeeceeEEEEEecCCCCCCCCCCCccHHHHHHHHHHHHHHhHHHHHHHhhcCCceec
Confidence 888999999998777777788999999999999999999999999999999999999999999998888777653 3445
Q ss_pred CCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEEee
Q 018435 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVVIN 331 (356)
Q Consensus 263 ~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~ 331 (356)
+..+|+|++.++||. +.|++|+.+++.+|+|..+..+..++.+++.+.++. ...++++++.+.
T Consensus 262 ~~vtT~Nv~~i~GGv------~~N~~P~~~ea~~dirv~~~~d~~~i~~~l~~~w~~~~~eg~t~~f~~~ 325 (420)
T KOG2275|consen 262 GDVTTINVGIINGGV------QSNVLPETFEAAFDIRVRPHVDVKAIRDQLEDEWAEEAGEGVTLEFSQK 325 (420)
T ss_pred cceeEEeeeeeeccc------ccCcCchhheeeeeeEeccCCCHHHHHHHHHHHhhhhcCCceEEeccCc
Confidence 678999999999999 999999999999999999999999999999656663 345577776554
|
|
| >TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=370.25 Aligned_cols=298 Identities=58% Similarity=0.987 Sum_probs=249.6
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
..++++++|++|++|||+++..++.+++++|.++|+++|++++.++...+.+|+++.++|+++.+|+|+|+|||||||++
T Consensus 7 ~~~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~ 86 (400)
T TIGR01880 7 EEDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPVF 86 (400)
T ss_pred chHHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCCC
Confidence 35889999999999999976556789999999999999999887665556889999998865545899999999999997
Q ss_pred CCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCC
Q 018435 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (356)
Q Consensus 106 ~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (356)
+..|+++||.+.++++|++||||++|||++++++|.|++.|++.+..++++|.|+|+++||.|+..|++++++++.+...
T Consensus 87 ~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~~~~ 166 (400)
T TIGR01880 87 REHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKAL 166 (400)
T ss_pred cccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhHHHHHHHhhhccCC
Confidence 77899999999763589999999999999999999999999998888899999999999999865699999987656556
Q ss_pred ceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHHHHHcchhhhHHHHHhc-ccccCC
Q 018435 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG-LKAEGE 264 (356)
Q Consensus 186 ~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~ 264 (356)
+.+++++.+...|++...++.+++|..+++|+++|+++|++.+...||+..++.++..|.++...+...+... ....+.
T Consensus 167 ~~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~G~~~Hs~~~~~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 246 (400)
T TIGR01880 167 NLGFALDEGLASPDDVYRVFYAERVPWWVVVTAPGNPGHGSKLMENTAMEKLEKSVESIRRFRESQFQLLQSNPDLAIGD 246 (400)
T ss_pred ceEEEEcCCCcccccccceeEEeeEEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHhcCccccccc
Confidence 7788888776566655689999999999999999999999987655999999999998887654332222211 011123
Q ss_pred ceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEE
Q 018435 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVV 329 (356)
Q Consensus 265 ~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (356)
.++++++.++||. ..|+||++|++.+|+|++|.++.+++.++|++.+.....++++++.
T Consensus 247 ~~t~~v~~i~gG~------~~nvIP~~a~~~~diR~~p~~~~~~~~~~i~~~i~~~~~~~~~~~~ 305 (400)
T TIGR01880 247 VTSVNLTKLKGGV------QSNVIPSEAEAGFDIRLAPSVDFEEMENRLDEWCADAGEGVTYEFS 305 (400)
T ss_pred cceeecceeccCC------cCCcCCCccEEEEEEeeCCCCCHHHHHHHHHHHHhccCCceEEEEe
Confidence 4799999999998 8999999999999999999999999999999887632345666654
|
This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids. |
| >PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=352.06 Aligned_cols=278 Identities=20% Similarity=0.301 Sum_probs=234.7
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC-
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP- 106 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~- 106 (356)
++++++|++|++|||+ +++|.+++++|.++|+++|++++.++..++.+|+++.+ |.+ .|+|+|+||+||||+++
T Consensus 2 ~~~~~~l~~Lv~i~s~--s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~-g~~--~~~il~~~H~DtVp~~~~ 76 (377)
T PRK08588 2 EEKIQILADIVKINSV--NDNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEI-GSG--SPVLALSGHMDVVAAGDV 76 (377)
T ss_pred hHHHHHHHHHhcCCCC--CCcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEe-CCC--CceEEEEeeecccCCCCc
Confidence 5789999999999997 56899999999999999999988766666788999998 443 38999999999999964
Q ss_pred CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCc
Q 018435 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (356)
Q Consensus 107 ~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~ 186 (356)
++|+++||.+.+ ++|++||||++|||++++++|.|++.|++.+..++++|.|+|+++||.|+ .|++++++++.+.+.+
T Consensus 77 ~~w~~~Pf~~~~-~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~-~G~~~~~~~~~~~~~d 154 (377)
T PRK08588 77 DKWTYDPFELTE-KDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGE-LGAKQLTEKGYADDLD 154 (377)
T ss_pred ccCcCCCCCeEE-ECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCc-hhHHHHHhcCccCCCC
Confidence 789999999998 99999999999999999999999999999888888999999999999986 6999999987666667
Q ss_pred eEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCc
Q 018435 187 VGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV 265 (356)
Q Consensus 187 ~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 265 (356)
.+++. +|+ ...++++++|..+++|+++|+++|++.|+.+ ||+..+++++..+.++... +... ......
T Consensus 155 ~~i~~-----ep~-~~~i~~~~~G~~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~----~~~~-~~~~~~ 223 (377)
T PRK08588 155 ALIIG-----EPS-GHGIVYAHKGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEYFDS----IKKH-NPYLGG 223 (377)
T ss_pred EEEEe-----cCC-CceeEEEEEEEEEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHHhhh----hccc-CccCCC
Confidence 65554 344 2478899999999999999999999999999 9999999999998765321 1100 001134
Q ss_pred eeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 266 ~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
++++++.++||. ..|+||++|++++|+|+.|.++.+++.++|++++.. ...++++++.
T Consensus 224 ~t~~v~~i~gG~------~~nvip~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~~~ 283 (377)
T PRK08588 224 LTHVVTIINGGE------QVNSVPDEAELEFNIRTIPEYDNDQVISLLQEIINEVNQNGAAQLSLD 283 (377)
T ss_pred CceeeeEEeCCC------cCCcCCCeEEEEEEeccCCCCCHHHHHHHHHHHHHHHhhccCCceEEE
Confidence 799999999998 999999999999999999999999999999987762 2234445444
|
|
| >PRK09133 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=362.74 Aligned_cols=293 Identities=20% Similarity=0.318 Sum_probs=235.5
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEee---cCCCceEEEEecCCCCCCCcEEEEeec
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF---AKNKPLILLKWPGSNPQLPSILLNSHT 99 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~---~~~~~nv~~~~~g~~~~~~~il~~aH~ 99 (356)
.....++++++|++|++|||+++.+++.++++||.++|+++|++++.++. .++++|+++.++|+++ .++|+|+|||
T Consensus 32 ~~~~~~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~-~~~lll~~H~ 110 (472)
T PRK09133 32 PTADQQAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDP-KKPILLLAHM 110 (472)
T ss_pred cchhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCC-CCcEEEEeec
Confidence 44567899999999999999976678899999999999999998654442 3467999999987654 3789999999
Q ss_pred ccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccc-cCccccHHHHhc
Q 018435 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE-IGGHDGAEKFAD 178 (356)
Q Consensus 100 Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE-~g~~~G~~~~~~ 178 (356)
||||+++++|+++||++++ +||++||||++|||++++++|++++.|++.+..++++|.|+|+++|| +|+ .|++++++
T Consensus 111 DtVp~~~~~W~~dPf~~~~-~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~-~G~~~l~~ 188 (472)
T PRK09133 111 DVVEAKREDWTRDPFKLVE-ENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILALTGDEEGTPM-NGVAWLAE 188 (472)
T ss_pred ccCCCChhcCCCCCCcceE-eCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCcc-chHHHHHH
Confidence 9999977789999999999 99999999999999999999999999999887889999999999999 664 79999997
Q ss_pred ccc-ccCCceEEEEecCc------cCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHHHHHcchhh-
Q 018435 179 SHV-FNSLNVGIVLDEGL------ASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRAS- 250 (356)
Q Consensus 179 ~~~-~~~~~~~~~~~~g~------~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~~i~~~~~~- 250 (356)
+.. ....+++++ +.+. .+|+ ...++.+++|..+++|+++|+++|++.|+..||+..+++++..+.++...
T Consensus 189 ~~~~~~~~~~~i~-e~~~~~~~~~gept-~~~i~~g~kG~~~~~i~v~G~~~Hss~p~~~nAi~~l~~~l~~l~~~~~~~ 266 (472)
T PRK09133 189 NHRDLIDAEFALN-EGGGGTLDEDGKPV-LLTVQAGEKTYADFRLEVTNPGGHSSRPTKDNAIYRLAAALSRLAAYRFPV 266 (472)
T ss_pred HHhhccCeEEEEE-CCCccccCCCCCce-EEEeeeecceeEEEEEEEecCCCCCCCCCCCChHHHHHHHHHHHhhCCCCC
Confidence 632 113455555 4332 2333 24577899999999999999999999987559999999999998764210
Q ss_pred --------hHHH---------------H-------------H-hcccccCCceeeeEeeeecCCCCCCCccccccCCeEE
Q 018435 251 --------QFDL---------------V-------------K-AGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAE 293 (356)
Q Consensus 251 --------~~~~---------------~-------------~-~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~ 293 (356)
.+.. + . .........++++++.++||. ..|+||++|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gG~------~~NvVP~~a~ 340 (472)
T PRK09133 267 MLNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNAMLRTTCVATMLEGGH------AENALPQRAT 340 (472)
T ss_pred ccCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHHhcCcchhheeeeeEEeeEEecCC------cCccCCCceE
Confidence 0000 0 0 000000134789999999997 9999999999
Q ss_pred EEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEE
Q 018435 294 AGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEV 328 (356)
Q Consensus 294 ~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 328 (356)
+.+|+|++|.++.+++.++|++.+. . .++++++
T Consensus 341 ~~lDiR~~p~~~~e~v~~~I~~~i~-~-~~v~v~~ 373 (472)
T PRK09133 341 ANVNCRIFPGDTIEAVRATLKQVVA-D-PAIKITR 373 (472)
T ss_pred EEEEEEeCCchhHHHHHHHHHHHhc-C-CCEEEEE
Confidence 9999999999999999999998775 2 3455544
|
|
| >PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=357.07 Aligned_cols=299 Identities=20% Similarity=0.310 Sum_probs=235.7
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCc-ChhHHHHHHHHHHHHCCCceEEEeecC--------CCceEEEEecCCCCCCCcE
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFAK--------NKPLILLKWPGSNPQLPSI 93 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~-~e~~~~~~l~~~l~~~g~~~~~~~~~~--------~~~nv~~~~~g~~~~~~~i 93 (356)
++...++++++|++|++|||.++.+ +|.++++||.++|+++|++++.++..+ +++|++++++|+.+ .|+|
T Consensus 9 ~~~~~~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~-~~~i 87 (427)
T PRK13013 9 IEARRDDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGARD-GDCV 87 (427)
T ss_pred HHHhHHHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCCCC-CCEE
Confidence 4556789999999999999987654 568999999999999999988764321 25699999977643 4789
Q ss_pred EEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccH
Q 018435 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (356)
Q Consensus 94 l~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (356)
+|++|+||||++ +.|+++||++.+ +||+|||||++|||++++++|.|++.|++.+..++++|.|+|+++||+|+..|.
T Consensus 88 ~l~gH~DvVp~~-~~W~~~Pf~~~~-~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~ 165 (427)
T PRK13013 88 HFNSHHDVVEVG-HGWTRDPFGGEV-KDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTADEESGGFGGV 165 (427)
T ss_pred EEEeccccCCCC-CCCcCCCCCceE-ECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCChhHH
Confidence 999999999986 679999999999 999999999999999999999999999998877889999999999999875578
Q ss_pred HHHhcccccc--CCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhh
Q 018435 174 EKFADSHVFN--SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRAS 250 (356)
Q Consensus 174 ~~~~~~~~~~--~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~ 250 (356)
+++++++.+. ..+.+++. +|++...+..+++|..+++|+++|+++|++.|+.+ ||+..+++++..+.++...
T Consensus 166 ~~l~~~~~~~~~~~d~~i~~-----ep~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l~~l~~~~~~ 240 (427)
T PRK13013 166 AYLAEQGRFSPDRVQHVIIP-----EPLNKDRICLGHRGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAVLAEIEERLFP 240 (427)
T ss_pred HHHHhcCCccccCCCEEEEe-----cCCCCCceEEeeeeEEEEEEEEEccccccCCCCcCcCHHHHHHHHHHHHHHHhhh
Confidence 8888776554 34666654 35443468899999999999999999999999999 9999999999998653211
Q ss_pred hHHHHHhccc---ccCCceeeeEeeeecCCCCC----CCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc---C
Q 018435 251 QFDLVKAGLK---AEGEVVSVNMAFLKAGTPSP----NGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP---A 320 (356)
Q Consensus 251 ~~~~~~~~~~---~~~~~~~v~~~~i~~g~~~~----~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~---~ 320 (356)
.......... ......+++++.++||.... .....|+||++|++.+|+|++|.++.+++.++|++.+.. .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~~~~~~~~~~~n~IPd~a~~~idiR~~p~~~~~~v~~~i~~~i~~~~~~ 320 (427)
T PRK13013 241 LLATRRTAMPVVPEGARQSTLNINSIHGGEPEQDPDYTGLPAPCVADRCRIVIDRRFLIEEDLDEVKAEITALLERLKRA 320 (427)
T ss_pred hhhcccccCCCCCcccCCCceeeeEEeCCCccccccccccccccCCceEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHhh
Confidence 0000000000 01124789999999987210 000129999999999999999999999999999876652 2
Q ss_pred CCCceEEEE
Q 018435 321 SRNMTFEVV 329 (356)
Q Consensus 321 ~~~~~~~~~ 329 (356)
..++++++.
T Consensus 321 ~~~~~~~~~ 329 (427)
T PRK13013 321 RPGFAYEIR 329 (427)
T ss_pred CCCceeEEE
Confidence 335666654
|
|
| >PRK13983 diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=346.49 Aligned_cols=291 Identities=22% Similarity=0.330 Sum_probs=234.0
Q ss_pred ChhHHHHHHHhhhcccCCCCC---cChhHHHHHHHHHHHHCCCc-eEEEeecC----C--CceEEEEecCCCCCCCcEEE
Q 018435 26 SDDSIIERFRAYLQIDTSQPN---PDYTNASKFILAQAEALSLE-SQTLEFAK----N--KPLILLKWPGSNPQLPSILL 95 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~---~~e~~~~~~l~~~l~~~g~~-~~~~~~~~----~--~~nv~~~~~g~~~~~~~il~ 95 (356)
..++++++|++|++|||+++. .+|.+++++|.++|+++|++ ++.++..+ + .+|+++.++|..+ .++|+|
T Consensus 3 ~~~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~-~~~lll 81 (400)
T PRK13983 3 LRDEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDG-KRTLWI 81 (400)
T ss_pred hHHHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCC-CCeEEE
Confidence 457899999999999998753 35889999999999999998 77655332 1 6899999987543 369999
Q ss_pred EeecccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHH
Q 018435 96 NSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (356)
Q Consensus 96 ~aH~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (356)
+||+||||+++ +.|+.+||.+++ ++|++||||++|||++++++|.|++.|++.+..++++|.|+|+++||.|+..|++
T Consensus 82 ~~H~Dtvp~~~~~~W~~~p~~~~~-~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~~ 160 (400)
T PRK13983 82 ISHMDVVPPGDLSLWETDPFKPVV-KDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSKYGIQ 160 (400)
T ss_pred EeeccccCCCCcccccCCCCccee-eCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCcccHH
Confidence 99999999975 689999999999 8999999999999999999999999999988888999999999999988755899
Q ss_pred HHhcc--ccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHc-chhh
Q 018435 175 KFADS--HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRR-FRAS 250 (356)
Q Consensus 175 ~~~~~--~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~-~~~~ 250 (356)
++++. +.+...+.+++.+.+ .|++. .++.+++|..+++|+++|+++|++.|+.+ ||+..+++++..+.+ +...
T Consensus 161 ~~~~~~~~~~~~~d~~i~~~~~--~~~~~-~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~ 237 (400)
T PRK13983 161 YLLKKHPELFKKDDLILVPDAG--NPDGS-FIEIAEKSILWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALHEK 237 (400)
T ss_pred HHHhhcccccCCCCEEEEecCC--CCCCc-eeEEeecceEEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99976 445556777776543 35543 68899999999999999999999999998 999999999999876 3221
Q ss_pred hHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEE
Q 018435 251 QFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEV 328 (356)
Q Consensus 251 ~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~ 328 (356)
+......+ .....+++++.+.+|. .+.|+||++|++++|+|++|.++.+.+.++|++.+.. ...+.++++
T Consensus 238 -~~~~~~~~--~~~~~~~~~~~~~~g~-----~~~nvvp~~~~~~~diR~~p~~~~~~v~~~l~~~~~~~~~~~~~~v~~ 309 (400)
T PRK13983 238 -FNAKDPLF--DPPYSTFEPTKKEANV-----DNINTIPGRDVFYFDCRVLPDYDLDEVLKDIKEIADEFEEEYGVKIEV 309 (400)
T ss_pred -hccccccc--CCCCcccccceeecCC-----cCCcccCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhccccCcceeE
Confidence 11000000 0122466677777652 1789999999999999999999999999999987762 233445555
Q ss_pred E
Q 018435 329 V 329 (356)
Q Consensus 329 ~ 329 (356)
.
T Consensus 310 ~ 310 (400)
T PRK13983 310 E 310 (400)
T ss_pred E
Confidence 4
|
|
| >TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=347.05 Aligned_cols=281 Identities=20% Similarity=0.354 Sum_probs=233.1
Q ss_pred HHHHhhhcccCCC-CCcChhHHHHHHHHHHHHCCCceEEEeecCCCc----eEEEEecCCCCCCCcEEEEeecccCCCCC
Q 018435 32 ERFRAYLQIDTSQ-PNPDYTNASKFILAQAEALSLESQTLEFAKNKP----LILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (356)
Q Consensus 32 ~~l~~l~~i~s~s-~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~----nv~~~~~g~~~~~~~il~~aH~Dtvp~~~ 106 (356)
++|++|++|||++ ++++|.++++||.++|+++|++++.++...+.+ |+++.++|++ .+|+|+|+|||||||+++
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~ill~~H~DtVp~~~ 80 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNG-NEKSLIFNGHYDVVPAGD 80 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCC-CCCEEEEecccccccCCC
Confidence 6899999999977 467899999999999999999988765433333 4677777754 358999999999999965
Q ss_pred -CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCC
Q 018435 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (356)
Q Consensus 107 -~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (356)
++|+++||++.+ ++|++||||++|||++++++|++++.|++.+..++++|.|+|+++||.|+ .|++++++++.+++.
T Consensus 81 ~~~w~~~Pf~~~~-~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~-~G~~~~~~~~~~~~~ 158 (375)
T TIGR01910 81 LELWKTDPFKPVE-KDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGE-AGTLYLLQRGYFKDA 158 (375)
T ss_pred hhhCcCCCCCcEE-ECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCc-hhHHHHHHcCCCCCC
Confidence 799999999998 89999999999999999999999999999887788999999999999986 599999987655556
Q ss_pred ceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCC
Q 018435 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGE 264 (356)
Q Consensus 186 ~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 264 (356)
+.+++.+ |++...++++++|..+++|+++|+++|++.|+.+ ||+..+++++..|.++.......... .....
T Consensus 159 d~~i~~~-----~~~~~~v~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~--~~~~~ 231 (375)
T TIGR01910 159 DGVLIPE-----PSGGDNIVIGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEHIYARNSY--GFIPG 231 (375)
T ss_pred CEEEECC-----CCCCCceEEEecceEEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc--cccCC
Confidence 7776654 4434588999999999999999999999999998 99999999999998765321111000 01123
Q ss_pred ceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEE
Q 018435 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEV 328 (356)
Q Consensus 265 ~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~ 328 (356)
.++++++.++||. ..|+||++|++.+|+|+.|.++.+++.++|++.+.. ...++++++
T Consensus 232 ~~t~~i~~i~gG~------~~nviP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 291 (375)
T TIGR01910 232 PITFNPGVIKGGD------WVNSVPDYCEFSIDVRIIPEENLDEVKQIIEDVVKALSKSDGWLYEN 291 (375)
T ss_pred CccccceeEECCC------CcCcCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhcCcHHhhC
Confidence 5799999999998 999999999999999999999999999999987762 234455544
|
This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research. |
| >PRK06915 acetylornithine deacetylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=350.27 Aligned_cols=277 Identities=22% Similarity=0.376 Sum_probs=230.7
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeec-----------------CCCceEEEEecC
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA-----------------KNKPLILLKWPG 85 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~-----------------~~~~nv~~~~~g 85 (356)
++...+++++++++|++|||+ +++|.+++++|.++|+++|++++.+... .+++||++.++|
T Consensus 12 ~~~~~~~~~~~l~~lv~ips~--s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nlia~~~g 89 (422)
T PRK06915 12 IESHEEEAVKLLKRLIQEKSV--SGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSPNIVATLKG 89 (422)
T ss_pred HHhhHHHHHHHHHHHHhCCCC--CcchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCceEEEEEcC
Confidence 445567899999999999997 5789999999999999999998765432 246899999987
Q ss_pred CCCCCCcEEEEeecccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeec
Q 018435 86 SNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPD 164 (356)
Q Consensus 86 ~~~~~~~il~~aH~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~ 164 (356)
.++ .|+|+|+|||||||+++ .+|+++||++++ ++|++||||++|||++++++|.|++.|++.+..++++|.|+|+++
T Consensus 90 ~~~-~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~-~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v~~~~~~d 167 (422)
T PRK06915 90 SGG-GKSMILNGHIDVVPEGDVNQWDHHPYSGEV-IGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVIFQSVIE 167 (422)
T ss_pred CCC-CCeEEEEeeccccCCCCcccCcCCCCCceE-ECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc
Confidence 654 48999999999999975 689999999999 899999999999999999999999999998877889999999999
Q ss_pred cccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHH
Q 018435 165 EEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIES 243 (356)
Q Consensus 165 EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~ 243 (356)
||.|+ .|+.+++..+ + ..|.+++. +|++ ..++.+++|..+++|+++|+++|++.|+.+ ||+..+++++..
T Consensus 168 EE~g~-~G~~~~~~~~-~-~~d~~i~~-----ep~~-~~i~~~~~G~~~~~i~v~G~~~H~s~p~~g~nAi~~~~~~~~~ 238 (422)
T PRK06915 168 EESGG-AGTLAAILRG-Y-KADGAIIP-----EPTN-MKFFPKQQGSMWFRLHVKGKAAHGGTRYEGVSAIEKSMFVIDH 238 (422)
T ss_pred cccCC-cchHHHHhcC-c-CCCEEEEC-----CCCC-ccceeecccEEEEEEEEEeeccccCCCCcCcCHHHHHHHHHHH
Confidence 99886 5888877764 3 35665553 3543 468899999999999999999999999999 999999999999
Q ss_pred HHcchhhhHHHHHhc-ccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 244 VRRFRASQFDLVKAG-LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 244 i~~~~~~~~~~~~~~-~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
+.++........... +.......+++++.++||. ..|+||++|++.+|+|+.|.++.+++.++|++.+.
T Consensus 239 l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~------~~nvvP~~a~~~~d~R~~p~~~~~~v~~~i~~~l~ 308 (422)
T PRK06915 239 LRKLEEKRNDRITDPLYKGIPIPIPINIGKIEGGS------WPSSVPDSVILEGRCGIAPNETIEAAKEEFENWIA 308 (422)
T ss_pred HHHHHHHhccccCCCcccCCCCCceEeEEEeeCCC------CCCccCcEEEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 987653210000000 0111123589999999998 89999999999999999999999999999987665
|
|
| >PRK06837 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=349.29 Aligned_cols=280 Identities=20% Similarity=0.301 Sum_probs=233.2
Q ss_pred cCCCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeec-----------------CCCceEEEEe
Q 018435 21 SSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA-----------------KNKPLILLKW 83 (356)
Q Consensus 21 ~~~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~-----------------~~~~nv~~~~ 83 (356)
.+++.+.++++++|++|++|||+ +++|.++++||.++|+++|++++.++.. ++.+||++.+
T Consensus 13 ~~i~~~~~~~~~~l~~li~ipS~--s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~ 90 (427)
T PRK06837 13 AAVDAGFDAQVAFTQDLVRFPST--RGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSGAPNVVGTY 90 (427)
T ss_pred HHHHhhhHHHHHHHHHHhccCCC--CCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCCCceEEEEe
Confidence 34566789999999999999997 5689999999999999999998765432 3579999999
Q ss_pred cCCCCCCCcEEEEeecccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEe
Q 018435 84 PGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFV 162 (356)
Q Consensus 84 ~g~~~~~~~il~~aH~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~ 162 (356)
+|++++.|+|+|+|||||||+++ ++|+++||++++ ++|++||||++|||++++++|.|++.|++.+..++++|.|+|+
T Consensus 91 ~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~-~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~~i~~~~~ 169 (427)
T PRK06837 91 RPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVI-VDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAARVHFQSV 169 (427)
T ss_pred cCCCCCCCeEEEEeecccCCCCCccccccCCCCcEE-ECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEEEEE
Confidence 87665568999999999999976 789999999999 9999999999999999999999999999988888899999999
Q ss_pred eccccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHH
Q 018435 163 PDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSI 241 (356)
Q Consensus 163 ~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~ 241 (356)
++||.++ .|+..++..+. ..|.+++. +|+. ..++++++|..+++|+++|+++|++.|+.+ ||+..+++++
T Consensus 170 ~dEE~~g-~g~~~~~~~~~--~~d~~iv~-----ep~~-~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i 240 (427)
T PRK06837 170 IEEESTG-NGALSTLQRGY--RADACLIP-----EPTG-EKLVRAQVGVIWFRLRVRGAPVHVREAGTGANAIDAAYHLI 240 (427)
T ss_pred eccccCC-HhHHHHHhcCc--CCCEEEEc-----CCCC-CccccccceeEEEEEEEEeeccccCCcccCcCHHHHHHHHH
Confidence 9999876 47777776543 35666654 3443 478899999999999999999999999999 9999999999
Q ss_pred HHHHcchhhhHHH-HH-hcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 242 ESVRRFRASQFDL-VK-AGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 242 ~~i~~~~~~~~~~-~~-~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
..|.++....... .. ..+.......+++++.++||. ..|+||++|++.+++|+.|.++.+++.++|++.+.
T Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~~~~t~ni~~i~gG~------~~nvVP~~~~~~~~ir~~p~~~~~~v~~~i~~~~~ 313 (427)
T PRK06837 241 QALRELEAEWNARKASDPHFEDVPHPINFNVGIIKGGD------WASSVPAWCDLDCRIAIYPGVTAADAQAEIEACLA 313 (427)
T ss_pred HHHHHHHHHHhhcccCCCcccCCCCceeEeeeeEeCCC------CCCccCCEEEEEEEEeECCCCCHHHHHHHHHHHHH
Confidence 9998765321110 00 001111234689999999997 88999999999999999999999999999987665
|
|
| >PRK05111 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=339.31 Aligned_cols=282 Identities=23% Similarity=0.304 Sum_probs=228.4
Q ss_pred hhHHHHHHHhhhcccCCCCC-----cChhHHHHHHHHHHHHCCCceEEEeec--CCCceEEEEecCCCCCCCcEEEEeec
Q 018435 27 DDSIIERFRAYLQIDTSQPN-----PDYTNASKFILAQAEALSLESQTLEFA--KNKPLILLKWPGSNPQLPSILLNSHT 99 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~-----~~e~~~~~~l~~~l~~~g~~~~~~~~~--~~~~nv~~~~~g~~~~~~~il~~aH~ 99 (356)
.++++++|++|++|||+|+. .++.++++||.++|+++|++++.+... .+++|+++.+ |.+ .++|+|+|||
T Consensus 4 ~~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~-g~~--~~~il~~~H~ 80 (383)
T PRK05111 4 LPSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASL-GSG--EGGLLLAGHT 80 (383)
T ss_pred chHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEe-CCC--CCeEEEEeee
Confidence 35799999999999998642 124689999999999999998866542 2567999999 543 2579999999
Q ss_pred ccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcc
Q 018435 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 100 Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
||||+++++|+.+||++.+ ++|++||||++|||++++++|.|++.|++.+ ++++|.|+|+++||+|+ .|+++++++
T Consensus 81 Dvvp~~~~~W~~~Pf~~~~-~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~g~-~G~~~~~~~ 156 (383)
T PRK05111 81 DTVPFDEGRWTRDPFTLTE-HDGKLYGLGTADMKGFFAFILEALRDIDLTK--LKKPLYILATADEETSM-AGARAFAEA 156 (383)
T ss_pred ceecCCCCcCcCCCCccEE-ECCEEEecccccccHHHHHHHHHHHHHhhcC--CCCCeEEEEEeccccCc-ccHHHHHhc
Confidence 9999977789999999988 8999999999999999999999999998754 46899999999999986 699999987
Q ss_pred ccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhc
Q 018435 180 HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAG 258 (356)
Q Consensus 180 ~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~ 258 (356)
+.++ .+.+++. +|+. ..++.+++|..+++|+++|+++|++.|+.+ ||+..+++++..+..+..........+
T Consensus 157 ~~~~-~d~~i~~-----ep~~-~~~~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~ 229 (383)
T PRK05111 157 TAIR-PDCAIIG-----EPTS-LKPVRAHKGHMSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLRDELQERYHNP 229 (383)
T ss_pred CCCC-CCEEEEc-----CCCC-CceeecccceEEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 5444 4555543 3553 356789999999999999999999999999 999999999999877643210000000
Q ss_pred ccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 259 ~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
... ...++++++.++||. ..|+||++|++.+|+|+.|.++.+++.++|++.+.. ...++++++.
T Consensus 230 ~~~-~~~~t~~i~~i~gg~------~~NvVP~~~~~~~diR~~p~~~~~~v~~~i~~~i~~~~~~~~~~~~~~ 295 (383)
T PRK05111 230 AFT-VPYPTLNLGHIHGGD------APNRICGCCELHFDIRPLPGMTLEDLRGLLREALAPVSERWPGRITVA 295 (383)
T ss_pred cCC-CCCCceeEeeeecCC------cCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 000 134789999999997 899999999999999999999999999999877762 2345566654
|
|
| >PRK06446 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=344.16 Aligned_cols=293 Identities=19% Similarity=0.239 Sum_probs=228.0
Q ss_pred hHHHHHHHhhhcccCCCCCc-ChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC
Q 018435 28 DSIIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~-~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~ 106 (356)
++++++|++|++|||+++.+ ++.++++||.++|+++|++++.++. .+++|+++.+++ + .+|+|+|+||+||||+++
T Consensus 2 ~~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~-~~~~~lia~~~~-~-~~~~vll~gH~DvVp~~~ 78 (436)
T PRK06446 2 DEELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERT-KGHPVVYGEINV-G-AKKTLLIYNHYDVQPVDP 78 (436)
T ss_pred hhHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEec-CCCCEEEEEecC-C-CCCEEEEEecccCCCCCc
Confidence 67899999999999986432 2379999999999999999887654 367899999853 2 358999999999999976
Q ss_pred -CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc-ccC
Q 018435 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV-FNS 184 (356)
Q Consensus 107 -~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~-~~~ 184 (356)
++|+++||++.+ +||+|||||++|||++++++|.|++.|++.+ .++.+|.|+|+++||.|+ .|+++++++.. ..+
T Consensus 79 ~~~W~~~Pf~~~~-~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~g~-~g~~~~l~~~~~~~~ 155 (436)
T PRK06446 79 LSEWKRDPFSATI-ENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEIGS-PNLEDFIEKNKNKLK 155 (436)
T ss_pred cccccCCCCceEE-ECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEEEEEEcccccCC-HhHHHHHHHHHHHhC
Confidence 789999999999 9999999999999999999999999998765 567899999999999997 58888887521 223
Q ss_pred CceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEe--cCCccCCCCCC-CHHHHHHHHHHHHHcchh------------
Q 018435 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARG--APGHGAKLYDN-SAMENLFKSIESVRRFRA------------ 249 (356)
Q Consensus 185 ~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G--~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~------------ 249 (356)
.++++ ++.....+.+...++++++|..+++++++| +++|++.|+.+ ||+..+++++..|.+...
T Consensus 156 ~d~vi-~E~~~~~~~~~~~i~~~~kG~~~~~l~v~G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 234 (436)
T PRK06446 156 ADSVI-MEGAGLDPKGRPQIVLGVKGLLYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVR 234 (436)
T ss_pred CCEEE-ECCCCccCCCCeEEEEecCeEEEEEEEEEeCCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCCC
Confidence 45544 443332233445799999999999999999 99999999888 999999999999975420
Q ss_pred ----hhHHHHH----------hcc--------------cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecC
Q 018435 250 ----SQFDLVK----------AGL--------------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVP 301 (356)
Q Consensus 250 ----~~~~~~~----------~~~--------------~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~ 301 (356)
.....+. ... ......+++|++.+++|.. ++.+.|+||++|++++|+|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~t~nv~~i~~g~~--~~~~~nvvP~~a~~~~d~R~~ 312 (436)
T PRK06446 235 ELTEEERELLKKYDIDVEELRKALGFKELKYSDREKIAEALLTEPTCNIDGFYSGYT--GKGSKTIVPSRAFAKLDFRLV 312 (436)
T ss_pred CCCHHHHHHHHhCCCCHHHHHHHhCCccccCCCcccHHHHHHhCCcEEEeeeecccc--CCCCCcEecCceEEEEEEEcC
Confidence 0000000 000 0011247889988988741 112679999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEEEE
Q 018435 302 PTTDAESLERRIVEEWAPASRNMTFEVV 329 (356)
Q Consensus 302 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (356)
|.++.+++.++|++.+.....++++++.
T Consensus 313 p~~~~~~v~~~l~~~~~~~~~~~~~~~~ 340 (436)
T PRK06446 313 PNQDPYKIFELLKKHLQKVGFNGEIIVH 340 (436)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEc
Confidence 9999999999999887632234455443
|
|
| >PRK07906 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=343.94 Aligned_cols=290 Identities=29% Similarity=0.492 Sum_probs=228.2
Q ss_pred HHHHHhhhcccCCCCC----cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC
Q 018435 31 IERFRAYLQIDTSQPN----PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~----~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~ 106 (356)
+++|++|++|||+++. ++|.++++||.++|+++|++++.++..++.+|+++.++|++++.|+|+|++|+||||+++
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~ 81 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAEA 81 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCCc
Confidence 6889999999998732 578999999999999999999876655678999999987655558999999999999977
Q ss_pred CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccc--cccC
Q 018435 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VFNS 184 (356)
Q Consensus 107 ~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~~~~ 184 (356)
++|+.+||++.+ +||++||||++|||++++++|+|++.|++.+..++++|.|+|+++||+|+..|++++++.. .+..
T Consensus 82 ~~W~~~Pf~~~~-~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~~~~~~~ 160 (426)
T PRK07906 82 ADWSVHPFSGEI-RDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPELFEG 160 (426)
T ss_pred ccCccCCCCcee-eCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEecCcccchhhhHHHHHHHHHHhccc
Confidence 789999999998 8999999999999999999999999999998888999999999999998756999988753 1222
Q ss_pred CceEEEEecCcc-----CcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHHHHHcchhhh--------
Q 018435 185 LNVGIVLDEGLA-----STTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQ-------- 251 (356)
Q Consensus 185 ~~~~~~~~~g~~-----~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~~i~~~~~~~-------- 251 (356)
.+ .++.+.+.. .+.....++++++|..+++|+++|+++|++.|+..||+..+++++..+.++....
T Consensus 161 ~~-~ii~e~~~~~~~~~~~~~~~~i~~~~kG~~~~~v~v~G~~~Hss~p~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~ 239 (426)
T PRK07906 161 VT-EAISEVGGFSLTVPGRDRLYLIETAEKGLAWMRLTARGRAGHGSMVNDDNAVTRLAEAVARIGRHRWPLVLTPTVRA 239 (426)
T ss_pred hh-eEEECCCceeeccCCCccEEEEEeccceEEEEEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccCHHHHH
Confidence 22 233332211 1112246899999999999999999999999875699999999999987643110
Q ss_pred -HHHHHh--c--c------------------cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHH
Q 018435 252 -FDLVKA--G--L------------------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAES 308 (356)
Q Consensus 252 -~~~~~~--~--~------------------~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~ 308 (356)
+..+.. . + ......++++++.++||. +.|+||++|++.+|+|++|.+. ++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~i~gG~------~~NviP~~~~~~~d~R~~p~~~-~~ 312 (426)
T PRK07906 240 FLDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKAGY------KVNVIPGTAEAVVDGRFLPGRE-EE 312 (426)
T ss_pred HHHHhhhhcCcccCcccHHHHHHHHhhcCcchhhhhcccccceeEeccC------ccccCCCceEEEEEEeECCCCc-HH
Confidence 000000 0 0 000013689999999998 8999999999999999999886 77
Q ss_pred HHHHHHHHhccCCCCceEEEEeec
Q 018435 309 LERRIVEEWAPASRNMTFEVVINS 332 (356)
Q Consensus 309 ~~~~i~~~~~~~~~~~~~~~~~~~ 332 (356)
+.++|++.+. ..+++++....
T Consensus 313 i~~~i~~~~~---~~v~~~~~~~~ 333 (426)
T PRK07906 313 FLATVDELLG---PDVEREWVHRD 333 (426)
T ss_pred HHHHHHHHhC---CCeEEEEecCC
Confidence 8888876553 24556554433
|
|
| >PRK08201 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=346.42 Aligned_cols=301 Identities=21% Similarity=0.305 Sum_probs=232.0
Q ss_pred CCCChhHHHHHHHhhhcccCCCCC----cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEee
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPN----PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSH 98 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~----~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH 98 (356)
+.+..++++++|++|++|||+++. .++.++++||.++|+++|++...+....+++||++.+.|. +.+|+|+|+||
T Consensus 9 ~~~~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~~~~-~~~~~lll~gH 87 (456)
T PRK08201 9 LRERREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADWLHA-PGKPTVLIYGH 87 (456)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCEEEEEecCC-CCCCEEEEEec
Confidence 455678999999999999998642 3567899999999999999743333334678999988664 34589999999
Q ss_pred cccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHh
Q 018435 99 TDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (356)
Q Consensus 99 ~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (356)
+||||+++ .+|+++||++++ ++|++||||++|||++++++|+|++.|++.+..++++|.|+++++||.|+ .|+.+++
T Consensus 88 ~DvVp~~~~~~W~~dPf~~~~-~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~g~~~~l 165 (456)
T PRK08201 88 YDVQPVDPLNLWETPPFEPTI-RDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEIGS-PNLDSFV 165 (456)
T ss_pred cCCcCCCchhcccCCCCceEe-ECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCC-ccHHHHH
Confidence 99999976 679999999999 99999999999999999999999999987666778899999999999997 5888888
Q ss_pred cccc-ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCC--ccCCCC-CC-CHHHHHHHHHHHHHcchhh--
Q 018435 178 DSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPG--HGAKLY-DN-SAMENLFKSIESVRRFRAS-- 250 (356)
Q Consensus 178 ~~~~-~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~--Hs~~p~-~g-nai~~~~~~~~~i~~~~~~-- 250 (356)
++.. .-..+.+++.+.+...++ ...++++++|..+++|+++|+++ ||+.|. .+ ||+..+++++..|.++...
T Consensus 166 ~~~~~~~~~d~~ii~e~~~~~~~-~~~i~~g~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~~~~~~~~ 244 (456)
T PRK08201 166 EEEKDKLAADVVLISDTTLLGPG-KPAICYGLRGLAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLASLHDEHGTVA 244 (456)
T ss_pred HhhHHhccCCEEEEeCCCcCCCC-CEEEEEecCCeEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHHhcCCCCCCEe
Confidence 7531 112466777664432222 24699999999999999999998 998765 45 9999999999998753210
Q ss_pred --------------hHHH----------HHh-----ccc---------ccCCceeeeEeeeecCCCCCCCccccccCCeE
Q 018435 251 --------------QFDL----------VKA-----GLK---------AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEA 292 (356)
Q Consensus 251 --------------~~~~----------~~~-----~~~---------~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~ 292 (356)
.... ++. ... .....+|++++.++||.. ++...|+||++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~--~~~~~NvVP~~a 322 (456)
T PRK08201 245 VEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGYTALERTWARPTLELNGVYGGFQ--GEGTKTVIPAEA 322 (456)
T ss_pred cCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcchHHHHHHHhCCcEEEEeeecCCC--CCCCceEECcce
Confidence 0000 000 000 001135888988988762 223579999999
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEE
Q 018435 293 EAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVV 329 (356)
Q Consensus 293 ~~~~diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~ 329 (356)
++.+|+|+.|.++.+++.++|++.+.. ...++++++.
T Consensus 323 ~~~~diR~~p~~~~e~v~~~i~~~l~~~~~~~~~v~~~ 360 (456)
T PRK08201 323 HAKITCRLVPDQDPQEILDLIEAHLQAHTPAGVRVTIR 360 (456)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 999999999999999999999988762 1344555554
|
|
| >PRK08596 acetylornithine deacetylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=342.82 Aligned_cols=277 Identities=20% Similarity=0.303 Sum_probs=229.9
Q ss_pred CCCChhHHHHHHHhhhcccCCCCC-cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCC-CCcEEEEeecc
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQ-LPSILLNSHTD 100 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~-~~~il~~aH~D 100 (356)
+....++++++|++|++|||+++. .+|.++++||.++|+++|++++.++..++.+|+++.++|+++. .|+|+|+||+|
T Consensus 8 i~~~~~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~lll~~H~D 87 (421)
T PRK08596 8 IELRKDELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLIINGHMD 87 (421)
T ss_pred HHhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcEEEEecccc
Confidence 445568899999999999998754 3688999999999999999988776656789999999876442 36799999999
Q ss_pred cCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcc
Q 018435 101 VVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 101 tvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
|||+++ ++|+.+||.+++ ++|++||||++|||++++++|+|+++|++.+..++++|.|+|+++||+|+ .|+++++++
T Consensus 88 tVp~~~~~~W~~~Pf~~~~-~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~-~G~~~~~~~ 165 (421)
T PRK08596 88 VAEVSADEAWETNPFEPTI-KDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVGE-AGTLQCCER 165 (421)
T ss_pred ccCCCCccccccCCCCcEE-ECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCC-cCHHHHHhc
Confidence 999976 579999999999 99999999999999999999999999999988888999999999999986 699999987
Q ss_pred ccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEec----------CCccCCCCCC-CHHHHHHHHHHHHHcch
Q 018435 180 HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGA----------PGHGAKLYDN-SAMENLFKSIESVRRFR 248 (356)
Q Consensus 180 ~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~----------~~Hs~~p~~g-nai~~~~~~~~~i~~~~ 248 (356)
+. ..+++++.+ |+. ....+++|...+.++++|. ++|++.|+.| ||+..+++++..+.++.
T Consensus 166 ~~--~~d~~i~~e-----p~~--~~~~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~i~~l~~~~ 236 (421)
T PRK08596 166 GY--DADFAVVVD-----TSD--LHMQGQGGVITGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKIIQSLQELE 236 (421)
T ss_pred CC--CCCEEEECC-----CCC--CccccccceeeEEEEEEeecccccccccccccccCCccCcCHHHHHHHHHHHHHHHH
Confidence 53 357777775 332 2247888988777777775 4799999888 99999999999998764
Q ss_pred hhhHHHHHhcccc-cCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 249 ASQFDLVKAGLKA-EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 249 ~~~~~~~~~~~~~-~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
.. +..... ... .....+++++.++||. ..|+||++|++.+|+|+.|.++.+++.++|++.+.
T Consensus 237 ~~-~~~~~~-~~~~~~~~~t~~v~~i~gG~------~~nvvP~~~~~~~d~R~~p~~~~~~v~~~i~~~~~ 299 (421)
T PRK08596 237 RH-WAVMKS-YPGFPPGTNTINPAVIEGGR------HAAFIADECRLWITVHFYPNETYEQVIKEIEEYIG 299 (421)
T ss_pred HH-Hhhccc-CccCCCCCcceeeeeeeCCC------CCCccCceEEEEEEeeeCCCCCHHHHHHHHHHHHH
Confidence 32 111010 001 1134689999999998 99999999999999999999999999999997765
|
|
| >PRK07522 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=336.90 Aligned_cols=281 Identities=22% Similarity=0.260 Sum_probs=228.0
Q ss_pred hHHHHHHHhhhcccCCCCCcCh-hHHHHHHHHHHHHCCCceEEEeec-CCCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 28 DSIIERFRAYLQIDTSQPNPDY-TNASKFILAQAEALSLESQTLEFA-KNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e-~~~~~~l~~~l~~~g~~~~~~~~~-~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
.+++++|++|++|||.| +++ .++++|+.++|+++|++++.++.. ++.+|+++.+++. ..|+|+|+||+||||++
T Consensus 4 ~~~~~~l~~lv~i~S~s--~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~--~~~~ill~~H~Dtv~~~ 79 (385)
T PRK07522 4 MSSLDILERLVAFDTVS--RDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPA--DRGGIVLSGHTDVVPVD 79 (385)
T ss_pred hhHHHHHHHHhCCCCcC--CCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCC--CCCeEEEEeecccccCC
Confidence 67999999999999985 454 599999999999999998765543 3568999999544 24899999999999998
Q ss_pred CCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccc--c
Q 018435 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF--N 183 (356)
Q Consensus 106 ~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~--~ 183 (356)
+.+|+.+||++.+ +||++||||++|||++++++|.|++.|++.+ ++++|.|+|+++||.|+ .|++++++.... .
T Consensus 80 ~~~W~~~pf~~~~-~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~i~~~~~~dEE~g~-~G~~~l~~~~~~~~~ 155 (385)
T PRK07522 80 GQAWTSDPFRLTE-RDGRLYGRGTCDMKGFIAAALAAVPELAAAP--LRRPLHLAFSYDEEVGC-LGVPSMIARLPERGV 155 (385)
T ss_pred CCCCCCCCCceEE-ECCEEEeccccccchHHHHHHHHHHHHHhCC--CCCCEEEEEEeccccCC-ccHHHHHHHhhhcCC
Confidence 7899999999988 8999999999999999999999999998874 57899999999999886 699999875321 1
Q ss_pred CCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcc-cc
Q 018435 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL-KA 261 (356)
Q Consensus 184 ~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~-~~ 261 (356)
..+.+++. +|++ ..++++++|..+++|+++|+++|++.|+.+ ||+..+++++..++++....... ... ..
T Consensus 156 ~~d~~i~~-----ep~~-~~~~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~--~~~~~~ 227 (385)
T PRK07522 156 KPAGCIVG-----EPTS-MRPVVGHKGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADRLAAP--GPFDAL 227 (385)
T ss_pred CCCEEEEc-----cCCC-CeeeeeecceEEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHHHHHhhc--CCCCcC
Confidence 24555543 3543 478999999999999999999999999888 99999999999998764321100 000 00
Q ss_pred c-CCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--------CCCCceEEEEe
Q 018435 262 E-GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--------ASRNMTFEVVI 330 (356)
Q Consensus 262 ~-~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~ 330 (356)
. ...++++++.++||. ..|+||++|++.+|+|+.+.++.+++.++|++.+.. ...++++++..
T Consensus 228 ~~~~~~t~~i~~i~gG~------~~nviP~~a~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~v~~~~ 299 (385)
T PRK07522 228 FDPPYSTLQTGTIQGGT------ALNIVPAECEFDFEFRNLPGDDPEAILARIRAYAEAELLPEMRAVHPEAAIEFEP 299 (385)
T ss_pred CCCCcceeEEeeeecCc------cccccCCceEEEEEEccCCCCCHHHHHHHHHHHHHhhcchhhhhhcCCCcEEEEe
Confidence 0 113688999999987 899999999999999999999999999999987752 23456666544
|
|
| >TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=332.72 Aligned_cols=276 Identities=21% Similarity=0.281 Sum_probs=225.0
Q ss_pred HHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecC--CCceEEEEecCCCCCCCcEEEEeecccCCCCCCCC
Q 018435 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK--NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKW 109 (356)
Q Consensus 32 ~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~--~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w 109 (356)
++|++|++|||+++ .++.++++||.++|+++|++++.++..+ +++|+++.+.++ +.|+|+|+||+||||++++.|
T Consensus 1 ~~l~~lv~i~S~s~-~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~--~~~~i~l~~H~Dtvp~~~~~w 77 (364)
T TIGR01892 1 EILTKLVAFDSTSF-RPNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPS--GAGGLALSGHTDVVPYDDAAW 77 (364)
T ss_pred ChHHHhhCcCCcCC-ccHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCC--CCCeEEEEcccccccCCCCcC
Confidence 46899999999853 2347999999999999999988765433 368999999553 347999999999999987899
Q ss_pred CCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEE
Q 018435 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGI 189 (356)
Q Consensus 110 ~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~ 189 (356)
+++||++.+ ++|++||||++|||++++++|++++.|++.. ++++|.|+|+++||+|+ .|++++++++.+ ..+.++
T Consensus 78 ~~~Pf~~~~-~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~g~-~G~~~~~~~~~~-~~d~~i 152 (364)
T TIGR01892 78 TRDPFRLTE-KDGRLYGRGTCDMKGFLACALAAAPDLAAEQ--LKKPLHLALTADEEVGC-TGAPKMIEAGAG-RPRHAI 152 (364)
T ss_pred CCCCCccee-eCCEEEecCccccchHHHHHHHHHHHHHhcC--cCCCEEEEEEeccccCC-cCHHHHHHhcCC-CCCEEE
Confidence 999999988 8999999999999999999999999998764 57899999999999986 699999987643 345555
Q ss_pred EEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhccc-cc-CCce
Q 018435 190 VLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK-AE-GEVV 266 (356)
Q Consensus 190 ~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~ 266 (356)
+. +|++ ..++.+++|..+++|+++|+++|++.|+.+ ||+..+++++..+.++..... ...+. .. ...+
T Consensus 153 ~~-----ep~~-~~~~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~---~~~~~~~~~~~~~ 223 (364)
T TIGR01892 153 IG-----EPTR-LIPVRAHKGYASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLADTLL---REDLDEGFTPPYT 223 (364)
T ss_pred EC-----CCCC-ceeEEeeceEEEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHHHHhc---cCCCCccCCCCCc
Confidence 43 3553 356778999999999999999999999998 999999999999987643110 00000 01 1247
Q ss_pred eeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc---CCCCceEEEEe
Q 018435 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP---ASRNMTFEVVI 330 (356)
Q Consensus 267 ~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~ 330 (356)
+++++.++||. +.|+||++|++.+|+|++|.++.+++.++|++.+.. ...++++++..
T Consensus 224 ~~~i~~i~gg~------~~nviP~~~~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~v~~~~ 284 (364)
T TIGR01892 224 TLNIGVIQGGK------AVNIIPGACEFVFEWRPIPGMDPEELLQLLETIAQALVRDEPGFEVQIEV 284 (364)
T ss_pred eEEEeeeecCC------CCcccCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhhCCCceEEEEE
Confidence 99999999987 999999999999999999999999999999977752 23456666543
|
This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes. |
| >PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=332.29 Aligned_cols=279 Identities=20% Similarity=0.270 Sum_probs=225.4
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC-C
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP-S 107 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~-~ 107 (356)
+++++|++|++|||. ++++.+++++|.++|+++|++++.++. ++.+|+++.+ |. .+|+|+|+||+||||+++ +
T Consensus 3 ~~~~~l~~Lv~ips~--s~~e~~~~~~l~~~l~~~G~~~~~~~~-~~~~n~~~~~-g~--~~~~i~l~~H~D~Vp~g~~~ 76 (375)
T PRK13009 3 DVLELAQDLIRRPSV--TPDDAGCQDLLAERLEALGFTCERMDF-GDVKNLWARR-GT--EGPHLCFAGHTDVVPPGDLE 76 (375)
T ss_pred hHHHHHHHHhCCCCC--CCchhhHHHHHHHHHHHcCCeEEEecc-CCCcEEEEEe-cC--CCCEEEEEeecccCCCCCcc
Confidence 578999999999997 457899999999999999999876543 4578999988 54 248999999999999975 6
Q ss_pred CCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc--ccCC
Q 018435 108 KWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV--FNSL 185 (356)
Q Consensus 108 ~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~--~~~~ 185 (356)
+|+++||++++ +||++||||++|||++++++|.|++.|++.+..++++|+|+|+++||.++..|++.+++... ....
T Consensus 77 ~w~~~Pf~~~~-~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~ 155 (375)
T PRK13009 77 AWTSPPFEPTI-RDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVKVLEWLKARGEKI 155 (375)
T ss_pred cCCCCCCCcEE-ECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHHHHHHHHHcCcCC
Confidence 89999999998 99999999999999999999999999998887788999999999999865458988876421 1235
Q ss_pred ceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCC
Q 018435 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGE 264 (356)
Q Consensus 186 ~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 264 (356)
+++++.+.....+. ...++.+++|..+++|+++|+++|++.|+.+ ||+..+++++..+..+..... . ..-.
T Consensus 156 d~~i~~ep~~~~~~-~~~i~~g~~g~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~----~---~~~~ 227 (375)
T PRK13009 156 DYCIVGEPTSTERL-GDVIKNGRRGSLTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDEG----N---EFFP 227 (375)
T ss_pred CEEEEcCCCcccCC-CCeEEEecceEEEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhccCC----C---ccCC
Confidence 66665542211111 1257889999999999999999999999988 999999999999876432100 0 0112
Q ss_pred ceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEE
Q 018435 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVV 329 (356)
Q Consensus 265 ~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (356)
..+++++.+++|.. ..|+||++|++.+|+|++|.++.+++.++|++.+.. .++++++.
T Consensus 228 ~~~~~i~~i~~G~~-----~~nvip~~~~~~~diR~~~~~~~e~i~~~i~~~~~~--~~~~~~~~ 285 (375)
T PRK13009 228 PTSLQITNIDAGTG-----ATNVIPGELEAQFNFRFSTEHTAESLKARVEAILDK--HGLDYTLE 285 (375)
T ss_pred CceEEEEEEecCCC-----CCcccCCcEEEEEEEecCCCCCHHHHHHHHHHHHHh--cCCCeEEE
Confidence 35788999998742 679999999999999999999999999999987763 23444443
|
|
| >PRK06133 glutamate carboxypeptidase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=336.75 Aligned_cols=277 Identities=17% Similarity=0.258 Sum_probs=229.7
Q ss_pred CCChhHHHHHHHhhhcccCCCCC-cChhHHHHHHHHHHHHCCCceEEEeecC-CCceEEEEecCCCCCCCcEEEEeeccc
Q 018435 24 AKSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAK-NKPLILLKWPGSNPQLPSILLNSHTDV 101 (356)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~g~~~~~~~~~~-~~~nv~~~~~g~~~~~~~il~~aH~Dt 101 (356)
+...++++++|++|++|||.++. .++.++++||.++|+++|++++.++..+ ..+|+++.++|++ .|+|+|+||+||
T Consensus 33 ~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~~--~~~ill~~H~D~ 110 (410)
T PRK06133 33 QQEQPAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGTG--KRRIMLIAHMDT 110 (410)
T ss_pred HHhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCCC--CceEEEEeecCc
Confidence 34667999999999999998643 2346899999999999999987655432 4579999997753 489999999999
Q ss_pred CCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc
Q 018435 102 VPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (356)
Q Consensus 102 vp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (356)
||++ ..|+.+||. + ++|++||||++|||++++++|.+++.|++.+..++++|.|+|+++||.|+ .|+++++++..
T Consensus 111 Vp~~-~~w~~~Pf~--~-~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~G~~~~~~~~~ 185 (410)
T PRK06133 111 VYLP-GMLAKQPFR--I-DGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGS-PGSRELIAELA 185 (410)
T ss_pred cCCC-CccCCCCEE--E-ECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCC-ccHHHHHHHHh
Confidence 9986 469999997 5 89999999999999999999999999999887778999999999999986 69999997633
Q ss_pred ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccC-CCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcc
Q 018435 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (356)
Q Consensus 182 ~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~-~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~ 259 (356)
.+.+.+++.+.+. +. ..++++++|..+++++++|+++||+ .|+.+ ||+..+++++..+.++...
T Consensus 186 -~~~d~~i~~ep~~--~~--~~v~~~~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~~~--------- 251 (410)
T PRK06133 186 -AQHDVVFSCEPGR--AK--DALTLATSGIATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLGDP--------- 251 (410)
T ss_pred -ccCCEEEEeCCCC--CC--CCEEEeccceEEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhccCC---------
Confidence 3457777765321 11 2678899999999999999999985 78888 9999999999888765321
Q ss_pred cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEEe
Q 018435 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVVI 330 (356)
Q Consensus 260 ~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~ 330 (356)
....+++++.++||. +.|+||++|++.+|+|+.|.++.+++.++|++.+.. ...++++++..
T Consensus 252 ---~~~~t~~~~~i~gG~------~~nvIP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~ 314 (410)
T PRK06133 252 ---AKGTTLNWTVAKAGT------NRNVIPASASAQADVRYLDPAEFDRLEADLQEKVKNKLVPDTEVTLRF 314 (410)
T ss_pred ---CCCeEEEeeEEECCC------CCceeCCccEEEEEEEECCHHHHHHHHHHHHHHHhccCCCCeEEEEEe
Confidence 123688999999998 999999999999999999999999999999988763 23566666643
|
|
| >TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=329.14 Aligned_cols=277 Identities=20% Similarity=0.289 Sum_probs=222.5
Q ss_pred HHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC-CCC
Q 018435 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP-SKW 109 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~-~~w 109 (356)
+++|++|++|||+ +++|.++++||.++|+++||+++.++. ++.+|+++.+ |. ..|+|+|++|+||||+++ ++|
T Consensus 2 ~~~l~~lv~ips~--s~~e~~~~~~i~~~l~~~G~~~~~~~~-~~~~~~~~~~-g~--~~~~i~~~~H~DtVp~~~~~~W 75 (370)
T TIGR01246 2 TELAKELISRPSV--TPNDAGCQDIIAERLEKLGFEIEWMHF-GDTKNLWATR-GT--GEPVLAFAGHTDVVPAGPEEQW 75 (370)
T ss_pred hHHHHHHhcCCCC--CcchHHHHHHHHHHHHHCCCEEEEEec-CCCceEEEEe-cC--CCcEEEEEccccccCCCCcccc
Confidence 6889999999997 467899999999999999999886544 3568999986 44 348999999999999976 789
Q ss_pred CCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc--ccCCce
Q 018435 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV--FNSLNV 187 (356)
Q Consensus 110 ~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~--~~~~~~ 187 (356)
+++||++.+ ++|++||||++|||+++++++.|++.+++.+..++++|+|+|+++||.++..|++.+++... ....|+
T Consensus 76 ~~~p~~~~~-~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~~~~~d~ 154 (370)
T TIGR01246 76 SSPPFEPVE-RDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDY 154 (370)
T ss_pred ccCCCCcEE-ECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHHHHHHhcCCCCCE
Confidence 999999988 89999999999999999999999999988877788999999999999875458888875311 113566
Q ss_pred EEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCce
Q 018435 188 GIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266 (356)
Q Consensus 188 ~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 266 (356)
+++.+.+...+. ...++++++|..+++++++|+++|++.|+.+ ||+..++.++..+..+... .. ...-...
T Consensus 155 ~i~~ep~~~~~~-~~~i~~~~~G~~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~------~~-~~~~~~~ 226 (370)
T TIGR01246 155 CIVGEPSSVKKL-GDVIKNGRRGSITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWD------EG-NEFFPPT 226 (370)
T ss_pred EEEcCCCCcccC-CceEEEeeeEEEEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhhhc------cC-CccCCCC
Confidence 665543211111 1248889999999999999999999999988 9999999999888754221 00 0011246
Q ss_pred eeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEE
Q 018435 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVV 329 (356)
Q Consensus 267 ~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (356)
+++++.+++|.. ..|+||++|++++|+|++|.++.+++.++|++.+.. .++++++.
T Consensus 227 t~~i~~i~~g~~-----~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~--~~~~~~v~ 282 (370)
T TIGR01246 227 SLQITNIHAGTG-----ANNVIPGELYVQFNLRFSTEVSDEILKQRVEAILDQ--HGLDYDLE 282 (370)
T ss_pred ceEeeeeecCCC-----CCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHH--cCCCEEEE
Confidence 899999998851 579999999999999999999999999999987753 23444443
|
This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason. |
| >PRK08262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=340.29 Aligned_cols=293 Identities=27% Similarity=0.388 Sum_probs=227.9
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcCh-------hHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEE
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDY-------TNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILL 95 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e-------~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~ 95 (356)
+..+.++++++|++|++|||+|+..+. .++++||.++++.+|+.++.+... ..|+++.++|++++.|+|+|
T Consensus 39 ~~~~~~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~--~~~vv~~~~g~~~~~~~ill 116 (486)
T PRK08262 39 VAVDEDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVG--GHSLLYTWKGSDPSLKPIVL 116 (486)
T ss_pred CcCCHHHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEEC--CccEEEEEECCCCCCCeEEE
Confidence 345689999999999999998653222 358999999999999987765543 25788888777654589999
Q ss_pred EeecccCCCCC---CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCcccc
Q 018435 96 NSHTDVVPSEP---SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDG 172 (356)
Q Consensus 96 ~aH~Dtvp~~~---~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G 172 (356)
+||+||||+++ ..|+++||++++ +||++||||++||||+++++|.|++.|++.+..++++|.|+|+++||+|+ .|
T Consensus 117 ~gH~DvVp~~~~~~~~W~~~Pf~~~~-~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~-~G 194 (486)
T PRK08262 117 MAHQDVVPVAPGTEGDWTHPPFSGVI-ADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGG-LG 194 (486)
T ss_pred ECcccccCCCCCCcccCccCCCceEe-eCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCC-cC
Confidence 99999999963 579999999999 99999999999999999999999999999887788999999999999987 59
Q ss_pred HHHHhccccccCCceEEEEecC----------ccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHH
Q 018435 173 AEKFADSHVFNSLNVGIVLDEG----------LASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIE 242 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~g----------~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~ 242 (356)
++++++.......+..++++.+ ...|+ ..+.++++|..+++|+++|+++||+.|+..||+..+++++.
T Consensus 195 ~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~p~--~~i~~~~kG~~~~~i~v~G~~~Hss~p~~~nai~~l~~~l~ 272 (486)
T PRK08262 195 ARAIAELLKERGVRLAFVLDEGGAITEGVLPGVKKPV--ALIGVAEKGYATLELTARATGGHSSMPPRQTAIGRLARALT 272 (486)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCceecccccCCCCceE--EeeEEeeeeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Confidence 9988864211112223333321 11232 25778899999999999999999999866899999999999
Q ss_pred HHHcchhh---------hHHHHHh---------------------------cccccCCceeeeEeeeecCCCCCCCcccc
Q 018435 243 SVRRFRAS---------QFDLVKA---------------------------GLKAEGEVVSVNMAFLKAGTPSPNGFVMN 286 (356)
Q Consensus 243 ~i~~~~~~---------~~~~~~~---------------------------~~~~~~~~~~v~~~~i~~g~~~~~~~~~n 286 (356)
.+.+++.. .++.+.. ........++++++.++||. ..|
T Consensus 273 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~I~gG~------~~N 346 (486)
T PRK08262 273 RLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAMLRTTTAPTMLKGSP------KDN 346 (486)
T ss_pred HHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhcCCccceeEEeeeeeeEEecCC------ccc
Confidence 98864210 1111100 00001124789999999987 899
Q ss_pred ccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEE
Q 018435 287 LQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVV 329 (356)
Q Consensus 287 vip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (356)
+||++|++++|+|++|.++.+++.++|++.+. .. ++++++.
T Consensus 347 vIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~-~~-~~~v~~~ 387 (486)
T PRK08262 347 VLPQRATATVNFRILPGDSVESVLAHVRRAVA-DD-RVEIEVL 387 (486)
T ss_pred cCCCccEEEEEEEeCCCCCHHHHHHHHHHHhc-cC-ceEEEEe
Confidence 99999999999999999999999999998776 22 5566554
|
|
| >PRK07907 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=336.68 Aligned_cols=296 Identities=19% Similarity=0.256 Sum_probs=229.5
Q ss_pred CCCChhHHHHHHHhhhcccCCCCC----cChhHHHHHHHHHHHHCCC-ceEEEeecCCCceEEEEecCCCCCCCcEEEEe
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPN----PDYTNASKFILAQAEALSL-ESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~----~~e~~~~~~l~~~l~~~g~-~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
++...++++++|++|++|||+++. .++.+++++|.++|+++|+ +++.++ .++.+|+++.++++. ..|+|+|+|
T Consensus 13 i~~~~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~nl~a~~~~~~-~~~~lll~g 90 (449)
T PRK07907 13 VAELLPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVS-ADGAPAVIGTRPAPP-GAPTVLLYA 90 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEe-cCCCCEEEEEecCCC-CCCEEEEEc
Confidence 556778999999999999998743 2467999999999999998 677655 457899999997653 358999999
Q ss_pred ecccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHH
Q 018435 98 HTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (356)
Q Consensus 98 H~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (356)
|+||||+++ .+|+++||++++ +||+|||||++|||++++++|+|+++| +..++++|.|+++++||+|+ .|++++
T Consensus 91 H~DvVp~~~~~~W~~~Pf~~~~-~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~~~i~~~~~~dEE~g~-~g~~~~ 165 (449)
T PRK07907 91 HHDVQPPGDPDAWDSPPFELTE-RDGRLYGRGAADDKGGIAMHLAALRAL---GGDLPVGVTVFVEGEEEMGS-PSLERL 165 (449)
T ss_pred ccCCCCCCCccccCCCCceeEE-ECCEEEECCccCCcHHHHHHHHHHHHh---ccCCCCcEEEEEEcCcccCC-ccHHHH
Confidence 999999975 689999999999 999999999999999999999999998 33567899999999999997 699999
Q ss_pred hcccc-ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEE--ecCCccCCC-CCC-CHHHHHHHHHHHHHcchhh-
Q 018435 177 ADSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKAR--GAPGHGAKL-YDN-SAMENLFKSIESVRRFRAS- 250 (356)
Q Consensus 177 ~~~~~-~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~--G~~~Hs~~p-~~g-nai~~~~~~~~~i~~~~~~- 250 (356)
+++.. ....|.+++.+.+... .+.+.+.++++|..+++++++ |+++||+.+ ..+ ||+..+++++.+|.+....
T Consensus 166 l~~~~~~~~~d~~iv~E~~~~~-~~~p~i~~~~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~~l~~~~~~~ 244 (449)
T PRK07907 166 LAEHPDLLAADVIVIADSGNWS-VGVPALTTSLRGNADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLATLHDEDGNV 244 (449)
T ss_pred HHhchHhhcCCEEEEecCCcCC-CCCeEEEEecCCcEEEEEEEEECCCCCCCccccccCCCHHHHHHHHHHhhCCCCCCE
Confidence 88631 1235777887654321 122468999999999999988 899999975 445 9999999999998754210
Q ss_pred ----------h----HH--HHHh--cc-------------cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEe
Q 018435 251 ----------Q----FD--LVKA--GL-------------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIR 299 (356)
Q Consensus 251 ----------~----~~--~~~~--~~-------------~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR 299 (356)
+ ++ ..+. .. ......++++++.++++. ++.+.|+||++|++++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~~~~---~g~~~nvIP~~a~~~~diR 321 (449)
T PRK07907 245 AVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITVIGIDAPP---VAGASNALPPSARARLSLR 321 (449)
T ss_pred eCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEEEeeecCC---CCCCCCEecCceEEEEEEE
Confidence 0 00 0000 00 000124688888888642 2338899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHhccC-CCCceEEEE
Q 018435 300 VPPTTDAESLERRIVEEWAPA-SRNMTFEVV 329 (356)
Q Consensus 300 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~ 329 (356)
+.|.++.+++.+.|++.+... ..+.++++.
T Consensus 322 ~~p~~~~e~v~~~l~~~l~~~~~~~~~~~~~ 352 (449)
T PRK07907 322 VAPGQDAAEAQDALVAHLEAHAPWGAHVTVE 352 (449)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 999999999999999877632 224455543
|
|
| >PRK09104 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=338.04 Aligned_cols=303 Identities=20% Similarity=0.244 Sum_probs=234.5
Q ss_pred cCCCCChhHHHHHHHhhhcccCCCCCc----ChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEE
Q 018435 21 SSPAKSDDSIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLN 96 (356)
Q Consensus 21 ~~~~~~~~~~~~~l~~l~~i~s~s~~~----~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~ 96 (356)
.++....++++++|++|++|||+|+.. ++.+++++|.++|+++|++++.++. .+.+||++.+.|+++..|+|+|+
T Consensus 10 ~~~~~~~~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~-~~~~~l~a~~~g~~~~~~~lll~ 88 (464)
T PRK09104 10 DHIDANLDASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDT-PGHPMVVAHHEGPTGDAPHVLFY 88 (464)
T ss_pred HHHHHhHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEec-CCCCEEEEEecCCCCCCCEEEEE
Confidence 344566899999999999999986432 2478899999999999999887654 36789999998765556899999
Q ss_pred eecccCCCCC-CCCCCCCCCeeeCCCC-----eEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCcc
Q 018435 97 SHTDVVPSEP-SKWSHHPFGAHLDSQG-----NIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170 (356)
Q Consensus 97 aH~Dtvp~~~-~~w~~~P~~~~~~~~g-----~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 170 (356)
||+||||+++ ++|+++||++++ +++ ++||||++|||++++++|+|++.|++.+..++++|.|+|+++||.|+
T Consensus 89 gH~DvVp~~~~~~W~~~Pf~~~~-~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~- 166 (464)
T PRK09104 89 GHYDVQPVDPLDLWESPPFEPRI-KETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVRVTILFEGEEESGS- 166 (464)
T ss_pred ecccCCCCCCcccCCCCCCcceE-ecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccCC-
Confidence 9999999976 679999999988 654 69999999999999999999999998776778899999999999997
Q ss_pred ccHHHHhccc-cccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEe--cCCccCC-CCCC-CHHHHHHHHHHHHH
Q 018435 171 DGAEKFADSH-VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARG--APGHGAK-LYDN-SAMENLFKSIESVR 245 (356)
Q Consensus 171 ~G~~~~~~~~-~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G--~~~Hs~~-p~~g-nai~~~~~~~~~i~ 245 (356)
.|+..++.+. .....+++++.+.+...+. ...++++++|..+++++++| +++||+. |..+ ||+..+++++..+.
T Consensus 167 ~g~~~~l~~~~~~~~~d~~iv~E~~~~~~~-~~~i~~~~kG~~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~~~l~~l~ 245 (464)
T PRK09104 167 PSLVPFLEANAEELKADVALVCDTGMWDRE-TPAITTSLRGLVGEEVTITAADRDLHSGLFGGAAANPIRVLTRILAGLH 245 (464)
T ss_pred ccHHHHHHhhHHhcCCCEEEEeCCCCCCCC-CeEEEeecCCeEEEEEEEEeCCCCccccccCCccCCHHHHHHHHHHhcc
Confidence 5888887652 1123577787775432222 34789999999999999999 6899996 4667 99999999999986
Q ss_pred cchhh-------------------hHHH-------H-Hh-ccc------------ccCCceeeeEeeeecCCCCCCCccc
Q 018435 246 RFRAS-------------------QFDL-------V-KA-GLK------------AEGEVVSVNMAFLKAGTPSPNGFVM 285 (356)
Q Consensus 246 ~~~~~-------------------~~~~-------~-~~-~~~------------~~~~~~~v~~~~i~~g~~~~~~~~~ 285 (356)
+.... .++. . .. ++. .....++++++.++||.. ++.+.
T Consensus 246 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~--~~~~~ 323 (464)
T PRK09104 246 DETGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGRSVLEQIWSRPTCEINGIWGGYT--GEGFK 323 (464)
T ss_pred CCCCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccHHHHHHHhhCCeEEEeccccCCC--CCCCc
Confidence 53110 0000 0 00 000 001236889999998862 11257
Q ss_pred cccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEE
Q 018435 286 NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVV 329 (356)
Q Consensus 286 nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~ 329 (356)
|+||++|++.+|+|++|.++.+++.++|++.+.. ...+.++++.
T Consensus 324 nvvP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~~~~~~~v~~~ 368 (464)
T PRK09104 324 TVIPAEASAKVSFRLVGGQDPAKIREAFRAYVRARLPADCSVEFH 368 (464)
T ss_pred cEecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 9999999999999999999999999999987762 1234555554
|
|
| >PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=329.08 Aligned_cols=283 Identities=23% Similarity=0.352 Sum_probs=227.0
Q ss_pred CChhHHHHHHHhhhcccCCCCC-cChhHHHHHHHHHHHHCCCceEEEeecCC--------CceEEEEecCCCCCCCcEEE
Q 018435 25 KSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAKN--------KPLILLKWPGSNPQLPSILL 95 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~g~~~~~~~~~~~--------~~nv~~~~~g~~~~~~~il~ 95 (356)
...++++++|++|++|||+|++ .++.++++||.++|+++|++++..+..++ .+|+++.. +.+ .|+|+|
T Consensus 3 ~~~~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ill 79 (394)
T PRK08651 3 AMMFDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARR-GSG--NPHLHF 79 (394)
T ss_pred hhHHHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEe-CCC--CceEEE
Confidence 4568999999999999999744 46789999999999999999887654432 25677765 433 389999
Q ss_pred EeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHH
Q 018435 96 NSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEK 175 (356)
Q Consensus 96 ~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 175 (356)
+|||||||+++..|+.+||++.+ ++|++||||++|||++++++|++++.|++.+ +++|+|+|+++||+|+ .|+++
T Consensus 80 ~~HlDtvp~~~~~~~~~Pf~~~~-~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~g~-~G~~~ 154 (394)
T PRK08651 80 NGHYDVVPPGEGWSVNVPFEPKV-KDGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIELAIVPDEETGG-TGTGY 154 (394)
T ss_pred EeeeeeecCCCCccccCCCCcEE-ECCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEEEEEecCccccc-hhHHH
Confidence 99999999975446999999998 8999999999999999999999999998775 6899999999999986 69999
Q ss_pred HhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHH
Q 018435 176 FADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDL 254 (356)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~ 254 (356)
+++++.++ .+.+++.+ |++...++++++|..+++|+++|+++|++.|+.+ ||+.++++++..|.++.......
T Consensus 155 ~~~~~~~~-~d~~i~~~-----~~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~ 228 (394)
T PRK08651 155 LVEEGKVT-PDYVIVGE-----PSGLDNICIGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSK 228 (394)
T ss_pred HHhccCCC-CCEEEEec-----CCCCCceEEecccEEEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHHhhhcc
Confidence 99876443 46666654 3322268899999999999999999999999888 99999999999997653211100
Q ss_pred HHhccc-ccCCceeeeEee--eecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 255 VKAGLK-AEGEVVSVNMAF--LKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 255 ~~~~~~-~~~~~~~v~~~~--i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
..+. ......+++++. ++||. +.|+||++|++.+|+|+.|.++.+++.++|++.+.. ...++++++.
T Consensus 229 --~~~~~~~~~~~~~~ig~~~i~gG~------~~nviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~~~~~~~i~ 300 (394)
T PRK08651 229 --YEYDDERGAKPTVTLGGPTVEGGT------KTNIVPGYCAFSIDRRLIPEETAEEVRDELEALLDEVAPELGIEVEFE 300 (394)
T ss_pred --ccccccccCCCceeecceeeeCCC------CCCccCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhccCCCeeEE
Confidence 0000 012235677777 88887 999999999999999999999999999999977762 3345555554
|
|
| >PRK08737 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=322.01 Aligned_cols=261 Identities=19% Similarity=0.239 Sum_probs=213.4
Q ss_pred CCChhHHHHHHHhhhcccCCCCC--cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeeccc
Q 018435 24 AKSDDSIIERFRAYLQIDTSQPN--PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (356)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~--~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dt 101 (356)
....++++++|++|++|||.+++ .++.++++||.++|+ |++++.++...+.+|+++.. | .|+|+|+||+||
T Consensus 2 ~~~~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~~-g----~~~lll~gH~Dt 74 (364)
T PRK08737 2 TDLLESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAVR-G----TPKYLFNVHLDT 74 (364)
T ss_pred CccHHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEEc-C----CCeEEEEeeeCC
Confidence 34567899999999999998653 347899999999996 99888766555678999863 4 268999999999
Q ss_pred CCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc
Q 018435 102 VPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (356)
Q Consensus 102 vp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (356)
||++ ..|+.+||.+.+ ++|++||||++|||++++++|.|++. +.++|.|+|+++||.|+..|++.+++.+.
T Consensus 75 Vp~~-~~w~~~Pf~~~~-~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v~~~~~~dEE~g~~~g~~~~~~~~~ 145 (364)
T PRK08737 75 VPDS-PHWSADPHVMRR-TDDRVIGLGVCDIKGAAAALLAAANA-------GDGDAAFLFSSDEEANDPRCVAAFLARGI 145 (364)
T ss_pred CCCC-CCCCCCCCceEE-ECCEEEEECcccchHHHHHHHHHHHc-------cCCCEEEEEEcccccCchhhHHHHHHhCC
Confidence 9997 489999999988 89999999999999999999999863 25689999999999986458888888652
Q ss_pred ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCC-CCC-CHHHHHHHHHHHHHcchhhhHHHHHhcc
Q 018435 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKL-YDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (356)
Q Consensus 182 ~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p-~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~ 259 (356)
..+.+++. +|+. ..++.+++|..+++|+++|+++|+|.| +.| ||+..+++++.++.++..... ...+
T Consensus 146 --~~~~~iv~-----Ept~-~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~~~~~~~~---~~~~ 214 (364)
T PRK08737 146 --PYEAVLVA-----EPTM-SEAVLAHRGISSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQALDHVESLA---HARF 214 (364)
T ss_pred --CCCEEEEc-----CCCC-ceeEEecceeEEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHHHHHHhhh---hhcc
Confidence 35666554 4663 578999999999999999999999998 477 999999999887654321110 0111
Q ss_pred cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 260 ~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
.. ....+++++.++||. +.|+||++|++++|+|+.|.++.+++.++|++.+.
T Consensus 215 ~~-~~~~t~~vg~i~GG~------~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~~~ 266 (364)
T PRK08737 215 GG-LTGLRFNIGRVEGGI------KANMIAPAAELRFGFRPLPSMDVDGLLATFAGFAE 266 (364)
T ss_pred CC-CCCCceEEeeEecCC------CCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHHHH
Confidence 11 124699999999998 99999999999999999999999999999986654
|
|
| >TIGR03320 ygeY M20/DapE family protein YgeY | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=327.05 Aligned_cols=279 Identities=15% Similarity=0.139 Sum_probs=223.9
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv 102 (356)
+++..+++++++++|++|||+ +++|.++++||.++|+++|+++..+ +..+|+++.+ |.+ .|+|+|+||+|||
T Consensus 8 i~~~~~~~~~~~~~lv~i~s~--s~~e~~~~~~l~~~l~~~G~~~~~~---~~~~n~~~~~-g~~--~~~l~l~~H~DtV 79 (395)
T TIGR03320 8 AKKYRGDMIRFLRDLVAIPSE--SGDEKRVAERIKEEMEKLGFDKVEI---DPMGNVLGYI-GHG--PKLIAMDAHIDTV 79 (395)
T ss_pred HHHHHHHHHHHHHHHHcCCCC--CCchHHHHHHHHHHHHHhCCcEEEE---CCCCCEEEEe-CCC--CcEEEEEeccccc
Confidence 344568899999999999997 5788999999999999999974322 3457899988 542 3789999999999
Q ss_pred CCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc
Q 018435 103 PSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (356)
Q Consensus 103 p~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (356)
|+++ .+|+++||++.+ +||++||||++|||++++++|.|++.|++.+..++.++.|+++++||.++..+.+++++...
T Consensus 80 p~~~~~~w~~~Pf~~~~-~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~~~ 158 (395)
T TIGR03320 80 GIGDSKQWQFDPYEGYE-DEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDG 158 (395)
T ss_pred CCCCccccccCCCceEE-ECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEecccccccCchHHHHHHHhcC
Confidence 9875 689999999998 89999999999999999999999999999887778899999999999753224566665533
Q ss_pred ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhccc
Q 018435 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (356)
Q Consensus 182 ~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~ 260 (356)
+ ..+.+++. +|+ ...++.+++|..+++|+++|+++|++.|+.+ ||+..+++++..+.++.... ..+.
T Consensus 159 ~-~~d~~iv~-----ep~-~~~i~~g~~G~~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~---~~~~-- 226 (395)
T TIGR03320 159 I-KPEFVVIT-----EPT-DMNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANL---VEDP-- 226 (395)
T ss_pred C-CCCEEEEc-----CCC-ccceEEecceEEEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHHHhh---cCCc--
Confidence 3 35666664 354 3578999999999999999999999999999 99999999999998764310 0011
Q ss_pred ccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEE
Q 018435 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEV 328 (356)
Q Consensus 261 ~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 328 (356)
.....+++++.+.+|.. +.|+||++|++.+|+|++|.++.+++.++|++.+.....++++++
T Consensus 227 -~~~~~t~~v~~i~~g~~-----~~NviP~~~~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~~ 288 (395)
T TIGR03320 227 -FLGKGTLTVSEIFFSSP-----SRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAVQGAEAKVEM 288 (395)
T ss_pred -ccCcCceeeeeeecCCC-----CcCccCCEEEEEEEEecCCCCCHHHHHHHHHHHHhhcCCCceEee
Confidence 11235888888887642 789999999999999999999999999999977642222344443
|
Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown. |
| >PRK07473 carboxypeptidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=320.92 Aligned_cols=273 Identities=16% Similarity=0.254 Sum_probs=224.8
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcCh---hHHHHHHHHHHHHCCCceEEEeecCC-CceEEEEecCCCCCCCcEEEEee
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDY---TNASKFILAQAEALSLESQTLEFAKN-KPLILLKWPGSNPQLPSILLNSH 98 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e---~~~~~~l~~~l~~~g~~~~~~~~~~~-~~nv~~~~~g~~~~~~~il~~aH 98 (356)
.....++++++|++|++|||.+ +++ .++++|+.++|+++|++++.++..++ .+|+++.+++.+++.|+|+|+||
T Consensus 6 ~~~~~~~~~~~l~~Lv~i~S~s--~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~gH 83 (376)
T PRK07473 6 LPFDSEAMLAGLRPWVECESPT--WDAAAVNRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAGH 83 (376)
T ss_pred CCcCHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEec
Confidence 4556889999999999999974 444 47788999999999999887654444 35899998754444589999999
Q ss_pred cccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhc
Q 018435 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD 178 (356)
Q Consensus 99 ~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~ 178 (356)
|||||+. ..|..+||. + ++|++||||++|||++++++|.|++.|++.+..++.+|.|+|+++||+|+ .|++.+++
T Consensus 84 ~DtV~~~-~~~~~~p~~--~-~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~-~g~~~~~~ 158 (376)
T PRK07473 84 MDTVHPV-GTLEKLPWR--R-EGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGT-PSTRDLIE 158 (376)
T ss_pred CCCCCCC-CCccCCCeE--E-ECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCC-ccHHHHHH
Confidence 9999875 469889995 5 78999999999999999999999999999887777899999999999987 69999998
Q ss_pred cccccCCceEEEEecCccCcCC-cceeEEeeeeeEEEEEEEEecCCccC-CCCCC-CHHHHHHHHHHHHHcchhhhHHHH
Q 018435 179 SHVFNSLNVGIVLDEGLASTTE-DYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLV 255 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~g~~~p~~-~~~i~~~~~G~~~~~v~~~G~~~Hs~-~p~~g-nai~~~~~~~~~i~~~~~~~~~~~ 255 (356)
+... ..+++++.+ |+. ...++.+++|..+++|+++|+++|++ .|+.+ ||+..+++++.+|.++..
T Consensus 159 ~~~~-~~d~~iv~e-----p~~~~~~v~~~~~G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~~~------ 226 (376)
T PRK07473 159 AEAA-RNKYVLVPE-----PGRPDNGVVTGRYAIARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAMTT------ 226 (376)
T ss_pred Hhhc-cCCEEEEeC-----CCCCCCCEEEECeeeEEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHhcC------
Confidence 6433 357777775 332 23689999999999999999999986 68888 999999999999876532
Q ss_pred HhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEE
Q 018435 256 KAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVV 329 (356)
Q Consensus 256 ~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (356)
...+++++.++||. ..|+||++|++.+++|.......+.+.+++.+.+. ...++++++.
T Consensus 227 --------~~~~~~vg~i~gg~------~~n~VP~~~~~~~d~r~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~ 285 (376)
T PRK07473 227 --------EDCTFSVGIVHGGQ------WVNCVATTCTGEALSMAKRQADLDRGVARMLALSG-TEDDVTFTVT 285 (376)
T ss_pred --------CCceEeEeeEEcCC------CCcCCCCceEEEEEEEeCCHhHHHHHHHHHHHhhC-cCCCeEEEEE
Confidence 12588999999997 89999999999999998887778888877766554 3456666664
|
|
| >PRK13004 peptidase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=325.15 Aligned_cols=280 Identities=15% Similarity=0.175 Sum_probs=228.0
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeeccc
Q 018435 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (356)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dt 101 (356)
.++...+++++++++|++|||. +++|.+++++|.++|+++|+++..+ +..+|+++.+.+. .|+|+|++|+||
T Consensus 9 ~~~~~~~~~~~~l~~lv~ips~--s~~e~~~a~~l~~~l~~~G~~~~~~---~~~~n~~a~~~~~---~~~i~~~~H~Dt 80 (399)
T PRK13004 9 LAEKYKADMTRFLRDLIRIPSE--SGDEKRVVKRIKEEMEKVGFDKVEI---DPMGNVLGYIGHG---KKLIAFDAHIDT 80 (399)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC--CCchHHHHHHHHHHHHHcCCcEEEE---cCCCeEEEEECCC---CcEEEEEeccCc
Confidence 3456678899999999999997 5789999999999999999975433 4567999988553 289999999999
Q ss_pred CCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccc
Q 018435 102 VPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (356)
Q Consensus 102 vp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (356)
||+++ ++|+.+||++.+ ++|++||||++|||++++++|.|++.|++.+..++++|.++|+++||.++..|+++++++.
T Consensus 81 Vp~~~~~~w~~~P~~~~~-~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~ 159 (399)
T PRK13004 81 VGIGDIKNWDFDPFEGEE-DDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEED 159 (399)
T ss_pred cCCCChhhcccCCCccEE-ECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEEcccccCcchhHHHHHHhc
Confidence 99865 689999999988 8999999999999999999999999999988878899999999999964324778888764
Q ss_pred cccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcc
Q 018435 181 VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (356)
Q Consensus 181 ~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~ 259 (356)
.+ ..+++++.+ |+ ...++++++|..+++|+++|+++|++.|+.+ ||+..+++++..+..+..... ..
T Consensus 160 ~~-~~d~~i~~e-----~~-~~~i~~~~~G~~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~~~~~~---~~-- 227 (399)
T PRK13004 160 KI-KPDFVVITE-----PT-DLNIYRGQRGRMEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEELNPNLK---ED-- 227 (399)
T ss_pred CC-CCCEEEEcc-----CC-CCceEEecceEEEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhhccccc---cC--
Confidence 44 357777653 43 3578899999999999999999999999998 999999999999987643200 00
Q ss_pred cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEE
Q 018435 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEV 328 (356)
Q Consensus 260 ~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 328 (356)
......+++++.+.+|.+ +.|+||++|++++|+|++|.++.+++.++|++..+....++++++
T Consensus 228 -~~~~~~~~~v~~i~~g~~-----~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~v~~ 290 (399)
T PRK13004 228 -PFLGKGTLTVSDIFSTSP-----SRCAVPDSCAISIDRRLTVGETWESVLAEIRALPAVKKANAKVSM 290 (399)
T ss_pred -CcCCCceEEEeeeecCCC-----CCCccCCEEEEEEEEcCCCCCCHHHHHHHHHHHHhhccccceEEE
Confidence 011235778888876531 899999999999999999999999999999876432233444443
|
|
| >PRK07338 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=327.31 Aligned_cols=275 Identities=20% Similarity=0.268 Sum_probs=226.3
Q ss_pred CCCChhHHHHHHHhhhcccCCCCC-cChhHHHHHHHHHHHHCCCceEEEeecC--------------CCceEEEEecCCC
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAK--------------NKPLILLKWPGSN 87 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~g~~~~~~~~~~--------------~~~nv~~~~~g~~ 87 (356)
++...+++++.|++|++|||.+.. .++.++++||.++|+++|++++.++..+ ..+||++++++..
T Consensus 12 ~~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~~~~ 91 (402)
T PRK07338 12 IDDRQAPMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPALHVSVRPEA 91 (402)
T ss_pred HhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCeEEEEECCCC
Confidence 556678999999999999997532 2256899999999999999988654321 1269999996543
Q ss_pred CCCCcEEEEeecccCCCCCCCCCCCCCCee--eCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecc
Q 018435 88 PQLPSILLNSHTDVVPSEPSKWSHHPFGAH--LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165 (356)
Q Consensus 88 ~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~--~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~E 165 (356)
.++|+|+||+||||+++ +||++. + +||++||||++|||++++++|+|++.|++.+..+++++.|+|+++|
T Consensus 92 --~~~lll~gH~DvVp~~~-----~Pf~~~~~~-~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~dE 163 (402)
T PRK07338 92 --PRQVLLTGHMDTVFPAD-----HPFQTLSWL-DDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLINPDE 163 (402)
T ss_pred --CccEEEEeecCccCCCC-----CcccCCeEe-eCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEECCc
Confidence 25899999999999853 799975 6 8999999999999999999999999999888777889999999999
Q ss_pred ccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCC-CCCC-CHHHHHHHHHHH
Q 018435 166 EIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK-LYDN-SAMENLFKSIES 243 (356)
Q Consensus 166 E~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~-p~~g-nai~~~~~~~~~ 243 (356)
|+|+ .|++.++++.. ...+++++++.+. + ...+..+++|..+++|+++|+++|++. |+.+ ||+..+++++..
T Consensus 164 E~g~-~g~~~~~~~~~-~~~~~~i~~ep~~--~--~~~v~~~~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~~~i~~ 237 (402)
T PRK07338 164 EIGS-PASAPLLAELA-RGKHAALTYEPAL--P--DGTLAGARKGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAAELALA 237 (402)
T ss_pred ccCC-hhhHHHHHHHh-ccCcEEEEecCCC--C--CCcEEeecceeEEEEEEEEeEcccCCCCcccCccHHHHHHHHHHH
Confidence 9987 58888888643 2346677775321 1 236788999999999999999999996 7778 999999999999
Q ss_pred HHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CC
Q 018435 244 VRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--AS 321 (356)
Q Consensus 244 i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~ 321 (356)
+.++... ....+++++.++||. +.|+||++|++++|+|+.|.++.+++.++|++.+.. ..
T Consensus 238 l~~l~~~------------~~~~t~~vg~i~gG~------~~nvVP~~a~~~~d~R~~~~~~~~~v~~~i~~~~~~~~~~ 299 (402)
T PRK07338 238 LHALNGQ------------RDGVTVNVAKIDGGG------PLNVVPDNAVLRFNIRPPTPEDAAWAEAELKKLIAQVNQR 299 (402)
T ss_pred HHhhhcc------------CCCcEEEEEEEecCC------CCceeccccEEEEEeccCCHHHHHHHHHHHHHHHhccccC
Confidence 8776431 123689999999997 999999999999999999999999999999987763 24
Q ss_pred CCceEEEE
Q 018435 322 RNMTFEVV 329 (356)
Q Consensus 322 ~~~~~~~~ 329 (356)
.++++++.
T Consensus 300 ~~~~~~~~ 307 (402)
T PRK07338 300 HGVSLHLH 307 (402)
T ss_pred CCeEEEEE
Confidence 56777664
|
|
| >TIGR03526 selenium_YgeY putative selenium metabolism hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=324.73 Aligned_cols=279 Identities=14% Similarity=0.133 Sum_probs=224.6
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv 102 (356)
+++..+++++++++|++|||+ +++|.+++++|.++|+++|+++..+ +..+|+++.+ |.+ .++|+|+||+|||
T Consensus 8 ~~~~~~~~~~~l~~Lv~ips~--s~~e~~~~~~l~~~l~~~g~~~~~~---~~~~~v~~~~-g~~--~~~l~l~~H~DtV 79 (395)
T TIGR03526 8 AEKYRGDMIRFLRDLVAIPSE--SGDEGRVALRIKQEMEKLGFDKVEI---DPMGNVLGYI-GHG--PKLIAMDAHIDTV 79 (395)
T ss_pred HHHHHHHHHHHHHHHhcCCCC--CCchHHHHHHHHHHHHHcCCceEEE---cCCCcEEEEe-CCC--CCEEEEEeecccc
Confidence 334557899999999999997 5789999999999999999975322 3457899988 543 3789999999999
Q ss_pred CCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc
Q 018435 103 PSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (356)
Q Consensus 103 p~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (356)
|+++ .+|+++||.+.+ ++|++||||++|||++++++|.|++.|++.+..+++++.|+++++||.++..|..++++++.
T Consensus 80 p~~~~~~W~~~Pf~~~~-~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~~~ 158 (395)
T TIGR03526 80 GIGDMDQWQFDPYEGYE-DEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDK 158 (395)
T ss_pred CCCCcccccCCCCceEE-ECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEecccccCCcHhHHHHHhccC
Confidence 9875 689999999998 89999999999999999999999999999887677899999999999432136677776544
Q ss_pred ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhccc
Q 018435 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (356)
Q Consensus 182 ~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~ 260 (356)
+. .+.+++. +|+ ...+..+++|..+++|+++|+++|++.|+.+ ||+..+++++..+.++..... .+.
T Consensus 159 ~~-~d~~i~~-----ep~-~~~i~~g~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~---~~~-- 226 (395)
T TIGR03526 159 IK-PEFVVIT-----EPT-DMNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLV---EDP-- 226 (395)
T ss_pred CC-CCEEEec-----CCC-CceEEEEcceEEEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhhhhhc---CCc--
Confidence 43 5666654 354 3578999999999999999999999999999 999999999999887643200 011
Q ss_pred ccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEE
Q 018435 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEV 328 (356)
Q Consensus 261 ~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 328 (356)
.....+++++.+++|.. +.|+||++|++++|+|++|.++.+++.++|++.+.....++++++
T Consensus 227 -~~~~~~~~v~~i~~g~~-----~~nviP~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 288 (395)
T TIGR03526 227 -FLGKGTLTVSEIFFSSP-----SRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAVQGAEAEVEM 288 (395)
T ss_pred -ccCccceeeeeeecCCC-----CCCccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHhcCCcceEEE
Confidence 11236888999987632 789999999999999999999999999999987652222344443
|
SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types. |
| >PRK07079 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=327.42 Aligned_cols=296 Identities=19% Similarity=0.191 Sum_probs=223.6
Q ss_pred hHHHHHHHhhhcccCCCCC-cChhHHHHHHH----HHHHHCCCceEEEeec--CCCceEEEEecCCCCCCCcEEEEeecc
Q 018435 28 DSIIERFRAYLQIDTSQPN-PDYTNASKFIL----AQAEALSLESQTLEFA--KNKPLILLKWPGSNPQLPSILLNSHTD 100 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~----~~l~~~g~~~~~~~~~--~~~~nv~~~~~g~~~~~~~il~~aH~D 100 (356)
++++++|++|++|||+|+. .++.+++++|. ++|+++|++++.++.. .+++||++.+.+.. +.|+|+|+||+|
T Consensus 17 ~~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva~~~~~~-~~~~lll~gH~D 95 (469)
T PRK07079 17 GAFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIAERIEDD-ALPTVLIYGHGD 95 (469)
T ss_pred HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEEEeCCCC-CCCEEEEEcccC
Confidence 5799999999999998753 34556777764 5899999999876643 46789999985543 348999999999
Q ss_pred cCCCCCCCCC--CCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHc-CCCCcccEEEEEeeccccCccccHHHHh
Q 018435 101 VVPSEPSKWS--HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS-GFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (356)
Q Consensus 101 tvp~~~~~w~--~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~-~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (356)
|||+++++|+ ++||++++ +||++||||++|||++++++|+|++.|.+. +..+.++|.|+++++||+|+ .|+++++
T Consensus 96 vVp~~~~~W~~~~~Pf~~~~-~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~~~~i~~~~~~dEE~g~-~G~~~l~ 173 (469)
T PRK07079 96 VVRGYDEQWREGLSPWTLTE-EGDRWYGRGTADNKGQHTINLAALEQVLAARGGRLGFNVKLLIEMGEEIGS-PGLAEVC 173 (469)
T ss_pred CCCCChHHhcccCCCCcccc-cCCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCC-ccHHHHH
Confidence 9998767899 59999999 999999999999999999999999998753 46788999999999999997 6999999
Q ss_pred cccc-ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEec--CCccCCCCC-C-CHHHHHHHHHHHHHcchh---
Q 018435 178 DSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGA--PGHGAKLYD-N-SAMENLFKSIESVRRFRA--- 249 (356)
Q Consensus 178 ~~~~-~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~--~~Hs~~p~~-g-nai~~~~~~~~~i~~~~~--- 249 (356)
++.. ....|.+++.+.+...++ ...++++++|..+++|+++|+ +.||+.... + ||+..++.++..+.+...
T Consensus 174 ~~~~~~~~~d~~iv~e~~~~~~~-~~~i~~g~kG~~~~~v~v~G~~~~~hs~~~~g~~~nai~~l~~ai~~l~~~~~~~~ 252 (469)
T PRK07079 174 RQHREALAADVLIASDGPRLSAE-RPTLFLGSRGAVNFRLRVNLRDGAHHSGNWGGLLRNPGTVLAHAIASLVDARGRIQ 252 (469)
T ss_pred HHhHHhcCCCEEEEeCCCccCCC-CeEEEEecceEEEEEEEEeeCCCCCCCCccccccCCHHHHHHHHHHHhCCCCCCEe
Confidence 8642 123577777654432233 356999999999999999997 456664222 2 999999999988754210
Q ss_pred -----------hhHHHHHh---ccc-------------------ccCCceeeeEeeeecCCCCCCCccccccCCeEEEEE
Q 018435 250 -----------SQFDLVKA---GLK-------------------AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGF 296 (356)
Q Consensus 250 -----------~~~~~~~~---~~~-------------------~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~ 296 (356)
.....+.. ... ..-..+++|++.++||.. ..+.|+||++|++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nv~~i~gG~~---~~~~NvVP~~a~~~v 329 (469)
T PRK07079 253 VPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTPAERVFGWNTLEVLAFKTGNP---DAPVNAIPGSARAVC 329 (469)
T ss_pred cCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCHHHHHhhCCceEEEeeecCCC---CCcceEecCceEEEE
Confidence 00000000 000 001135889999998841 115899999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEEe
Q 018435 297 DIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVVI 330 (356)
Q Consensus 297 diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~ 330 (356)
|+|++|.++.+++.++|++.+.. ...++++++..
T Consensus 330 diR~~P~~~~e~v~~~l~~~i~~~~~~~v~~~~~~ 364 (469)
T PRK07079 330 QLRFVVGTDWENLAPHLRAHLDAHGFPMVEVTVER 364 (469)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 99999999999999999988863 22345555443
|
|
| >TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=314.25 Aligned_cols=258 Identities=19% Similarity=0.224 Sum_probs=206.3
Q ss_pred HHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCc-eEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC---CC
Q 018435 33 RFRAYLQIDTSQPNPDYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP---SK 108 (356)
Q Consensus 33 ~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~-~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~---~~ 108 (356)
+|++|++|||+ +++|.+++++|.++|+++|+. ++. .. ..+||++++.+. + .++|+|+|||||||+++ ..
T Consensus 1 ll~~Lv~ipS~--s~~e~~~~~~i~~~l~~~g~~~~~~-~~--~~~nvva~~~~~-~-~~~l~l~gH~DtVp~~~~~~~~ 73 (373)
T TIGR01900 1 LLQQIMDIFSP--SDHEGPIADEIEAALNNLELEGLEV-FR--FGDNVLARTDFG-K-ASRVILAGHIDTVPIADNFPPK 73 (373)
T ss_pred ChHHHhCCCCC--CchHHHHHHHHHHHHhhccccCceE-EE--ECCEEEEecCCC-C-CCeEEEeCccccccCCCCChhh
Confidence 47899999997 578999999999999999653 221 11 134899998432 2 47899999999999864 46
Q ss_pred CCCCCC--------CeeeCCCCeEEecCcccchHHHHHHHHHHHHHHH--cCCCCcccEEEEEeeccccCc-cccHHHHh
Q 018435 109 WSHHPF--------GAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKA--SGFQPVRSVYLSFVPDEEIGG-HDGAEKFA 177 (356)
Q Consensus 109 w~~~P~--------~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~--~~~~~~~~i~~~~~~~EE~g~-~~G~~~~~ 177 (356)
|+.+|| .+.+ +||++||||++|||++++++|+|++.|++ .+..++++|.|+|+++||+|+ ..|+..++
T Consensus 74 W~~~p~~~~~~~~~~~~~-~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~ 152 (373)
T TIGR01900 74 WLEPGDSLIREEIAHAHP-EDGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGHIR 152 (373)
T ss_pred hccCcccccccccccccc-cCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEecccccCCCCCHHHHH
Confidence 998775 4567 89999999999999999999999999964 345678999999999999863 24899988
Q ss_pred cccc-ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHH
Q 018435 178 DSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLV 255 (356)
Q Consensus 178 ~~~~-~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~ 255 (356)
++.. +...+.+++. +|++ ..++++++|..+++|+++|+++|++.|+.+ ||+..+++++..|.++......
T Consensus 153 ~~~~~~~~~d~~iv~-----Ept~-~~i~~g~~G~~~~~i~v~G~~~H~s~p~~g~NAi~~~~~~i~~l~~l~~~~~~-- 224 (373)
T TIGR01900 153 DAHPDWLAADFAIIG-----EPTG-GGIEAGCNGNIRFDVTAHGVAAHSARAWLGDNAIHKAADIINKLAAYEAAEVN-- 224 (373)
T ss_pred HhCcccccCCEEEEE-----CCCC-CcccccceeeEEEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHHhhccccc--
Confidence 7632 2235666665 3553 478999999999999999999999999999 9999999999999775421100
Q ss_pred HhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHH
Q 018435 256 KAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVE 315 (356)
Q Consensus 256 ~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~ 315 (356)
........+++++.++||. +.|+||++|++.+|+|+.|.++.+++.++|++
T Consensus 225 ---~~~~~~~~t~~v~~I~GG~------~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~~ 275 (373)
T TIGR01900 225 ---IDGLDYREGLNATFCEGGK------ANNVIPDEARMHLNFRFAPDKDLAEAKALMMG 275 (373)
T ss_pred ---ccCCcccceEEEEEEeCCC------CCcccCCeEEEEEEEecCCCcCHHHHHHHHHh
Confidence 0011123689999999997 99999999999999999999999999999853
|
This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546. |
| >COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=309.81 Aligned_cols=289 Identities=25% Similarity=0.404 Sum_probs=225.7
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCC--CceEEEEecCCCCCCCcEEEEeecccCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKN--KPLILLKWPGSNPQLPSILLNSHTDVVP 103 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~--~~nv~~~~~g~~~~~~~il~~aH~Dtvp 103 (356)
..++++++|++|++|||++ ...+.++++++.++|+++|+.++....... .+|+++.+.+..+. |+|+|+||+||||
T Consensus 11 ~~~~~~~~l~~lv~~~s~s-~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~l~l~~H~DvVP 88 (409)
T COG0624 11 LLDDILELLKELVRIPSVS-AGEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDGG-PTLLLGGHLDVVP 88 (409)
T ss_pred hhHHHHHHHHHHhcCCCCC-cccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCCC-CeEEEeccccccC
Confidence 4577889999999999985 478999999999999999998887554432 57999999776543 8999999999999
Q ss_pred CCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc-
Q 018435 104 SEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV- 181 (356)
Q Consensus 104 ~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~- 181 (356)
+++ ..|+.+||++++ ++|++||||++||||+++++++|++.+.+.+..++++|.++++++||+|+ .|+..++....
T Consensus 89 ~g~~~~W~~~Pf~~~~-~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~-~~~~~~~~~~~~ 166 (409)
T COG0624 89 AGGGEDWTTDPFEPTI-KDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGG-AGGKAYLEEGEE 166 (409)
T ss_pred CCCcccCccCCCccEE-ECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCC-cchHHHHHhcch
Confidence 987 799999999999 78999999999999999999999999999887889999999999999998 68887777643
Q ss_pred --ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCC--CCCC-CHH----HHHHHHHHHHHcchhhhH
Q 018435 182 --FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK--LYDN-SAM----ENLFKSIESVRRFRASQF 252 (356)
Q Consensus 182 --~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~--p~~g-nai----~~~~~~~~~i~~~~~~~~ 252 (356)
....+.+++.+.. ....+...++.+++|..+++|+++|+++|+|. |..+ |++ ..+.+++..+.++....+
T Consensus 167 ~~~~~~d~~i~~E~~-~~~~~~~~~~~~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~~~ 245 (409)
T COG0624 167 ALGIRPDYEIVGEPT-LESEGGDIIVVGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEGF 245 (409)
T ss_pred hhccCCCEEEeCCCC-CcccCCCeEEEcceeEEEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhcccccccc
Confidence 2345777777641 11223457777999999999999999999998 7777 954 444444444433322110
Q ss_pred HHHHhcccccCCceeeeEeeeecCCC--CCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEE
Q 018435 253 DLVKAGLKAEGEVVSVNMAFLKAGTP--SPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEV 328 (356)
Q Consensus 253 ~~~~~~~~~~~~~~~v~~~~i~~g~~--~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~ 328 (356)
....+++++.+.++.. ..++...|+||++|++.+|+|+.|.++.+++.+++++.+.. ...++++++
T Consensus 246 ----------~~~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~~~~~~~~ 315 (409)
T COG0624 246 ----------DGPLGLNVGLILAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELEAELRAIAPKEGVEYEI 315 (409)
T ss_pred ----------cCCccccccccccCCcccccCCccCceecceEEEEEEEecCCcCCHHHHHHHHHHHHHHhccccCceEEe
Confidence 0035666666665542 12333679999999999999999999998888888876762 234666666
Q ss_pred E
Q 018435 329 V 329 (356)
Q Consensus 329 ~ 329 (356)
.
T Consensus 316 ~ 316 (409)
T COG0624 316 E 316 (409)
T ss_pred c
Confidence 5
|
|
| >PRK00466 acetyl-lysine deacetylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=302.29 Aligned_cols=239 Identities=24% Similarity=0.291 Sum_probs=200.9
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCCC
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPS 107 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~ 107 (356)
.+++++|++|++|||. +++|.++++||.++|+++|++++.. ..+|+++ .| .|+|+|+||+||||.
T Consensus 10 ~~~~~~l~~lv~i~s~--s~~e~~~~~~l~~~l~~~g~~~~~~----~~~~~~~--~g----~~~lll~gH~DtVp~--- 74 (346)
T PRK00466 10 QKAKELLLDLLSIYTP--SGNETNATKFFEKISNELNLKLEIL----PDSNSFI--LG----EGDILLASHVDTVPG--- 74 (346)
T ss_pred HHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHHcCCeEEEe----cCCCcEe--cC----CCeEEEEeccccCCC---
Confidence 6889999999999995 6789999999999999999988763 2345553 33 267999999999984
Q ss_pred CCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCce
Q 018435 108 KWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNV 187 (356)
Q Consensus 108 ~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~ 187 (356)
+|++.+ ++|++||||++|||++++++|+|++.|++.+ .++.|+|+++||.|+ .|++++++++ . ..|.
T Consensus 75 -----~~~~~~-~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~-~G~~~l~~~~-~-~~d~ 141 (346)
T PRK00466 75 -----YIEPKI-EGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEESTS-IGAKELVSKG-F-NFKH 141 (346)
T ss_pred -----CCCcee-eCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCcccCC-ccHHHHHhcC-C-CCCE
Confidence 256677 8999999999999999999999999998876 358999999999986 6999999875 2 3565
Q ss_pred EEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHHHHHcchhhhHHHHHhcccccCCcee
Q 018435 188 GIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVS 267 (356)
Q Consensus 188 ~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 267 (356)
+++. +|++...++++++|..+++|+++|+++|++.|.. ||+..+++++..+.++... ....+
T Consensus 142 ~i~~-----ep~~~~~i~~~~kG~~~~~i~v~G~~~Has~p~~-nAi~~~~~~l~~l~~~~~~------------~~~~t 203 (346)
T PRK00466 142 IIVG-----EPSNGTDIVVEYRGSIQLDIMCEGTPEHSSSAKS-NLIVDISKKIIEVYKQPEN------------YDKPS 203 (346)
T ss_pred EEEc-----CCCCCCceEEEeeEEEEEEEEEEeeccccCCCCc-CHHHHHHHHHHHHHhcccc------------CCCCc
Confidence 5554 4654457999999999999999999999998753 9999999999888654221 12368
Q ss_pred eeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 268 VNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 268 v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
++++.++||. +.|+||++|++.+|+|++|.++.+++.++|++.+.
T Consensus 204 ~~~~~i~gG~------~~NvvP~~a~~~~diR~~p~~~~~~v~~~i~~~~~ 248 (346)
T PRK00466 204 IVPTIIRAGE------SYNVTPAKLYLHFDVRYAINNKRDDLISEIKDKFQ 248 (346)
T ss_pred ceeeEEecCC------cCcccCCceEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 8899999987 99999999999999999999999999999998775
|
|
| >PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=299.09 Aligned_cols=256 Identities=17% Similarity=0.218 Sum_probs=209.2
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHC-CCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL-SLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~-g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~ 104 (356)
..+++++++++|++|||+ +++|.++++||.++|+++ |+++.. ...|+++++.+ +. .++|+|+||+||||+
T Consensus 5 ~~~~~~~~l~~li~ips~--s~~e~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~~~~~-~~-~~~i~l~~H~Dtvp~ 75 (352)
T PRK13007 5 LAADLAELTAALVDIPSV--SGDEKALADAVEAALRALPHLEVIR-----HGNSVVARTDL-GR-PSRVVLAGHLDTVPV 75 (352)
T ss_pred hHHHHHHHHHHHhcCCCC--CchHHHHHHHHHHHHHhCcCceEEe-----cCCeEEEEccC-CC-CCeEEEEccccccCC
Confidence 347899999999999997 578999999999999996 877654 23689999843 22 358999999999998
Q ss_pred CCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCcc-ccHHHHhccc-cc
Q 018435 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH-DGAEKFADSH-VF 182 (356)
Q Consensus 105 ~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~-~G~~~~~~~~-~~ 182 (356)
.+ ||.+.+ +||++||||++|||+++|++|+|++.|. .++++|.|+|+++||.|+. .|++.+++.. .+
T Consensus 76 ~~------~~~~~~-~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~~EE~~~~~~G~~~~~~~~~~~ 144 (352)
T PRK13007 76 AD------NLPSRR-EGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFYDCEEVEAEANGLGRLAREHPEW 144 (352)
T ss_pred CC------CCCcce-eCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEEecccccCCcccHHHHHHhcccc
Confidence 63 456667 8999999999999999999999999983 3578999999999998642 4888888653 23
Q ss_pred cCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccc
Q 018435 183 NSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKA 261 (356)
Q Consensus 183 ~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~ 261 (356)
...|++++.+ |+. ..++++++|..+++|+++|+++||+.|+.+ ||+..+++++..+.++...+.. ...
T Consensus 145 ~~~d~~i~~e-----p~~-~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~-----~~~ 213 (352)
T PRK13007 145 LAGDFAILLE-----PTD-GVIEAGCQGTLRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPREVV-----VDG 213 (352)
T ss_pred cCCCEEEEec-----CCC-CceEeeccceEEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhcccccc-----cCC
Confidence 3467777764 442 468899999999999999999999999988 9999999999998875432100 000
Q ss_pred cCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 262 ~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
.....+++++.++||. +.|+||++|++++|+|++|.++.+++.++|++.+.
T Consensus 214 ~~~~~~~~~~~i~gG~------~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~~~ 264 (352)
T PRK13007 214 LTYREGLNAVRISGGV------AGNVIPDECVVNVNYRFAPDRSLEEALAHVREVFD 264 (352)
T ss_pred CCccceeEeEeEecCC------cCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHHhc
Confidence 1113578899999987 99999999999999999999999999999998775
|
|
| >TIGR01886 dipeptidase dipeptidase PepV | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=312.73 Aligned_cols=273 Identities=18% Similarity=0.281 Sum_probs=205.0
Q ss_pred CCCChhHHHHHHHhhhcccCCCC----------CcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCc
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQP----------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPS 92 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~----------~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~ 92 (356)
+.+..++++++|++|++|||+++ ..++.++++++.++|+++||+++.++. .++.+.+.+ +.|+
T Consensus 8 i~~~~~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~------~~~~~~~~~-~~~~ 80 (466)
T TIGR01886 8 VEARKDALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFDN------YAGHVEYGA-GDER 80 (466)
T ss_pred HHHhHHHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEecC------CceeEEecC-CCCE
Confidence 34567899999999999999853 135678999999999999999886442 222222222 3479
Q ss_pred EEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCcccc
Q 018435 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDG 172 (356)
Q Consensus 93 il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G 172 (356)
|+|++|+||||++ ++|+++||++++ +||+|||||++||||+++++|.|++.|++.+..++++|.|+++++||+|+ .|
T Consensus 81 l~~~gH~DvVp~~-~~W~~~Pf~~~~-~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~g 157 (466)
T TIGR01886 81 LGIIGHMDVVPAG-EGWTRDPFEPEI-DEGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRFVVGTNEETGW-VD 157 (466)
T ss_pred EEEEeecccCCCC-CCCcCCCCCeEE-ECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEEEEECccccCc-cc
Confidence 9999999999997 579999999999 99999999999999999999999999999998889999999999999997 69
Q ss_pred HHHHhccccccCCceEEEEecCcc----CcCCcce---------------------------------eE----------
Q 018435 173 AEKFADSHVFNSLNVGIVLDEGLA----STTEDYR---------------------------------AF---------- 205 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~g~~----~p~~~~~---------------------------------i~---------- 205 (356)
++++++++.. .+++++.|.+.. +++. .. +.
T Consensus 158 ~~~~~~~~~~--~d~~~~~d~~~~~~~ge~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~ 234 (466)
T TIGR01886 158 MDYYFKHEET--PDFGFSPDAEFPIINGEKGN-FTLELSFKGDNKGDYVLDSFKAGLAENMVPQVARAVISGPDAEALKA 234 (466)
T ss_pred HHHHHhcCcC--CCEEEECCCCceeEEEecce-EEEEEEEecCCCCceeEEEEEcCCcCCccCCeeEEEEecCCHHHHHH
Confidence 9999986542 455444332110 1110 01 11
Q ss_pred -----EeeeeeE---------EEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcch--hhhHHHHHh---------c-
Q 018435 206 -----YAERCPW---------WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFR--ASQFDLVKA---------G- 258 (356)
Q Consensus 206 -----~~~~G~~---------~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~--~~~~~~~~~---------~- 258 (356)
.+++|.. |++|+++|+++|++.|+.| ||+..|++++..+.... ...+..+.. .
T Consensus 235 ~~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 314 (466)
T TIGR01886 235 AYESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKL 314 (466)
T ss_pred HHHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCcccC
Confidence 1244433 7889999999999999999 99999999887631100 000011100 0
Q ss_pred ----ccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 259 ----LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 259 ----~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
.......+++|++.+++|. . | ++|++.+|+|++|.++.+++.++|++.+.
T Consensus 315 ~~~~~~~~~g~~S~nvgvI~gG~------~-~---~~~~l~iD~R~~Pge~~eev~~eI~~~i~ 368 (466)
T TIGR01886 315 GIAFHDELMGDLAMNAGMFDFDH------A-N---KESKLLLNFRYPQGTSPETMQKQVLDKFG 368 (466)
T ss_pred CCcccccCcCceEEEeEEEEEec------C-C---ceEEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 0111235799999999985 3 3 79999999999999999999999998776
|
This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus. |
| >PRK08652 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=297.49 Aligned_cols=260 Identities=19% Similarity=0.242 Sum_probs=209.6
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCCC
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPS 107 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~ 107 (356)
+++++++++|++|||. +++|.++++||.++|+++|++++.... .+.+|+++ + +.|+|+|+|||||||...
T Consensus 2 ~~~~~~~~~lv~ips~--s~~e~~~~~~l~~~l~~~G~~v~~~~~-~~~~~~~~---~---~~~~i~l~~H~D~vp~~~- 71 (347)
T PRK08652 2 ERAKELLKQLVKIPSP--SGQEDEIALHIMEFLESLGYDVHIESD-GEVINIVV---N---SKAELFVEVHYDTVPVRA- 71 (347)
T ss_pred hhHHHHHHHHhcCCCC--CCchHHHHHHHHHHHHHcCCEEEEEec-CceeEEEc---C---CCCEEEEEccccccCCCC-
Confidence 5789999999999997 578999999999999999999876432 23567765 2 237999999999999742
Q ss_pred CCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCce
Q 018435 108 KWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNV 187 (356)
Q Consensus 108 ~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~ 187 (356)
+| .+ +||++||||++|||++++++|+|++.|.+.. ++++|.|+|+++||.|+ .|++++++.. . .++
T Consensus 72 ----~~---~~-~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~v~~~~~~dEE~g~-~G~~~~~~~~--~-~d~ 137 (347)
T PRK08652 72 ----EF---FV-DGVYVYGTGACDAKGGVAAILLALEELGKEF--EDLNVGIAFVSDEEEGG-RGSALFAERY--R-PKM 137 (347)
T ss_pred ----CC---EE-ECCEEEeccchhhhHHHHHHHHHHHHHhhcc--cCCCEEEEEecCcccCC-hhHHHHHHhc--C-CCE
Confidence 23 35 7899999999999999999999999998653 36799999999999987 5999998752 2 367
Q ss_pred EEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCce
Q 018435 188 GIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266 (356)
Q Consensus 188 ~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 266 (356)
+++.+ |+. ..++++++|..+++|+++|+++|++.|+.+ ||+.++++++..+.++.... ... .. .
T Consensus 138 ~i~~e-----p~~-~~i~~~~~g~~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~~~~----~~~---~~--~ 202 (347)
T PRK08652 138 AIVLE-----PTD-LKVAIAHYGNLEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELLKAL----GKY---FD--P 202 (347)
T ss_pred EEEec-----CCC-CceeeecccEEEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHHHhh----hcc---cC--C
Confidence 77774 432 468899999999999999999999999998 99999999999997754321 111 11 2
Q ss_pred eeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEeeccc
Q 018435 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVINSLS 334 (356)
Q Consensus 267 ~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 334 (356)
+++++.++||. ..|++|++|++.+|+|+++.++.+++.++|++.+. ..++++++....++
T Consensus 203 ~~~~~~i~gg~------~~nviP~~~~~~~diR~~~~~~~~~v~~~i~~~~~--~~~v~~~~~~~~~~ 262 (347)
T PRK08652 203 HIGIQEIIGGS------PEYSIPALCRLRLDARIPPEVEVEDVLDEIDPILD--EYTVKYEYTEIWDG 262 (347)
T ss_pred CCcceeeecCC------CCCccCCcEEEEEEEEcCCCCCHHHHHHHHHHHHH--hcCceEEEeccCCc
Confidence 45666788887 89999999999999999999999999999998775 24566655433334
|
|
| >PRK07205 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=307.16 Aligned_cols=279 Identities=20% Similarity=0.263 Sum_probs=198.5
Q ss_pred CChhHHHHHHHhhhcccCCCCCcC--------hhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEE
Q 018435 25 KSDDSIIERFRAYLQIDTSQPNPD--------YTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLN 96 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~--------e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~ 96 (356)
+..++++++|++|++|||+++... ..++++++.++|+++|++++..+ ++ .++++.+ |++ .|+|+|+
T Consensus 8 ~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~-~~~~~~~-g~~--~~~lll~ 81 (444)
T PRK07205 8 KVQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDP--KG-YYGYAEI-GQG--EELLAIL 81 (444)
T ss_pred HhHHHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcC--CC-eEEEEEe-cCC--CcEEEEE
Confidence 456899999999999999864321 25788999999999999887532 22 4566666 542 4799999
Q ss_pred eecccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHH
Q 018435 97 SHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEK 175 (356)
Q Consensus 97 aH~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 175 (356)
||+||||+++ ++|+++||++++ +||++||||++||||+++++|.|++.|++.+..++++|.|+|+++||+|+ .|+++
T Consensus 82 gH~DvVp~~~~~~W~~~Pf~~~v-~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~-~g~~~ 159 (444)
T PRK07205 82 CHLDVVPEGDLSDWQTPPFEAVE-KDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIFGTDEETLW-RCMNR 159 (444)
T ss_pred EeeccCCCCCcccCCCCCCceEE-ECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCc-ccHHH
Confidence 9999999965 689999999999 99999999999999999999999999999988889999999999999997 68888
Q ss_pred HhccccccC----Cc--eEEEEecC-c------cCcCCcceeEEe-----------eeee------------------EE
Q 018435 176 FADSHVFNS----LN--VGIVLDEG-L------ASTTEDYRAFYA-----------ERCP------------------WW 213 (356)
Q Consensus 176 ~~~~~~~~~----~~--~~~~~~~g-~------~~p~~~~~i~~~-----------~~G~------------------~~ 213 (356)
+++.....+ .+ ..++..+. . ..|+....+..+ ++|. .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~ 239 (444)
T PRK07205 160 YNEVEEQATMGFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQAFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKE 239 (444)
T ss_pred HHhCCCCCCeeECCCCCCceEEEEeceEEEEEEeCCccceEEecCCcccccCceeEEEecCHHHHHHHHHhcCceEeecC
Confidence 887421110 00 10111110 0 011110000000 1221 23
Q ss_pred EEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcc--------------cccCCceeeeEeeeecCCC
Q 018435 214 LVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL--------------KAEGEVVSVNMAFLKAGTP 278 (356)
Q Consensus 214 ~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~--------------~~~~~~~~v~~~~i~~g~~ 278 (356)
.+++++|+++|++.|+.| ||+..+++++..+.+.... +.+...+ ......+++|+ |
T Consensus 240 ~~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nv-----g-- 310 (444)
T PRK07205 240 NEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPHPAL--DFLANVIGEDATGLNIFGDIEDEPSGKLSFNI-----A-- 310 (444)
T ss_pred cEEEEEeEEcccCCCccCcCHHHHHHHHHHhccHHHHH--HHHHHhcCCCCccccCCccccCCCcCCceEEe-----E--
Confidence 389999999999999988 9999999988887643211 1010000 00011233333 1
Q ss_pred CCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEE
Q 018435 279 SPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFE 327 (356)
Q Consensus 279 ~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 327 (356)
..|+||++|++.+|+|++|.++.+++.++|++.+.. .+++++
T Consensus 311 -----~~nvvP~~a~~~ld~R~~p~~~~e~v~~~i~~~~~~--~~v~~~ 352 (444)
T PRK07205 311 -----GLTITKEKSEIRIDIRIPVLADKEKLVQQLSQKAQE--YGLTYE 352 (444)
T ss_pred -----EEEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHH--cCcEEE
Confidence 457999999999999999999999999999876642 345544
|
|
| >PRK04443 acetyl-lysine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=296.26 Aligned_cols=262 Identities=18% Similarity=0.154 Sum_probs=205.9
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
..++++++|++|++|||+ +++|.++++|+.++|+++|++++. +..+|+++.+ |.. .|+|+|+||+||||..
T Consensus 4 ~~~~~~~~l~~Lv~i~s~--s~~e~~~~~~l~~~l~~~G~~~~~----~~~~n~i~~~-~~~--~~~l~~~~H~DtVp~~ 74 (348)
T PRK04443 4 SALEARELLKGLVEIPSP--SGEEAAAAEFLVEFMESHGREAWV----DEAGNARGPA-GDG--PPLVLLLGHIDTVPGD 74 (348)
T ss_pred chHHHHHHHHHHHcCCCC--CCChHHHHHHHHHHHHHcCCEEEE----cCCCcEEEEc-CCC--CCEEEEEeeccccCCC
Confidence 357899999999999997 578999999999999999998875 4457899988 432 3899999999999953
Q ss_pred CCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCC
Q 018435 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (356)
Q Consensus 106 ~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (356)
.|| .+ ++|++||||++|||++++++|+|++.| +..++++|.|+++++||+|+. |...++.+. + ..
T Consensus 75 ------~p~--~~-~~g~iyGrG~~D~Kg~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~g~~-~~~~~l~~~-~-~~ 139 (348)
T PRK04443 75 ------IPV--RV-EDGVLWGRGSVDAKGPLAAFAAAAARL---EALVRARVSFVGAVEEEAPSS-GGARLVADR-E-RP 139 (348)
T ss_pred ------CCc--Ee-eCCeEEeecccccccHHHHHHHHHHHh---cccCCCCEEEEEEcccccCCh-hHHHHHHhc-c-CC
Confidence 366 45 899999999999999999999999998 346789999999999999874 555555543 3 45
Q ss_pred ceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHHHHHcchhhhHHHHHhcccccCCc
Q 018435 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV 265 (356)
Q Consensus 186 ~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 265 (356)
|++++.+ |++...++++++|..+++++++|+++||+.| ..||+..++++++.+.++... ..........
T Consensus 140 d~~iv~E-----pt~~~~i~~~~kG~~~~~l~~~G~~~Hss~~-g~NAi~~~~~~l~~l~~~~~~-----~~~~~~~~~~ 208 (348)
T PRK04443 140 DAVIIGE-----PSGWDGITLGYKGRLLVTYVATSESFHSAGP-EPNAAEDAIEWWLAVEAWFEA-----NDGRERVFDQ 208 (348)
T ss_pred CEEEEeC-----CCCccceeeecccEEEEEEEEEeCCCccCCC-CCCHHHHHHHHHHHHHHHHhc-----Cccccccccc
Confidence 7777664 5443368899999999999999999999987 239999999999998765320 0000001123
Q ss_pred eeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEeeccc
Q 018435 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVINSLS 334 (356)
Q Consensus 266 ~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 334 (356)
.+++++.+. . ..|+||++|++.+|+|++|.++.+++.++|++.+. ++++++....+|
T Consensus 209 ~~~~i~~i~--~------~~n~iP~~~~~~~d~R~~p~~~~~~i~~~i~~~~~----~~~~~~~~~~~~ 265 (348)
T PRK04443 209 VTPKLVDFD--S------SSDGLTVEAEMTVGLRLPPGLSPEEAREILDALLP----TGTVTFTGAVPA 265 (348)
T ss_pred cceeeeEEe--c------CCCCCCceEEEEEEEccCCCCCHHHHHHHHHHhCC----CcEEEEecCCCc
Confidence 567777777 2 67999999999999999999999999999998764 344554433333
|
|
| >PRK07318 dipeptidase PepV; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=309.17 Aligned_cols=282 Identities=19% Similarity=0.246 Sum_probs=208.9
Q ss_pred CCCChhHHHHHHHhhhcccCCCCC----------cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCc
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPN----------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPS 92 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~----------~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~ 92 (356)
++...++++++|++|++|||.++. .++.++++|+.++++++|++++.++ |+++.+.... +.++
T Consensus 9 ~~~~~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~~------n~~~~~~~~~-~~~~ 81 (466)
T PRK07318 9 VEKRKDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNVD------NYAGHIEYGE-GEEV 81 (466)
T ss_pred HHHhHHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEec------CccceEEECC-CCCE
Confidence 445668899999999999998643 2467899999999999999988643 4555543222 2478
Q ss_pred EEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCcccc
Q 018435 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDG 172 (356)
Q Consensus 93 il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G 172 (356)
|+|+||+||||++ .+|+++||++++ +||++||||++||||+++++++|++.|++.+..++++|.|+|++|||.|+ .|
T Consensus 82 l~l~gH~DvVp~~-~~W~~~Pf~~~~-~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~g~-~G 158 (466)
T PRK07318 82 LGILGHLDVVPAG-DGWDTDPYEPVI-KDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVRFIVGTDEESGW-KC 158 (466)
T ss_pred EEEEEecCCCCCC-CCCCCCCcceEE-ECCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEEEEEEcccccCc-hh
Confidence 9999999999986 579999999999 89999999999999999999999999999888888999999999999987 69
Q ss_pred HHHHhccccccCCceEEEEecCc----cCc----------------------------CCc-------------------
Q 018435 173 AEKFADSHVFNSLNVGIVLDEGL----AST----------------------------TED------------------- 201 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~g~----~~p----------------------------~~~------------------- 201 (356)
++++++++... ++++..|... .+| .+.
T Consensus 159 ~~~l~~~~~~~--~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~ 236 (466)
T PRK07318 159 MDYYFEHEEAP--DFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVLVSFKSGLRENMVPDSAEAVITGDDLDDLIA 236 (466)
T ss_pred HHHHHHhCCCC--CEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCceeEEEEcCccceecCcccEEEEecCCHHHHHH
Confidence 99999864221 2222222100 000 000
Q ss_pred ----ceeEEeeeeeE-----EEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhh--hHHHHHh------------
Q 018435 202 ----YRAFYAERCPW-----WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRAS--QFDLVKA------------ 257 (356)
Q Consensus 202 ----~~i~~~~~G~~-----~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~--~~~~~~~------------ 257 (356)
+.+..+++|.. |++|+++|+++|++.|+.| |||..+++++..+...... .++.+..
T Consensus 237 ~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
T PRK07318 237 AFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKLG 316 (466)
T ss_pred HHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccCC
Confidence 00112567765 7999999999999999999 9999999999988642110 0111100
Q ss_pred --cccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEE
Q 018435 258 --GLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVV 329 (356)
Q Consensus 258 --~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (356)
.........++|++.+++|. .. +|++.+|+|++|.++.+++.++|++.+. . .++++++.
T Consensus 317 ~~~~~~~~g~~t~nvg~i~gg~------~~-----~~~~~iDiR~~p~~~~~~v~~~i~~~~~-~-~~~~~~~~ 377 (466)
T PRK07318 317 IAYEDDVMGDLTMNVGVFSFDE------EK-----GGTLGLNFRYPVGTDFEKIKAKLEKLIG-V-TGVELSEH 377 (466)
T ss_pred CcccCCCccCeEEEeeEEEEec------Cc-----EEEEEEEEeCCCCCCHHHHHHHHHHHHH-h-cCeEEEEc
Confidence 00001124688898888864 21 7999999999999999999999987664 2 34555443
|
|
| >TIGR01891 amidohydrolases amidohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=298.88 Aligned_cols=272 Identities=17% Similarity=0.179 Sum_probs=218.3
Q ss_pred HHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCCCCCC
Q 018435 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWS 110 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~ 110 (356)
.+++++|++|||. +++|.++++||.++|+++|++++.. .....|+++++++..+ .|+|+|.||+||||+++ |.
T Consensus 2 ~~~~~~L~~ips~--s~~E~~~a~~l~~~l~~~g~~~~~~--~~~~~~vva~~~~~~~-~~~i~l~gH~DtVp~~~--~~ 74 (363)
T TIGR01891 2 TDIRRHLHEHPEL--SFEEFKTSSLIAEALESLGIEVRRG--VGGATGVVATIGGGKP-GPVVALRADMDALPIQE--QT 74 (363)
T ss_pred hHHHHHHhcCCCC--CCchHHHHHHHHHHHHHcCCceEec--CCCCcEEEEEEeCCCC-CCEEEEEeccCCCCccc--cc
Confidence 5789999999996 6799999999999999999998752 2356899999966443 48999999999999854 67
Q ss_pred CCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEE
Q 018435 111 HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIV 190 (356)
Q Consensus 111 ~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~ 190 (356)
.+||... ++|++||||+ ++++++++.|++.|++.+..++++|.|+|+++||.+ .|++++++++.++..+.+++
T Consensus 75 ~~pf~~~--~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~--~G~~~~~~~~~~~~~d~~i~ 147 (363)
T TIGR01891 75 DLPYKST--NPGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGG--GGATKMIEDGVLDDVDAILG 147 (363)
T ss_pred CCCcccC--CCCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCc--chHHHHHHCCCCCCcCEEEE
Confidence 7999974 6899999997 588899999999998876667899999999999986 49999998766666677887
Q ss_pred EecCccCcCCcc--eeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCcee
Q 018435 191 LDEGLASTTEDY--RAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVS 267 (356)
Q Consensus 191 ~~~g~~~p~~~~--~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 267 (356)
++.....+.+.. ....+++|..+++++++|+++|++.|+.+ ||+..+++++.++.++..... ......+
T Consensus 148 ~e~~~~~~~~~~~~~~~~~~~g~~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~--------~~~~~~~ 219 (363)
T TIGR01891 148 LHPDPSIPAGTVGLRPGTIMAAADKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNV--------DPSRPAV 219 (363)
T ss_pred ECCCCCCCCeEEEECCCcceeecceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccC--------CCCCCcE
Confidence 765322232221 22346689999999999999999999888 999999999999976532100 0112368
Q ss_pred eeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 268 VNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 268 v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
++++.++||. +.|+||++|++.+|+|++|.++.+++.++|++.+.. ...++++++..
T Consensus 220 ~~i~~i~gG~------~~nvvP~~~~~~~diR~~~~~~~e~~~~~i~~~~~~~~~~~~~~ve~~~ 278 (363)
T TIGR01891 220 VTVGIIEAGG------APNVIPDKASMSGTVRSLDPEVRDQIIDRIERIVEGAAAMYGAKVELNY 278 (363)
T ss_pred EEEEEEEcCC------CCcEECCeeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 9999999987 999999999999999999999999999999877652 23456666654
|
This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site. |
| >PLN02280 IAA-amino acid hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=302.40 Aligned_cols=271 Identities=15% Similarity=0.147 Sum_probs=216.4
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC-
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP- 106 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~- 106 (356)
+.+.++.+.++++|+. +++|.+++++|.++|+++|++++.. ....|+++++ |.+. .|+|+|.||||+||+.+
T Consensus 97 ~~l~~l~r~lh~~PEl--s~~E~~t~~~i~~~L~~~G~~~~~~---~~~~~vva~~-g~~~-~~~I~l~gh~DaVP~~e~ 169 (478)
T PLN02280 97 AWLKSVRRKIHENPEL--AFEEYKTSELVRSELDRMGIMYRYP---LAKTGIRAWI-GTGG-PPFVAVRADMDALPIQEA 169 (478)
T ss_pred HHHHHHHHHHhcCCCC--CCcHHHHHHHHHHHHHHCCCeEEec---CCCCEEEEEE-CCCC-CCEEEEEEecCCCcccCC
Confidence 4555555666677764 6899999999999999999998752 3567999998 5443 38999999999999975
Q ss_pred CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCc
Q 018435 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (356)
Q Consensus 107 ~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~ 186 (356)
.+|+++| + ++|++||||+ |++++++|.+++.|++.+..++++|.|+|+++||+| .|++++++++.+++.+
T Consensus 170 ~~w~~~p----~-~~G~~h~cGh---d~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g--~Ga~~li~~g~~~~~d 239 (478)
T PLN02280 170 VEWEHKS----K-VAGKMHACGH---DAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAG--NGAKRMIGDGALDDVE 239 (478)
T ss_pred CCCCCCC----C-CCCeEEeCCC---cHHHHHHHHHHHHHHhccccCCceEEEEeccccccc--chHHHHHHCCCCcCCC
Confidence 5799988 3 8999999985 679999999999999887778999999999999997 3999999988777777
Q ss_pred eEEEEecCccCcCCc--ceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccC
Q 018435 187 VGIVLDEGLASTTED--YRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263 (356)
Q Consensus 187 ~~~~~~~g~~~p~~~--~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 263 (356)
..+.++.+...|.+. .......+|..+++|+++|+++|++.|+.| ||+.++++++..++++.... .. ..
T Consensus 240 ~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~----~~----~~ 311 (478)
T PLN02280 240 AIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAVISGKKGRAGSPHHSVDLILAASAAVISLQGIVSRE----AN----PL 311 (478)
T ss_pred EEEEEecCCCCCCceeEecccccccceeEEEEEEECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcc----cC----CC
Confidence 777776643334321 111223459999999999999999999999 99999999999887653210 01 11
Q ss_pred CceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 264 ~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
...+++++.++||. +.|+||++|++.+|+|+.+.++.+++.++|++.+.. ...++++++.
T Consensus 312 ~~~tvnvg~I~GG~------~~NvIPd~~~l~~diR~~~~e~~e~l~~~I~~~~~~~a~~~g~~~~v~ 373 (478)
T PLN02280 312 DSQVVSVTTMDGGN------NLDMIPDTVVLGGTFRAFSNTSFYQLLKRIQEVIVEQAGVFRCSATVD 373 (478)
T ss_pred CCcEEEEEEEEccC------CCCEeCCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 34688999999998 999999999999999999999999999999977652 3456666554
|
|
| >PRK06156 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=304.47 Aligned_cols=281 Identities=19% Similarity=0.263 Sum_probs=204.7
Q ss_pred CChhHHHHHHHhhhcccCCCCC---cCh----hHHHHHHHHHHHHCCCceEEEeecCCCceE-E-EEecCCCCCCCcEEE
Q 018435 25 KSDDSIIERFRAYLQIDTSQPN---PDY----TNASKFILAQAEALSLESQTLEFAKNKPLI-L-LKWPGSNPQLPSILL 95 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~---~~e----~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv-~-~~~~g~~~~~~~il~ 95 (356)
++.++++++|++|++|||+++. +++ .++++||.++++++|++++. ..|+ + +.++|++ .|+|+|
T Consensus 43 ~~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~------~~~~v~~~~~~g~~--~~~l~l 114 (520)
T PRK06156 43 KYGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRN------VDNRVLEIGLGGSG--SDKVGI 114 (520)
T ss_pred hhHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEe------cCCeEEEEEecCCC--CCeEEE
Confidence 4567999999999999998642 122 46789999999999998753 2344 4 6776643 479999
Q ss_pred EeecccCCCCCCCCCC-----CCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCcc
Q 018435 96 NSHTDVVPSEPSKWSH-----HPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170 (356)
Q Consensus 96 ~aH~Dtvp~~~~~w~~-----~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 170 (356)
.|||||||++..+|.+ +||.+.+ +||++||||++|||++++++++|++.|.+.+..++++|.|+|+++||.|+
T Consensus 115 ~gH~DvVp~~~~~W~~~~~~~~Pf~~~~-~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~- 192 (520)
T PRK06156 115 LTHADVVPANPELWVLDGTRLDPFKVTL-VGDRLYGRGTEDDKGAIVTALYAMKAIKDSGLPLARRIELLVYTTEETDG- 192 (520)
T ss_pred EEecCccCCCCccCccCCccCCCCceEE-ECCEEEEcCcccchHHHHHHHHHHHHHHHcCCCCCceEEEEEecccccCc-
Confidence 9999999997778999 9999999 89999999999999999999999999999888888999999999999987
Q ss_pred ccHHHHhccccccCCceEEEEecCc----cCcCC---------------cce----------------------------
Q 018435 171 DGAEKFADSHVFNSLNVGIVLDEGL----ASTTE---------------DYR---------------------------- 203 (356)
Q Consensus 171 ~G~~~~~~~~~~~~~~~~~~~~~g~----~~p~~---------------~~~---------------------------- 203 (356)
.|++.++++.. ..++++++|... .+|+. ...
T Consensus 193 ~G~~~~~~~~~--~~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l~~~~gG~~~n~ip~~a~~~~~~~~~~~ 270 (520)
T PRK06156 193 DPLKYYLERYT--PPDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEIVAMTGGAFANQIPQTAVATLSGGDPAA 270 (520)
T ss_pred hhHHHHHHhcC--CCCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeEEEEEcCCcCCCCCCccEEEEecCCHHH
Confidence 59999987643 234444443210 01110 000
Q ss_pred -----------eEEeeeeeE---------EEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHc-chhhh----HHHHHh
Q 018435 204 -----------AFYAERCPW---------WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRR-FRASQ----FDLVKA 257 (356)
Q Consensus 204 -----------i~~~~~G~~---------~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~-~~~~~----~~~~~~ 257 (356)
...+++|.. |++|+++|+++|++.|+.| |||..+++++..+.+ +.... ...+..
T Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~~aa~ii~~L~~~l~~~~~~~~~~~i~~ 350 (520)
T PRK06156 271 LAAALQAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVTRLALFLQSLDGDLPHNHAADAARYIND 350 (520)
T ss_pred HHHHHHHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 011222433 8999999999999999998 999999999999876 21110 001110
Q ss_pred cc--------------cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CC
Q 018435 258 GL--------------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--AS 321 (356)
Q Consensus 258 ~~--------------~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~ 321 (356)
.. .......+++++.+.+| +++|++.+|+|++|.++.+++.++|++.+.. ..
T Consensus 351 ~~~~~~~g~~~g~~~~~~~~g~~t~~~~~I~gg------------~~~~~l~iDiR~~p~~~~eev~~~I~~~i~~~~~~ 418 (520)
T PRK06156 351 LVGLDYLGEKFGVAYKDDFMGPLTLSPTVVGQD------------DKGTEVTVNLRRPVGKTPELLKGEIADALAAWQAK 418 (520)
T ss_pred hhCCCCccCcCCccccCCCccCcEEeeeEEEEe------------CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 00 00011234555555543 2589999999999999999999999977652 23
Q ss_pred CCceEEEE
Q 018435 322 RNMTFEVV 329 (356)
Q Consensus 322 ~~~~~~~~ 329 (356)
.++++++.
T Consensus 419 ~gv~ve~~ 426 (520)
T PRK06156 419 HQVALDID 426 (520)
T ss_pred cCceEEEe
Confidence 56666654
|
|
| >TIGR01883 PepT-like peptidase T-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=291.52 Aligned_cols=264 Identities=21% Similarity=0.215 Sum_probs=213.7
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecC---CCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK---NKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~---~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
+++++|++|++|||. +++|.+++++|.++|+++|++++..+..+ +.+|+++.++|+++ .|+|+|.||+||||++
T Consensus 1 ~~~~~~~~l~~i~s~--s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~i~l~~H~D~V~~~ 77 (361)
T TIGR01883 1 RLKKYFLELIQIDSE--SGKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTVK-FDTIFFCGHMDTVPPG 77 (361)
T ss_pred ChHHHHHHHeecCCC--CCcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCCC-CCcEEEEeeccccCCC
Confidence 367899999999997 56899999999999999999987654332 37899999987643 4899999999999975
Q ss_pred CCCCCCCCCCeeeCCCCeEEecCc----ccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc
Q 018435 106 PSKWSHHPFGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (356)
Q Consensus 106 ~~~w~~~P~~~~~~~~g~~~GrG~----~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (356)
+ ||.+.+ ++|++||||+ +|||++++++|.+++.|++.+ .++++|.|+|+++||.|+ .|++.+.+..
T Consensus 78 ~------~~~~~~-~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~-~G~~~~~~~~- 147 (361)
T TIGR01883 78 A------GPEPVV-EDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEELGL-IGMRLFDESK- 147 (361)
T ss_pred C------CCCcee-cCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccCc-hhHhHhChhh-
Confidence 3 344556 8899999999 999999999999999998876 467899999999999986 6999887642
Q ss_pred ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccC-CCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcc
Q 018435 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (356)
Q Consensus 182 ~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~-~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~ 259 (356)
...+++++++.+. ....++.+++|..+++++++|+++|++ .|+.+ ||+..+++++..+.....
T Consensus 148 -~~~~~~~~~~~~~----~~~~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~~~~---------- 212 (361)
T TIGR01883 148 -ITAAYGYCLDAPG----EVGNIQLAAPTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLGRI---------- 212 (361)
T ss_pred -cCcceeEEEeCCC----CcceEEecCCceEEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhccccCC----------
Confidence 2245677776421 123588899999999999999999985 69999 999999999988754311
Q ss_pred cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 260 ~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
....+++++.++||. ..|+||++|++.+|+|..+..+.+.+.++|++.+.. ...+.++++.
T Consensus 213 ---~~~~~~~i~~i~gG~------~~nvVP~~~~~~~diR~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~ 275 (361)
T TIGR01883 213 ---DEETTANIGSFSGGV------NTNIVQDEQLIVAEARSLSFRKAEAQVQTMRERFEQAAEKYGATLEEE 275 (361)
T ss_pred ---CCccccccceeecCC------ccCccCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 123578888999998 999999999999999999988888888888876642 2345555543
|
This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene. |
| >PLN02693 IAA-amino acid hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=293.78 Aligned_cols=272 Identities=17% Similarity=0.154 Sum_probs=213.3
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
..+++++++++|+++|+. +++|.+++++|.++|+++|++++. ..+.+|+++.+ |+++ .|+|+|+|||||||+.
T Consensus 45 ~~~~~~~~r~~lh~~PE~--s~~E~~ta~~i~~~L~~~G~~~~~---~~~~~~via~~-g~~~-g~~i~l~~h~DaVp~~ 117 (437)
T PLN02693 45 VFDWMVRIRRKIHENPEL--GYEEFETSKLIRSELDLIGIKYRY---PVAITGIIGYI-GTGE-PPFVALRADMDALPIQ 117 (437)
T ss_pred hHHHHHHHHHHHHhCCCC--CCchHHHHHHHHHHHHHCCCeeEe---cCCCcEEEEEE-CCCC-CCEEEEEeecCCCcCC
Confidence 346789999999999997 789999999999999999998763 23578999998 4333 4899999999999997
Q ss_pred C-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccC
Q 018435 106 P-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (356)
Q Consensus 106 ~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (356)
+ .+|.++|| .+|++||||+ |+++++++.|++.|++.+..++++|.|+|+++||++ .|++.+++++.++.
T Consensus 118 e~~~~~~~p~-----~~G~~hacGh---kg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE~~--~Ga~~~i~~g~~~~ 187 (437)
T PLN02693 118 EAVEWEHKSK-----IPGKMHACGH---DGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEEGL--SGAKKMREEGALKN 187 (437)
T ss_pred CCCCCCCCCC-----CCCCEECCcc---hHHHHHHHHHHHHHHhCcccCCceEEEEEEEcccch--hhHHHHHHCCCCCC
Confidence 5 57999998 4689998874 999999999999999887667899999999999953 49999999876665
Q ss_pred CceEEEEecCccCcCCcceeE--EeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccc
Q 018435 185 LNVGIVLDEGLASTTEDYRAF--YAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKA 261 (356)
Q Consensus 185 ~~~~~~~~~g~~~p~~~~~i~--~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~ 261 (356)
.+.++..+.....+.+...+. ...+|..+++|+++|+++|++.|+.| ||+..+++++..++++.... ..
T Consensus 188 ~~~iig~h~~p~~~~g~~~~~~g~~~~G~~~~~i~v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~--------~~ 259 (437)
T PLN02693 188 VEAIFGIHLSPRTPFGKAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRE--------TD 259 (437)
T ss_pred CCEEEEEecCCCCCCeeEEeccCcccccceEEEEEEEcccccCCCCCCCcCHHHHHHHHHHHHHHHhccc--------CC
Confidence 555444443221122211111 11468889999999999999999999 99999999999998763210 00
Q ss_pred cCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 262 ~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
.....+++++.++||. +.|+||++|++++|+|+.+. .+.+.++|++++.. ..+++++++..
T Consensus 260 ~~~~~ti~vg~i~GG~------~~NvVPd~a~~~~diR~~~~--~~~i~~~i~~i~~~~a~~~g~~~e~~~ 322 (437)
T PLN02693 260 PLDSKVVTVSKVNGGN------AFNVIPDSITIGGTLRAFTG--FTQLQQRIKEIITKQAAVHRCNASVNL 322 (437)
T ss_pred CCCCcEEEEEEEEcCC------CCceECCeEEEEEEEecCCH--HHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 1234789999999998 99999999999999999986 46788888876652 34555555544
|
|
| >TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=280.11 Aligned_cols=235 Identities=24% Similarity=0.301 Sum_probs=192.3
Q ss_pred HHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCCCCCCC
Q 018435 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSH 111 (356)
Q Consensus 32 ~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~~ 111 (356)
++|++|++|||. +++|.++++||.++|+++|+++.. +..+|+++.. +. +.|+|+|+||+||||.
T Consensus 1 ~~l~~lv~i~s~--s~~e~~~~~~l~~~l~~~g~~~~~----~~~~~~~~~~-~~--~~~~i~~~~H~D~vp~------- 64 (336)
T TIGR01902 1 ELLKDLLEIYSP--SGKEANAAKFLEEISKDLGLKLII----DDAGNFILGK-GD--GHKKILLAGHVDTVPG------- 64 (336)
T ss_pred ChHHHHhcCCCC--CcchHHHHHHHHHHHHHcCCEEEE----CCCCcEEEEe-CC--CCceEEEEccccccCC-------
Confidence 368999999997 578999999999999999998742 4456888865 33 3489999999999984
Q ss_pred CCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEE
Q 018435 112 HPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVL 191 (356)
Q Consensus 112 ~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~ 191 (356)
+|...+ +||++||||++|||++++++|+|++.|++.+ .+|.|+++++||+|+ .|++++++... .+++++.
T Consensus 65 -~~~~~~-~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~-~G~~~~~~~~~---~~~~ii~ 134 (336)
T TIGR01902 65 -YIPVKI-EGGLLYGRGAVDAKGPLIAMIFATWLLNEKG----IKVIVSGLVDEESSS-KGAREVIDKNY---PFYVIVG 134 (336)
T ss_pred -CcccEE-eCCEEEEecccCCCcHHHHHHHHHHHHHhCC----CcEEEEEEeCcccCC-ccHHHHHhhcC---CCEEEEe
Confidence 355567 8999999999999999999999999998653 589999999999986 69999998642 2355655
Q ss_pred ecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHHHHHc-chhhhHHHHHhcccccCCceeeeE
Q 018435 192 DEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRR-FRASQFDLVKAGLKAEGEVVSVNM 270 (356)
Q Consensus 192 ~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~v~~ 270 (356)
+ |++...++++++|..+++++++|+++|++.+. +|++.+.++++.+.+ +... .. . ...++++
T Consensus 135 e-----pt~~~~i~~~~kG~~~~~v~~~G~~~Hss~~~--~ai~~~~~~~~~l~~~~~~~------~~---~-~~~~~~~ 197 (336)
T TIGR01902 135 E-----PSGAEGITLGYKGSLQLKIMCEGTPFHSSSAG--NAAELLIDYSKKIIEVYKQP------EN---Y-DKPSIVP 197 (336)
T ss_pred c-----CCCCcceeeeeeeEEEEEEEEEecCcccCCCh--hHHHHHHHHHHHHHHHhccc------cC---C-CCCccee
Confidence 3 55434689999999999999999999999765 588888888888762 2211 00 1 1246778
Q ss_pred eeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHH
Q 018435 271 AFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVE 315 (356)
Q Consensus 271 ~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~ 315 (356)
+.+++|. +.|+||++|++.+|+|++|.++.+++.++|++
T Consensus 198 ~~i~gg~------~~nvIP~~a~~~idiR~~p~~~~~~~~~~i~~ 236 (336)
T TIGR01902 198 TIIRFGE------SYNDTPAKLELHFDLRYPPNNKPEEAIKEITD 236 (336)
T ss_pred EEEEccC------CCcCCCceEEEEEEEeeCCCCCHHHHHHHHHh
Confidence 8888887 99999999999999999999999999998875
|
This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade. |
| >TIGR01887 dipeptidaselike dipeptidase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=289.11 Aligned_cols=269 Identities=18% Similarity=0.268 Sum_probs=198.2
Q ss_pred hHHHHHHHhhhcccCCC----CC------cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEe
Q 018435 28 DSIIERFRAYLQIDTSQ----PN------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s----~~------~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
++++++|++|++|||++ |. .++.++++|+.++|+++|++++.+.. ...++.+ +. +.|+|+|+|
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~----~~~~~~~-~~--~~~~l~l~g 74 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENVDN----YAGYAEY-GQ--GEEYLGILG 74 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEecC----ceEEEEe-CC--CCCeEEEEe
Confidence 57899999999999986 21 12478999999999999998875321 1112333 22 347999999
Q ss_pred ecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHh
Q 018435 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (356)
Q Consensus 98 H~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (356)
|+||||+++ .|+++||++++ ++|++||||++||||++++++.|++.|++.+..++++|.|+|+++||.|+ .|+++++
T Consensus 75 H~D~Vp~~~-~W~~~Pf~~~~-~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~g~~~~l 151 (447)
T TIGR01887 75 HLDVVPAGD-GWTSPPFEAEI-KDGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGW-ACIDYYF 151 (447)
T ss_pred ecCCCCCCC-CCcCCCCceEE-ECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCc-HhHHHHH
Confidence 999999974 79999999999 89999999999999999999999999999988888999999999999986 5999888
Q ss_pred ccccccC----Cce---EEEEecC----------------------ccCcCCcc----eeEEeee---------------
Q 018435 178 DSHVFNS----LNV---GIVLDEG----------------------LASTTEDY----RAFYAER--------------- 209 (356)
Q Consensus 178 ~~~~~~~----~~~---~~~~~~g----------------------~~~p~~~~----~i~~~~~--------------- 209 (356)
++..... .+. +++...| ..+|++.. .++++.+
T Consensus 152 ~~~~~~~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~ 231 (447)
T TIGR01887 152 EHEEAPDIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIA 231 (447)
T ss_pred HhcCCCCEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhh
Confidence 7532110 111 1111110 01233211 1345544
Q ss_pred ----eeE-----EEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHH--cchhhhHHHHHhcc-------------c-ccC
Q 018435 210 ----CPW-----WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVR--RFRASQFDLVKAGL-------------K-AEG 263 (356)
Q Consensus 210 ----G~~-----~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~--~~~~~~~~~~~~~~-------------~-~~~ 263 (356)
|.. +++|+++|+++|++.|+.| ||+..+++++..+. +......+.+...+ . ...
T Consensus 232 ~~~~g~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 311 (447)
T TIGR01887 232 KELEGSFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVS 311 (447)
T ss_pred cCcceEEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCc
Confidence 777 7999999999999999999 99999999999886 32221111111100 0 001
Q ss_pred CceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHh
Q 018435 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEW 317 (356)
Q Consensus 264 ~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~ 317 (356)
..+++|++.+++| .|++|++.+|+|++|.++.+++.+++.+.+
T Consensus 312 ~~~t~nvg~I~~g-----------~p~~~~~~~d~R~~p~~~~e~~~~~i~~~~ 354 (447)
T TIGR01887 312 GDLTMNVGVIDYE-----------NAEAGLIGLNVRYPVGNDPDTMLKNELAKE 354 (447)
T ss_pred CCcEEEEEEEEEe-----------CCcEEEEEEEEecCCCCCHHHHHHHHHHHh
Confidence 2467888888876 389999999999999999998888876443
|
This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific. |
| >PRK13381 peptidase T; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=286.95 Aligned_cols=257 Identities=21% Similarity=0.261 Sum_probs=201.2
Q ss_pred HHHHHHhhhcccCCCC--------CcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeeccc
Q 018435 30 IIERFRAYLQIDTSQP--------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (356)
Q Consensus 30 ~~~~l~~l~~i~s~s~--------~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dt 101 (356)
.++.|.+|++|||++. +.++.++++||.++|+++|++...+ ++.+||+++++|++++.|+|+|+||+||
T Consensus 3 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~---~~~~nvi~~~~g~~~~~~~lll~~H~D~ 79 (404)
T PRK13381 3 LTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVI---DEHAIVTAKLPGNTPGAPRIGFIAHLDT 79 (404)
T ss_pred HHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEE---cCCeEEEEEEecCCCCCCeEEEEEEecC
Confidence 6789999999999863 2467899999999999999964433 5789999999887655589999999999
Q ss_pred CCCCCC--------CCCCCCCCeee-----------------CCCCeEEecCc----ccchHHHHHHHHHHHHHHHcCCC
Q 018435 102 VPSEPS--------KWSHHPFGAHL-----------------DSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQ 152 (356)
Q Consensus 102 vp~~~~--------~w~~~P~~~~~-----------------~~~g~~~GrG~----~D~k~~~a~~l~a~~~l~~~~~~ 152 (356)
||+++. .|..+||.+.. .+++++||||+ +|||+|++++|.|++.|++++ .
T Consensus 80 Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~-~ 158 (404)
T PRK13381 80 VDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE-V 158 (404)
T ss_pred CCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcC-C
Confidence 998643 14444433221 14678999999 999999999999999998875 4
Q ss_pred CcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCC-CCCC
Q 018435 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK-LYDN 231 (356)
Q Consensus 153 ~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~-p~~g 231 (356)
++++|.|+|+++||+|+ .|+++++.+. +. .++++++|.+ .|+ .++++++|..+++|+++|+++|++. |..+
T Consensus 159 ~~g~i~~~~~~dEE~g~-~G~~~~~~~~-~~-~d~~~~~~~~--~~~---~i~~~~~G~~~~~v~v~Gk~aHa~~~p~~g 230 (404)
T PRK13381 159 EHGDIVVAFVPDEEIGL-RGAKALDLAR-FP-VDFAYTIDCC--ELG---EVVYENFNAASAEITITGVTAHPMSAKGVL 230 (404)
T ss_pred CCCCEEEEEEccccccc-ccHHHHHHhc-CC-CCEEEEecCC--Ccc---eEEEecCcceEEEEEEEeEecCCCCCcccC
Confidence 57899999999999986 6999987653 33 5777777654 343 5788899999999999999999874 7777
Q ss_pred -CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHH
Q 018435 232 -SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLE 310 (356)
Q Consensus 232 -nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~ 310 (356)
||+..+++++..+.++..... ......+++++.+.+ .|++|++.+|+|+.|.++.+.+.
T Consensus 231 ~NAI~~a~~~i~~l~~~~~~~~--------~~~~~~~i~v~~i~g------------~p~~~~~~~diR~~~~~~~e~i~ 290 (404)
T PRK13381 231 VNPILMANDFISHFPRQETPEH--------TEGREGYIWVNDLQG------------NVNKAKLKLIIRDFDLDGFEARK 290 (404)
T ss_pred cCHHHHHHHHHHhCCccCCCCC--------CCCcccEEEEEeEEe------------CcceEEEEEEEecCCHHHHHHHH
Confidence 999999999998876532100 001122455554442 28999999999999999999999
Q ss_pred HHHHHHhc
Q 018435 311 RRIVEEWA 318 (356)
Q Consensus 311 ~~i~~~~~ 318 (356)
++|++.+.
T Consensus 291 ~~i~~~~~ 298 (404)
T PRK13381 291 QFIEEVVA 298 (404)
T ss_pred HHHHHHHH
Confidence 99987665
|
|
| >COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=274.19 Aligned_cols=292 Identities=22% Similarity=0.219 Sum_probs=242.7
Q ss_pred CChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCC
Q 018435 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~ 104 (356)
...++++++.++|+++|+. +.+|.++++|+.++|+++|+++. +.......+++.++|.+++ |+|+|++.||.+|.
T Consensus 9 ~~~~~l~~~rr~lH~~PEL--~f~E~~Ta~~i~~~L~~~g~~~~--~~~~~~TGvva~~~~g~~g-~tIalRAD~DALPi 83 (392)
T COG1473 9 ELKDELIEWRRDLHEHPEL--GFEEYRTAAYIAEKLEELGFEVV--EVGGGKTGVVATLKGGKPG-PTIALRADMDALPI 83 (392)
T ss_pred hhhHHHHHHHHHHhhCCcc--chhHHHHHHHHHHHHHHcCCeeE--eccCCceEEEEEEcCCCCC-CEEEEEeecccCcc
Confidence 5568999999999999997 67999999999999999999832 2222357799999877654 69999999999999
Q ss_pred CCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccC
Q 018435 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (356)
Q Consensus 105 ~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (356)
.+. +.-||.++ .+|.+|+||+ .++++++|.+++.|+++...++++|+|+|+|+||+++ |++.+++++.+++
T Consensus 84 ~E~--t~~~~~S~--~~G~mHACGH---D~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~--Ga~~mi~~G~~~~ 154 (392)
T COG1473 84 QEE--TGLPFASK--NPGVMHACGH---DGHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGG--GAKAMIEDGVFDD 154 (392)
T ss_pred ccc--cCCCcccC--CCCCcccCCc---hHHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccc--cHHHHHhcCCccc
Confidence 652 45789986 6889999998 7999999999999998866789999999999999985 8999999998988
Q ss_pred -CceEEEEecCccCcCCcceeEEe--eeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhccc
Q 018435 185 -LNVGIVLDEGLASTTEDYRAFYA--ERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (356)
Q Consensus 185 -~~~~~~~~~g~~~p~~~~~i~~~--~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~ 260 (356)
+|.++.++.....|.+.+.+..| ..+...++++++|+++|++.|+.+ ||+.+++.++..++.+.....
T Consensus 155 ~vD~v~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~-------- 226 (392)
T COG1473 155 FVDAVFGLHPGPGLPVGTVALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNV-------- 226 (392)
T ss_pred cccEEEEecCCCCCCCceEEeecccceeecceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhccc--------
Confidence 99889888754325555555555 356778999999999999999999 999999999999987654311
Q ss_pred ccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc--cCCCCceEEEEeecccccCC
Q 018435 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA--PASRNMTFEVVINSLSLLHT 338 (356)
Q Consensus 261 ~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~ 338 (356)
.+.....++++.+++|+ +.||||+++++..++|.......+.+.++|++++. +..+++++++......+...
T Consensus 227 ~p~~~~vv~vg~~~aG~------a~NVIpd~A~l~gtvR~~~~~~~~~~~~~i~~ia~g~a~~~g~~~ei~~~~~~p~~~ 300 (392)
T COG1473 227 DPLDSAVVTVGKIEAGT------AANVIPDSAELEGTIRTFSDEVREKLEARIERIAKGIAAAYGAEAEIDYERGYPPVV 300 (392)
T ss_pred CCccCeEEEEEEecCCC------cCCcCCCeeEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecCCCCCcc
Confidence 11234789999999998 89999999999999999999999999999997766 36788999998766655555
Q ss_pred CccCce
Q 018435 339 NPKRML 344 (356)
Q Consensus 339 ~~~~~~ 344 (356)
|.+...
T Consensus 301 Nd~~~~ 306 (392)
T COG1473 301 NDPALT 306 (392)
T ss_pred CCHHHH
Confidence 554443
|
|
| >KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=263.75 Aligned_cols=315 Identities=19% Similarity=0.328 Sum_probs=238.0
Q ss_pred HhhhcCCCCChhHHHHHHHhhhcccCCCCC----cChhHHHHHHHHHHHHCCCceEEEeecCC----------CceEEEE
Q 018435 17 LIIFSSPAKSDDSIIERFRAYLQIDTSQPN----PDYTNASKFILAQAEALSLESQTLEFAKN----------KPLILLK 82 (356)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~l~~i~s~s~~----~~e~~~~~~l~~~l~~~g~~~~~~~~~~~----------~~nv~~~ 82 (356)
-..+..++...+++++.|++.++|+|+|.. ....++++|+.+.++++|..++..+.... .|-++++
T Consensus 5 ~~~fq~id~~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvvl~~ 84 (473)
T KOG2276|consen 5 TKVFQSIDLNKDEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVVLGV 84 (473)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhhhhc
Confidence 345667888999999999999999998642 24578999999999999988887665432 1233333
Q ss_pred ecCCCCCCCcEEEEeecccCCCC-CCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEE
Q 018435 83 WPGSNPQLPSILLNSHTDVVPSE-PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSF 161 (356)
Q Consensus 83 ~~g~~~~~~~il~~aH~Dtvp~~-~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~ 161 (356)
+ |++|+++++++++|||++|+. +++|..+||+.++ ++|++||||+.||||++++++++++++++.++.++.+|+|+|
T Consensus 85 ~-Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~-~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~~ 162 (473)
T KOG2276|consen 85 L-GSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTE-DDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFVF 162 (473)
T ss_pred c-cCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEE-ECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEEE
Confidence 3 999999999999999999997 6899999999999 999999999999999999999999999999999999999999
Q ss_pred eeccccCccccHHHHhcc---ccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEe--cCCccCCCCCC---CH
Q 018435 162 VPDEEIGGHDGAEKFADS---HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARG--APGHGAKLYDN---SA 233 (356)
Q Consensus 162 ~~~EE~g~~~G~~~~~~~---~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G--~~~Hs~~p~~g---na 233 (356)
...||.|| .|...+++. ..+.++|+ +++...+|..+..+.+.+|.||...+.+++.| +-.|||- .+| -|
T Consensus 163 EgmEEsgS-~~L~~l~~~~kD~~~~~vD~-vciSdnyWlg~kkPcltyGlRG~~yf~i~v~g~~~DlHSGv-fGG~~hE~ 239 (473)
T KOG2276|consen 163 EGMEESGS-EGLDELIEKEKDKFFKDVDF-VCISDNYWLGTKKPCLTYGLRGVIYFQIEVEGPSKDLHSGV-FGGVVHEA 239 (473)
T ss_pred EechhccC-ccHHHHHHHHhhhhhccCCE-EEeeCceeccCCCcccccccccceeEEEEEeeccccccccc-ccchhHHH
Confidence 99999998 588888765 24556775 55555667666778899999999999999999 6789985 444 34
Q ss_pred HHHHHHHHHHHHcchh----------------hhH----------HHHHh--c---c---------cccCCceeeeEeee
Q 018435 234 MENLFKSIESVRRFRA----------------SQF----------DLVKA--G---L---------KAEGEVVSVNMAFL 273 (356)
Q Consensus 234 i~~~~~~~~~i~~~~~----------------~~~----------~~~~~--~---~---------~~~~~~~~v~~~~i 273 (356)
+..+..++..+.+.+. .+. +.++. + + .....+++..+..|
T Consensus 240 m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~~~~k~~~l~~rWryPSLsihgI 319 (473)
T KOG2276|consen 240 MNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLPTDDKKRILMHRWRYPSLSIHGI 319 (473)
T ss_pred HHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhccccccccccCchHHHhhhhcccCccceecc
Confidence 4444444444332111 000 00000 0 0 01123567777777
Q ss_pred ecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc------CCCCceEEEEeecccccCC
Q 018435 274 KAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP------ASRNMTFEVVINSLSLLHT 338 (356)
Q Consensus 274 ~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~ 338 (356)
+|... +.++..+||..+.-++.+|+.|.++.+.+.+.+++.+.. ....+.+++.....||..+
T Consensus 320 eGaFs--~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~~nS~N~l~~~~~~~~~~Wv~d 388 (473)
T KOG2276|consen 320 EGAFS--GPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAELNSPNKLKVSMGHAGAPWVSD 388 (473)
T ss_pred cceee--CCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEeecCCCCceecC
Confidence 75431 222788999999999999999999999998888866651 3456666666666666544
|
|
| >TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=284.04 Aligned_cols=267 Identities=20% Similarity=0.269 Sum_probs=207.9
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCC--CCCCcEEEEeecccCCC
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN--PQLPSILLNSHTDVVPS 104 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~--~~~~~il~~aH~Dtvp~ 104 (356)
-++++++|++|++|||. ++++.++++|+.++|+++|+++++ +..+|+++.++|+. ++.|+|+|.|||||||+
T Consensus 3 ~~~~~~~l~~l~~i~s~--s~~e~~~~~~l~~~l~~~G~~~~~----~~~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~ 76 (477)
T TIGR01893 3 PSRVFKYFEEISKIPRP--SKNEKEVSNFIVNWAKKLGLEVKQ----DEVGNVLIRKPATPGYENHPPIVLQGHMDMVCE 76 (477)
T ss_pred HHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHHHHcCCeEEE----eCCCeEEEEEcCCCCCCCCCeEEEEeeccccCC
Confidence 36789999999999985 678999999999999999999876 45689999998653 23589999999999999
Q ss_pred CC----CCCCCCCCCeeeCCCCeEEecCcc---cchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHh
Q 018435 105 EP----SKWSHHPFGAHLDSQGNIFARGSQ---DMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (356)
Q Consensus 105 ~~----~~w~~~P~~~~~~~~g~~~GrG~~---D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (356)
++ .+|+.+||++.+ +||++||||++ |||+|++++|++++. .+. ++++|.++|+++||+|+ .|++++.
T Consensus 77 ~~~~~~~~w~~~p~~~~~-~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~~~-~~~~i~~~~~~dEE~g~-~Gs~~l~ 150 (477)
T TIGR01893 77 KNEDSLHDFEKDPIELII-DGDWLKARGTTLGADNGIGVAMGLAILED---NNL-KHPPLELLFTVDEETGM-DGALGLD 150 (477)
T ss_pred CCCCCCCCCCCCCeEEEE-eCCEEEECCccccccccHHHHHHHHHHhc---CCC-CCCCEEEEEEeccccCc-hhhhhcC
Confidence 75 379999999999 89999999995 999999999988764 333 46799999999999985 6999987
Q ss_pred ccccccCCceEEEEecCcc------CcCCc-ce----eEEe--eeeeEEEEEEEEe-cCCccCC-CCCC--CHHHHHHHH
Q 018435 178 DSHVFNSLNVGIVLDEGLA------STTED-YR----AFYA--ERCPWWLVIKARG-APGHGAK-LYDN--SAMENLFKS 240 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~g~~------~p~~~-~~----i~~~--~~G~~~~~v~~~G-~~~Hs~~-p~~g--nai~~~~~~ 240 (356)
... +. .+.+++.|.... .|++. .. +.+. ++|..+++|+++| +++|||. |+.+ ||+.+++++
T Consensus 151 ~~~-~~-~~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~ 228 (477)
T TIGR01893 151 ENW-LS-GKILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGRANANKLMARV 228 (477)
T ss_pred hhh-cC-CcEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHH
Confidence 642 22 344555542110 11111 11 1111 4789999999999 9999975 6555 999999999
Q ss_pred HHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc-
Q 018435 241 IESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP- 319 (356)
Q Consensus 241 ~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~- 319 (356)
+..+.+. ..++++.+.||. +.|+||++|++.+|+|.......+.+.+++.+.+..
T Consensus 229 i~~l~~~------------------~~~~v~~~~gg~------~~N~ip~~~~~~~diR~~~~~~l~~~~~~~~~~~~~~ 284 (477)
T TIGR01893 229 LNELKEN------------------LNFRLSDIKGGS------KRNAIPREAKALIAIDENDVKLLENLVKNFQSKFKSE 284 (477)
T ss_pred HHhhhhc------------------CCeEEEEEeCCC------cccccCCceEEEEEEChhHHHHHHHHHHHHHHHHHHH
Confidence 9887653 124577778887 999999999999999998888888888877755442
Q ss_pred ---CCCCceEEEEee
Q 018435 320 ---ASRNMTFEVVIN 331 (356)
Q Consensus 320 ---~~~~~~~~~~~~ 331 (356)
...++.+++...
T Consensus 285 ~~~~~~~~~~~~~~~ 299 (477)
T TIGR01893 285 YSELEPNITIEVSKR 299 (477)
T ss_pred hcccCCCeEEEEEEC
Confidence 346777776543
|
|
| >PRK15026 aminoacyl-histidine dipeptidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=280.29 Aligned_cols=261 Identities=16% Similarity=0.196 Sum_probs=207.9
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCC--CCCCcEEEEeecccCCC
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN--PQLPSILLNSHTDVVPS 104 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~--~~~~~il~~aH~Dtvp~ 104 (356)
..+++++|++|++|||. ++++.++++||.++++++|++++. +..+|+++.++++. .+.|.|+|.|||||||+
T Consensus 9 ~~~~~~~l~~Lv~ips~--S~~e~~~~~~l~~~~~~~G~~~~~----d~~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~ 82 (485)
T PRK15026 9 PQPLWDIFAKICSIPHP--SYHEEQLAEYIVGWAKEKGFHVER----DQVGNILIRKPATAGMENRKPVVLQAHLDMVPQ 82 (485)
T ss_pred HHHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHhCCCEEEE----EecCeEEEEEcCCCCCCCCCEEEEEeeecccCC
Confidence 47899999999999995 678999999999999999998876 45679999886532 23588999999999999
Q ss_pred CC----CCCCCCCCCeeeCCCCeEEecCc---ccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHh
Q 018435 105 EP----SKWSHHPFGAHLDSQGNIFARGS---QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (356)
Q Consensus 105 ~~----~~w~~~P~~~~~~~~g~~~GrG~---~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (356)
++ .+|+.+||++.+ ++|++||||+ +|||+|++++|.++ ++.+.. +++|.++|+++||+|+ .|++.+.
T Consensus 83 ~~~~~~~~w~~~P~~~~i-~~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~~~~-~~~i~~l~t~dEE~G~-~ga~~l~ 156 (485)
T PRK15026 83 KNNDTVHDFTKDPIQPYI-DGEWVKARGTTLGADNGIGMASALAVL---ADENVV-HGPLEVLLTMTEEAGM-DGAFGLQ 156 (485)
T ss_pred CCCCccccCCCCCceEEE-cCCEEEeCCccccCccHHHHHHHHHHH---HhCCCC-CCCEEEEEEcccccCc-HhHHHhh
Confidence 64 279999999998 8999999999 59999999988765 445543 7899999999999996 6999886
Q ss_pred ccccccCCceEEEEecCccCcCCcceeEEee------------------eeeEEEEEEEEe-cCCccC-CCCCC--CHHH
Q 018435 178 DSHVFNSLNVGIVLDEGLASTTEDYRAFYAE------------------RCPWWLVIKARG-APGHGA-KLYDN--SAME 235 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~------------------~G~~~~~v~~~G-~~~Hs~-~p~~g--nai~ 235 (356)
.. ....++++++|... ...++.++ +|..+++|+++| +++||+ .++.| ||+.
T Consensus 157 ~~--~~~~~~~i~~e~~~-----~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~ 229 (485)
T PRK15026 157 SN--WLQADILINTDSEE-----EGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANK 229 (485)
T ss_pred hc--cCCcCEEEEeCCCC-----CCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHHCCCCccHHH
Confidence 52 33467888887531 12343333 466789999999 999999 57766 9999
Q ss_pred HHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHH
Q 018435 236 NLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVE 315 (356)
Q Consensus 236 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~ 315 (356)
.+++++..+.+ .++++++.++||+ +.|+||++|++.+++|....+..+.+.+.+.+
T Consensus 230 ~la~~l~~~~~------------------~~~~~v~~i~GG~------~~NaIp~~a~a~i~~~~~~~~~~~~~~~~~~~ 285 (485)
T PRK15026 230 LLVRFLAGHAE------------------ELDLRLIDFNGGT------LRNAIPREAFATIAVAADKVDALKSLVNTYQE 285 (485)
T ss_pred HHHHHHHHhHh------------------hCCeEEEEEeCCC------ccCCCCCCcEEEEEEChhHHHHHHHHHHHHHH
Confidence 99999877431 1688999999999 99999999999999998876666666666654
Q ss_pred Hhc----cCCCCceEEEEe
Q 018435 316 EWA----PASRNMTFEVVI 330 (356)
Q Consensus 316 ~~~----~~~~~~~~~~~~ 330 (356)
.+. ....++.+++..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~ 304 (485)
T PRK15026 286 ILKNELAEKEKNLALLLDS 304 (485)
T ss_pred HHHHHhcccCCCeEEEEEE
Confidence 444 233456665544
|
|
| >PRK05469 peptidase T; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=278.54 Aligned_cols=259 Identities=22% Similarity=0.230 Sum_probs=198.5
Q ss_pred hHHHHHHHhhhcccCCCCC--------cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCC-CCCCcEEEEee
Q 018435 28 DSIIERFRAYLQIDTSQPN--------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN-PQLPSILLNSH 98 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~--------~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~-~~~~~il~~aH 98 (356)
+.+++.|++|++|||.|.. .++.+++++|.++|+++|+++..+ +..+||++.++|+. ++.|+|+|+||
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~---~~~~~v~~~~~g~~~~~~~~i~l~~H 78 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTL---DENGYVMATLPANVDKDVPTIGFIAH 78 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE---CCCeEEEEEecCCCCCCCCeEEEEEe
Confidence 5689999999999998622 347899999999999999963333 35779999998763 24589999999
Q ss_pred cccCCCCC----------------------CCCCCCCCCeee---CCCCeEEecCc----ccchHHHHHHHHHHHHHHHc
Q 018435 99 TDVVPSEP----------------------SKWSHHPFGAHL---DSQGNIFARGS----QDMKCVGMQYLEAIRRLKAS 149 (356)
Q Consensus 99 ~Dtvp~~~----------------------~~w~~~P~~~~~---~~~g~~~GrG~----~D~k~~~a~~l~a~~~l~~~ 149 (356)
|||||+.+ ..|.++||.+.+ -..+.+||||+ +|||++++++|+|++.|+++
T Consensus 79 ~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~ 158 (408)
T PRK05469 79 MDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAH 158 (408)
T ss_pred ccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhC
Confidence 99998753 224444444332 03378999998 99999999999999999988
Q ss_pred CCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCC-C
Q 018435 150 GFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK-L 228 (356)
Q Consensus 150 ~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~-p 228 (356)
+..++++|+|+|+++||+| .|+++++.+. + ..+++++++.+ +.+ .+.++.+|..+++|+++|+++|++. |
T Consensus 159 ~~~~~g~v~~~f~~dEE~g--~Ga~~~~~~~-~-~~~~~~~~~~~---~~g--~~~~~~~g~~~~~i~v~Gk~~Ha~~~p 229 (408)
T PRK05469 159 PEIKHGDIRVAFTPDEEIG--RGADKFDVEK-F-GADFAYTVDGG---PLG--ELEYENFNAASAKITIHGVNVHPGTAK 229 (408)
T ss_pred CCCCCCCEEEEEecccccC--CCHHHhhhhh-c-CCcEEEEecCC---Ccc--eEEeccCceeEEEEEEeeecCCCCCCc
Confidence 7667899999999999987 4998886432 2 24566777642 333 4667788999999999999999875 7
Q ss_pred CCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHH
Q 018435 229 YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAE 307 (356)
Q Consensus 229 ~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~ 307 (356)
+.+ ||+..+++++..++++.... .......+++++.++| .|++|++++|+|+.+.++.+
T Consensus 230 ~~g~nAi~~~~~~i~~l~~~~~~~--------~~~~~~~~i~~g~i~g------------gp~~~~i~~diR~~~~e~~e 289 (408)
T PRK05469 230 GKMVNALLLAADFHAMLPADETPE--------TTEGYEGFYHLTSIKG------------TVEEAELSYIIRDFDREGFE 289 (408)
T ss_pred ccccCHHHHHHHHHHhCCCCCCCC--------CCCCceEEEEEEEEEE------------ccceEEEEEEEecCCHHHHH
Confidence 888 99999999998877543210 0011112455555554 48999999999999999999
Q ss_pred HHHHHHHHHhc
Q 018435 308 SLERRIVEEWA 318 (356)
Q Consensus 308 ~~~~~i~~~~~ 318 (356)
.+.++|++.++
T Consensus 290 ~i~~~i~~~~~ 300 (408)
T PRK05469 290 ARKALMQEIAK 300 (408)
T ss_pred HHHHHHHHHHH
Confidence 99999997776
|
|
| >PRK12892 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=273.39 Aligned_cols=261 Identities=17% Similarity=0.143 Sum_probs=202.6
Q ss_pred CChhHHHHHHHhhhcccC-------CCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEe
Q 018435 25 KSDDSIIERFRAYLQIDT-------SQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s-------~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
...+++++.+++|++|+| .|.+++|.++++||.++|+++|++++. ++.+|++++++|.+++ |+|+|.|
T Consensus 7 ~~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~----~~~~nl~a~~~g~~~~-~~l~l~g 81 (412)
T PRK12892 7 IDGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRI----DGIGNVFGRLPGPGPG-PALLVGS 81 (412)
T ss_pred ccHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEE----cCCCcEEEEecCCCCC-CeEEEEc
Confidence 345789999999999998 444667899999999999999999876 5678999999887654 8999999
Q ss_pred ecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccC----ccccH
Q 018435 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGA 173 (356)
Q Consensus 98 H~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~ 173 (356)
|+||||+++ ..|+++|++++|+|++.|++.+..++++|.|++++|||.+ +..|+
T Consensus 82 H~DtVp~~g----------------------~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs 139 (412)
T PRK12892 82 HLDSQNLGG----------------------RYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGS 139 (412)
T ss_pred cccCCCCCC----------------------cccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccH
Confidence 999999742 2356789999999999999998888999999999999984 44699
Q ss_pred HHHhcccccc----------C-------------CceEEEE-------------ecCc-cCcCC-cceeEEeeeeeEEEE
Q 018435 174 EKFADSHVFN----------S-------------LNVGIVL-------------DEGL-ASTTE-DYRAFYAERCPWWLV 215 (356)
Q Consensus 174 ~~~~~~~~~~----------~-------------~~~~~~~-------------~~g~-~~p~~-~~~i~~~~~G~~~~~ 215 (356)
++++++.... . .|.+++. +.|. .+|.+ ...++++++|..+++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~~~~~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~~~~ 219 (412)
T PRK12892 140 RAYAGRLDPADALAARCRSDGVPLRDALAAAGLAGRPRPAADRARPKGYLEAHIEQGPVLEQAGLPVGVVTGIVGIWQYR 219 (412)
T ss_pred HHHHcCCCHHHHHhCccCCCCcCHHHHHHHcCCChhhcccccccCccEEEEEEeccCHhHhhCCCcEEEEEEeccceEEE
Confidence 9888531000 0 0111111 1110 01111 246899999999999
Q ss_pred EEEEecCCccCC-CC-CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-CCCCCCccccccCCe
Q 018435 216 IKARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSE 291 (356)
Q Consensus 216 v~~~G~~~Hs~~-p~-~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~~~~~~~~~nvip~~ 291 (356)
|+++|+++|++. |+ .+ ||+..+++++..+.++... ....++++++.+++| . +.|+||++
T Consensus 220 i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~~~-----------~~~~~~~~vg~i~gg~~------~~NvIP~~ 282 (412)
T PRK12892 220 ITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHFPR-----------VCGPAVVTVGRVALDPG------SPSIIPGR 282 (412)
T ss_pred EEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----------cCCCcEEEEEEEEecCC------CCeEECCe
Confidence 999999999975 54 56 9999999999998765321 112268999999976 5 89999999
Q ss_pred EEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 292 AEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 292 ~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
|++++|+|+.|.++.+++.++|++.+.. ..+++++++.
T Consensus 283 a~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~e~~ 322 (412)
T PRK12892 283 VEFSFDARHPSPPVLQRLVALLEALCREIARRRGCRVSVD 322 (412)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 9999999999999999999999977762 2356666654
|
|
| >PRK12893 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=270.92 Aligned_cols=260 Identities=19% Similarity=0.251 Sum_probs=202.1
Q ss_pred ChhHHHHHHHhhhcccCCCC--------CcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEe
Q 018435 26 SDDSIIERFRAYLQIDTSQP--------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~--------~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
..++++++|++|++|+|.++ +++|.++++||.++|+++|++++. +..+|++++++|.++..|+|+|.|
T Consensus 8 ~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~----~~~~n~~a~~~g~~~~~~~l~l~~ 83 (412)
T PRK12893 8 NGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSV----DAIGNLFGRRAGTDPDAPPVLIGS 83 (412)
T ss_pred CHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEE----cCCCcEEEEeCCCCCCCCEEEEEe
Confidence 35789999999999998632 345899999999999999999875 456799999988654358999999
Q ss_pred ecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccC----ccccH
Q 018435 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGA 173 (356)
Q Consensus 98 H~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~ 173 (356)
|+||||++ |..|+|+|++++|.|++.|++.+..++++|.|+|++|||.| ++.|+
T Consensus 84 H~DtVp~~----------------------g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~ 141 (412)
T PRK12893 84 HLDTQPTG----------------------GRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGS 141 (412)
T ss_pred cccCCCCC----------------------CcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccH
Confidence 99999974 23577999999999999999988888999999999999986 23588
Q ss_pred HHHhcccccc------C-------------------------CceEEEEec--Cc---cCcCCcceeEEeeeeeEEEEEE
Q 018435 174 EKFADSHVFN------S-------------------------LNVGIVLDE--GL---ASTTEDYRAFYAERCPWWLVIK 217 (356)
Q Consensus 174 ~~~~~~~~~~------~-------------------------~~~~~~~~~--g~---~~p~~~~~i~~~~~G~~~~~v~ 217 (356)
.++.+..... . .+..+.++. |. ..+ ....++++++|..+++|+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~i~~~~kG~~~~~i~ 220 (412)
T PRK12893 142 GVFTGALPLDDALARRDADGITLGEALARIGYRGTARVGRRAVDAYLELHIEQGPVLEAEG-LPIGVVTGIQGIRWLEVT 220 (412)
T ss_pred HHHhCcCChHHHHhccCCCCCCHHHHHHHcCCCcccccccCCccEEEEEEeccCHHHHHCC-CcEEEEeeecccEEEEEE
Confidence 8777542100 0 111111211 10 011 135788999999999999
Q ss_pred EEecCCccCC-CC-CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-CCCCCCccccccCCeEE
Q 018435 218 ARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSEAE 293 (356)
Q Consensus 218 ~~G~~~Hs~~-p~-~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~~~~~~~~~nvip~~~~ 293 (356)
++|+++|++. |+ .| ||+.++++++..|.++... .....+++++.+++| . +.|+||++|+
T Consensus 221 v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~~-----------~~~~~~~~vg~i~ggg~------~~NvVP~~a~ 283 (412)
T PRK12893 221 VEGQAAHAGTTPMAMRRDALVAAARIILAVERIAAA-----------LAPDGVATVGRLRVEPN------SRNVIPGKVV 283 (412)
T ss_pred EEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHHh-----------cCCCceEEEEEEEeeCC------CceEECCeeE
Confidence 9999999986 74 67 9999999999999776421 112368889999874 5 8999999999
Q ss_pred EEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 294 AGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 294 ~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
+++|+|++|.++.+++.++|++.+.. ...++++++.
T Consensus 284 ~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~v~~~ 321 (412)
T PRK12893 284 FTVDIRHPDDARLDAMEAALRAACAKIAAARGVQVTVE 321 (412)
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 99999999999999999999987752 2356666654
|
|
| >PRK12891 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=270.21 Aligned_cols=261 Identities=16% Similarity=0.201 Sum_probs=201.7
Q ss_pred hhHHHHHHHhhhcccCC--------CCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEee
Q 018435 27 DDSIIERFRAYLQIDTS--------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSH 98 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~--------s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH 98 (356)
..++++.+.+|-+|.+. +.+++|.++++||.++|+++|++++. +..+|+++.++|.+++.|+|+|+||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~----~~~gNl~a~~~g~~~~~~~l~~~~H 84 (414)
T PRK12891 9 GERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRV----DAMGNLFARRAGRDPDAAPVMTGSH 84 (414)
T ss_pred HHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEE----CCCCCEEEEecCCCCCCCeEEEEec
Confidence 35789999999988431 24567999999999999999999886 5678999999887655589999999
Q ss_pred cccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCc----cccHH
Q 018435 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----HDGAE 174 (356)
Q Consensus 99 ~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----~~G~~ 174 (356)
+||||++ |..|||+|++++|+|++.|++.+..++++|.|+++++||.|+ +.|++
T Consensus 85 ~DtVp~g----------------------g~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~ 142 (414)
T PRK12891 85 ADSQPTG----------------------GRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSG 142 (414)
T ss_pred ccCCCCC----------------------ccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccHH
Confidence 9999975 456999999999999999999999999999999999999862 24666
Q ss_pred HHh------------------------ccccccC-------CceEEEEec--Ccc-CcC-CcceeEEeeeeeEEEEEEEE
Q 018435 175 KFA------------------------DSHVFNS-------LNVGIVLDE--GLA-STT-EDYRAFYAERCPWWLVIKAR 219 (356)
Q Consensus 175 ~~~------------------------~~~~~~~-------~~~~~~~~~--g~~-~p~-~~~~i~~~~~G~~~~~v~~~ 219 (356)
.+. +.+...+ .+..+.++. |.. +++ ....++++++|..+++|+++
T Consensus 143 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~e~h~e~g~vle~~~~~~~iv~~~kG~~~~~v~v~ 222 (414)
T PRK12891 143 VFFGVYPLEYLLSRRDDTGRTLGEHLARIGYAGAEPVGGYPVHAAYELHIEQGAILERAGKTIGVVTAGQGQRWYEVTLT 222 (414)
T ss_pred HHhCCCCHHHHHhccCCCCCCHHHHHHHCCCCcccccccCCCCEEEEEEeCCCHHHHHCCCcEEEEeeccCcEEEEEEEE
Confidence 442 2111000 011122221 100 011 23579999999999999999
Q ss_pred ecCCccC-CCC-CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-CCCCCCccccccCCeEEEE
Q 018435 220 GAPGHGA-KLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSEAEAG 295 (356)
Q Consensus 220 G~~~Hs~-~p~-~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~~~~~~~~~nvip~~~~~~ 295 (356)
|+++|++ .|+ .+ ||+..+++++..++++... .....+++++.++|| . +.|+||++|++.
T Consensus 223 Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~~-----------~~~~~t~~vg~I~gG~~------~~NvVP~~~~~~ 285 (414)
T PRK12891 223 GVDAHAGTTPMAFRRDALVGAARMIAFLDALGRR-----------DAPDARATVGMIDARPN------SRNTVPGECFFT 285 (414)
T ss_pred eECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----------cCCCeEEEEEEEEeeCC------CcceECCeEEEE
Confidence 9999998 565 46 9999999999998765321 112368999999986 5 899999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 296 FDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 296 ~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
+|+|++|.++.+.+.++|++.+.. ..+++++++..
T Consensus 286 ~diR~~~~e~~e~v~~~i~~~~~~~~~~~~~~~~~~~ 322 (414)
T PRK12891 286 VEFRHPDDAVLDRLDAALRAELARIADETGLRADIEQ 322 (414)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 999999999999999999876652 24566666654
|
|
| >PRK09290 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=269.36 Aligned_cols=263 Identities=20% Similarity=0.246 Sum_probs=201.6
Q ss_pred CChhHHHHHHHhhhcc-cCC-------CCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEE
Q 018435 25 KSDDSIIERFRAYLQI-DTS-------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLN 96 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i-~s~-------s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~ 96 (356)
...+.+++.+++|++| +.. |.+++|.++++||.++|+++|++++. +..+|++++++|.++..|.|+|.
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~----~~~~nl~a~~~g~~~~~~~l~l~ 79 (413)
T PRK09290 4 IDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRV----DAVGNLFGRLEGRDPDAPAVLTG 79 (413)
T ss_pred cCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEE----cCCCcEEEEecCCCCCCCEEEEe
Confidence 3468899999999999 422 34667999999999999999999876 45689999997754335899999
Q ss_pred eecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccC----cccc
Q 018435 97 SHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDG 172 (356)
Q Consensus 97 aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G 172 (356)
||+||||++ |..|+|+|+|++++|++.|++.+..++++|.|++++|||.| +..|
T Consensus 80 gH~DtVp~~----------------------g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G 137 (413)
T PRK09290 80 SHLDTVPNG----------------------GRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLG 137 (413)
T ss_pred cCccCCCCC----------------------CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCcccc
Confidence 999999974 34588999999999999999988888899999999999984 2358
Q ss_pred HHHHhcccc----------------------ccCCceEEEE---------------ecC-ccCcCC-cceeEEeeeeeEE
Q 018435 173 AEKFADSHV----------------------FNSLNVGIVL---------------DEG-LASTTE-DYRAFYAERCPWW 213 (356)
Q Consensus 173 ~~~~~~~~~----------------------~~~~~~~~~~---------------~~g-~~~p~~-~~~i~~~~~G~~~ 213 (356)
++.+++... -.+.+++++. +.| ..+|++ ...++.+++|..+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ept~~~~~~~~~~~~~~~~e~~~~~~~i~~~~kG~~~ 217 (413)
T PRK09290 138 SRVFTGALTPEDALALRDADGVSFAEALAAIGYDGDEAVGAARARRDIKAFVELHIEQGPVLEAEGLPIGVVTGIVGQRR 217 (413)
T ss_pred HHHHHcccCHHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeccCHHHHHCCCcEEEEeeeeccEE
Confidence 887764310 0012222211 000 002222 2468999999999
Q ss_pred EEEEEEecCCccC-CC-CCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-CCCCCCccccccC
Q 018435 214 LVIKARGAPGHGA-KL-YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQP 289 (356)
Q Consensus 214 ~~v~~~G~~~Hs~-~p-~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~~~~~~~~~nvip 289 (356)
++|+++|+++|++ .| +.+ ||+..+++++..++++... .....+++++.+.+| . +.|+||
T Consensus 218 ~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~-----------~~~~~~~~~g~i~~g~~------~~NvIP 280 (413)
T PRK09290 218 YRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAA-----------HGPDLVATVGRLEVKPN------SVNVIP 280 (413)
T ss_pred EEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHh-----------cCCCeEEEEEEEEEcCC------CCeEEC
Confidence 9999999999988 58 467 9999999999998765321 012357888888864 5 899999
Q ss_pred CeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 290 SEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 290 ~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
++|++.+|+|+.|.++.+.+.++|++.+.. ...++++++..
T Consensus 281 ~~a~~~~diR~~p~e~~e~v~~~i~~~~~~~~~~~~~~~e~~~ 323 (413)
T PRK09290 281 GEVTFTLDIRHPDDAVLDALVAELRAAAEAIAARRGVEVEIEL 323 (413)
T ss_pred CEEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999999999999999999999999977762 23456666543
|
|
| >PRK08554 peptidase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=270.24 Aligned_cols=284 Identities=19% Similarity=0.208 Sum_probs=191.9
Q ss_pred HHHHHHHhhhcccCCCCCc----ChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCC
Q 018435 29 SIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~----~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~ 104 (356)
+++++|++|++|||+++.. .+.++++++.++|+++|++++.++.. +.+|+++.+ +. +.++|+|.||+||||+
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~-~~~~l~~~~-~~--~~~~l~l~gH~DtVp~ 77 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKD-GYYAVYGEI-GE--GKPKLLFMAHFDVVPV 77 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecC-CceEEEEEe-CC--CCCEEEEEeccccCCC
Confidence 5789999999999986322 36899999999999999998876543 457999987 43 2378999999999999
Q ss_pred CCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccc--cc
Q 018435 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VF 182 (356)
Q Consensus 105 ~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~~ 182 (356)
++..|+.+||++.+ +||++||||++|||++++++|+|++.|++.+ ++++|.|+|+++||+|+. ++.++++.. ..
T Consensus 78 ~~~~w~~~Pf~~~~-~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~~--~~~~i~l~~~~dEE~g~~-~~~~~~~~~~~~~ 153 (438)
T PRK08554 78 NPEEWNTEPFKLTV-KGDKAYGRGSADDKGNVASVMLALKELSKEP--LNGKVIFAFTGDEEIGGA-MAMHIAEKLREEG 153 (438)
T ss_pred CccccccCCceeEE-ECCEEEECCcccchHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccCcc-ccHHHHHHHHhcC
Confidence 76679999999999 8999999999999999999999999998753 578999999999999874 444665531 11
Q ss_pred cCCceEEEEecCccCcCCcceeEEeeeee-------------------EEEEEEEEecC-CccCCCCCC---CHHHHHHH
Q 018435 183 NSLNVGIVLDEGLASTTEDYRAFYAERCP-------------------WWLVIKARGAP-GHGAKLYDN---SAMENLFK 239 (356)
Q Consensus 183 ~~~~~~~~~~~g~~~p~~~~~i~~~~~G~-------------------~~~~v~~~G~~-~Hs~~p~~g---nai~~~~~ 239 (356)
...+++++.+. +....++.+++|. .++.+++.|.+ +|++.+..+ +++..+++
T Consensus 154 ~~~~~~iv~Ep-----t~~~~~~~~~kg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~ 228 (438)
T PRK08554 154 KLPKYMINADG-----IGMKPIIRRRKGFGVTIRVPSEKVKVKGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASH 228 (438)
T ss_pred CCCCEEEEeCC-----CCCcchhhcCCceEEEEEecccccccccceeeeeeceeecccCccccccccCCcCchHHHHHHH
Confidence 23567777753 3211122233332 23444455554 999987655 45666666
Q ss_pred HHHHHHcchhhhHHHHHhccc---ccCCceeeeEeeeecCCCC---C--------------------------CCccccc
Q 018435 240 SIESVRRFRASQFDLVKAGLK---AEGEVVSVNMAFLKAGTPS---P--------------------------NGFVMNL 287 (356)
Q Consensus 240 ~~~~i~~~~~~~~~~~~~~~~---~~~~~~~v~~~~i~~g~~~---~--------------------------~~~~~nv 287 (356)
++..+..+... +..++. ......++++....+|..- + ..-..|+
T Consensus 229 ~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~p~~g~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~n~ 304 (438)
T PRK08554 229 FLRESNVLAVS----LEGKFLKGNVVPGEVTLTYLEPGEGEEVEVDLGLTRLLKAIVPLVRAPIKAEKYSDYGVSITPNV 304 (438)
T ss_pred HHhhcCceEEE----EeeeeeecCcccceeEEEEecCCCCccccccccHHHHHHHHHHHHHHhhccccccccceeeccce
Confidence 66554422100 000000 0001122222222222100 0 0014555
Q ss_pred c---CCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEe
Q 018435 288 Q---PSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVI 330 (356)
Q Consensus 288 i---p~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 330 (356)
+ |++|++.+|+|+.+ .+.+++.++|++.+.....++++++..
T Consensus 305 ~~i~~g~a~~~~DiR~~~-~~~e~v~~~i~~~~~~~~~~~~~~~~~ 349 (438)
T PRK08554 305 YSFAEGKHVLKLDIRAMS-YSKEDIERTLKEVLEFNLPEAEVEIRT 349 (438)
T ss_pred EEecCCeEEEEEEEEecC-CCHHHHHHHHHHHhhccCCCceEEEEe
Confidence 5 99999999999987 688999999998776323566666653
|
|
| >TIGR01882 peptidase-T peptidase T | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=268.03 Aligned_cols=255 Identities=16% Similarity=0.187 Sum_probs=195.7
Q ss_pred hHHHHHHHhhhcccCCCC--------CcChhHHHHHHHHHHHHCCCc-eEEEeecCC-CceEEEEecCCCCC-CCcEEEE
Q 018435 28 DSIIERFRAYLQIDTSQP--------NPDYTNASKFILAQAEALSLE-SQTLEFAKN-KPLILLKWPGSNPQ-LPSILLN 96 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~--------~~~e~~~~~~l~~~l~~~g~~-~~~~~~~~~-~~nv~~~~~g~~~~-~~~il~~ 96 (356)
+++++.+.+|++|+|.|. +.++++++++|.++|+++|++ +.. |+ .+||++.++|+... .|+|+|.
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~----d~~~gnv~~~~~~~~~~~~~~i~~~ 78 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHY----DEKNGYVIATIPSNTDKDVPTIGFL 78 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEE----cCCceEEEEEecCCCCCCCCEEEEE
Confidence 578999999999999742 115568999999999999996 654 45 89999999886541 3899999
Q ss_pred eecccCCCCC-C-------------------------CCCCCCCCe------eeCCCCeEEecCcccchHHHHHHHHHHH
Q 018435 97 SHTDVVPSEP-S-------------------------KWSHHPFGA------HLDSQGNIFARGSQDMKCVGMQYLEAIR 144 (356)
Q Consensus 97 aH~Dtvp~~~-~-------------------------~w~~~P~~~------~~~~~g~~~GrG~~D~k~~~a~~l~a~~ 144 (356)
||||||+..+ . .|.++||.. ...+++.++| +|||+|+|++|.|++
T Consensus 79 aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G---~D~KgglAa~l~A~~ 155 (410)
T TIGR01882 79 AHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLG---ADDKAGIAEIMTAAD 155 (410)
T ss_pred EecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeec---ccCHHHHHHHHHHHH
Confidence 9999998522 1 688889885 3236779999 799999999999999
Q ss_pred HHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCc
Q 018435 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGH 224 (356)
Q Consensus 145 ~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~H 224 (356)
.|++++..++++|.|+|+++||+| .|++.+..+. + ..+++++++. +|.+ .+.+..+|..+++|+++|+++|
T Consensus 156 ~L~e~~~~~~g~I~~~ft~dEE~g--~Ga~~l~~~~-~-~~~~~~~i~g---ep~g--~i~~~~~g~~~~~I~v~Gk~aH 226 (410)
T TIGR01882 156 YLINHPEIKHGTIRVAFTPDEEIG--RGAHKFDVKD-F-NADFAYTVDG---GPLG--ELEYETFSAAAAKITIQGNNVH 226 (410)
T ss_pred HHHhCCCCCCCCEEEEEECcccCC--cCcchhhhhh-c-CccEEEEeCC---CCCC--eEEEccccceEEEEEEEEEecC
Confidence 999864345889999999999987 3888776532 2 3566777763 4554 3566667999999999999999
Q ss_pred cCCCC-CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCC
Q 018435 225 GAKLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPP 302 (356)
Q Consensus 225 s~~p~-~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~ 302 (356)
++.+. .+ ||+..+.+++..+...... ..+.-+.+.+++| ..|.+|++|++.+|+|+.+
T Consensus 227 a~~~~~~g~nAi~~a~~~~~~l~~~~~~-------------~~t~~~~g~i~~g-------~i~giPd~a~l~~diR~~~ 286 (410)
T TIGR01882 227 PGTAKGKMINAAQIAIDLHNLLPEDDRP-------------EYTEGREGFFHLL-------SIDGTVEEAKLHYIIRDFE 286 (410)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCcCCC-------------ccccceeEEEEEE-------eEEEecCEEEEEEEEecCC
Confidence 99764 56 9998888776555432110 0011112344554 5677999999999999999
Q ss_pred CCCHHHHHHHHHHHhc
Q 018435 303 TTDAESLERRIVEEWA 318 (356)
Q Consensus 303 ~~~~~~~~~~i~~~~~ 318 (356)
.++.+.+.++|++++.
T Consensus 287 ~e~~e~i~~~i~~i~~ 302 (410)
T TIGR01882 287 KENFQERKELMKRIVE 302 (410)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987775
|
This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides. |
| >PRK12890 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=261.18 Aligned_cols=261 Identities=18% Similarity=0.209 Sum_probs=199.3
Q ss_pred hhHHHHHHHhhhcccCC-------CCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeec
Q 018435 27 DDSIIERFRAYLQIDTS-------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHT 99 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~-------s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~ 99 (356)
..++++.+.+|.+||.. +.+++|.++++||.++|+++|++++. ...+|++++++|+.++.|+|+|.||+
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~----~~~~nlia~~~g~~~~~~~l~~~~H~ 83 (414)
T PRK12890 8 GERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRR----DAAGNLFGRLPGRDPDLPPLMTGSHL 83 (414)
T ss_pred HHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEE----cCCCcEEEEeCCCCCCCCEEEEeCcc
Confidence 46788999999988832 23678999999999999999999886 35679999998764445899999999
Q ss_pred ccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCc----cccHHH
Q 018435 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----HDGAEK 175 (356)
Q Consensus 100 Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----~~G~~~ 175 (356)
||||++ |..|||+|++++|++++.|++.+..++++|.|+++++||.|+ +.|++.
T Consensus 84 DtVp~~----------------------g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~ 141 (414)
T PRK12890 84 DTVPNG----------------------GRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRA 141 (414)
T ss_pred cCCCCC----------------------CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccHHH
Confidence 999974 457999999999999999999888889999999999999742 357766
Q ss_pred Hhccccc----------------------cCCceEEE--Eec-------------Ccc-C-cCCcceeEEeeeeeEEEEE
Q 018435 176 FADSHVF----------------------NSLNVGIV--LDE-------------GLA-S-TTEDYRAFYAERCPWWLVI 216 (356)
Q Consensus 176 ~~~~~~~----------------------~~~~~~~~--~~~-------------g~~-~-p~~~~~i~~~~~G~~~~~v 216 (356)
+.+.... ...+.+.+ .+. |.. . ......++.+++|..|++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ep~~~~~~~~~h~~~g~~~~~~~~~~~i~~~~kG~~~~~i 221 (414)
T PRK12890 142 LAGTLDVEAVLATRDDDGTTLAEALRRIGGDPDALPGALRPPGAVAAFLELHIEQGPVLEAEGLPIGVVTAIQGIRRQAV 221 (414)
T ss_pred HHcccChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEeeCcCHHHHhCCCceEEEEeecCcEEEEE
Confidence 6543110 00111111 100 000 0 0123568999999999999
Q ss_pred EEEecCCccCC-CC-CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-CCCCCCccccccCCeE
Q 018435 217 KARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSEA 292 (356)
Q Consensus 217 ~~~G~~~Hs~~-p~-~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~~~~~~~~~nvip~~~ 292 (356)
+++|+++|++. |+ .+ ||+..+++++..|.++... .....+++++.+++| . +.|+||++|
T Consensus 222 ~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~-----------~~~~~~~~~g~i~~gg~------~~NvIP~~a 284 (414)
T PRK12890 222 TVEGEANHAGTTPMDLRRDALVAAAELVTAMERRARA-----------LLHDLVATVGRLDVEPN------AINVVPGRV 284 (414)
T ss_pred EEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHHHh-----------cCCCeEEEEEEEEECCC------CceEECCeE
Confidence 99999999985 74 55 9999999999999875421 112367889999864 5 999999999
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 293 EAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 293 ~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
++++|+|+.|.++.+++.++|++.+.. ...++++++..
T Consensus 285 ~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~ 324 (414)
T PRK12890 285 VFTLDLRSPDDAVLEAAEAALLAELEAIAAARGVRIELER 324 (414)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 999999999999999999999876652 23456666543
|
|
| >TIGR03176 AllC allantoate amidohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=259.68 Aligned_cols=260 Identities=13% Similarity=0.144 Sum_probs=203.5
Q ss_pred hHHHHHHHhhhcccCC--------CCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeec
Q 018435 28 DSIIERFRAYLQIDTS--------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHT 99 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~--------s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~ 99 (356)
+++++.|.+|-+|.+. +.+..+.++++|+.+|++++|++++. |..+|++++++|++++.|+|++++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~----D~~gN~~~~~~g~~~~~~~i~~gsHl 78 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRF----DDVGNLYGRLVGTEFPEETILTGSHI 78 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEE----cCCCcEEEEecCCCCCCCeEEEeccc
Confidence 5677788888887331 23567899999999999999999876 78899999999998878999999999
Q ss_pred ccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccC----ccccHHH
Q 018435 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGAEK 175 (356)
Q Consensus 100 Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~~~ 175 (356)
||||.+ |..|++.|+++.|++++.|++++..++++|.++++++||.+ ++.|++.
T Consensus 79 Dtv~~g----------------------G~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~ 136 (406)
T TIGR03176 79 DTVVNG----------------------GNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKN 136 (406)
T ss_pred cCCCCC----------------------CccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHH
Confidence 999986 67899999999999999999999999999999999999975 1457777
Q ss_pred Hhcc---c---ccc--------------------------CCceEEEEec--CccC--cCCcceeEEeeeeeEEEEEEEE
Q 018435 176 FADS---H---VFN--------------------------SLNVGIVLDE--GLAS--TTEDYRAFYAERCPWWLVIKAR 219 (356)
Q Consensus 176 ~~~~---~---~~~--------------------------~~~~~~~~~~--g~~~--p~~~~~i~~~~~G~~~~~v~~~ 219 (356)
+... . ... .++..+-++. |... .+....++++.+|..+++|+++
T Consensus 137 ~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~ 216 (406)
T TIGR03176 137 IFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRKAPTVRDDIKAFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLK 216 (406)
T ss_pred HhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCcccccccccccceEEEEEECCCcchHHCCCeEEEEeecccceEEEEEEE
Confidence 7631 0 000 0111222222 2211 2235788999999999999999
Q ss_pred ecCCccCCCCC--C-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeec-CCCCCCCccccccCCeEEEE
Q 018435 220 GAPGHGAKLYD--N-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKA-GTPSPNGFVMNLQPSEAEAG 295 (356)
Q Consensus 220 G~~~Hs~~p~~--g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~-g~~~~~~~~~nvip~~~~~~ 295 (356)
|+++|++.|++ + ||+.++++++..+.++... .....+++++.+++ +. +.|+||++|++.
T Consensus 217 GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~-----------~~~~~~~tvG~I~~gg~------~~NvIP~~a~~~ 279 (406)
T TIGR03176 217 GEANHAGTTPMSYRRDTVYAFSRICTQSIERAKE-----------IGDPLVLTFGKVEPVPN------TVNVVPGETTFT 279 (406)
T ss_pred EECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----------cCCCcEEEEEEEEEcCC------ceEEECCeEEEE
Confidence 99999998654 3 9999999999988764321 12235888999984 55 899999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 296 FDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 296 ~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
+|+|+++.+..+.+.++|++.+.. ...++++++..
T Consensus 280 ~DiR~~~~~~~e~v~~~i~~~i~~ia~~~g~~~ei~~ 316 (406)
T TIGR03176 280 IDCRHTDAAVLRNFTKELENDMKAIADEMDITIDIDL 316 (406)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999999999999888888876652 34677777653
|
This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. |
| >TIGR01879 hydantase amidase, hydantoinase/carbamoylase family | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-31 Score=254.25 Aligned_cols=257 Identities=15% Similarity=0.187 Sum_probs=193.5
Q ss_pred HHHHHHhhhcccCC--------CCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeeccc
Q 018435 30 IIERFRAYLQIDTS--------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (356)
Q Consensus 30 ~~~~l~~l~~i~s~--------s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dt 101 (356)
+++.+..+-++.+. +++++|.++++||.++|+++|++++. +..+||+++++|+.++.|+|+|+||+||
T Consensus 3 ~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~~~~~----~~~~nl~a~~~g~~~~~~~l~~~~H~Dt 78 (401)
T TIGR01879 3 LWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGLEVRF----DEVGNLIGRKEGTEPPLEVVLSGSHIDT 78 (401)
T ss_pred HHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCCEEEE----ecCCcEEEEecCCCCCCCEEEEeccccc
Confidence 55666666666321 34678999999999999999999886 4568999999887654589999999999
Q ss_pred CCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccC----ccccHHHHh
Q 018435 102 VPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGAEKFA 177 (356)
Q Consensus 102 vp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~~~~~ 177 (356)
||.+ |..|++.|++++|++++.|++.+..++++|.|+++++||.+ ++.|++++.
T Consensus 79 V~~g----------------------g~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~ 136 (401)
T TIGR01879 79 VVNG----------------------GNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNMV 136 (401)
T ss_pred CCCC----------------------CccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHHh
Confidence 9974 33466789999999999999999999999999999999973 346888886
Q ss_pred cccc------cc--------------CCceEEEEe---------------cCcc--CcCCcceeEEeeeeeEEEEEEEEe
Q 018435 178 DSHV------FN--------------SLNVGIVLD---------------EGLA--STTEDYRAFYAERCPWWLVIKARG 220 (356)
Q Consensus 178 ~~~~------~~--------------~~~~~~~~~---------------~g~~--~p~~~~~i~~~~~G~~~~~v~~~G 220 (356)
.+.. .. ..+..++.. -|.. ..+..+.++.+++|..|++|+++|
T Consensus 137 ~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~e~Hieqg~~l~~~g~~~~v~~~~~G~~~~~i~v~G 216 (401)
T TIGR01879 137 GLANPEDVRNICDAKGISFAEAMKACGPDLPNQPLRPRGDIKAYVELHIEQGPVLESNGQPIGVVNAIAGQRWYKVTLNG 216 (401)
T ss_pred cccchhHHHhCcCCCCCCHHHHHHHcCCCcccccccccccccEEEEEEEcCCcChhhCCCeEEEEEEecCcEEEEEEEEE
Confidence 5310 00 001111000 0000 011125789999999999999999
Q ss_pred cCCccCCCC--CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-CCCCCCccccccCCeEEEEE
Q 018435 221 APGHGAKLY--DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSEAEAGF 296 (356)
Q Consensus 221 ~~~Hs~~p~--~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~~~~~~~~~nvip~~~~~~~ 296 (356)
+++|++.++ .+ ||+.++++++..++++... .....+.+++.+++| . +.|+||++|++.+
T Consensus 217 ~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~-----------~~~~~~~~vg~i~~g~~------~~NvVP~~a~~~~ 279 (401)
T TIGR01879 217 ESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKR-----------MGDPTVGTVGKVEARPN------GVNVIPGKVTFTL 279 (401)
T ss_pred ECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----------cCCCeEEEEEEEEecCC------ceEEECCEEEEEE
Confidence 999998654 46 9999999999999876422 012246788888875 4 7899999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 297 DIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 297 diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
|+|+.|.++.+++.++|++.+.. ...++++++.
T Consensus 280 diR~~p~~~~e~v~~~i~~~~~~~~~~~~~~~~~~ 314 (401)
T TIGR01879 280 DLRHTDAAVLRDFTQQLENDIKAISDERDIGIDIE 314 (401)
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHHHHHcCceEEEE
Confidence 99999999999999999877752 2345566554
|
Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546. |
| >PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=255.55 Aligned_cols=270 Identities=14% Similarity=0.137 Sum_probs=202.2
Q ss_pred hcCCCCChhHHHHHHHhhhcccCCC-----------CCcChhHHHHHHHHHHHHCCC-ceEEEeecCCCceEEEEecCCC
Q 018435 20 FSSPAKSDDSIIERFRAYLQIDTSQ-----------PNPDYTNASKFILAQAEALSL-ESQTLEFAKNKPLILLKWPGSN 87 (356)
Q Consensus 20 ~~~~~~~~~~~~~~l~~l~~i~s~s-----------~~~~e~~~~~~l~~~l~~~g~-~~~~~~~~~~~~nv~~~~~g~~ 87 (356)
...-....+++++.+.+|.+|+... .+..+.++++|+.+||+++|+ +++. |..+|++++++|.+
T Consensus 173 ~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~----D~~GNl~~~~~g~~ 248 (591)
T PRK13590 173 FGAEPVLGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHI----DAVGNVVGRYKGST 248 (591)
T ss_pred hCCCchHHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeE----CCCCCEEEEecCCC
Confidence 4455566789999999999986521 245678999999999999999 7765 77899999999987
Q ss_pred CCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 88 PQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 88 ~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
++.|+|++++||||||.+ |.+|+++|++++|++++.|++.++.++++|.|+++++||.
T Consensus 249 ~~~~~v~~gsHlDTV~~g----------------------G~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg 306 (591)
T PRK13590 249 PQAKRLLTGSHYDTVRNG----------------------GKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEG 306 (591)
T ss_pred CCCCeEEEecccccCCCC----------------------CCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCcc
Confidence 767899999999999875 5679999999999999999999998889999999999997
Q ss_pred C----ccccHHHHh--------cc----cc----------c------------cCCceEEEEec--Ccc--CcCCcceeE
Q 018435 168 G----GHDGAEKFA--------DS----HV----------F------------NSLNVGIVLDE--GLA--STTEDYRAF 205 (356)
Q Consensus 168 g----~~~G~~~~~--------~~----~~----------~------------~~~~~~~~~~~--g~~--~p~~~~~i~ 205 (356)
+ ++.|++.+. +. +. + ..+...+-++. |.. ..+....++
T Consensus 307 ~rF~~~~~GS~~~~G~~~~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~~~~~~a~~ElHiEqg~~Le~~~~~~gvV 386 (591)
T PRK13590 307 QRYKATFLGSGALIGDFDPAWLDQKDADGITMREAMQHAGLCIDDIPKLRRDPARYLGFVEVHIEQGPVLNELDLPLGIV 386 (591)
T ss_pred ccCCccccchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCceEEE
Confidence 4 235777532 10 00 0 00111122211 110 001246899
Q ss_pred EeeeeeEEEEEEEEecCCccCCCC-C-C-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeec-CCCCCC
Q 018435 206 YAERCPWWLVIKARGAPGHGAKLY-D-N-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKA-GTPSPN 281 (356)
Q Consensus 206 ~~~~G~~~~~v~~~G~~~Hs~~p~-~-g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~-g~~~~~ 281 (356)
++++|..+++|+++|+++|+|.++ . + ||+..+++++..+.++... ...++++++.+.. |.
T Consensus 387 ~~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~------------~~~~v~tVG~i~~~Gg---- 450 (591)
T PRK13590 387 TSINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ------------DGDSVGTVGMLEVPGG---- 450 (591)
T ss_pred eeeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc------------CCCcEEEEEEEEECCC----
Confidence 999999999999999999999754 3 4 9999999999888764211 1113456666652 33
Q ss_pred CccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEeecc
Q 018435 282 GFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVINSL 333 (356)
Q Consensus 282 ~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~ 333 (356)
+.|+||++|++++|+|+.+.++.+.+.++|++.+.. ...++++++.....
T Consensus 451 --~~NVIP~~a~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~~g~~vei~~~~~ 502 (591)
T PRK13590 451 --SINVVPGRCRFSLDIRAPTDAQRDAMVADVLAELEAICERRGLRYTLEETMR 502 (591)
T ss_pred --CCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEeec
Confidence 899999999999999999999999998888766552 34677777764333
|
|
| >PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=247.46 Aligned_cols=271 Identities=11% Similarity=0.088 Sum_probs=202.0
Q ss_pred hcCCCCChhHHHHHHHhhhcccC---C--------CCCcChhHHHHHHHHHHHHCCCc-eEEEeecCCCceEEEEecCCC
Q 018435 20 FSSPAKSDDSIIERFRAYLQIDT---S--------QPNPDYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSN 87 (356)
Q Consensus 20 ~~~~~~~~~~~~~~l~~l~~i~s---~--------s~~~~e~~~~~~l~~~l~~~g~~-~~~~~~~~~~~nv~~~~~g~~ 87 (356)
..+.+...+++++.+.+|.+|+. . +.+..+.++++|+.+||+++|++ ++. |..+||+++++|.+
T Consensus 173 ~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~----D~~gNv~~~~~g~~ 248 (591)
T PRK13799 173 FGYTPAIGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEI----DAVGNVVGRYKAAD 248 (591)
T ss_pred hCCChhHHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeE----CCCCCEEEEcCCCC
Confidence 44455667899999999999962 1 12456789999999999999998 886 78899999999987
Q ss_pred CCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 88 PQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 88 ~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
++.|+|++++|+||||.+ |.+|+-+|+++.|++++.|++.++.++++|.|+.+++||.
T Consensus 249 ~~~p~v~~gSHlDTV~~g----------------------G~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg 306 (591)
T PRK13799 249 DDAKTLITGSHYDTVRNG----------------------GKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFAEEEG 306 (591)
T ss_pred CCCCeEEEeccccccCCC----------------------CccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCc
Confidence 777999999999999864 4556679999999999999999999999999999999997
Q ss_pred C----ccccHHHHhc------------ccc-----ccC-----------------CceEEEEec--Ccc--CcCCcceeE
Q 018435 168 G----GHDGAEKFAD------------SHV-----FNS-----------------LNVGIVLDE--GLA--STTEDYRAF 205 (356)
Q Consensus 168 g----~~~G~~~~~~------------~~~-----~~~-----------------~~~~~~~~~--g~~--~p~~~~~i~ 205 (356)
. ++.|++.+.- .+. +.. ++..+-++- |.. ..+....++
T Consensus 307 ~rF~~~~~GS~~~~G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~~~~~~a~~ElHIEQgp~Le~~~~~igvV 386 (591)
T PRK13799 307 QRFKATFLGSGALIGDFNMELLDIKDADGISLREAIQHAGHCIDAIPKIARDPADVLGFIEVHIEQGPVLLELDIPLGIV 386 (591)
T ss_pred cCCCccccchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCcEEEE
Confidence 2 2457777751 011 000 011111111 100 001256899
Q ss_pred EeeeeeEEEEEEEEecCCccCCCC--CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCC
Q 018435 206 YAERCPWWLVIKARGAPGHGAKLY--DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNG 282 (356)
Q Consensus 206 ~~~~G~~~~~v~~~G~~~Hs~~p~--~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~ 282 (356)
++++|..+++|+++|+++|+|.++ .+ ||+.++++++..++++... . .....+++++.++++.
T Consensus 387 ~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~------~----~~~~~v~tVG~I~~~~----- 451 (591)
T PRK13799 387 TSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQ------D----QHASLVATMGQLNVPS----- 451 (591)
T ss_pred eeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHh------c----CCCCcEEEEEEEEecC-----
Confidence 999999999999999999999754 35 9999999999998765321 0 1122466777777431
Q ss_pred ccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEee
Q 018435 283 FVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVIN 331 (356)
Q Consensus 283 ~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~ 331 (356)
++.|+||++|++.+|+|+++.++.+.+.++|++.+.. ...++++++...
T Consensus 452 ga~NvIP~~a~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~~g~~~ei~~~ 502 (591)
T PRK13799 452 GSTNVIPGRCQFSLDIRAATDEIRDAAVADILAEIAAIAARRGIEYKAELA 502 (591)
T ss_pred CCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEE
Confidence 1899999999999999999999999887777755541 345666665543
|
|
| >COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=167.70 Aligned_cols=273 Identities=17% Similarity=0.147 Sum_probs=186.1
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceE------EEee---cCCCceEEEEecCCCCCCCcEEEEe
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQ------TLEF---AKNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~------~~~~---~~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
.+++.+++.+|++.||++.+.+|...+++|...|+++.+--+ .++. +.++.||+|-++|.. .+.+|++.|
T Consensus 7 ~e~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~~-~k~tvvl~g 85 (553)
T COG4187 7 SERVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGGT-SKRTVVLHG 85 (553)
T ss_pred HHHHHHHHHHHeeccccCCCcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecCC-CCceEEEee
Confidence 588999999999999998889999999999999998864211 1111 127889999999954 458999999
Q ss_pred ecccCCCCC-CCCCCCCCCee--------------------eCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCccc
Q 018435 98 HTDVVPSEP-SKWSHHPFGAH--------------------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRS 156 (356)
Q Consensus 98 H~Dtvp~~~-~~w~~~P~~~~--------------------~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~ 156 (356)
|+|||.+.+ .....-.|.+. .+.+++++|||+.|||+|+|+.|+.++.+.+.. ...+|
T Consensus 86 H~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~~-~~~GN 164 (553)
T COG4187 86 HFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAART-DRQGN 164 (553)
T ss_pred ccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhCC-CCCCc
Confidence 999998865 22222233330 136789999999999999999999999999874 66899
Q ss_pred EEEEEeeccccCccccHHHHhccc----cccCCce--EEEEecCcc-Cc-CCcceeEEeeeeeEEEEEEEEecCCccCCC
Q 018435 157 VYLSFVPDEEIGGHDGAEKFADSH----VFNSLNV--GIVLDEGLA-ST-TEDYRAFYAERCPWWLVIKARGAPGHGAKL 228 (356)
Q Consensus 157 i~~~~~~~EE~g~~~G~~~~~~~~----~~~~~~~--~~~~~~g~~-~p-~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p 228 (356)
|.|+.+|+||.-+ +|++..+... +..+.++ +|..|.-.. .+ ...-.+++|..|.+-.-.-|.|...|+|.|
T Consensus 165 lLf~a~pdEE~~s-~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~f~vvG~etHvG~~ 243 (553)
T COG4187 165 LLFMAVPDEEVES-RGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVGCETHVGYP 243 (553)
T ss_pred EEEEeccchhhhc-ccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEeccchhhcceeEEEeeccccCCc
Confidence 9999999999886 6888776531 1111222 333332111 11 112478999999998888999999999999
Q ss_pred CCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccc-cCCeEEEEEEEecCCCCCH
Q 018435 229 YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNL-QPSEAEAGFDIRVPPTTDA 306 (356)
Q Consensus 229 ~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nv-ip~~~~~~~diR~~~~~~~ 306 (356)
..| ||-..++.+..+++ ++..-.+.. ++.... +++-+-....+- +.|| .|.++.+.+++=+.. .+.
T Consensus 244 f~Gvnan~maSei~~~le-~N~~l~dr~-~Ge~t~-PPs~L~qkDlKe--------~Y~VqTp~~a~~~fN~l~h~-~ta 311 (553)
T COG4187 244 FEGVNANFMASEITRRLE-LNADLADRV-DGEITP-PPSCLEQKDLKE--------SYNVQTPERAWLYFNWLYHS-RTA 311 (553)
T ss_pred ccCCCHHHHHHHHHHHhh-cChhhhhhh-CCeeCC-CcHhhhhhhhhh--------hccccCcchhhhhheehhhc-CCH
Confidence 999 98877777777764 322111111 010000 001111112221 4555 677777777776553 455
Q ss_pred HHHHHHHH
Q 018435 307 ESLERRIV 314 (356)
Q Consensus 307 ~~~~~~i~ 314 (356)
.++.++++
T Consensus 312 ~~~~d~l~ 319 (553)
T COG4187 312 KELFDRLK 319 (553)
T ss_pred HHHHHHHH
Confidence 66666555
|
|
| >PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-18 Score=157.29 Aligned_cols=123 Identities=18% Similarity=0.219 Sum_probs=97.5
Q ss_pred CCcChhHHHHHHHHHHHHCCCceEEEeec--------C--------CCceEEEEecCCCCCCCcEEEEeecccCCCCCCC
Q 018435 45 PNPDYTNASKFILAQAEALSLESQTLEFA--------K--------NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSK 108 (356)
Q Consensus 45 ~~~~e~~~~~~l~~~l~~~g~~~~~~~~~--------~--------~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~ 108 (356)
.+++|.++++||.++|+++|++++..... . ...||++.++|+. .+.|++.||+|||++...
T Consensus 50 gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~--~~~Ill~AH~DTV~p~~~- 126 (346)
T PRK10199 50 GSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKA--PQQIIIMAHLDTYAPQSD- 126 (346)
T ss_pred CCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCC--CCeEEEEEEcCcCCCCCC-
Confidence 46789999999999999999988754321 1 1257999998854 378999999999975321
Q ss_pred CCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcc
Q 018435 109 WSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 109 w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
...++. .+-++++|+.|||+|++++|++++.|++.+ ++++|.|+++++||.|. .|+++++++
T Consensus 127 -~~~~~~-----~~g~~~~GA~DnasGvA~lLe~ar~l~~~~--~~~~I~fv~~~~EE~Gl-~GS~~~~~~ 188 (346)
T PRK10199 127 -ADVDAN-----LGGLTLQGMDDNAAGLGVMLELAERLKNVP--TEYGIRFVATSGEEEGK-LGAENLLKR 188 (346)
T ss_pred -CccccC-----CCCcccCCccccHHHHHHHHHHHHHHhhCC--CCCcEEEEEECCcccCc-HHHHHHHHh
Confidence 111222 223789999999999999999999998664 57899999999999995 799999986
|
|
| >PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-19 Score=152.79 Aligned_cols=85 Identities=38% Similarity=0.679 Sum_probs=78.4
Q ss_pred EEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccH
Q 018435 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (356)
Q Consensus 94 l~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (356)
+|++||||||. ..+|.++||++.+ ++|++||||+.|+|+++++++.+++.|++++..++++|.|+|+++||.|+..|+
T Consensus 1 ll~~H~Dtv~~-~~~w~~~pf~~~~-~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~ 78 (189)
T PF01546_consen 1 LLYAHMDTVPG-PEGWKHDPFELSI-EDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGA 78 (189)
T ss_dssp EEEEES-BCST-GGGSSSSTTSEEE-ETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHH
T ss_pred CccccccccCC-cCcCCCCCcccEE-ECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchh
Confidence 68999999994 6899999999999 999999999999999999999999999988889999999999999999974499
Q ss_pred HHHhccc
Q 018435 174 EKFADSH 180 (356)
Q Consensus 174 ~~~~~~~ 180 (356)
+.+++++
T Consensus 79 ~~l~~~~ 85 (189)
T PF01546_consen 79 KHLLEEG 85 (189)
T ss_dssp HHHHHHC
T ss_pred hhhhhhc
Confidence 9999873
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B .... |
| >TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=143.78 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=108.4
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCC--
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS-- 104 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~-- 104 (356)
.+.++++|++|+++|++ ++.|.++++++.++|+++|++++. ++.+|+++.++|+. +.|+|+|.||||+|..
T Consensus 2 ~~~~~~lLk~Lv~~~s~--SG~E~~V~~~l~~~l~~~g~ev~~----D~~Gnlia~~~g~~-~~~~v~l~aHmDevG~~V 74 (343)
T TIGR03106 2 TDYLTETLLALLAIPSP--TGFTDAVVRYVAERLEDLGIEYEL----TRRGAIRATLPGRE-ATPARAVVTHLDTLGAMV 74 (343)
T ss_pred hHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHHcCCeEEE----CCCeEEEEEECCCC-CCCeEEEEEeecccccee
Confidence 46689999999999996 689999999999999999998875 78999999987743 2479999999999910
Q ss_pred --------------CCC------------------------C-C------------CCCCCC---ee-------------
Q 018435 105 --------------EPS------------------------K-W------------SHHPFG---AH------------- 117 (356)
Q Consensus 105 --------------~~~------------------------~-w------------~~~P~~---~~------------- 117 (356)
++- + . ...+++ ..
T Consensus 75 ~~I~~~G~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~iDiG~~s~ee~~~ 154 (343)
T TIGR03106 75 RELKDNGRLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRVDARASCRADLVR 154 (343)
T ss_pred eEECCCCeEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEEECCcCCHHHHHH
Confidence 100 0 0 011222 00
Q ss_pred ----------------eCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCc
Q 018435 118 ----------------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG 169 (356)
Q Consensus 118 ----------------~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~ 169 (356)
...+++++||+ .|||+|+++++++++.|++.+..++.+|+++|+++||.|+
T Consensus 155 lGV~~Gd~v~~~~~~~~~~~~~i~gr~-~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG~ 221 (343)
T TIGR03106 155 LGISVGDFVAFDPQPEFLANGFIVSRH-LDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVGS 221 (343)
T ss_pred cCCCCCCEEEECCccEEecCCEEEEEe-cccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCc
Confidence 01679999997 8999999999999999998876778999999999999994
|
This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family. |
| >COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-14 Score=134.49 Aligned_cols=287 Identities=18% Similarity=0.111 Sum_probs=199.9
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCce-EEEeec-------CCCceEEEEecCCCCCCCcEEEEe
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLES-QTLEFA-------KNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~-~~~~~~-------~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
..+.+++.+.+|++||+. |..+++++.++.+|++.+|+.+ ..+... .+..-+.+.+++..+.-|.+.+.+
T Consensus 3 ~~~~l~~~F~~~~kI~~~--S~~e~~~~p~~~~~~k~~~~~v~dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~s 80 (414)
T COG2195 3 KMERLLDRFLELVKIPTQ--SKHEKAVAPSTVGQAKLLGLLVEDELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFIS 80 (414)
T ss_pred chHHHHHHHHHHeeCCCC--CCCccccccccHHHHHHcCchhhhhhccccccccccCCCCeeeEEeeccccccccccccc
Confidence 347899999999999996 6799999999999999999987 322211 122235666877665568899999
Q ss_pred ecccCCCC-----CCCC---------------------CCCCCCeeeCCCCeEEecCc----ccchHHHHHHHHHHHHHH
Q 018435 98 HTDVVPSE-----PSKW---------------------SHHPFGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLK 147 (356)
Q Consensus 98 H~Dtvp~~-----~~~w---------------------~~~P~~~~~~~~g~~~GrG~----~D~k~~~a~~l~a~~~l~ 147 (356)
|+||+|.. ..+| .+.|.....+.+..+.--|+ .|+|+|++.++.++..++
T Consensus 81 h~Dt~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD~kAGia~i~~al~~~~ 160 (414)
T COG2195 81 HHDTVPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGADDKAGIAEIMTALSVLR 160 (414)
T ss_pred cccccccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCcchhHHHHHHHHHHHHh
Confidence 99999521 1223 13444332212233333444 499999999999999999
Q ss_pred HcC-CCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccC
Q 018435 148 ASG-FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA 226 (356)
Q Consensus 148 ~~~-~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~ 226 (356)
+.. .-+.++|++.|+++||.|+ +|+..+.-. ++ ..++++.+|.| + ...|.+...+...+++++.|+..|++
T Consensus 161 ~~~~~i~h~~i~~g~s~~Ee~g~-rg~~~~~~a-~f-~a~~ay~iDGg---~--~g~i~~ea~~~~~~~~~~~g~~~h~~ 232 (414)
T COG2195 161 EKHPEIPHGGIRGGFSPDEEIGG-RGAANKDVA-RF-LADFAYTLDGG---P--VGEIPREAFNAAAVRATIVGPNVHPG 232 (414)
T ss_pred hcCccccccCeEEEecchHHhhh-hhhhhccHH-hh-hcceeEecCCC---c--cCeeeeeccchheeeeeeeccCcCcc
Confidence 652 3457999999999999996 688866653 33 35788999843 2 23788888899999999999999998
Q ss_pred CCCC-C-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCC
Q 018435 227 KLYD-N-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTT 304 (356)
Q Consensus 227 ~p~~-g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~ 304 (356)
.... . |++..+.+....+.... ....++...+..+.+. ..|.|.+++.....+|.....
T Consensus 233 ~a~~~~i~a~~~a~e~~~~~~~~~-------------~~e~t~~~~Gv~~~~~------~~~~V~~~s~~~~~iR~~d~~ 293 (414)
T COG2195 233 SAKGKMINALLLAAEFILELPLEE-------------VPELTEGPEGVYHLGD------STNSVEETSLNLAIIRDFDNL 293 (414)
T ss_pred chHHHHhhHHHhhhhhhhcCCccc-------------ccccccccceEEeccc------cccchhhhhhhhhhhhhcchh
Confidence 6433 3 66665555444332211 1123555667777776 889999999999999999887
Q ss_pred CHHHHHHHHHHHhcc------CCCCceEEEEeecccccCCCcc
Q 018435 305 DAESLERRIVEEWAP------ASRNMTFEVVINSLSLLHTNPK 341 (356)
Q Consensus 305 ~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 341 (356)
..+...+.+++.+.. ...++++++...+++|...+.+
T Consensus 294 ~~~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Yp~~~~~~~~ 336 (414)
T COG2195 294 LFRARKDSMKDVVEEMAASLGKLAGAELEVKDSYPGWKIKPDS 336 (414)
T ss_pred HHHHhHHHHHHHHHHHHHHhhhccceEEEEeccccCcCCCCCc
Confidence 777777777655541 2356666666655555444433
|
|
| >COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.4e-14 Score=130.20 Aligned_cols=152 Identities=20% Similarity=0.330 Sum_probs=119.1
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC-----
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV----- 102 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv----- 102 (356)
++++++|++|++++++ ++.|.++.+++.+.|++++.+++. |+.+|+++.++|.+ +.+.|++.||||++
T Consensus 2 ~~~~~~LkeL~~~~gp--sG~E~eVr~~~~~el~~~~~ev~~----D~lGnlia~~~g~~-g~~~imi~AHmDEiG~mV~ 74 (355)
T COG1363 2 EELLELLKELLEAPGP--SGYEEEVRDVLKEELEPLGDEVEV----DRLGNLIAKKGGKN-GPPKVMIAAHMDEIGFMVK 74 (355)
T ss_pred hHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHHHHhCCceEE----cCCCcEEEEecCCC-CCccEEEEeecceeeeeEE
Confidence 5689999999999995 789999999999999999998877 89999999998833 33669999999999
Q ss_pred -----------CCCCCCCC-------------------------------------CCC--CC-ee--------------
Q 018435 103 -----------PSEPSKWS-------------------------------------HHP--FG-AH-------------- 117 (356)
Q Consensus 103 -----------p~~~~~w~-------------------------------------~~P--~~-~~-------------- 117 (356)
+++ +|. ..| |. ..
T Consensus 75 ~I~~~G~Lr~~~IG--G~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~l 152 (355)
T COG1363 75 EIEDDGFLRFVPIG--GWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEEL 152 (355)
T ss_pred EECCCceEEEEEcC--CcChhhccCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhc
Confidence 111 010 000 00 00
Q ss_pred ---------------eCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccc
Q 018435 118 ---------------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF 182 (356)
Q Consensus 118 ---------------~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~ 182 (356)
...++++-+| +.|||.|++++|++++.| + +..++.+++++|+..||.| ++|++..... .
T Consensus 153 GI~vGd~v~~~~~~~~l~~~~i~sk-alDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVG-lrGA~~~a~~--i 226 (355)
T COG1363 153 GIRVGDFVVFDPRFRELANGRVVSK-ALDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVG-LRGAKTSAFR--I 226 (355)
T ss_pred CCCCCCEEEEcCceEEecCCcEEee-eccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhc-cchhhccccc--c
Confidence 1155888888 789999999999999999 4 6678899999999999999 4788876653 2
Q ss_pred cCCceEEEEecCc
Q 018435 183 NSLNVGIVLDEGL 195 (356)
Q Consensus 183 ~~~~~~~~~~~g~ 195 (356)
+.++++.+|...
T Consensus 227 -~pd~aiavd~~~ 238 (355)
T COG1363 227 -KPDIAIAVDVTP 238 (355)
T ss_pred -CCCEEEEEeccc
Confidence 357788888643
|
|
| >PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=113.86 Aligned_cols=104 Identities=22% Similarity=0.312 Sum_probs=88.3
Q ss_pred EeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCcc
Q 018435 206 YAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFV 284 (356)
Q Consensus 206 ~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~ 284 (356)
++++|..+++|+++|+++|++.|+.+ ||+..+++++..|.++...+..... .......+++++.+++|. .
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~~~---~~~~~~~~~~~~~i~gG~------~ 71 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFRPE---EFFPGPPTLNIGSIEGGT------A 71 (111)
T ss_dssp EEEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTSTHH---HCTCTSEEEEEEEEEEES------S
T ss_pred CcCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccccc---cccccccceeEeecccCC------c
Confidence 58899999999999999999999999 9999999999999876432110000 112355899999999998 9
Q ss_pred ccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 285 MNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 285 ~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
.|+||++|++.+++|++|.++.++++++|++.+.
T Consensus 72 ~n~ip~~a~~~~~~R~~p~~~~~~i~~~i~~~~~ 105 (111)
T PF07687_consen 72 PNVIPDEATLTVDIRYPPGEDLEEIKAEIEAAVE 105 (111)
T ss_dssp TTEESSEEEEEEEEEESTCHHHHHHHHHHHHHHH
T ss_pred CCEECCEEEEEEEEECCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998775
|
This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A .... |
| >TIGR03107 glu_aminopep glutamyl aminopeptidase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=130.48 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=115.1
Q ss_pred HHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC---------
Q 018435 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV--------- 102 (356)
Q Consensus 32 ~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv--------- 102 (356)
++|++|+++|++ |+.|.++++++.+++++++.+++. |+.+|+++.++|...+.|+|++.||||+|
T Consensus 2 ~~L~~L~~~~gp--SG~E~~v~~~i~~~l~~~~~~v~~----D~~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~ 75 (350)
T TIGR03107 2 NKIKEVTELQGT--SGFEHPIRDYLRQDITPLVDQVET----DGLGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKP 75 (350)
T ss_pred hHHHHHHhCCCC--CCCcHHHHHHHHHHHHhhCCEEEE----CCCCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECC
Confidence 579999999995 789999999999999999988776 88999999987641234799999999999
Q ss_pred -------CCCC----------------CC-------------CC--------CCCCC-ee--------------------
Q 018435 103 -------PSEP----------------SK-------------WS--------HHPFG-AH-------------------- 117 (356)
Q Consensus 103 -------p~~~----------------~~-------------w~--------~~P~~-~~-------------------- 117 (356)
|.++ .+ -. ..++. ..
T Consensus 76 ~G~l~~~~vGG~~~~~l~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~vGd 155 (350)
T TIGR03107 76 DGTFRVVELGGWNPLVVSSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRPGD 155 (350)
T ss_pred CceEEEEeCCCccccccCCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCCCC
Confidence 1110 00 00 00110 00
Q ss_pred ---------eC-CCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCce
Q 018435 118 ---------LD-SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNV 187 (356)
Q Consensus 118 ---------~~-~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~ 187 (356)
.. .++++.|| +.||+.|+++++++++.|++.. +..+++++|++.||.|. +|++..... . ++|+
T Consensus 156 ~v~~~~~~~~~~~~~~i~~k-alDdR~g~a~l~e~l~~l~~~~--~~~~l~~~~tvqEEvG~-rGA~~aa~~--i-~pD~ 228 (350)
T TIGR03107 156 VIVPQTETILTANGKNVISK-AWDNRYGVLMILELLESLKDQE--LPNTLIAGANVQEEVGL-RGAHVSTTK--F-NPDI 228 (350)
T ss_pred EEEECCCeEEEcCCCEEEEe-ccccHHHHHHHHHHHHHhhhcC--CCceEEEEEEChhhcCc-hhhhhHHhh--C-CCCE
Confidence 01 34678898 5799999999999999998763 57899999999999994 899965553 3 3578
Q ss_pred EEEEecCcc
Q 018435 188 GIVLDEGLA 196 (356)
Q Consensus 188 ~~~~~~g~~ 196 (356)
++++|.+..
T Consensus 229 aI~vDv~~~ 237 (350)
T TIGR03107 229 FFAVDCSPA 237 (350)
T ss_pred EEEEecCCc
Confidence 999997643
|
This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes |
| >PRK09961 exoaminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=128.14 Aligned_cols=148 Identities=20% Similarity=0.277 Sum_probs=116.0
Q ss_pred HHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC--------
Q 018435 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV-------- 102 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv-------- 102 (356)
+++|++|+++|++ ++.|.++++++.++++++|++++. |+.+|+++.+.|. +.|+|+|.||||+|
T Consensus 3 ~~~L~~L~~~~s~--sG~E~~v~~~i~~~l~~~~~~v~~----D~~Gnvi~~~~g~--~~~~v~l~aHmDevg~~V~~I~ 74 (344)
T PRK09961 3 LSLLKALSEADAI--ASSEQEVRQILLEEADRLQKEVRF----DGLGSVLIRLNES--TGPKVMICAHMDEVGFMVRSIS 74 (344)
T ss_pred HHHHHHHHhCCCC--CCChHHHHHHHHHHHHhhCCEEEE----CCCCCEEEEEcCC--CCCEEEEEeccceeceEEEEEC
Confidence 3679999999996 789999999999999999998775 7899999988663 23799999999999
Q ss_pred --------CCCCCCCCC----------------------------CCCCe-e----------------------------
Q 018435 103 --------PSEPSKWSH----------------------------HPFGA-H---------------------------- 117 (356)
Q Consensus 103 --------p~~~~~w~~----------------------------~P~~~-~---------------------------- 117 (356)
|.++ |.. .++.- .
T Consensus 75 ~~G~l~~~~vGG--~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~ 152 (344)
T PRK09961 75 REGAIDVLPVGN--VRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTF 152 (344)
T ss_pred CCceEEEEeCCC--ccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEccee
Confidence 1211 110 11110 0
Q ss_pred -eCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCc
Q 018435 118 -LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGL 195 (356)
Q Consensus 118 -~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~ 195 (356)
...++++.|| +.||+.|+++++++++.+++.+ +..+|+++|+..||.|. +|++..... + ++|+++++|.+.
T Consensus 153 ~~~~~~~i~gk-alDnR~g~~~lle~l~~l~~~~--~~~~v~~~~tvqEEvG~-rGa~~aa~~--i-~pd~~I~vDv~~ 224 (344)
T PRK09961 153 QVLPHQRVMGK-AFDDRLGCYLLVTLLRELHDAE--LPAEVWLVASSSEEVGL-RGGQTATRA--V-SPDVAIVLDTAC 224 (344)
T ss_pred EEecCCEEEEe-echhhHhHHHHHHHHHHhhhcC--CCceEEEEEEcccccch-HHHHHHHhc--c-CCCEEEEEeccC
Confidence 0156788898 6899999999999999998663 57899999999999995 799876653 3 368899999764
|
|
| >PRK09864 putative peptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9e-13 Score=124.05 Aligned_cols=145 Identities=18% Similarity=0.225 Sum_probs=113.7
Q ss_pred HHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC--------
Q 018435 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV-------- 102 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv-------- 102 (356)
+++|++|+++|++ |+.|.++++++.+++++++.+++. |..+|+++.. |. +.++|++.||||+|
T Consensus 3 ~~~L~~L~~~~g~--SG~E~~v~~~l~~~l~~~~dev~~----D~~GNli~~~-g~--~~~kvml~AHmDevG~mV~~I~ 73 (356)
T PRK09864 3 IELLQQLCEASAV--SGDEQEVRDILINTLEPCVNEITF----DGLGSFVARK-GN--KGPKVAVVGHMDEVGFMVTHID 73 (356)
T ss_pred HHHHHHHHcCCCC--CCchHHHHHHHHHHHHHhCCEEEE----CCCCCEEEEe-CC--CCcEEEEEecccccCEEEEEEC
Confidence 4679999999995 789999999999999999998876 8899999986 53 23699999999999
Q ss_pred --------CCCCCCCCC--------------C-CCCee------------------------------------------
Q 018435 103 --------PSEPSKWSH--------------H-PFGAH------------------------------------------ 117 (356)
Q Consensus 103 --------p~~~~~w~~--------------~-P~~~~------------------------------------------ 117 (356)
|.++ |.. . ++.+.
T Consensus 74 ~~G~l~~~~lGG--~~~~~l~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~v 151 (356)
T PRK09864 74 ESGFLRFTTIGG--WWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEI 151 (356)
T ss_pred CCCeEEEEeCCC--cCccccCCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCC
Confidence 1111 110 0 01111
Q ss_pred -----------eCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCc
Q 018435 118 -----------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (356)
Q Consensus 118 -----------~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~ 186 (356)
...++++.|| +.||+.|+++++++++.|++ +..+++++|+..||.| ++|++..... + +.|
T Consensus 152 GD~v~~~~~~~~l~~~~i~~k-alDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvG-lrGA~~aa~~--i-~PD 222 (356)
T PRK09864 152 GDFISPEANFACWGEDKVVGK-ALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVG-LRGAQTSAEH--I-KPD 222 (356)
T ss_pred CCEEEECCCcEEEcCCEEEEE-eCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcc-hHHHHHHHhc--C-CCC
Confidence 0156788898 67999999999999999965 5789999999999999 5899976663 3 357
Q ss_pred eEEEEecCc
Q 018435 187 VGIVLDEGL 195 (356)
Q Consensus 187 ~~~~~~~g~ 195 (356)
+++++|.+.
T Consensus 223 iaIavDvt~ 231 (356)
T PRK09864 223 VVIVLDTAV 231 (356)
T ss_pred EEEEEeccc
Confidence 899999764
|
|
| >KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=109.82 Aligned_cols=148 Identities=27% Similarity=0.321 Sum_probs=110.9
Q ss_pred ChhHHHHHHHhhhcc-cCCCCC-cChhHHHHHHHHHHHHCCCceEE----Eee-----------------cCCCceEEEE
Q 018435 26 SDDSIIERFRAYLQI-DTSQPN-PDYTNASKFILAQAEALSLESQT----LEF-----------------AKNKPLILLK 82 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i-~s~s~~-~~e~~~~~~l~~~l~~~g~~~~~----~~~-----------------~~~~~nv~~~ 82 (356)
...+.++.++++.++ |....+ .+|..+.+++.+.+.++.-..+. ++. .-+.-|++..
T Consensus 55 ~~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVk 134 (834)
T KOG2194|consen 55 SEARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVK 134 (834)
T ss_pred HHHHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEe
Confidence 457888889999988 443222 35668888888777765322111 111 0134689999
Q ss_pred ecCCCCCCC-cEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEE
Q 018435 83 WPGSNPQLP-SILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSF 161 (356)
Q Consensus 83 ~~g~~~~~~-~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~ 161 (356)
+.++..... .+++.||+|+||.++ |+.||..++|.+|+++|.+.+....++++|+|+|
T Consensus 135 i~~k~~~~~~~lLlnaHfDSvpt~~---------------------gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLf 193 (834)
T KOG2194|consen 135 ISPKNGNDKNALLLNAHFDSVPTGP---------------------GATDDGSGVASMLEALRVLSKSDKLLTHSVVFLF 193 (834)
T ss_pred cCCCCCCccceeeeeccccccCCCC---------------------CCCcchhHHHHHHHHHHHhhcCCCcccccEEEEe
Confidence 976554434 899999999999865 8999999999999999999988877899999999
Q ss_pred eeccccCccccHHHHhcccccc-CCceEEEEecCc
Q 018435 162 VPDEEIGGHDGAEKFADSHVFN-SLNVGIVLDEGL 195 (356)
Q Consensus 162 ~~~EE~g~~~G~~~~~~~~~~~-~~~~~~~~~~g~ 195 (356)
..+||.+ +.|+..++.++.+. .....+.++.++
T Consensus 194 NgaEE~~-L~gsH~FItQH~w~~~~ka~INLea~G 227 (834)
T KOG2194|consen 194 NGAEESG-LLGSHAFITQHPWSKNIKAVINLEAAG 227 (834)
T ss_pred cCcccch-hhhcccceecChhhhhhheEEeccccC
Confidence 9999998 57999999975554 456677776543
|
|
| >PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-09 Score=94.33 Aligned_cols=87 Identities=28% Similarity=0.363 Sum_probs=65.6
Q ss_pred cEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccc
Q 018435 92 SILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHD 171 (356)
Q Consensus 92 ~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~ 171 (356)
.|++.||+|+++.. .++ -+++|+.||.+|++++|++++.|++.+.+++++|+|+|+.+||.|. .
T Consensus 2 ~ivi~aH~Ds~~~~--------------~~~-~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl-~ 65 (179)
T PF04389_consen 2 YIVIGAHYDSVGGD--------------ADG-SWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGL-L 65 (179)
T ss_dssp EEEEEEE--BESCC--------------C-T-CSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTS-H
T ss_pred EEEEEeecCCCCCc--------------CCC-cccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCc-c
Confidence 68999999999821 111 3345999999999999999999999777789999999999999995 6
Q ss_pred cHHHHhcc--ccccCCceEEEEecC
Q 018435 172 GAEKFADS--HVFNSLNVGIVLDEG 194 (356)
Q Consensus 172 G~~~~~~~--~~~~~~~~~~~~~~g 194 (356)
|+++++++ ....+....+.+|..
T Consensus 66 GS~~~~~~~~~~~~~~~~~inlD~~ 90 (179)
T PF04389_consen 66 GSRAFVEHDHEELDNIAAVINLDMI 90 (179)
T ss_dssp HHHHHHHHHHCHHHHEEEEEEECSS
T ss_pred chHHHHHhhhcccccceeEEecccc
Confidence 99999973 222334566777653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A .... |
| >PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-08 Score=94.64 Aligned_cols=69 Identities=28% Similarity=0.372 Sum_probs=56.8
Q ss_pred CCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCc
Q 018435 120 SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGL 195 (356)
Q Consensus 120 ~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~ 195 (356)
.++++.|| +.||+.|+++++++++.|++.+. +.+++++|++.||.|. +|+.....+ . ++|+++++|...
T Consensus 124 ~~~~i~gk-alDdR~g~~~lle~l~~l~~~~~--~~~v~~v~tvqEEvG~-rGA~~aa~~--i-~PD~ai~vD~~~ 192 (292)
T PF05343_consen 124 GNGRIVGK-ALDDRAGCAVLLELLRELKEKEL--DVDVYFVFTVQEEVGL-RGAKTAAFR--I-KPDIAIAVDVTP 192 (292)
T ss_dssp TTTEEEET-THHHHHHHHHHHHHHHHHTTSS---SSEEEEEEESSCTTTS-HHHHHHHHH--H--CSEEEEEEEEE
T ss_pred CCCEEEEE-eCCchhHHHHHHHHHHHHhhcCC--CceEEEEEEeeeeecC-cceeecccc--c-CCCEEEEEeeec
Confidence 67789999 67999999999999999998754 5899999999999995 799977664 2 357888888653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A .... |
| >COG2234 Iap Predicted aminopeptidases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.6e-05 Score=78.09 Aligned_cols=52 Identities=29% Similarity=0.309 Sum_probs=46.9
Q ss_pred cCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc
Q 018435 127 RGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (356)
Q Consensus 127 rG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (356)
.|+.||..|++++|++++.|+... ++++|.|+++.+||.| +.|+.+++.+..
T Consensus 224 ~GA~DNasGva~llEiAr~l~~~~--p~~~v~f~~~~aEE~G-l~GS~~~~~~~~ 275 (435)
T COG2234 224 PGADDNASGVAALLELARVLKGNP--PKRTVRFVAFGAEESG-LLGSEAYVKRLS 275 (435)
T ss_pred CCcccccHHHHHHHHHHHHHhcCC--CCceEEEEEecchhhc-ccccHHHHhcCC
Confidence 399999999999999999999875 7899999999999999 579999998744
|
|
| >KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0002 Score=63.93 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=94.2
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecC-------CCceEEEEecCCCCCCCcEEEEeec
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK-------NKPLILLKWPGSNPQLPSILLNSHT 99 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~-------~~~nv~~~~~g~~~~~~~il~~aH~ 99 (356)
..+..+.|..+. +|.+-.+.+..++.+||.+.++.+|+.++.-...+ ...|+++++..+. ...+++.+|+
T Consensus 50 ~~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~A--~r~lVlachy 126 (338)
T KOG3946|consen 50 WNRLWENLLPIL-VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPNA--SRYLVLACHY 126 (338)
T ss_pred HHHHHHhhhhhh-ccccCCCCccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCCCc--chheeeeccc
Confidence 345555554443 23332367889999999999999999877533222 2458999985443 3688999999
Q ss_pred ccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcC----CCCcccEEEEEeecccc-------C
Q 018435 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG----FQPVRSVYLSFVPDEEI-------G 168 (356)
Q Consensus 100 Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~----~~~~~~i~~~~~~~EE~-------g 168 (356)
|+--..+ |. .+ |+.|...++|+++..++.|.+.- -...-.+.++|+-+||. .
T Consensus 127 dsk~~p~--~~------~v---------gatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~D 189 (338)
T KOG3946|consen 127 DSKIFPG--GM------FV---------GATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPED 189 (338)
T ss_pred ccccCCC--cc------eE---------eeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCcc
Confidence 9986532 11 12 88899999999999998876421 12456799999999993 3
Q ss_pred ccccHHHHhcc
Q 018435 169 GHDGAEKFADS 179 (356)
Q Consensus 169 ~~~G~~~~~~~ 179 (356)
|+.|++.+.++
T Consensus 190 SlYGsRhLA~~ 200 (338)
T KOG3946|consen 190 SLYGSRHLAAK 200 (338)
T ss_pred ccchHHHHHHH
Confidence 67899998875
|
|
| >KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.2e-05 Score=75.55 Aligned_cols=81 Identities=26% Similarity=0.338 Sum_probs=66.7
Q ss_pred CCceEEEEecCCCCCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHH---HHcCC
Q 018435 75 NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL---KASGF 151 (356)
Q Consensus 75 ~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l---~~~~~ 151 (356)
...|++++++|+......|++++|-|++-. |+.|..+|++.+++..+.+ +++++
T Consensus 337 ki~NIig~I~Gs~epD~~ViigahrDSw~~-----------------------Ga~dp~sGta~Ll~i~~~~~~~~k~gw 393 (702)
T KOG2195|consen 337 KIQNIIGKIEGSEEPDRYVIIGAHRDSWTF-----------------------GAIDPNSGTALLLEIARALSKLKKRGW 393 (702)
T ss_pred eeeeEEEEEecCcCCCeEEEEecccccccc-----------------------CCcCCCccHHHHHHHHHHHHHHHHcCC
Confidence 457999999995544579999999999854 5778888888887777654 57889
Q ss_pred CCcccEEEEEeeccccCccccHHHHhcc
Q 018435 152 QPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 152 ~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
+|.|+|+|+.+.+||.|. .|+-.+++.
T Consensus 394 rP~RtI~F~sWdAeEfGl-iGStE~~E~ 420 (702)
T KOG2195|consen 394 RPRRTILFASWDAEEFGL-LGSTEWAEE 420 (702)
T ss_pred CccceEEEEEccchhccc-cccHHHHHH
Confidence 999999999999999996 588888875
|
|
| >KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0013 Score=62.07 Aligned_cols=154 Identities=17% Similarity=0.196 Sum_probs=97.1
Q ss_pred HHHHHHHHHCCCceEEEeec------CCCceEEEEec-CC-----CCCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCC
Q 018435 54 KFILAQAEALSLESQTLEFA------KNKPLILLKWP-GS-----NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQ 121 (356)
Q Consensus 54 ~~l~~~l~~~g~~~~~~~~~------~~~~nv~~~~~-g~-----~~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~ 121 (356)
+.+.+-+...|+....-... .-.+|+.+++. |. +...|+|++.+|+||..+.+ |-. +
T Consensus 165 ~~ll~Tasangy~iv~sg~sp~a~~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap--~ls------v--- 233 (555)
T KOG2526|consen 165 QHLLQTASANGYSIVSSGQSPEAPPSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAP--GLS------V--- 233 (555)
T ss_pred HHHHhhhccCcEEEEecCCCcccCCCCccceEEeecccccccccccccCCeEEEEEeccccccCC--CCC------C---
Confidence 45555566667654421110 12468999887 33 23579999999999997753 111 1
Q ss_pred CeEEecCcccchHHHHHHHHHHHHHHHcC----CCCcccEEEEEeeccccCccccHHHHhcc--ccc-cCCceEEEEecC
Q 018435 122 GNIFARGSQDMKCVGMQYLEAIRRLKASG----FQPVRSVYLSFVPDEEIGGHDGAEKFADS--HVF-NSLNVGIVLDEG 194 (356)
Q Consensus 122 g~~~GrG~~D~k~~~a~~l~a~~~l~~~~----~~~~~~i~~~~~~~EE~g~~~G~~~~~~~--~~~-~~~~~~~~~~~g 194 (356)
|+--|.+|++++|+.++.+.+.- -..+.++.|+++.+--.. ..|.+.+++. ..+ +.+++++|+|.-
T Consensus 234 ------gADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~lN-yqGTkkWLe~dd~~lq~nVdfaiCLdti 306 (555)
T KOG2526|consen 234 ------GADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGKLN-YQGTKKWLEFDDADLQKNVDFAICLDTI 306 (555)
T ss_pred ------CCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCcccc-ccchhhhhhcchHHHHhcccEEEEhhhh
Confidence 77677889999999999887632 234788999998865443 4799998874 222 257888888631
Q ss_pred ccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHH
Q 018435 195 LASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVR 245 (356)
Q Consensus 195 ~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~ 245 (356)
+. +. .|---|.+.|+.. .-+....+.++.+.
T Consensus 307 g~----------~~----------s~l~mHvsKpP~dnt~i~qffr~l~svA 338 (555)
T KOG2526|consen 307 GR----------KT----------SGLFMHVSKPPSDNTVIAQFFRRLNSVA 338 (555)
T ss_pred cc----------cc----------CceEEEccCCCCcchHHHHHHHHhhhhc
Confidence 10 00 1222477887755 55556666665553
|
|
| >PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.016 Score=51.76 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=56.7
Q ss_pred CcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHc---CCCCcccEEEEEeecccc
Q 018435 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS---GFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 91 ~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~---~~~~~~~i~~~~~~~EE~ 167 (356)
|.|++.+.||+...-.+ .++|+.+.-.|++++|++++.|.+. .-.++++|.|.|+.+|-.
T Consensus 1 ~iIlv~armDs~s~F~~-----------------~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~ 63 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHD-----------------LSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESF 63 (234)
T ss_pred CEEEEEecccchhcccC-----------------CCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccc
Confidence 57999999999865321 0348888899999999999999765 234689999999999999
Q ss_pred CccccHHHHhcc
Q 018435 168 GGHDGAEKFADS 179 (356)
Q Consensus 168 g~~~G~~~~~~~ 179 (356)
|. -|++.++.+
T Consensus 64 dY-iGS~R~vyD 74 (234)
T PF05450_consen 64 DY-IGSSRFVYD 74 (234)
T ss_pred cc-cchHHHHHH
Confidence 96 588888754
|
Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane |
| >COG4882 Predicted aminopeptidase, Iap family [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.16 Score=47.55 Aligned_cols=73 Identities=22% Similarity=0.199 Sum_probs=53.7
Q ss_pred ceEEEEecCCCCCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCccc
Q 018435 77 PLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRS 156 (356)
Q Consensus 77 ~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~ 156 (356)
.|+++.-.+ ...++++.+|.|+... |..||-.|+++.++++..|...+. .
T Consensus 179 y~~Ia~~~~---en~vv~i~AH~DHW~~-----------------------G~tDN~lg~~~AV~~~~~lr~~~~----~ 228 (486)
T COG4882 179 YNVIAVDGG---ENGVVLIGAHLDHWYT-----------------------GFTDNILGVAQAVETAGRLRGRGL----A 228 (486)
T ss_pred EEEEEecCC---CCCceEEeechhhhhh-----------------------cccchhhhHHHHHHHHHHHhhcCc----c
Confidence 456554422 2369999999999976 466889999999999999988763 3
Q ss_pred EEEEEeeccccCcc--------ccHHHHhcc
Q 018435 157 VYLSFVPDEEIGGH--------DGAEKFADS 179 (356)
Q Consensus 157 i~~~~~~~EE~g~~--------~G~~~~~~~ 179 (356)
.-++.+++||.|+. .|++.+++.
T Consensus 229 ~~lv~FtAEE~g~p~~~sfyWa~GSr~~lk~ 259 (486)
T COG4882 229 AGLVVFTAEEHGMPGMASFYWAAGSRGLLKE 259 (486)
T ss_pred eeEEEEeccccCCCCCcceeecccchHHHhh
Confidence 56677778998742 366666664
|
|
| >cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.4 Score=43.71 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=77.1
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeec----CCCceEEEEecCCCCCCCcEEEEeecccCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~----~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~ 104 (356)
+-+.+.|+|++.|.- --.-...++++.+.+++.|++++.++.. -+.+.+++.=+|+.. .|.++..-+-..
T Consensus 155 ~~~~~aRdL~n~P~n--~~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~-~p~lv~l~Y~g~--- 228 (468)
T cd00433 155 EGVNLARDLVNTPAN--DLTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEE-PPRLIVLEYKGK--- 228 (468)
T ss_pred HHHHHHHHhhcCCcc--cCCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCC-CCEEEEEEECCC---
Confidence 344566777777763 2345788999999999999999987743 256666666666653 355554433221
Q ss_pred CCCCCCCCCCCeeeCCCCeEEecC---------ccc---chHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccc
Q 018435 105 EPSKWSHHPFGAHLDSQGNIFARG---------SQD---MKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166 (356)
Q Consensus 105 ~~~~w~~~P~~~~~~~~g~~~GrG---------~~D---~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 166 (356)
.. ...|.-. | ..|.-|=.| ..+ |++|.|+.+.+++++.+.+. +.+|+.+....|-
T Consensus 229 ~~---~~~~i~L-V-GKGiTFDsGG~slKp~~~M~~Mk~DM~GAAaVlga~~aia~l~~--~vnV~~i~~~~EN 295 (468)
T cd00433 229 GA---SKKPIAL-V-GKGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELKL--PVNVVGVLPLAEN 295 (468)
T ss_pred CC---CCCcEEE-E-cCceEecCCCccccCccChhhccccchhHHHHHHHHHHHHHcCC--CceEEEEEEeeec
Confidence 11 0112111 1 222222111 112 35889999999999998864 7889998888885
|
Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants. |
| >PRK05015 aminopeptidase B; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=2.3 Score=41.21 Aligned_cols=126 Identities=15% Similarity=0.118 Sum_probs=73.2
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHC---CCceEEEeec----CCCceEEEEecCCCCCCCcEEEEeeccc
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL---SLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDV 101 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~---g~~~~~~~~~----~~~~nv~~~~~g~~~~~~~il~~aH~Dt 101 (356)
+...+.|+|++.|+. --.-...++...++++++ +++++.++.. -+.+.+++.=+|+.. .|.++ .-+|
T Consensus 101 ~~~~~aRdLvn~P~n--~ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS~~-pP~lv-~L~Y-- 174 (424)
T PRK05015 101 KIIDWVRDTINAPAE--ELGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGSER-PPVLL-ALDY-- 174 (424)
T ss_pred HHHHHHHHHhcCCcc--cCCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccCCC-CCEEE-EEEe--
Confidence 456677888888874 223466677777777776 5777776643 255667766666653 34444 3333
Q ss_pred CCCCCCCCCCCCCC-eeeCCCCeEEecCc-------------ccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 102 VPSEPSKWSHHPFG-AHLDSQGNIFARGS-------------QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 102 vp~~~~~w~~~P~~-~~~~~~g~~~GrG~-------------~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
-|.+.. ..|.. .-+ .+|.-|=-|- +| ++|.|+.+.+++.+.+.+ ++.+|..++...|-.
T Consensus 175 ~~~g~~---~~~v~~aLV-GKGITFDSGG~sLKps~~M~~MK~D-MgGAAaV~ga~~~a~~~~--l~~nV~~il~~aENm 247 (424)
T PRK05015 175 NPTGDP---DAPVYACLV-GKGITFDSGGYSIKPSAGMDSMKSD-MGGAATVTGALALAITRG--LNKRVKLFLCCAENL 247 (424)
T ss_pred cCCCCC---CCCeeEEEe-cCceEecCCCccCCCCcCHHHhhcc-hhHHHHHHHHHHHHHhcC--CCceEEEEEEecccC
Confidence 333221 12221 122 2222222211 33 477788898988887775 468899999888864
|
|
| >PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=92.68 E-value=1.6 Score=40.68 Aligned_cols=121 Identities=15% Similarity=0.144 Sum_probs=74.6
Q ss_pred HHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecC----CC-------------c-eEEEEecCCC-CCCC
Q 018435 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK----NK-------------P-LILLKWPGSN-PQLP 91 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~----~~-------------~-nv~~~~~g~~-~~~~ 91 (356)
+.+.|+|++.|.. --.-...++++.+.++++|++++.++..+ +. | -++.++.|.. ...+
T Consensus 1 vn~aRdL~n~P~n--~~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~ 78 (311)
T PF00883_consen 1 VNLARDLVNTPPN--ILTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKK 78 (311)
T ss_dssp HHHHHHHHHS-TT--TSSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSE
T ss_pred ChHHHhhhCCChh--hcCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCc
Confidence 4577889998884 34568899999999999999988776421 11 2 3445565554 3345
Q ss_pred cEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccc
Q 018435 92 SILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166 (356)
Q Consensus 92 ~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 166 (356)
+|+|.|-==|...++ ..-.|-..-. +.-.|++|.|+.+.+++++.+.+. +.+|+.+....|-
T Consensus 79 ~i~LVGKGiTFDtGG--~~lKp~~~M~---------~Mk~DM~GAAaV~ga~~aia~lk~--~vnV~~~l~~~EN 140 (311)
T PF00883_consen 79 PIALVGKGITFDTGG--LSLKPSGGME---------GMKYDMGGAAAVLGAMRAIAKLKL--PVNVVAVLPLAEN 140 (311)
T ss_dssp EEEEEEEEEEEEE-T--TSSSCSTTGG---------GGGGGGHHHHHHHHHHHHHHHCT---SSEEEEEEEEEEE
T ss_pred cEEEEcceEEEecCC--ccCCCCcchh---------hcccCcchHHHHHHHHHHHHHcCC--CceEEEEEEcccc
Confidence 666665422222221 1111111100 223457889999999999998764 5889888888875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A .... |
| >PRK02256 putative aminopeptidase 1; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.36 Score=47.57 Aligned_cols=49 Identities=31% Similarity=0.426 Sum_probs=38.9
Q ss_pred CCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHH
Q 018435 120 SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (356)
Q Consensus 120 ~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (356)
+++.|.|+ ..||+.++.+++.+++.+. .+...++++++..||.|+ +|+.
T Consensus 250 ~~efI~s~-rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs-~ga~ 298 (462)
T PRK02256 250 DRSLIGAY-GQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGS-EGNT 298 (462)
T ss_pred ccceeecc-ccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCC-cchh
Confidence 56777777 5699999999999997664 245688999999999996 4544
|
|
| >PTZ00412 leucyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=5 Score=40.23 Aligned_cols=126 Identities=11% Similarity=0.062 Sum_probs=74.0
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceE-EEeec----CCCceEEEEecCCCCCCCcEEEEeecccCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQ-TLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVVP 103 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~-~~~~~----~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp 103 (356)
+.+.+.|+|++.|.. --.-...++...+.+.+.|++++ .++.. -+.+.+++.=+|+.. .|.++.. +|. +
T Consensus 213 ~~vn~ARdLvn~P~N--~ltP~~~Ae~a~~~~~~~g~~v~~Vl~~~~l~~~gmg~llaVgkGS~~-pPrli~L-~Y~--g 286 (569)
T PTZ00412 213 HCVNEARNLGNLRED--EGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRH-EPYLVVF-EYI--G 286 (569)
T ss_pred HHHHHHHHhccCChh--hcCHHHHHHHHHHHHhhcCCEEEEEEcHHHHHHCCCcceeeeeccCCC-CCEEEEE-EeC--C
Confidence 344567788887773 22346778888887888899886 55432 255666766666642 3444443 332 2
Q ss_pred CCCCCCCCCCCCeeeCCCCeEEecCc---------cc---chHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 104 SEPSKWSHHPFGAHLDSQGNIFARGS---------QD---MKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 104 ~~~~~w~~~P~~~~~~~~g~~~GrG~---------~D---~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
.... ..|.-. + ..|.-|=.|- .+ |++|.|+.+.+++++.+.+. +.+|+.++...|-.
T Consensus 287 ~~~~---~~~iaL-V-GKGITFDSGGisLKP~~~M~~MK~DMgGAAaVlga~~AiA~Lkl--pvnVv~iiplaENm 355 (569)
T PTZ00412 287 NPRS---SAATAL-V-GKGVTFDCGGLNIKPYGSMETMHSDMMGAATVMCTLKAIAKLQL--PVNVVAAVGLAENA 355 (569)
T ss_pred CCCC---CCcEEE-E-cCceEEcCCCCCCCCccChhhhhccchhHHHHHHHHHHHHHcCC--CeEEEEEEEhhhcC
Confidence 1110 122221 1 2222222211 11 35788899999999988754 67898888888753
|
|
| >TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase | Back alignment and domain information |
|---|
Probab=89.22 E-value=1.2 Score=44.34 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=42.8
Q ss_pred ceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEeeccc
Q 018435 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVINSLS 334 (356)
Q Consensus 265 ~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 334 (356)
..|+|++.++++ |+++.+++++|++++++.+++.++|++.+. ..++++++.....|
T Consensus 337 ~~t~n~g~i~~~------------~~~~~~~i~~R~~~~~~~~~i~~~i~~~~~--~~~~~v~~~~~~~p 392 (477)
T TIGR01893 337 ESSLNLGVVKTK------------ENKVIFTFLIRSSVESDKDYVTEKIESIAK--LAGARVEVSAGYPS 392 (477)
T ss_pred EeeeeEEEEEEc------------CCEEEEEEEeCCCCchhHHHHHHHHHHHhh--hcCeEEEEecCCCc
Confidence 357777777743 789999999999999999999999998775 34566665443333
|
|
| >PRK02813 putative aminopeptidase 2; Provisional | Back alignment and domain information |
|---|
Probab=85.94 E-value=0.88 Score=44.54 Aligned_cols=47 Identities=23% Similarity=0.159 Sum_probs=37.0
Q ss_pred CCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccc---cHH
Q 018435 121 QGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHD---GAE 174 (356)
Q Consensus 121 ~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~---G~~ 174 (356)
++.+.|+ ..||+.++.+++.++..+.+ ...++++++..||.|+ + |+.
T Consensus 225 ~e~i~s~-~lDnr~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVGs-~~~~GA~ 274 (428)
T PRK02813 225 GEFISSG-RLDNLSSCHAGLEALLAAAS-----DATNVLAAFDHEEVGS-ATKQGAD 274 (428)
T ss_pred CCEEEEe-cchhHHHHHHHHHHHHhcCC-----CCeEEEEEEecCccCC-CCCcccC
Confidence 4566665 67999999999999876642 5689999999999996 5 665
|
|
| >PRK00913 multifunctional aminopeptidase A; Provisional | Back alignment and domain information |
|---|
Probab=84.99 E-value=24 Score=35.10 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=75.7
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeec----CCCceEEEEecCCCCCCCcEEEEeecccCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~----~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~ 104 (356)
+.+.+.|+|++.|+. --.-...++++.+.++++|++++.++.. -+.+.+++.=+|+.. .|.++..-+- +.
T Consensus 172 ~~~~~aRdL~n~P~n--~~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~-~prli~l~Y~---g~ 245 (483)
T PRK00913 172 EGVNLARDLVNEPPN--ILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSAN-PPRLIVLEYK---GG 245 (483)
T ss_pred HHHHHHHHhhCCChh--hcCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCCC-CCeEEEEEEC---CC
Confidence 344566777777763 2345788999999999999999977643 256667776667653 3555444332 11
Q ss_pred CCCCCCCCCCCe-----eeCCCCeEEecC--c---ccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 105 EPSKWSHHPFGA-----HLDSQGNIFARG--S---QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 105 ~~~~w~~~P~~~-----~~~~~g~~~GrG--~---~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
. .|.-. +.|.+|.=.-++ . --|++|.|+.+.+++++.+.+ ++.+|+.+....|-.
T Consensus 246 ~------~~i~LVGKGITFDsGG~slKp~~~M~~MK~DM~GAAaVlga~~aia~lk--l~vnV~~v~~l~ENm 310 (483)
T PRK00913 246 K------KPIALVGKGLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALAELK--LPVNVVGVVAACENM 310 (483)
T ss_pred C------CeEEEEcCceEecCCCccCCCCcChhhcccccHhHHHHHHHHHHHHHcC--CCceEEEEEEeeccC
Confidence 0 11111 011122111111 1 123588899999999999886 478899998888853
|
|
| >PTZ00371 aspartyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=82.31 E-value=2.2 Score=42.21 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=34.5
Q ss_pred CCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEE-EeeccccCccccHH
Q 018435 121 QGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLS-FVPDEEIGGHDGAE 174 (356)
Q Consensus 121 ~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~-~~~~EE~g~~~G~~ 174 (356)
++.+.|+ ..||+.++.+++.|+..+.........++.++ ++..||.|+ +|+.
T Consensus 242 ~e~i~s~-rlDnr~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs-~ga~ 294 (465)
T PTZ00371 242 EEFISSP-RLDNLGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGS-SSSQ 294 (465)
T ss_pred CCeEEEe-cchhHHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCC-Ccch
Confidence 4566666 56999999999999987653200112345554 488999996 4544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 356 | ||||
| 1q7l_A | 198 | Zn-binding Domain Of The T347g Mutant Of Human Amin | 2e-53 | ||
| 3pfo_A | 433 | Crystal Structure Of A Putative Acetylornithine Dea | 3e-06 | ||
| 1vgy_A | 393 | Crystal Structure Of Succinyl Diaminopimelate Desuc | 3e-06 | ||
| 1lfw_A | 470 | Crystal Structure Of Pepv Length = 470 | 7e-06 | ||
| 3ct9_A | 356 | Crystal Structure Of A Putative Zinc Peptidase (Np_ | 3e-04 | ||
| 4h2k_A | 269 | Crystal Structure Of The Catalytic Domain Of Succin | 4e-04 | ||
| 3ic1_A | 377 | Crystal Structure Of Zinc-Bound Succinyl-Diaminopim | 4e-04 |
| >pdb|1Q7L|A Chain A, Zn-binding Domain Of The T347g Mutant Of Human Aminoacylase- I Length = 198 | Back alignment and structure |
|
| >pdb|3PFO|A Chain A, Crystal Structure Of A Putative Acetylornithine Deacetylase (Rpa2325) From Rhodopseudomonas Palustris Cga009 At 1.90 A Resolution Length = 433 | Back alignment and structure |
|
| >pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate Desuccinylase Length = 393 | Back alignment and structure |
|
| >pdb|1LFW|A Chain A, Crystal Structure Of Pepv Length = 470 | Back alignment and structure |
|
| >pdb|3CT9|A Chain A, Crystal Structure Of A Putative Zinc Peptidase (Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.31 A Resolution Length = 356 | Back alignment and structure |
|
| >pdb|4H2K|A Chain A, Crystal Structure Of The Catalytic Domain Of Succinyl-Diaminopimelate Desuccinylase From Haemophilus Influenzae Length = 269 | Back alignment and structure |
|
| >pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate Desuccinylase From Haemophilus Influenzae Length = 377 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 356 | |||
| 1q7l_A | 198 | Aminoacylase-1; catalysis, enzyme dimerization, si | 8e-85 | |
| 1lfw_A | 470 | PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac | 4e-31 | |
| 3pfo_A | 433 | Putative acetylornithine deacetylase; metal bindin | 1e-30 | |
| 1cg2_A | 393 | Carboxypeptidase G2; metallocarboxypeptidase, hydr | 3e-29 | |
| 2rb7_A | 364 | Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat | 2e-23 | |
| 3ct9_A | 356 | Acetylornithine deacetylase; NP_812461.1, A putati | 4e-22 | |
| 2f7v_A | 369 | Aectylcitrulline deacetylase; alpha/beta, hydrolas | 7e-20 | |
| 3khx_A | 492 | Putative dipeptidase sacol1801; DAPE, metallopepti | 1e-19 | |
| 3rza_A | 396 | Tripeptidase; phosphorylase/hydrolase-like, struct | 1e-16 | |
| 3tx8_A | 369 | Succinyl-diaminopimelate desuccinylase; peptidase, | 2e-16 | |
| 3gb0_A | 373 | Peptidase T; NP_980509.1, aminopeptidase PEPT, pep | 4e-14 | |
| 3isz_A | 377 | Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b | 1e-13 | |
| 2pok_A | 481 | Peptidase, M20/M25/M40 family; M20 family peptidas | 2e-13 | |
| 3pfe_A | 472 | Succinyl-diaminopimelate desuccinylase; metal bind | 2e-12 | |
| 1vgy_A | 393 | Succinyl-diaminopimelate desuccinylase; structural | 3e-12 | |
| 3ife_A | 434 | Peptidase T; metallopeptidase, aminopeptidase, hyd | 1e-10 | |
| 1fno_A | 417 | Peptidase T; metallo peptidase, protease, hydrolas | 2e-10 | |
| 3t68_A | 268 | Succinyl-diaminopimelate desuccinylase; DAPE, csgi | 2e-09 | |
| 3dlj_A | 485 | Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti | 1e-08 | |
| 2zog_A | 479 | Cytosolic non-specific dipeptidase; metallopeptida | 2e-08 | |
| 1rtq_A | 299 | Bacterial leucyl aminopeptidase; bimetallic, zinc, | 8e-08 | |
| 1tkj_A | 284 | Aminopeptidase, SGAP; double-zinc metalloproteinas | 2e-04 |
| >1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Length = 198 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 8e-85
Identities = 97/196 (49%), Positives = 126/196 (64%)
Query: 21 SSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLIL 80
S + + + FR YL+I T QP PDY A F A L L Q +E A + +
Sbjct: 3 SKGPEEEHPSVTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTV 62
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYL 140
L WPG+NP L SILLNSHTDVVP WSH PF A DS+G I+ARG+QDMKCV +QYL
Sbjct: 63 LTWPGTNPTLSSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYL 122
Query: 141 EAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE 200
EA+RRLK G + R+++++FVPDEE+GGH G E F F++L G LDEG+A+ T+
Sbjct: 123 EAVRRLKVEGHRFPRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTD 182
Query: 201 DYRAFYAERCPWWLVI 216
+ FY+ER PWW+ +
Sbjct: 183 AFTVFYSERSPWWVRV 198
|
| >1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Length = 470 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 4e-31
Identities = 37/202 (18%), Positives = 68/202 (33%), Gaps = 14/202 (6%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLE---FAKNKPLILLKWP 84
D+I++ + ID+S+ + T +A++ + F
Sbjct: 14 DAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENFANYAGRV 73
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
+ + H DVVP W+ PF +D +G I+ RGS D K + +
Sbjct: 74 NFGAGDKRLGIIGHMDVVP-AGEGWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGML 132
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
LK +GF+P + + +EE G + + + D +Y
Sbjct: 133 LLKEAGFKPKKKIDFVLGTNEETNW-VGIDYYLKHEPTPDI--VFSPD-------AEYPI 182
Query: 205 FYAERCPWWLVIKARGAPGHGA 226
E+ + L + G
Sbjct: 183 INGEQGIFTLEFSFKNDDTKGD 204
|
| >3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Length = 433 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 1e-30
Identities = 54/309 (17%), Positives = 101/309 (32%), Gaps = 39/309 (12%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP--- 84
+ + + +Q + + +++ Q + T A K
Sbjct: 26 NDQVAFLQRMVQFRS--VRGEEAPQQEWLAQQFADRGYKVDTFSLADVDIASHPKAAPMD 83
Query: 85 --------------GSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGS 129
S+ + S++L H DVVP P WS P+ A + G + RG+
Sbjct: 84 TIDPAGSMQVVATADSDGKGRSLILQGHIDVVPEGPVDLWSDPPYEAKVR-DGWMIGRGA 142
Query: 130 QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGI 189
QDMK + A+ ++ +G+ P V++ V +EE G+ GA G
Sbjct: 143 QDMKGGVSAMIFALDAIRTAGYAPDARVHVQTVTEEESTGN-GALSTLMR--------GY 193
Query: 190 VLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYD-NSAMENLFKSIESVRRFR 248
D L + A+ W ++ RG P H A SA+ + I + +
Sbjct: 194 RADACLIPEPTGHTLTRAQVGAVWFRLRVRGTPVHVAYSETGTSAILSAMHLIRAFEEYT 253
Query: 249 ASQFD--LVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDA 306
+ + N+ +K G + + + E + +
Sbjct: 254 KELNAQAVRDPWFGQVKNPIKFNVGIIKGGDWA------SSTAAWCELDCRLGLLTGDTP 307
Query: 307 ESLERRIVE 315
+ R I +
Sbjct: 308 QEAMRGIEK 316
|
| >1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Length = 393 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-29
Identities = 49/294 (16%), Positives = 100/294 (34%), Gaps = 36/294 (12%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNA-SKFILAQAEALSLESQTLEFAKNK--PLILLKWP 84
++I+ + I+T + + A F+ A+ + L + A I+ K
Sbjct: 19 PAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIK 78
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGM-QYLEAI 143
G ++LL SH D V + + PF ++ + G D K G L +
Sbjct: 79 GRGG--KNLLLMSHMDTVYLKGI-LAKAPF--RVE-GDKAYGPGIADDKG-GNAVILHTL 131
Query: 144 RRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYR 203
+ LK G + ++ + F DEE G G+ + + + + ++ D +
Sbjct: 132 KLLKEYGVRDYGTITVLFNTDEEKGSF-GSRDLIQEEAKLA-DYVLSFE---PTSAGDEK 186
Query: 204 AFYAERCPWWLVIKARGAPGHGAKLYDN--SAMENLFKSIESVRRFRASQFDLVKAGLKA 261
++ + G H + +A+ + +
Sbjct: 187 LSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMN------------IDD 234
Query: 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVE 315
+ + + N KAG S N+ P+ A D+R D ++ + + E
Sbjct: 235 KAKNLRFNWTIAKAGNVS------NIIPASATLNADVRYARNEDFDAAMKTLEE 282
|
| >2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Length = 364 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 2e-23
Identities = 58/302 (19%), Positives = 111/302 (36%), Gaps = 43/302 (14%)
Query: 28 DSIIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
I+E ++ + P + + FI+ + ++ ++ +++L G
Sbjct: 6 QHIVELTSDLIRFPSMHSRPEQISRCAGFIMDWCAQNGIHAERMDHDGIPSVMVLPEKGR 65
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEA 142
+LL +H DVV F ++ ++ RG+ D K + + +
Sbjct: 66 ----AGLLLMAHIDVVD-----AEDDLFVPRVE-NDRLYGRGANDDKYAVALGLVMFRDR 115
Query: 143 IRRLKASGFQPVR-SVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
+ LKA+G ++ L DEEIGG +GA K + + +G
Sbjct: 116 LNALKAAGRSQKDMALGLLITGDEEIGGMNGAAKALPLIRADYVVAL----DG----GNP 167
Query: 202 YRAFYAERCPWWLVIKARGAPGHGAK--LYDNSAMENLFKSIESVRRFRA-SQFDLVKAG 258
+ E+ + + G HGA+ + N A++ L + ++ A D
Sbjct: 168 QQVITKEKGIIDIKLTCTGKAAHGARPWMGVN-AVDLLMEDYTRLKTLFAEENEDHWHR- 225
Query: 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318
+VN+ ++AG N P AE F+IRV D +L +I + +
Sbjct: 226 --------TVNLGRIRAGE------STNKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVS 271
Query: 319 PA 320
Sbjct: 272 GT 273
|
| >3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Length = 356 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 4e-22
Identities = 57/279 (20%), Positives = 106/279 (37%), Gaps = 37/279 (13%)
Query: 65 LESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNI 124
+E++ ++ + + P + + P+ILLNSH D V + W PF + G +
Sbjct: 41 IEAEGMQTGRKGNNVWCLSPMFDLKKPTILLNSHIDTVKPV-NGWRKDPFTPREE-NGKL 98
Query: 125 FARGSQDMK----CVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
+ GS D + L+ +L + ++ +EE+ G +G E
Sbjct: 99 YGLGSNDAGASVVSL----LQVFLQLCRTSQN--YNLIYLASCEEEVSGKEGIESVLPGL 152
Query: 181 VFNSLNVGIVLDEGLASTTE--DYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLF 238
++ IV E + + AE+ L + A G GH A+ ++A+ +
Sbjct: 153 P--PVSFAIVG--------EPTEMQPAIAEKGLMVLDVTATGKAGHAARDEGDNAIYKVL 202
Query: 239 KSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298
I R +R + G V +++ + AGT N V+ P + DI
Sbjct: 203 NDIAWFRDYRFEKES------PLLGP-VKMSVTVINAGT-QHN--VV---PDKCTFVVDI 249
Query: 299 RVPPTTDAESLERRIVEEWAPASRNMTFEVVINSLSLLH 337
R E L I + A ++ +F + + + H
Sbjct: 250 RSNELYSNEDLFAEIRKHIACDAKARSFRLNSSRIDEKH 288
|
| >2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Length = 369 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 7e-20
Identities = 52/309 (16%), Positives = 81/309 (26%), Gaps = 51/309 (16%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALS-LESQTLEFAKNKPLILLKWPGS 86
S +E + DT P L + + ++ +
Sbjct: 9 ASTLEHLETLVSFDTRNPPRAIAAEGGIFDYLRAQLPGFQVEVIDHGDGAVSLYAVRGT- 67
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEA 142
P L N H D VP P WS P + + G D+K + + A
Sbjct: 68 ----PKYLFNVHLDTVPDSP-HWSADPHVMRRT-EDRVIGLGVCDIKGAAAAL----VAA 117
Query: 143 IRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE-- 200
F DEE F L E
Sbjct: 118 ANAGD-------GDAAFLFSSDEEANDPRCIAAFLARG----------LPYDAVLVAEPT 160
Query: 201 DYRAFYAERCPWWLVIKARGAPGHGAKLYD--NSAMENLFKSIESVRRFRASQFDLVKAG 258
A A R ++++ G GH + D SA+ + + L A
Sbjct: 161 MSEAVLAHRGISSVLMRFAGRAGHASGKQDPAASALHQA---MRWGGKALDHVESLAHA- 216
Query: 259 LKAEGEV--VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEE 316
G + + N+ + G N+ AE F R P+ D + L
Sbjct: 217 --RFGGLTGLRFNIGRVDGGI------KANMIAPAAELRFGFRPLPSMDVDGLLATFAGF 268
Query: 317 WAPASRNMT 325
PA+ +
Sbjct: 269 ADPAAAHFE 277
|
| >3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Length = 492 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 1e-19
Identities = 55/372 (14%), Positives = 102/372 (27%), Gaps = 74/372 (19%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLE---FAKNKPLILLKWP 84
D II + L I++ + + + + +AL + F + +
Sbjct: 34 DQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRI 93
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
+ + + H DVVP W +PF + + I ARG+ D K + AI+
Sbjct: 94 EAGKGNDVLGILCHVDVVP-AGDGWDSNPFEPVVT-EDAIIARGTLDDKGPTIAAYYAIK 151
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDG------------------------AEK----- 175
L+ + +++ DEE EK
Sbjct: 152 ILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTEEMPTLGFAPDAEFPCIHGEKGITTF 211
Query: 176 ------------------------FADSHVFNSLNVGIVLDEGLASTTEDYRAFYA---- 207
+ V + +++ E + +D+ F
Sbjct: 212 DLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFEYFLEQNHL 271
Query: 208 ----ERCPWWLVIKARGAPGHGAKLYD-NSAMENLFKSIESVR----RFRASQFDLVKAG 258
LV+ G HG +A L K + S+ F
Sbjct: 272 QGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLF 331
Query: 259 LKAEGEVVSVNMAFLKAGTPSPN-GFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEW 317
GE + + G + N G + + G ++R P + E R E
Sbjct: 332 NSDFGEKMGMKFHTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEI 391
Query: 318 APASRNMTFEVV 329
++
Sbjct: 392 QQY--GFEVKLG 401
|
| >3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Length = 396 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 53/298 (17%), Positives = 105/298 (35%), Gaps = 51/298 (17%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPL----ILLKW 83
++ F +QID+ + + + + AL L+ + E AK+ L ++
Sbjct: 24 QRLLNTFLELVQIDS--ETGNESTIQPILKEKFIALGLDVKEDEAAKHPKLGANNLVCTM 81
Query: 84 PGSNPQ--LPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQ----DMKCVGM 137
+ + +P + L SH D V + P + G I++ G+ D K
Sbjct: 82 NSTIEEGEVPKLYLTSHMDTVVPA---INVKPI---VKDDGYIYSDGTTILGADDKAGLA 135
Query: 138 QYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLD-EGLA 196
LE ++ +K P + EE G GA++ +S + ++ + G +D
Sbjct: 136 AMLEVLQVIKEQQI-PHGQIQFVITVGEESGLI-GAKEL-NSELLDA-DFGYAIDASADV 191
Query: 197 STTEDYRAFYAERCPWWLVIKARGAPGH-GAKLYDNSAMENLFKSIESVRRFRASQFDLV 255
TT A + K G H SA+ K+I ++ +
Sbjct: 192 GTTV-VGAPTQ----MLISAKIIGKTAHASTPKEGVSAINIAAKAISRMKLGQVD----- 241
Query: 256 KAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRI 313
E+ + N+ G+ + N+ E + R + D E ++ ++
Sbjct: 242 --------EITTANIGKFHGGSAT------NIVADEVILEAEAR---SHDPERIKTQV 282
|
| >3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Length = 369 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-16
Identities = 48/258 (18%), Positives = 78/258 (30%), Gaps = 47/258 (18%)
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRRL 146
++L H D VP + ++ G ++ G+ DMK L L
Sbjct: 70 SRVMLAGHIDTVPIAD------NLPSRVE-DGIMYGCGTVDMKSGLAVY----LHTFATL 118
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE--DYRA 204
S + + L EE+ H H+ + + D LA E
Sbjct: 119 ATST-ELKHDLTLIAYECEEVADHLNGLG----HIRDEHPEWLAAD--LALLGEPTGGWI 171
Query: 205 FYAERCPWWLVIKARGAPGHGAK--LYDNSAMENLFKSIESVRRFRASQ----FDLVKAG 258
+ + + A G H A+ L DN AM L I V ++A++ + G
Sbjct: 172 EAGCQGNLRIKVTAHGVRAHSARSWLGDN-AMHKLSPIISKVAAYKAAEVNIDGLTYREG 230
Query: 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318
L +V +G + N+ P A + R P D V E
Sbjct: 231 L----NIVFCE-----SGVAN------NVIPDLAWMNLNFRFAPNRDLNEAIEH-VVETL 274
Query: 319 PASRNMTFEVVINSLSLL 336
E + +
Sbjct: 275 ELDGQDGIEWAVEDGAGG 292
|
| >3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Length = 373 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 4e-14
Identities = 49/295 (16%), Positives = 88/295 (29%), Gaps = 47/295 (15%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK----NKPLILLKW 83
+ ++ F +Q+D+ + + K + + L +E + ++
Sbjct: 6 ERLVNEFMELVQVDS-ETKFEAEIC-KVLTKKFTDLGVEVFEDDTMAVTGHGAGNLICTL 63
Query: 84 PGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGS----QDMKCVGMQY 139
P + + +I SH D V P G I + G+ D K
Sbjct: 64 PATKDGVDTIYFTSHMDTVV--PGNGIKPSIK-----DGYIVSDGTTILGADDKAGLASM 116
Query: 140 LEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLD-EGLAST 198
EAIR LK P ++ EE G GA+ D + G LD +G
Sbjct: 117 FEAIRVLKEKNI-PHGTIEFIITVGEESGLV-GAKAL-DRERITA-KYGYALDSDGKVGE 172
Query: 199 TEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG 258
A + RG H + + +I + A + G
Sbjct: 173 IV-VAAPTQ----AKVNAIIRGKTAHAGVAPEK--GVS---AITIAAKAIA----KMPLG 218
Query: 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRI 313
+ N+ + GT N+ + + R E +E ++
Sbjct: 219 RIDSE--TTANIGRFEGGTQ------TNIVCDHVQIFAEARS---LINEKMEAQV 262
|
| >3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Length = 377 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 44/245 (17%), Positives = 85/245 (34%), Gaps = 50/245 (20%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRR 145
P I HTDVVP+ + ++WS PF A + G ++ RG+ DMK + A
Sbjct: 60 PVIAFAGHTDVVPTGDENQWSSPPFSAEII-DGMLYGRGAADMKGSLAA----MIVAAEE 114
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLAS--TTEDY- 202
+ ++ L DEE DG ++ + + + ++
Sbjct: 115 YVKANPNHKGTIALLITSDEEATAKDGTIHVVETLMAR----DEKITYCMVGEPSSAKNL 170
Query: 203 --RAFYAERCPWWLVIKARGAPGHGA--KLYDN--SAMENLFKSIESVR------RFRAS 250
R + +G GH A L +N + + + + F +
Sbjct: 171 GDVVKNGRRGSITGNLYIQGIQGHVAYPHLAENPIHKAALFLQELTTYQWDKGNEFFPPT 230
Query: 251 QFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLE 310
++ +++ AGT N+ P+E F++R E ++
Sbjct: 231 SL-----------QIANIH-----AGTG-----SNNVIPAELYIQFNLRYCTEVTDEIIK 269
Query: 311 RRIVE 315
+++ E
Sbjct: 270 QKVAE 274
|
| >2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Length = 481 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 10/146 (6%)
Query: 28 DSIIERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
E R + + + ++ + + E + E P ++ + S
Sbjct: 44 QHYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDESYTA-PFVMAHFKSS 102
Query: 87 NPQLPSILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR 145
P +++ +H D VP++ + W+ PF + G ++ RG D K L A+R+
Sbjct: 103 RPDAKTLIFYNHYDTVPADGDQVWTEDPFTLSVR-NGFMYGRGVDDDKGHITARLSALRK 161
Query: 146 LKASGFQ-PVRSVYLSFVPD--EEIG 168
PV +SF+ + EE
Sbjct: 162 YMQHHDDLPVN---ISFIMEGAEESA 184
|
| >3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Length = 472 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 17/166 (10%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALS---LESQTLEFAKNK------- 76
+ I+ Y++I P+ D + QA +S + +
Sbjct: 17 QEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNR 76
Query: 77 -PLILLKWPGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKC 134
PL+ ++ PG ++LL H D P HP+ L G ++ RG D
Sbjct: 77 TPLLFMEIPG--QIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLK-NGLLYGRGGADDGY 133
Query: 135 VGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
L AIR L+ G R + + EE G + +
Sbjct: 134 SAYASLTAIRALEQQGLPYPRCILI-IEACEESGS-YDLPFYIELL 177
|
| >1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Length = 393 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 55/282 (19%), Positives = 92/282 (32%), Gaps = 45/282 (15%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRR 145
P + HTDVVP+ KW PF G ++ RG+ DMK C ++ A R
Sbjct: 63 PVVCFAGHTDVVPTGPVEKWDSPPFEPAER-DGRLYGRGAADMKTSIAC----FVTACER 117
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVG-IVLDE--GLASTTEDY 202
A S+ L DEE DG K D + ++ E + +
Sbjct: 118 FVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMI 177
Query: 203 RAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAE 262
+ L +K G GH A Y + A+ + ++ +D E
Sbjct: 178 KNGRRGSLSGNLTVK--GKQGHIA--YPHLAINPVHTFAPALLELTQEVWD--------E 225
Query: 263 G---------EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRI 313
G ++ ++N GT N+ P E F+ R + L++R+
Sbjct: 226 GNEYFPPTSFQISNIN-----GGTG-----ATNVIPGELNVKFNFRFSTESTEAGLKQRV 275
Query: 314 VEEWAPASRNMTFEVVINSLSLLHTNPKRMLFWVFPSIYDDT 355
+ + L T ++ +I +
Sbjct: 276 HAILDKHGVQYDLQWSCSGQPFL-TQAGKLTDVARAAIAETC 316
|
| >3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 58/348 (16%), Positives = 107/348 (30%), Gaps = 76/348 (21%)
Query: 28 DSIIERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQTLEFAK----NKPLILLK 82
+ +IERF Y++IDT S + + + + L E + + + + ++
Sbjct: 27 EELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEVGLTEVTMDDNGYVMAT 86
Query: 83 WPGSNP-QLPSILLNSHTDVVPSEPSK--------------------------WSHHPFG 115
P + +P I +H D K P
Sbjct: 87 LPANTDKDVPVIGFLAHLDTATDFTGKNVKPQIHENFDGNAITLNEELNIVLTPEQFPEL 146
Query: 116 AHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHD 171
I G+ D K + + A+ L + + ++F PDEEIG
Sbjct: 147 PSYKGHTIITTDGTTLLGADDKAGLTEIMVAMNYLIHNPQIKHGKIRVAFTPDEEIGR-- 204
Query: 172 GAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGH--GAKLY 229
G F D F + + ++D G E Y +F A + G H AK
Sbjct: 205 GPAHF-DVEAFGA-SFAYMMDGGPLGGLE-YESFNAAGA----KLTFNGTNTHPGTAKNK 257
Query: 230 DNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQP 289
+A + + + A ++ G + +N
Sbjct: 258 MRNATKLAMEFNGHLPVEEAPEYTEGYEGF--------------------YHLLSLNGDV 297
Query: 290 SEAEAGFDIRVPPTTDAESLERR------IVEEWAPASRNMTFEVVIN 331
+++A + IR D ++ E R IV++ + +N
Sbjct: 298 EQSKAYYIIR---DFDRKNFEARKNTIENIVKQMQEKYGQDAVVLEMN 342
|
| >1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A Length = 417 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 2e-10
Identities = 67/324 (20%), Positives = 101/324 (31%), Gaps = 72/324 (22%)
Query: 28 DSIIERFRAYLQIDT-SQPNPDYT-------NASKFILAQAEALSLESQTLEFAKNKPLI 79
D ++ERF Y+ +DT S+ + + Q E + L + TL +
Sbjct: 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLSEKGT---L 58
Query: 80 LLKWPGSNP-QLPSILLNSHTDVVPSEPSK-------------------------WSHHP 113
+ P + +P+I SH D P K P
Sbjct: 59 MATLPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFP 118
Query: 114 FGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG 169
L Q I G D K + + A+ LK + P + ++F PDEE+G
Sbjct: 119 VLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKGNPI-PHGDIKVAFTPDEEVGK 177
Query: 170 HDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLY 229
GA+ F D F + +D G E + F A + IK G H
Sbjct: 178 --GAKHF-DVEAFGA-QWAYTVDGGGVGELE-FENFNA----ASVNIKIVGNNVHPG--- 225
Query: 230 DNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQP 289
+A + ++ R A V A E F + M
Sbjct: 226 --TAKGVMVNALSLAARIHA----EVPADEAPET--TEGYEGFYHLAS-------MKGTV 270
Query: 290 SEAEAGFDIRVPPTTDAESLERRI 313
AE + IR D + E R
Sbjct: 271 DRAEMHYIIR---DFDRKQFEARK 291
|
| >3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A Length = 268 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS 149
P + HTDVVP+ S+W PF + G + RG+ DMK + A+ R A
Sbjct: 63 PLFVFAGHTDVVPAGPLSQWHTPPFEPTVI-DGFLHGRGAADMKGSLACMIVAVERFIAE 121
Query: 150 GFQPVRSVYLSFVPDEEIGGHDGAEK 175
S+ DEE +G +
Sbjct: 122 HPDHQGSIGFLITSDEEGPFINGTVR 147
|
| >3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Length = 485 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 24/172 (13%)
Query: 28 DSIIERFRAYLQIDT--SQPNPDYTN----ASKFILAQAEALSLESQTLEFAKNKPLILL 81
D ++ + ++ I++ QP P + + L +++ +
Sbjct: 25 DEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLPDGQ 84
Query: 82 KWPG---------SNPQLPSILLNSHTDVVPSEPS-KWSHHPFGAHLDSQGNIFARGSQD 131
P S+P ++ H DV P++ W P+ G ++ RG+ D
Sbjct: 85 SLPIPPVILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEV-DGKLYGRGATD 143
Query: 132 MKCVGMQYLEAIRRLKASGFQ-PVRSVYLSFVPD--EEIGGHDGAEKFADSH 180
K + ++ A+ +A PV + F+ + EE G E+ +
Sbjct: 144 NKGPVLAWINAVSAFRALEQDLPVN---IKFIIEGMEEAGS-VALEELVEKE 191
|
| >2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Length = 479 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 22/170 (12%)
Query: 28 DSIIERFRAYLQIDT--SQP--NPDYTNASKFILAQAEALSLESQTLEFAKNK------- 76
D +++ ++ I + + P + + A + L + ++ K K
Sbjct: 20 DRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEI 79
Query: 77 --PLILLKWPGSNPQLPSILLNSHTDVVPSEPS-KWSHHPFGAHLDSQGNIFARGSQDMK 133
P ILL GS+PQ ++ + H DV P+ W PF +G ++ RGS D K
Sbjct: 80 PLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVER-EGKLYGRGSTDDK 138
Query: 134 CVGMQYLEAIRRLKASGFQ-PVRSVYLSFVPD--EEIGGHDGAEKFADSH 180
++ A+ + +G + PV L F + EE G +G ++ +
Sbjct: 139 GPVAGWMNALEAYQKTGQEIPVN---LRFCLEGMEESGS-EGLDELIFAQ 184
|
| >1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Length = 299 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 8e-08
Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 27/172 (15%)
Query: 32 ERFRAYLQIDTSQPN-----PDYTNASKFILAQAEALSLESQTLEFAKNKPL------IL 80
+ + S N AS +I ++ +ALS + ++
Sbjct: 20 SQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVV 79
Query: 81 LKWPGSNPQLPSILLNSHTD-VVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQY 139
+ GS I++ H D + S ++ S P GA D+ G +
Sbjct: 80 MTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAP-GADDDASG-----------IAAV-- 125
Query: 140 LEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVL 191
E IR L + FQP RS+ EE G G++ A+ + NV L
Sbjct: 126 TEVIRVLSENNFQPKRSIAFMAYAAEE-VGLRGSQDLANQYKSEGKNVVSAL 176
|
| >1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Length = 284 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 32/118 (27%)
Query: 114 FGAHLDSQG-------NIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166
GAHLDS N GS + LE + +G+QP + + ++ EE
Sbjct: 82 AGAHLDSVSSGAGINDN--GSGS-----AAV--LETALAVSRAGYQPDKHLRFAWWGAEE 132
Query: 167 IGGHDGAEKFADSH----------VFN-----SLNVGIVLDEGLASTTEDYRAFYAER 209
+G G++ + ++ N S N G + + + ++ ++A
Sbjct: 133 LGLI-GSKFYVNNLPSADRSKLAGYLNFDMIGSPNPGYFVYDDDPVIEKTFKNYFAGL 189
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 356 | |||
| 3pfo_A | 433 | Putative acetylornithine deacetylase; metal bindin | 100.0 | |
| 1vgy_A | 393 | Succinyl-diaminopimelate desuccinylase; structural | 100.0 | |
| 3ct9_A | 356 | Acetylornithine deacetylase; NP_812461.1, A putati | 100.0 | |
| 3isz_A | 377 | Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b | 100.0 | |
| 3pfe_A | 472 | Succinyl-diaminopimelate desuccinylase; metal bind | 100.0 | |
| 3dlj_A | 485 | Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti | 100.0 | |
| 2f7v_A | 369 | Aectylcitrulline deacetylase; alpha/beta, hydrolas | 100.0 | |
| 2pok_A | 481 | Peptidase, M20/M25/M40 family; M20 family peptidas | 100.0 | |
| 1cg2_A | 393 | Carboxypeptidase G2; metallocarboxypeptidase, hydr | 100.0 | |
| 3io1_A | 445 | Aminobenzoyl-glutamate utilization protein; peptid | 100.0 | |
| 2zog_A | 479 | Cytosolic non-specific dipeptidase; metallopeptida | 100.0 | |
| 2rb7_A | 364 | Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat | 100.0 | |
| 3tx8_A | 369 | Succinyl-diaminopimelate desuccinylase; peptidase, | 100.0 | |
| 1ysj_A | 404 | Protein YXEP; M20 family peptidase, dinuclear meta | 100.0 | |
| 3gb0_A | 373 | Peptidase T; NP_980509.1, aminopeptidase PEPT, pep | 100.0 | |
| 1xmb_A | 418 | IAA-amino acid hydrolase homolog 2; structural gen | 100.0 | |
| 3rza_A | 396 | Tripeptidase; phosphorylase/hydrolase-like, struct | 100.0 | |
| 3ife_A | 434 | Peptidase T; metallopeptidase, aminopeptidase, hyd | 100.0 | |
| 3khx_A | 492 | Putative dipeptidase sacol1801; DAPE, metallopepti | 100.0 | |
| 2qyv_A | 487 | XAA-His dipeptidase; YP_718209.1, structural genom | 100.0 | |
| 1fno_A | 417 | Peptidase T; metallo peptidase, protease, hydrolas | 100.0 | |
| 1lfw_A | 470 | PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac | 100.0 | |
| 3mru_A | 490 | Aminoacyl-histidine dipeptidase; metalloprotease, | 100.0 | |
| 3ram_A | 394 | HMRA protein; two-domain, catalytic (alpha-beta-al | 100.0 | |
| 1q7l_A | 198 | Aminoacylase-1; catalysis, enzyme dimerization, si | 100.0 | |
| 3n5f_A | 408 | L-carbamoylase, N-carbamoyl-L-amino acid hydrolase | 100.0 | |
| 2v8h_A | 474 | Beta-alanine synthase; amidohydrolase, alpha and b | 100.0 | |
| 1z2l_A | 423 | Allantoate amidohydrolase; ALLC, purine cataboli a | 100.0 | |
| 3t68_A | 268 | Succinyl-diaminopimelate desuccinylase; DAPE, csgi | 99.96 | |
| 4h2k_A | 269 | Succinyl-diaminopimelate desuccinylase; DAPE, MCSG | 99.96 | |
| 2fvg_A | 340 | Endoglucanase; TM1049, structural genomics, joint | 99.86 | |
| 2gre_A | 349 | Deblocking aminopeptidase; structural genomi prote | 99.83 | |
| 1rtq_A | 299 | Bacterial leucyl aminopeptidase; bimetallic, zinc, | 99.82 | |
| 1tkj_A | 284 | Aminopeptidase, SGAP; double-zinc metalloproteinas | 99.82 | |
| 2wyr_A | 332 | Cobalt-activated peptidase TET1; hydrolase, large | 99.8 | |
| 1vhe_A | 373 | Aminopeptidase/glucanase homolog; structural genom | 99.8 | |
| 3tc8_A | 309 | Leucine aminopeptidase; phosphorylase/hydrolase-li | 99.78 | |
| 3gux_A | 314 | Putative Zn-dependent exopeptidase; aminopeptidase | 99.78 | |
| 1y0y_A | 353 | FRV operon protein FRVX; aminopeptidase, PDZ, hydr | 99.73 | |
| 2afw_A | 329 | Glutaminyl-peptide cyclotransferase; alpha-beta pr | 99.72 | |
| 1vho_A | 346 | Endoglucanase; structural genomics, unknown functi | 99.65 | |
| 1ylo_A | 348 | Hypothetical protein SF2450; structural genomics, | 99.64 | |
| 4fuu_A | 309 | Leucine aminopeptidase; phosphorylase/hydrolase li | 99.62 | |
| 3kl9_A | 355 | PEPA, glutamyl aminopeptidase; tetrahedral aminope | 99.58 | |
| 4f9u_A | 312 | CG32412; alpha/beta hydrolase, PGlu formation, PE, | 99.57 | |
| 3cpx_A | 321 | Aminopeptidase, M42 family; YP_676701.1, putative | 99.56 | |
| 3pb6_X | 330 | Glutaminyl-peptide cyclotransferase-like protein; | 99.56 | |
| 2wzn_A | 354 | TET3, 354AA long hypothetical operon protein FRV; | 99.55 | |
| 4fai_A | 330 | CG5976, isoform B; alpha/beta hydrolase, PGlu form | 99.53 | |
| 2vpu_A | 354 | TET3, 354AA long hypothetical operon protein FRV; | 99.45 | |
| 3isx_A | 343 | Endoglucanase; TM1050, structural genomics, joint | 99.35 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 99.24 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 99.24 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 98.88 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 98.88 | |
| 3k9t_A | 435 | Putative peptidase; structural genomics, joint cen | 96.93 | |
| 2glj_A | 461 | Probable M18-family aminopeptidase 1; aminopeptida | 90.6 | |
| 1y7e_A | 458 | Probable M18-family aminopeptidase 1; aminopeptida | 90.04 | |
| 2glf_A | 450 | Probable M18-family aminopeptidase 1; putative, NY | 88.59 | |
| 3h8g_F | 497 | Cytosol aminopeptidase; hydrolase, manganese, meta | 87.78 | |
| 2ijz_A | 428 | Probable M18-family aminopeptidase 2; putative ami | 87.57 | |
| 3kzw_A | 515 | Cytosol aminopeptidase; hydrolase, manganese bindi | 87.28 | |
| 1y7e_A | 458 | Probable M18-family aminopeptidase 1; aminopeptida | 86.88 | |
| 2glf_A | 450 | Probable M18-family aminopeptidase 1; putative, NY | 86.8 | |
| 3pei_A | 486 | Cytosol aminopeptidase; structural genomics, cente | 86.58 | |
| 4efd_A | 522 | Aminopeptidase; structural genomics, structural ge | 86.26 | |
| 1gyt_A | 503 | Cytosol aminopeptidase; hydrolase, DNA recombinati | 85.68 | |
| 2hc9_A | 491 | Leucine aminopeptidase 1; carbonate, structural ge | 85.66 | |
| 1lam_A | 484 | Leucine aminopeptidase; exopeptidase, metallopepti | 83.22 | |
| 2ijz_A | 428 | Probable M18-family aminopeptidase 2; putative ami | 83.19 | |
| 3jru_B | 490 | Probable cytosol aminopeptidase; bacterial blight, | 82.36 | |
| 3ij3_A | 482 | Cytosol aminopeptidase; PEPB, peptidase M17 family | 81.69 | |
| 3kr4_A | 528 | M17 leucyl aminopeptidase; protease, hydrolase; HE | 81.18 |
| >3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=344.81 Aligned_cols=277 Identities=18% Similarity=0.254 Sum_probs=234.1
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEee------------------cCCCceEEEEec
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF------------------AKNKPLILLKWP 84 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~------------------~~~~~nv~~~~~ 84 (356)
++...+++++++++|+++||. +++|.++++||.++|+++|++++.+.. .++.+||++.++
T Consensus 21 i~~~~~~~~~~l~~l~~~ps~--s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~via~~~ 98 (433)
T 3pfo_A 21 VDRNFNDQVAFLQRMVQFRSV--RGEEAPQQEWLAQQFADRGYKVDTFSLADVDIASHPKAAPMDTIDPAGSMQVVATAD 98 (433)
T ss_dssp HHHHHHHHHHHHHHHHTSCCB--TTCCHHHHHHHHHHHHHTTCEEEEEETGGGTGGGSTTCCCCTTCCGGGCEEEEEEEC
T ss_pred HHhhHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHHCCCceEEEecchhhhhccccccccccccCCCCcEEEEEEe
Confidence 344568899999999999997 578999999999999999999887642 246789999998
Q ss_pred CCCCCCCcEEEEeecccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEee
Q 018435 85 GSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVP 163 (356)
Q Consensus 85 g~~~~~~~il~~aH~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~ 163 (356)
|.. .+|+|+|+|||||||.++ ++|+++||++.+ ++|++||||++|||++++++|.+++.|++.+..++++|.|+|++
T Consensus 99 g~~-~~~~v~l~aH~D~vp~~~~~~w~~~pf~~~~-~~g~~~g~G~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~ 176 (433)
T 3pfo_A 99 SDG-KGRSLILQGHIDVVPEGPVDLWSDPPYEAKV-RDGWMIGRGAQDMKGGVSAMIFALDAIRTAGYAPDARVHVQTVT 176 (433)
T ss_dssp CCC-CSCCEEEEEECCBCCCCCGGGCSSCTTTCCE-ETTEEECTTTTTTHHHHHHHHHHHHHHHHTTEEESSCEEEEEES
T ss_pred cCC-CCCEEEEEcccCCcCCCCcccCCCCCCCcEE-ECCEEEecchhhhhHHHHHHHHHHHHHHHcCCCCCccEEEEEEe
Confidence 754 458999999999999976 799999999988 89999999999999999999999999999887788999999999
Q ss_pred ccccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHH
Q 018435 164 DEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIE 242 (356)
Q Consensus 164 ~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~ 242 (356)
+||.|+ .|++.+++.+. +.|.+++.+ |+. ..++++.+|..+++|+++|+++|++.|+.+ ||+..+++++.
T Consensus 177 ~EE~g~-~G~~~~~~~~~--~~d~~i~~e-----p~~-~~i~~~~~G~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~i~ 247 (433)
T 3pfo_A 177 EEESTG-NGALSTLMRGY--RADACLIPE-----PTG-HTLTRAQVGAVWFRLRVRGTPVHVAYSETGTSAILSAMHLIR 247 (433)
T ss_dssp CTTTTC-HHHHHHHHTTC--CCSEEEECC-----CCS-SCEEEEECEEEEEEEEEECCCCBGGGGGGSCCHHHHHHHHHH
T ss_pred cCccCC-hhHHHHHhcCC--CCCEEEEeC-----CCC-CceEEecceEEEEEEEEEcCCCccCCCCcCcCHHHHHHHHHH
Confidence 999986 59999887642 467777664 443 478999999999999999999999999888 99999999999
Q ss_pred HHHcchhhhHHHHH-hc-ccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 243 SVRRFRASQFDLVK-AG-LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 243 ~i~~~~~~~~~~~~-~~-~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
.|+.+......... ++ +.......+++++.++||. +.|+||++|++.+++|+.|.++.+++.++|++.+.
T Consensus 248 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vg~i~gG~------~~NvIP~~a~~~~~iR~~~~~~~~~~~~~i~~~~~ 319 (433)
T 3pfo_A 248 AFEEYTKELNAQAVRDPWFGQVKNPIKFNVGIIKGGD------WASSTAAWCELDCRLGLLTGDTPQEAMRGIEKCLA 319 (433)
T ss_dssp HHHHHHHHHHHHGGGCTTTTTSSSCSCEEEEEEEECS------CTTBCCCEEEEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccCccccccCCCceEEeeeEECCC------CCcccCcEEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99877542111100 10 1111234689999999998 99999999999999999999999999999987765
|
| >1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=337.95 Aligned_cols=290 Identities=19% Similarity=0.272 Sum_probs=230.9
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
..+++++++++|+++||. +++|.+++++|.++|+++|++++.... ++.+|+++.+ |+ +.|+|+|+|||||||.+
T Consensus 4 ~~~~~~~~l~~lv~~ps~--s~~e~~~~~~l~~~l~~~G~~~~~~~~-~~~~nv~a~~-g~--~~~~i~l~~H~D~Vp~~ 77 (393)
T 1vgy_A 4 TETQSLELAKELISRPSV--TPDDRDCQKLMAERLHKIGFAAEEMHF-GNTKNIWLRR-GT--KAPVVCFAGHTDVVPTG 77 (393)
T ss_dssp CCSHHHHHHHHHHTSCCB--TTCCTTHHHHHHHHHHTTTCEEEECCB-TTBCEEEEEE-CS--SSSEEEEEEECCBCCCC
T ss_pred chHHHHHHHHHHhcCCCC--CCCcHHHHHHHHHHHHHcCCcEEEEec-CCCcEEEEEE-CC--CCCEEEEEcccCCcCCC
Confidence 357899999999999997 457888999999999999998875332 4678999999 65 24899999999999997
Q ss_pred C-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccccc-
Q 018435 106 P-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN- 183 (356)
Q Consensus 106 ~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~- 183 (356)
+ .+|+++||++.+ ++|++||||++|||++++++|++++.|++.+..++++|+|+|+++||+++..|++.+++.....
T Consensus 78 ~~~~w~~~Pf~~~~-~~g~l~grG~~D~k~~~aa~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~~~Ga~~~~~~~~~~~ 156 (393)
T 1vgy_A 78 PVEKWDSPPFEPAE-RDGRLYGRGAADMKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARD 156 (393)
T ss_dssp CGGGSSSCTTSCEE-ETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCTTSHHHHHHHHHHTT
T ss_pred CcccCCCCCCceEE-ECCEEEecCcccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCcCCHHHHHHHHHhcC
Confidence 6 689999999998 8999999999999999999999999999887778999999999999986556999887653222
Q ss_pred -CCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccc
Q 018435 184 -SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKA 261 (356)
Q Consensus 184 -~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~ 261 (356)
..+.+++.+.+...+.+ ..+..+.+|..+++|+++|+++|++.|+.+ ||+..+++++..+..+.... ...
T Consensus 157 ~~~d~~i~~e~~~~~~~g-~~i~~g~~G~~~~~i~v~G~~~Ha~~P~~g~nAi~~~a~~i~~l~~~~~~~-------~~~ 228 (393)
T 1vgy_A 157 ELIDYCIVGEPTAVDKLG-DMIKNGRRGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDE-------GNE 228 (393)
T ss_dssp CCEEEEEECCCCBSSSTT-SEEECEECEEEEEEEEEECBCEETTCGGGCBCHHHHHHHHHHHHHHCCCCC-------CCS
T ss_pred cCCCEEEEeCCCCcccCC-ceeEEeeeeEEEEEEEEEccCcccCCCccCCCHHHHHHHHHHHhhcccccc-------ccc
Confidence 24555555433211111 137788999999999999999999999988 99999999999987653210 001
Q ss_pred cCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEeecccc
Q 018435 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVINSLSL 335 (356)
Q Consensus 262 ~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 335 (356)
....++++++.+++|.. +.|+||++|++.+++|+++.++.+++.++|++++......+++++.....|+
T Consensus 229 ~~~~~~~~v~~i~gG~~-----~~NviP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~p~ 297 (393)
T 1vgy_A 229 YFPPTSFQISNINGGTG-----ATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYDLQWSCSGQPF 297 (393)
T ss_dssp SCCCCEEEEEEEEECCS-----CTTEECSEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEEEECCE
T ss_pred ccCCCeEEEeeEcCCCC-----CCcccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 12346888999998841 7899999999999999999999999999999877632233444443333443
|
| >3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-43 Score=331.70 Aligned_cols=259 Identities=23% Similarity=0.309 Sum_probs=217.5
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
..+++++++++|+++||+ +++|.++++|+.++|+++|++++.. .+|++++++|++++.|+|+|.|||||||++
T Consensus 9 ~~~~~~~~~~~l~~~ps~--s~~e~~~~~~l~~~l~~~g~~~~~~-----~~nv~a~~~g~~~~~~~i~l~aH~D~vp~~ 81 (356)
T 3ct9_A 9 MTAEAVSLLKSLISIPSI--SREETQAADFLQNYIEAEGMQTGRK-----GNNVWCLSPMFDLKKPTILLNSHIDTVKPV 81 (356)
T ss_dssp HHHHHHHHHHHHHTSCCB--TTCCHHHHHHHHHHHHHTTCCEEEE-----TTEEEEECSSCCTTSCEEEEEEECCBCCCC
T ss_pred HHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHHCCCeEEEE-----eeeEEEEEecCCCCCCeEEEEccccccCCC
Confidence 357899999999999997 5688999999999999999988762 789999998733345899999999999997
Q ss_pred CCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc-CccccHHHHhccccccC
Q 018435 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI-GGHDGAEKFADSHVFNS 184 (356)
Q Consensus 106 ~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~-g~~~G~~~~~~~~~~~~ 184 (356)
+ +|+.+||++.+ ++|++||||++|||++++++|++++.|++.+ ++++|+|+|+++||. |+ .|++++++++ .+
T Consensus 82 ~-~w~~~p~~~~~-~~g~~~g~G~~D~k~g~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~~g~-~G~~~~~~~~--~~ 154 (356)
T 3ct9_A 82 N-GWRKDPFTPRE-ENGKLYGLGSNDAGASVVSLLQVFLQLCRTS--QNYNLIYLASCEEEVSGK-EGIESVLPGL--PP 154 (356)
T ss_dssp --------CCCEE-CSSEEESTTTTTTHHHHHHHHHHHHHHTTSC--CSSEEEEEEECCGGGTCT-TTHHHHGGGS--CC
T ss_pred C-CCCCCCCccEE-ECCEEEecCcccchHHHHHHHHHHHHHHhcC--CCCCEEEEEEeCcccCCc-cCHHHHHhhC--CC
Confidence 5 79999999998 8999999999999999999999999999876 689999999999998 64 6999999875 34
Q ss_pred CceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccC
Q 018435 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263 (356)
Q Consensus 185 ~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 263 (356)
.|++++.+ |+. ..++++.+|..+++|+++|+++|++.| .+ ||+..+++++..++.+.... . ....
T Consensus 155 ~d~~i~~e-----p~~-~~i~~~~~G~~~~~i~~~G~~~Ha~~p-~g~nAi~~~~~~i~~l~~~~~~~----~---~~~~ 220 (356)
T 3ct9_A 155 VSFAIVGE-----PTE-MQPAIAEKGLMVLDVTATGKAGHAARD-EGDNAIYKVLNDIAWFRDYRFEK----E---SPLL 220 (356)
T ss_dssp CSEEEECC-----SBT-TCCEEEECCCEEEEEEEECBCCBTTSS-CCBCTTGGGHHHHHHHHHCCCSC----C---BTTT
T ss_pred CCEEEEcC-----CCC-ceEEEeeeEEEEEEEEEECCCcccCCC-CCCCHHHHHHHHHHHHHhhhccc----c---cccC
Confidence 66666664 432 367889999999999999999999999 88 99999999999998764310 0 0012
Q ss_pred CceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 264 ~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
..++++++.++||. +.|+||++|++.+++|+++.++.+++.++|++.+.
T Consensus 221 ~~~~~~vg~i~gG~------~~NviP~~a~~~~~iR~~~~~~~~~~~~~i~~~~~ 269 (356)
T 3ct9_A 221 GPVKMSVTVINAGT------QHNVVPDKCTFVVDIRSNELYSNEDLFAEIRKHIA 269 (356)
T ss_dssp BSCEEEEEEEEECS------STTBCCSEEEEEEEEECCTTCCHHHHHHHHHHHCC
T ss_pred CCCcEEeeEEecCC------cCCcCCCceEEEEEEeeCCCCCHHHHHHHHHHHhh
Confidence 34789999999998 99999999999999999999999999999998775
|
| >3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-42 Score=326.66 Aligned_cols=282 Identities=18% Similarity=0.259 Sum_probs=222.7
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~ 106 (356)
.+++++++++|+++||+ +++|.+++++|.++|+++|++++.+. .++.+|+++.+ |+ +.|+|+|+||||+||.++
T Consensus 2 ~~~~~~~~~~L~~~ps~--s~~e~~~~~~l~~~l~~~g~~~~~~~-~~~~~n~~a~~-g~--~~~~i~l~aH~D~vp~~~ 75 (377)
T 3isz_A 2 KEKVVSLAQDLIRRPSI--SPNDEGCQQIIAERLEKLGFQIEWMP-FNDTLNLWAKH-GT--SEPVIAFAGHTDVVPTGD 75 (377)
T ss_dssp HHHHHHHHHHHHTSCCB--TTCCTTHHHHHHHHHHHTTCEEEECC-BTTBCEEEEEE-ES--SSCEEEEEEECCBCCCCC
T ss_pred chHHHHHHHHHhcCCCC--CCChhhHHHHHHHHHHHCCCceEEee-cCCCceEEEEe-CC--CCCEEEEeccccccCCCC
Confidence 36789999999999997 56788999999999999999887532 24678999988 64 358999999999999987
Q ss_pred -CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccc--c
Q 018435 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF--N 183 (356)
Q Consensus 107 -~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~--~ 183 (356)
++|+++||++.+ ++|++||||++|||++++++|.+++.|++.+..++++|+|+|+++||.|+..|++.+++.... .
T Consensus 76 ~~~w~~~pf~~~~-~~g~~~g~G~~D~k~g~~~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~~~G~~~~~~~~~~~~~ 154 (377)
T 3isz_A 76 ENQWSSPPFSAEI-IDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTIHVVETLMARDE 154 (377)
T ss_dssp GGGCSSCTTSCCE-ETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCSSSHHHHHHHHHHTTC
T ss_pred cccCCCCCCCcEE-ECCEEEeCChhhhhHHHHHHHHHHHHHHHhCCCCCceEEEEEEcccccCccccHHHHHHHHHhcCC
Confidence 689999999998 899999999999999999999999999988777899999999999998754599988765322 2
Q ss_pred CCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhccccc
Q 018435 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (356)
Q Consensus 184 ~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 262 (356)
..+.+++.+.....+.+ ..+..+.+|..+++++++|+++|++.|+.+ ||+..+++++..+..+.... ....
T Consensus 155 ~~d~~~~~e~~~~~~~g-~~i~~g~~g~~~~~i~~~G~~~Ha~~p~~g~nai~~~~~~i~~l~~~~~~~-------~~~~ 226 (377)
T 3isz_A 155 KITYCMVGEPSSAKNLG-DVVKNGRRGSITGNLYIQGIQGHVAYPHLAENPIHKAALFLQELTTYQWDK-------GNEF 226 (377)
T ss_dssp CCCEEEECCCCBSSSTT-SEEEEEECEEEEEEEEEECC-------CGGGCHHHHHHHHHHHHHHCCCCC-------CCSS
T ss_pred CCCEEEEcCCCCcccCC-ceEEEEcceEEEEEEEEEccccccCCCccCcCHHHHHHHHHHHHHhccccc-------cccc
Confidence 35666654432211211 237889999999999999999999999988 99999999999987653210 0011
Q ss_pred CCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEe
Q 018435 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVI 330 (356)
Q Consensus 263 ~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 330 (356)
...++++++.+++|.. +.|+||++|++.+|+|+++.++.+++.++|++.+.. .++++++..
T Consensus 227 ~~~~~~~v~~i~gg~~-----~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~~~~--~g~~~~i~~ 287 (377)
T 3isz_A 227 FPPTSLQIANIHAGTG-----SNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEK--HNLKYRIEW 287 (377)
T ss_dssp SCCCEEEEEEEEECCS-----CSSCCCSEEEEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred cCCceeEEEEEECCCC-----CCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHH--cCCCeEEEE
Confidence 2347899999998852 689999999999999999999999999999987753 455555543
|
| >3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=338.67 Aligned_cols=294 Identities=18% Similarity=0.211 Sum_probs=235.1
Q ss_pred hHHHHHHHhhhcccCCCCC--------cChhHHHHHHHHHHHHCCCc---eEEEeecCCCceEEEEecCCCCCCCcEEEE
Q 018435 28 DSIIERFRAYLQIDTSQPN--------PDYTNASKFILAQAEALSLE---SQTLEFAKNKPLILLKWPGSNPQLPSILLN 96 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~--------~~e~~~~~~l~~~l~~~g~~---~~~~~~~~~~~nv~~~~~g~~~~~~~il~~ 96 (356)
++++++|++|++|||+|+. ++|.++++++.++|+++|++ ++.++...+.+||++.++| . +.|+|+|+
T Consensus 18 ~~~~~~l~~lv~ips~s~~~~~~~~~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~v~a~~~g-~-~~~~i~l~ 95 (472)
T 3pfe_A 18 EEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPG-Q-IDDTVLLY 95 (472)
T ss_dssp HTHHHHHHHHHTCCCBCGGGCTTHHHHCHHHHHHHHHHHHHHHTCCTTCEEEEECCTTSCCEEEEEECC-S-EEEEEEEE
T ss_pred HHHHHHHHHHhCCCCcCCCccccccccchHHHHHHHHHHHHHHcCCCCcceEEEecCCCCcEEEEEEcC-C-CCCeEEEE
Confidence 6799999999999998643 34889999999999999985 5544433347899999987 3 35899999
Q ss_pred eecccCCCCCCCCC--CCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHH
Q 018435 97 SHTDVVPSEPSKWS--HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (356)
Q Consensus 97 aH~Dtvp~~~~~w~--~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (356)
|||||||+. +.|+ .+||++++ ++|++||||++|||++++++|.|++.|++.+..+. +|+|+|+++||+|+ .|++
T Consensus 96 ~H~D~vp~~-~~w~~~~~Pf~~~~-~~g~~~grG~~D~K~~~a~~l~a~~~l~~~~~~~~-~v~~~~~~~EE~g~-~g~~ 171 (472)
T 3pfe_A 96 GHLDKQPEM-SGWSDDLHPWKPVL-KNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYP-RCILIIEACEESGS-YDLP 171 (472)
T ss_dssp EECCBCCCC-SCCCTTCBTTBCEE-ETTEEESTTCCCCCHHHHHHHHHHHHHHHTTCCCE-EEEEEEESCGGGTS-TTHH
T ss_pred ccccCCCCc-CCCCcCCCCCceEE-ECCEEEEeCcccCcHHHHHHHHHHHHHHHcCCCCC-cEEEEEEeCCCCCC-hhHH
Confidence 999999996 7899 99999988 89999999999999999999999999999887766 99999999999987 6999
Q ss_pred HHhccc--cccCCceEEEEecCccCcCCcceeEEeeeeeEEEE--EEEEecCCccCCCCCC--CHHHHHHHHHHHHHcch
Q 018435 175 KFADSH--VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLV--IKARGAPGHGAKLYDN--SAMENLFKSIESVRRFR 248 (356)
Q Consensus 175 ~~~~~~--~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~--v~~~G~~~Hs~~p~~g--nai~~~~~~~~~i~~~~ 248 (356)
++++++ .+.+.+.++++|.+...+ +...+.+|.+|..+++ |+++|+++|++.|+.. ||+..+++++..|+.+.
T Consensus 172 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~i~~g~~G~~~~~~~v~~~G~~~H~~~~~~~~~nai~~~~~~i~~l~~~~ 250 (472)
T 3pfe_A 172 FYIELLKERIGKPSLVICLDSGAGNY-EQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDEN 250 (472)
T ss_dssp HHHHHHHHHHCCCSEEEEECCBCSCS-SSCEEEEEECEEEEEEEEEESCSSCBCHHHHTTTSCCHHHHHHHHHHHHBCTT
T ss_pred HHHHHhHhhccCCCEEEEeCCCcCCC-CCeeEEEeeeEEEEEEEEEEeCCCCcccCCCCCCCCCHHHHHHHHHHHhhCcC
Confidence 999864 344678888888654333 3568999999999877 5558999999998764 99999999999998762
Q ss_pred h-------------h----hHHHHHh----------cc----cccC-----------CceeeeEeeeecCCCCCCCcccc
Q 018435 249 A-------------S----QFDLVKA----------GL----KAEG-----------EVVSVNMAFLKAGTPSPNGFVMN 286 (356)
Q Consensus 249 ~-------------~----~~~~~~~----------~~----~~~~-----------~~~~v~~~~i~~g~~~~~~~~~n 286 (356)
. + ....+.. ++ .... ..++++++.++||.. ++.+.|
T Consensus 251 ~~~i~i~gf~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~i~~i~gG~~--~g~a~N 328 (472)
T 3pfe_A 251 TGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPA--IADAGN 328 (472)
T ss_dssp TCCBCCGGGCCCCCHHHHHHHHHHHHHHGGGGTTTSCCCTTCCCSCSCHHHHHHHHHTSCEEEEEEEESCCC--TTTCCS
T ss_pred CCCEeCCCcccCCCCccHHHHHHHhhhccHHHHHhcccccCccccccchHHHHHHhhcCCcEEEeeeecCcC--CCCCCC
Confidence 0 0 0000000 00 0000 047899999998720 122899
Q ss_pred ccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEEe
Q 018435 287 LQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVVI 330 (356)
Q Consensus 287 vip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~ 330 (356)
+||++|++++++|+.+.++.+.+.++|++++.. ...++++++..
T Consensus 329 vIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~g~~v~v~~ 373 (472)
T 3pfe_A 329 VMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKI 373 (472)
T ss_dssp CBCSEEEEEEEEEECTTCCHHHHHHHHHHHHHSSCGGGCEEEEEE
T ss_pred EeCCccEEEEEeecCCCCCHHHHHHHHHHHHHhhCCCCeEEEEEe
Confidence 999999999999999999999999999987763 23677887765
|
| >3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-42 Score=338.11 Aligned_cols=289 Identities=15% Similarity=0.264 Sum_probs=227.8
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcC------hhHHHHHHHHHHHHCCCceEEEeec-----CC-----CceEEEEecCC
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPD------YTNASKFILAQAEALSLESQTLEFA-----KN-----KPLILLKWPGS 86 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~------e~~~~~~l~~~l~~~g~~~~~~~~~-----~~-----~~nv~~~~~g~ 86 (356)
++...+++++++++|++|||++.+.+ +.++++||.++|+++|++++..+.. ++ .+||++.+.+.
T Consensus 20 i~~~~~~~i~~l~~lv~ips~~~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~~v~a~~~~~ 99 (485)
T 3dlj_A 20 IDLHQDEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLPDGQSLPIPPVILAELGSD 99 (485)
T ss_dssp HHHTHHHHHHHHHHHHTSCCBSSSCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCEEEC--CCEEECCCEEEEEECCC
T ss_pred HHHhHHHHHHHHHHHhcCCCccCCCCccccHHHHHHHHHHHHHHHHcCCeEEEEecCcccccCCCccCCCcEEEEEECCC
Confidence 34567899999999999999832333 6799999999999999998865432 23 36899999543
Q ss_pred CCCCCcEEEEeecccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecc
Q 018435 87 NPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165 (356)
Q Consensus 87 ~~~~~~il~~aH~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~E 165 (356)
+.+|+|+|+|||||||+++ +.|+.+||++++ ++|++||||++|||++++++|.|++.|++.+..++++|.|+|+++|
T Consensus 100 -~~~~~i~l~aH~D~vp~~~~~~w~~~Pf~~~~-~~g~l~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~E 177 (485)
T 3dlj_A 100 -PTKGTVCFYGHLDVQPADRGDGWLTDPYVLTE-VDGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIKFIIEGME 177 (485)
T ss_dssp -TTSCEEEEEEECCBCCCCGGGTCSSCTTSCEE-ETTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCG
T ss_pred -CCCCEEEEEeeecCCCCCCcccCCCCCCccEE-ECCEEEecccccCcHHHHHHHHHHHHHHHhCCCCCccEEEEEEccc
Confidence 3458999999999999975 689999999998 8999999999999999999999999999998888999999999999
Q ss_pred ccCccccHHHHhcccc---ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCC--ccCCCCCCCHHHHHHHH
Q 018435 166 EIGGHDGAEKFADSHV---FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPG--HGAKLYDNSAMENLFKS 240 (356)
Q Consensus 166 E~g~~~G~~~~~~~~~---~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~--Hs~~p~~gnai~~~~~~ 240 (356)
|+|+ .|++.+++++. +.+.|.+++++.+...+ +...+.++.+|..+++|+++|+++ |++. ...|++.++..+
T Consensus 178 E~g~-~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~g~~g~~~~~i~v~G~~~~~H~~~-~g~~a~~~~~~l 254 (485)
T 3dlj_A 178 EAGS-VALEELVEKEKDRFFSGVDYIVISDNLWISQ-RKPAITYGTRGNSYFMVEVKCRDQDFHSGT-FGGILHEPMADL 254 (485)
T ss_dssp GGTT-TTHHHHHHHHTTTTSTTCCEEEECCCBCCC---CCEEEEEECEEEEEEEEEESCSSCEETTT-STTSSCCHHHHH
T ss_pred ccCC-ccHHHHHHhhhhhcccCCCEEEEcCCCccCC-CCeeEEEeccceEEEEEEEEECCCCCcCCC-CCccccCHHHHH
Confidence 9986 69999998753 44678888876432111 245788999999999999999999 9997 333777777777
Q ss_pred HHHHHcchhhh-------------------HHHHHh-ccc-----------c------------cCCceeeeEeeeecCC
Q 018435 241 IESVRRFRASQ-------------------FDLVKA-GLK-----------A------------EGEVVSVNMAFLKAGT 277 (356)
Q Consensus 241 ~~~i~~~~~~~-------------------~~~~~~-~~~-----------~------------~~~~~~v~~~~i~~g~ 277 (356)
++.|..+.... .+.+.. ++. . ....++++++.++||.
T Consensus 255 ~~~l~~l~~~~g~i~ipg~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~i~gG~ 334 (485)
T 3dlj_A 255 VALLGSLVDSSGHILVPGIYDEVVPLTEEEINTYKAIHLDLEEYRNSSRVEKFLFDTKEEILMHLWRYPSLSIHGIEGAF 334 (485)
T ss_dssp HHHHTTSBCTTSCBCSTTTTTTSCCCCHHHHHHHHTSCCCHHHHHHHHTCSCCSCSSHHHHHHHHHTSCEEEEEEEESSC
T ss_pred HHHHHhhCCCCCCEeCCCcccccCCCCHHHHHHHHhCCCCHHHHHHhcCCCcccccchHHHHHHHhcCCceEEEEEecCC
Confidence 77776654321 000000 000 0 0014789999999982
Q ss_pred CCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 278 PSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 278 ~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
. ++.+.|+||++|++++++|+.+.+..+.+.++|++++.
T Consensus 335 ~--gp~a~NVIP~~a~~~~diR~~~~~~~~~v~~~i~~~~~ 373 (485)
T 3dlj_A 335 D--EPGTKTVIPGRVIGKFSIRLVPHMNVSAVEKQVTRHLE 373 (485)
T ss_dssp C--SSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred c--CCCCCceeCCeeEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 1 11289999999999999999999999999999997776
|
| >2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-42 Score=325.89 Aligned_cols=269 Identities=20% Similarity=0.263 Sum_probs=219.1
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCc---ChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeec
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNP---DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHT 99 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~---~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~ 99 (356)
+....+++++++++|++|||+++.+ +|.++++||.++|+ |++++..+..++.+|+++ ++|+ |+|+|+|||
T Consensus 4 ~~~~~~~~~~~l~~l~~ips~s~~~~~~~e~~~~~~l~~~l~--G~~~~~~~~~~~~~~~~a-~~g~----~~i~l~~H~ 76 (369)
T 2f7v_A 4 MTDLLASTLEHLETLVSFDTRNPPRAIAAEGGIFDYLRAQLP--GFQVEVIDHGDGAVSLYA-VRGT----PKYLFNVHL 76 (369)
T ss_dssp CCHHHHHHHHHHHHHHHSCCBTTTTCCCSSSHHHHHHHTTCT--TCEEEEEECSTTCEEEEE-EESC----CSEEEEEEC
T ss_pred hhhhhHHHHHHHHHHhCCCCcCCCCCCccHHHHHHHHHHHhC--CCceEEEEcCCCceEEEE-EcCC----CeEEEEeee
Confidence 4445688999999999999987556 89999999999999 998877555456789999 9764 689999999
Q ss_pred ccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc-CccccHHHHhc
Q 018435 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI-GGHDGAEKFAD 178 (356)
Q Consensus 100 Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~-g~~~G~~~~~~ 178 (356)
||||.++ +|+.+||++.+ ++|++||||++|||++++++|++++. ++++|+|+|+++||. |+ .|++++++
T Consensus 77 D~vp~~~-~w~~~pf~~~~-~~g~l~grG~~D~k~g~a~~l~a~~~-------~~~~v~~~~~~~EE~~g~-~G~~~~~~ 146 (369)
T 2f7v_A 77 DTVPDSP-HWSADPHVMRR-TEDRVIGLGVCDIKGAAAALVAAANA-------GDGDAAFLFSSDEEANDP-RCIAAFLA 146 (369)
T ss_dssp CBCCCCS-SCSSCTTSCEE-CSSEEECTTTTTTHHHHHHHHHHHTT-------CCCCEEEEEESCTTSSSC-CHHHHHHT
T ss_pred cccCCCC-CCCCCCCCcEE-ECCEEEecccccccHHHHHHHHHHhc-------CCCCEEEEEEeCcccCCC-cCHHHHHh
Confidence 9999875 89999999998 89999999999999999999999876 578999999999998 64 79999998
Q ss_pred cccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCC-CC-CHHHHHHHHHHHHHcchhhhHHHHH
Q 018435 179 SHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLY-DN-SAMENLFKSIESVRRFRASQFDLVK 256 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~-~g-nai~~~~~~~~~i~~~~~~~~~~~~ 256 (356)
++. ..|.+++++ |+ ...++++.+|..+++|+++|+++|++.|+ .+ ||+..+++++..+..+... ..
T Consensus 147 ~~~--~~d~~i~~e-----~~-~~~i~~~~~g~~~~~i~v~G~~~Ha~~p~~~g~nAi~~~~~~i~~l~~~~~~----~~ 214 (369)
T 2f7v_A 147 RGL--PYDAVLVAE-----PT-MSEAVLAHRGISSVLMRFAGRAGHASGKQDPAASALHQAMRWGGKALDHVES----LA 214 (369)
T ss_dssp TCC--CCSEEEECC-----CS-TTCBBCCBCCEEEEEEEEECCCC------CTTSCHHHHHHHHHHHHHHHHHH----TT
T ss_pred cCC--CCCEEEECC-----CC-CCcceeecCceEEEEEEEeeeCcccCCCCcCCCCHHHHHHHHHHHHHhhhhh----hc
Confidence 754 567777654 33 24678899999999999999999999998 77 9999999999998765431 00
Q ss_pred hc--ccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEe
Q 018435 257 AG--LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVI 330 (356)
Q Consensus 257 ~~--~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 330 (356)
.. .+..+ ++++++.+++|. +.|+||++|++.+|+|+.+.++.+++.++|++.+.. .++++++..
T Consensus 215 ~~~~~~~~~--~~~~vg~i~gG~------~~NviP~~a~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~ 280 (369)
T 2f7v_A 215 HARFGGLTG--LRFNIGRVDGGI------KANMIAPAAELRFGFRPLPSMDVDGLLATFAGFADP--AAAHFEETF 280 (369)
T ss_dssp TCEETTEES--CEEEEEEEEECS------STTSCCSEEEEEEEEECCTTCCHHHHHHHHHHTCSS--CCSEEEEEE
T ss_pred ccccCcccC--CceEEEEeecCC------CCCcCCCceEEEEEEeeCCCCCHHHHHHHHHHHHHH--hcCceEEEe
Confidence 00 00011 689999999998 999999999999999999999999999999987652 246666654
|
| >2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-41 Score=331.57 Aligned_cols=305 Identities=16% Similarity=0.213 Sum_probs=237.7
Q ss_pred CChh-HHHHHHHhhhcccCCCCC-cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC
Q 018435 25 KSDD-SIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (356)
Q Consensus 25 ~~~~-~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv 102 (356)
...+ ++++++++|++|||.++. .++.++++||.++|+++|++++..+ .++.+||+++++|.+++.|+|+|+||||||
T Consensus 40 ~~~~~~~~~~l~~l~~ips~s~~e~~~~~~~~~l~~~l~~~G~~~~~~~-~~~~~~v~a~~~g~~~~~~~i~l~aH~D~v 118 (481)
T 2pok_A 40 DHVAQHYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDE-SYTAPFVMAHFKSSRPDAKTLIFYNHYDTV 118 (481)
T ss_dssp CHHHHHHHHHHHHHHHSCCCGGGCTTHHHHHHHHHHHHHHTTCEEEEEC-SSSSCEEEEEECCSSTTCCEEEEEEECCCC
T ss_pred hhhhHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHHHcCCEEEEec-CCCCcEEEEEecCCCCCCCeEEEEEeccCc
Confidence 3456 899999999999998532 2458999999999999999887533 245789999998753346899999999999
Q ss_pred CCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccc-
Q 018435 103 PSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH- 180 (356)
Q Consensus 103 p~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~- 180 (356)
|+++ ++|+.+||++.+ ++|++||||++|||++++++|+|++.|++.+..++++|+|+|+++||+|+ .|++.++++.
T Consensus 119 p~~~~~~w~~~pf~~~~-~~g~l~grG~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~-~g~~~~~~~~~ 196 (481)
T 2pok_A 119 PADGDQVWTEDPFTLSV-RNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNISFIMEGAEESAS-TDLDKYLEKHA 196 (481)
T ss_dssp CSCSSCCCSSCTTSCEE-ETTEEESTTTTTTHHHHHHHHHHHHHHHHTCSSCSSEEEEEEESCGGGTT-TTHHHHHHHHH
T ss_pred CCCCccccccCCCCcee-eCCeEEccccccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccCc-hhHHHHHHHhH
Confidence 9976 589999999998 89999999999999999999999999999855778999999999999986 6898888753
Q ss_pred -cccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecC--CccCCCCCC-CHHHHHHHHHHHHHcchh-------
Q 018435 181 -VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAP--GHGAKLYDN-SAMENLFKSIESVRRFRA------- 249 (356)
Q Consensus 181 -~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~--~Hs~~p~~g-nai~~~~~~~~~i~~~~~------- 249 (356)
.+++.+++++.+.+... .+.+.+.++++|..+++|+++|++ +||+.|+.+ ||+..+++++..|.++..
T Consensus 197 ~~~~~~d~~i~~~~~~~~-~~~~~i~~~~~G~~~~~i~v~G~~g~~Hss~p~~g~nAi~~~a~~i~~l~~~~~~i~i~g~ 275 (481)
T 2pok_A 197 DKLRGADLLVWEQGTKNA-LEQLEISGGNKGIVTFDAKVKSADVDIHSSYGGVVESAPWYLLQALQSLRAADGRILVEGL 275 (481)
T ss_dssp HHHTTCSEEECSCCBBCT-TSCEEEECCBCEEEEEEEEEECSSSCEEGGGTTTBCCHHHHHHHHHHHTBCTTSCBCCTTT
T ss_pred hhccCCCEEEECCCCccC-CCCeeEEEecceeEEEEEEEecCCCCccccCCCCCCCHHHHHHHHHHHhhCCCCceeccch
Confidence 23336766666543211 123578889999999999999999 899999888 999999999998876430
Q ss_pred ---------hhHHHHHh-cc-------------c----c--------cCCceeeeEeeeecCCCCCCCccccccCCeEEE
Q 018435 250 ---------SQFDLVKA-GL-------------K----A--------EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEA 294 (356)
Q Consensus 250 ---------~~~~~~~~-~~-------------~----~--------~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~ 294 (356)
.....+.. .+ . . ....++++++.++||.. +..+.|+||++|++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~t~~vg~i~gG~~--~~~~~NvIP~~a~~ 353 (481)
T 2pok_A 276 YEEVQEPNEREMALLETYGQRNPEEVSRIYGLELPLLQEERMAFLKRFFFDPALNIEGIQSGYQ--GQGVKTILPAEASA 353 (481)
T ss_dssp GGGSCCCCHHHHHHHHHHSCSCGGGHHHHHTCCSCCSSCSHHHHHHHHHHSCEEEEEEEEEECC--SSSCCCEECSEEEE
T ss_pred hhcCCCCCHHHHHHHHhcCcccHHHHHHhhCcccccccccchhHHHHHhhcCeEeEEeeecCCC--CCCCCeeccCeeEE
Confidence 00000000 00 0 0 00236899999998851 11268999999999
Q ss_pred EEEEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEEeecccc
Q 018435 295 GFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVVINSLSL 335 (356)
Q Consensus 295 ~~diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~ 335 (356)
.+++|+.+.++.+.+.++|++.+.. ...++++++....+++
T Consensus 354 ~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~~v~~~~~~p~~ 395 (481)
T 2pok_A 354 KLEVRLVPGLEPHDVLEKIRKQLDKNGFDKVELYYTLGEMSY 395 (481)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHTTCTTEEEEEEEEECCB
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEccCCCcc
Confidence 9999999999999999999987762 2257777776544444
|
| >1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=324.01 Aligned_cols=276 Identities=18% Similarity=0.231 Sum_probs=230.2
Q ss_pred ChhHHHHHHHhhhcccCCCCCc-ChhHHHHHHHHHHHHCCCceEEEeecC--CCceEEEEecCCCCCCCcEEEEeecccC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFAK--NKPLILLKWPGSNPQLPSILLNSHTDVV 102 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~-~e~~~~~~l~~~l~~~g~~~~~~~~~~--~~~nv~~~~~g~~~~~~~il~~aH~Dtv 102 (356)
..++++++|++|++|||+|... ++.++++||.++|+++|++++..+..+ ..+|++++++|++ .|+|+|+||||||
T Consensus 17 ~~~~~~~~l~~lv~i~s~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~v~a~~~g~~--~~~i~l~aH~D~v 94 (393)
T 1cg2_A 17 EQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGRG--GKNLLLMSHMDTV 94 (393)
T ss_dssp HHHHHHHHHHHHHTSCCBTTCHHHHHHHHHHHHHHHHHTTCEEEEEECSTTCCSEEEEEEEECSS--CCCEEEEEECCBS
T ss_pred hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEecCcCCCCCeEEEEECCCC--CceEEEEEecCcC
Confidence 4578999999999999985321 347899999999999999987654321 2469999998653 3899999999999
Q ss_pred CCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccc
Q 018435 103 PSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF 182 (356)
Q Consensus 103 p~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~ 182 (356)
|+. ++|+..||. + ++|++||||++|||++++++|++++.|++.+..++++|+|+|+++||.|+ .|++++++++.
T Consensus 95 p~~-~~~~~~Pf~--~-~~g~l~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~-~G~~~~~~~~~- 168 (393)
T 1cg2_A 95 YLK-GILAKAPFR--V-EGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGS-FGSRDLIQEEA- 168 (393)
T ss_dssp CCT-THHHHSCCE--E-ETTEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGTT-TTTHHHHHHHH-
T ss_pred CCC-CccccCCee--e-eCCEEEcCCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEEcccccCC-ccHHHHHHHHh-
Confidence 986 357777998 5 78999999999999999999999999999887778899999999999986 69999988643
Q ss_pred cCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccC-CCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhccc
Q 018435 183 NSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (356)
Q Consensus 183 ~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~-~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~ 260 (356)
...+++++++.+.. + ...++.+++|..+++|+++|+++|++ .|+.+ ||+..+++++..++.+...
T Consensus 169 ~~~d~~i~~e~~~~-~--~~~i~~~~~G~~~~~i~v~G~~~Hag~~p~~g~nAi~~~~~~i~~l~~~~~~---------- 235 (393)
T 1cg2_A 169 KLADYVLSFEPTSA-G--DEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDK---------- 235 (393)
T ss_dssp HHCSEEEECCCEET-T--SCEEESEECEEEEEEEEEECBCEETTSCGGGSBCHHHHHHHHHHHHGGGCBT----------
T ss_pred hcCCEEEEeCCCCC-C--CCcEEEeeeeeEEEEEEEEeeecccCCCcccCcCHHHHHHHHHHHHHhhhCc----------
Confidence 24677787764320 1 23788899999999999999999996 68888 9999999999999876432
Q ss_pred ccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEEe
Q 018435 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVVI 330 (356)
Q Consensus 261 ~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~ 330 (356)
....+++++.++||. +.|+||++|++.+++|+.+.++.+.+.++|++.+.. ...++++++..
T Consensus 236 --~~~~~~~v~~i~gG~------~~NvIP~~a~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 298 (393)
T 1cg2_A 236 --AKNLRFNWTIAKAGN------VSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEADVKVIV 298 (393)
T ss_dssp --TTTEEEEEEEEEECS------STTEECSEEEEEEEEEESSHHHHHHHHHHHHHHHTSCSSTTCEEEEEE
T ss_pred --ccCceEEEEEEeCCC------CCCEECcccEEEEEEeeCChhhHHHHHHHHHHHHhcccCCCcEEEEEe
Confidence 134789999999998 999999999999999999999999999999988762 34677777664
|
| >3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=328.93 Aligned_cols=281 Identities=16% Similarity=0.104 Sum_probs=216.2
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEee------------------------------
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF------------------------------ 72 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~------------------------------ 72 (356)
++...+++++++++|+++|+. +.+|.+++++|.++|+++|++++....
T Consensus 9 ~~~~~~~~~~~~~~lh~~Pe~--~~~E~~t~~~i~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 86 (445)
T 3io1_A 9 LRQLAPSMTQWRRDFHLHAES--GWLEFRTASKVADILDGLGYQLALGRDVIDADSRMGLPDEETLARAFERAREQGAPE 86 (445)
T ss_dssp HHTTHHHHHHHHHHHHHTCCC--TTCCHHHHHHHHHHHHHTTCEEEEGGGTSCSTTCCSCCCHHHHHHHHHHHHTTTCCT
T ss_pred HHHHHHHHHHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHCCCeEEecccccccccccccccchhhhhhhhhhccccccc
Confidence 345678999999999999997 679999999999999999998765210
Q ss_pred -----c-CCCceEEEEecCCCCCCCcEEEEeecccCCCCC-CCCCCCCCCe---eeCCCCeEEecCcccchHHHHHHHHH
Q 018435 73 -----A-KNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGA---HLDSQGNIFARGSQDMKCVGMQYLEA 142 (356)
Q Consensus 73 -----~-~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~-~~w~~~P~~~---~~~~~g~~~GrG~~D~k~~~a~~l~a 142 (356)
. .+.+|++++++|.++ +|+|+|+||||+||+.+ .+|+++||.. .. .+|++||||+ +++++++|.+
T Consensus 87 ~~~~~~~~~~~~vva~~~~~~~-g~~i~l~ah~Davp~~e~~~~~~~Pf~~~~~s~-~~G~~h~cGh---d~~~a~~l~a 161 (445)
T 3io1_A 87 RWLPAFEGGFAGVVATLDTGRP-GPTLAFRVDMDALDLNEQHDDSHRPHRDHFASC-NAGMMHACGH---DGHTAIGLGL 161 (445)
T ss_dssp TTGGGGTTTCCCEEEEEECSSC-CCEEEEEEECCCCCC--------------------------CTT---CTHHHHHHHH
T ss_pred cccccccCCCCEEEEEEeCCCC-CCEEEEEEecCCcCCCCCCCCCcCccccccccC-CCCceEecCc---hHHHHHHHHH
Confidence 0 156899999987654 48999999999999976 6899999986 34 7899999997 5899999999
Q ss_pred HHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeee---eEEEEEEEE
Q 018435 143 IRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC---PWWLVIKAR 219 (356)
Q Consensus 143 ~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G---~~~~~v~~~ 219 (356)
++.|++.+..++++|+|+|+++||++ .|++++++++.++++|.+++++.+...|.+ .+.++.+| ..+++|+++
T Consensus 162 a~~L~~~~~~~~g~v~l~f~p~EE~~--~Ga~~~i~~g~~~~~d~~~~~h~~~~~~~g--~i~~~~~g~~a~~~~~i~v~ 237 (445)
T 3io1_A 162 AHVLKQYAAQLNGVIKLIFQPAEEGT--RGARAMVAAGVVDDVDYFTAIHIGTGVPAG--TVVCGGDNFMATTKFDVQFS 237 (445)
T ss_dssp HHHHHHTGGGCCSEEEEEEESCTTTT--CHHHHHHHTTTTTTCSEEEEEEEEEEEETT--BEESCCCCBCEEEEEEEEEE
T ss_pred HHHHHhCcCcCCceEEEEEecccccc--chHHHHHHcCCccccceeEEEeccCCCCCC--eEEEecCCeeEEEEEEEEEE
Confidence 99999887778999999999999954 599999998878788988988764333443 44554443 579999999
Q ss_pred ecCCcc-CCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEE
Q 018435 220 GAPGHG-AKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFD 297 (356)
Q Consensus 220 G~~~Hs-~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~d 297 (356)
|+++|+ +.|+.+ ||+.++++++..|+.+... ..+.++++++.++||. +.|+||++|++.++
T Consensus 238 Gk~~HaGs~P~~g~nAi~~aa~~i~~l~~l~~~-----------~~~~~~~~vg~i~gG~------~~NvIP~~a~~~~~ 300 (445)
T 3io1_A 238 GVAAHAGGKPEDGRNALLAAAQAALGLHAIPPH-----------SAGASRVNVGVMQAGT------GRNVVPSSALLKVE 300 (445)
T ss_dssp CCCSSTTCCGGGCCCHHHHHHHHHHHHHTCCCB-----------TTBCEEEEEEEEEECS------CTTSCCCEEEEEEE
T ss_pred eecCCCCCCCcCCcCHHHHHHHHHHHHHHHHhh-----------cCCCeEEEEEEEecCC------CCceeCCeEEEEEE
Confidence 999999 689988 9999999999999887431 1234789999999997 99999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEee
Q 018435 298 IRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVIN 331 (356)
Q Consensus 298 iR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~ 331 (356)
+|+.+.++.+.+.++|++++.. ...++++++...
T Consensus 301 iR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~~i~~~ 336 (445)
T 3io1_A 301 TRGESEAINQYVFERAQHVVAGAAAMYEARYELRMM 336 (445)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 9999999999999999877652 346777776653
|
| >2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=326.39 Aligned_cols=288 Identities=16% Similarity=0.258 Sum_probs=228.4
Q ss_pred CCChhHHHHHHHhhhcccCCCCCc----ChhHHHHHHHHHHHHCCCceEEEeec-----CCC-----ceEEEEecCCCCC
Q 018435 24 AKSDDSIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFA-----KNK-----PLILLKWPGSNPQ 89 (356)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~~----~e~~~~~~l~~~l~~~g~~~~~~~~~-----~~~-----~nv~~~~~g~~~~ 89 (356)
+...+++++++++|++|||+++.. ++.++++||.++|+++|++++..... .+. +||++.+++. +.
T Consensus 16 ~~~~~~~~~~l~~l~~~ps~s~~e~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~v~a~~~~~-~~ 94 (479)
T 2zog_A 16 DENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEIPLPPILLGKLGSD-PQ 94 (479)
T ss_dssp HHTHHHHHHHHHHHHHSCCBTTCGGGHHHHHHHHHHHHHHHHHTTCEEEEECCCEEECTTSCEEECCCEEEEEECCC-TT
T ss_pred HHhHHHHHHHHHHHhcCCCccCCcccchHHHHHHHHHHHHHHHcCCeEEEeeccccccCCCcccCCCCEEEEEecCC-CC
Confidence 445688999999999999985322 24799999999999999988764421 233 8999999654 34
Q ss_pred CCcEEEEeecccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccC
Q 018435 90 LPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168 (356)
Q Consensus 90 ~~~il~~aH~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g 168 (356)
.|+|+|+|||||||+++ ++|+.+||++.+ ++|++||||+.|||++++++|+|++.|++.+..++++|+|+|+++||.|
T Consensus 95 ~~~i~l~aH~D~vp~~~~~~w~~~Pf~~~~-~~g~l~grGa~D~K~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g 173 (479)
T 2zog_A 95 KKTVCIYGHLDVQPAALEDGWDSEPFTLVE-REGKLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLRFCLEGMEESG 173 (479)
T ss_dssp SCEEEEEEECCBCCCCGGGTCSSCTTSCEE-ETTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGT
T ss_pred CCeEEEEEecCCCCCCccccCcCCCCccee-ECCEEEeeccccChHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccccC
Confidence 58999999999999975 689999999998 8999999999999999999999999999998888899999999999998
Q ss_pred ccccHHHHhccc---cccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecC--CccCCCCCCCHHHHHHHHHHH
Q 018435 169 GHDGAEKFADSH---VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAP--GHGAKLYDNSAMENLFKSIES 243 (356)
Q Consensus 169 ~~~G~~~~~~~~---~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~--~Hs~~p~~gnai~~~~~~~~~ 243 (356)
+ .|++.++++. .+.+.+.+++++.+...+ +...++++++|..+++|+++|++ +||+.+ ..||+.++++++..
T Consensus 174 ~-~Ga~~~~~~~~~~~~~~~d~~i~~e~~~~~~-~~~~i~~~~~G~~~~~i~v~G~~~~~Hs~~~-g~~ai~~~~~~i~~ 250 (479)
T 2zog_A 174 S-EGLDELIFAQKDKFFKDVDYVCISDNYWLGK-NKPCITYGLRGICYFFIEVECSDKDLHSGVY-GGSVHEAMTDLISL 250 (479)
T ss_dssp C-TTHHHHHHHTTTTTTTTCCEEEECCCBCSSS-SSCEEEEEECEEEEEEEEEECCSSCEEHHHH-TTTSCCHHHHHHHH
T ss_pred C-ccHHHHHHhhhhhhcccCCEEEEeCCCcCCC-CCeEEEEecceEEEEEEEEEeCCCCCccCCC-CCCccCHHHHHHHH
Confidence 6 6999999864 233567777776543222 24578899999999999999999 999985 34899999999888
Q ss_pred HHcchhhh-------------------H----------HHHHhcccc--------------cCCceeeeEeeeecCCCCC
Q 018435 244 VRRFRASQ-------------------F----------DLVKAGLKA--------------EGEVVSVNMAFLKAGTPSP 280 (356)
Q Consensus 244 i~~~~~~~-------------------~----------~~~~~~~~~--------------~~~~~~v~~~~i~~g~~~~ 280 (356)
++++.... . +.+...+.. ....++++++.+++|..
T Consensus 251 l~~l~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~i~gg~~-- 328 (479)
T 2zog_A 251 MGCLVDKKGKILIPGINDAVAPVTDEEHALYDHIDFDMEEFAKDVGAETLLHSCKKDILMHRWRYPSLSLHGIEGAFS-- 328 (479)
T ss_dssp HTTSBCTTSCBCSTTTTTTSCCCCHHHHHHTSSCCCCHHHHHHHHTCSSCSCSSHHHHHHHHHTSCEEEEEEEESSCC--
T ss_pred HHhcCCCCCCEecCchhccCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccccchHHHHHHhhcCCCeEEeeeecCCc--
Confidence 87654320 0 000000000 00136889999998821
Q ss_pred CCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 281 NGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 281 ~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
++.+.|+||++|++.+++|+.|.++.+.+.++|++.+.
T Consensus 329 g~~~~NvIP~~a~~~~~~R~~~~~~~~~v~~~i~~~~~ 366 (479)
T 2zog_A 329 GSGAKTVIPRKVVGKFSIRLVPDMIPEVVSEQVSSYLS 366 (479)
T ss_dssp SSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCccccCCceEEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 11289999999999999999999999999999987665
|
| >2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=320.73 Aligned_cols=259 Identities=20% Similarity=0.253 Sum_probs=218.3
Q ss_pred hhHHHHHHHhhhcccCCCCC-cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCC-CCCCCcEEEEeecccCCC
Q 018435 27 DDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS-NPQLPSILLNSHTDVVPS 104 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~-~~~~~~il~~aH~Dtvp~ 104 (356)
.+++++++++|++|||+++. ++|.++++||.++|+++|++++.. .+|+++.++|+ +.+.|+|+|+|||||||.
T Consensus 5 ~~~~~~~l~~l~~ips~s~~~~~e~~~~~~l~~~l~~~G~~~~~~-----~~~~~~~~~~~~~~~~~~i~l~aH~D~vp~ 79 (364)
T 2rb7_A 5 MQHIVELTSDLIRFPSMHSRPEQISRCAGFIMDWCAQNGIHAERM-----DHDGIPSVMVLPEKGRAGLLLMAHIDVVDA 79 (364)
T ss_dssp HHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTTCCCEEE-----EETTEEEEEECSBTTEEEEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHcCCeEEEe-----cCCCceEEEEEcCCCCCeEEEECccCcCCC
Confidence 47899999999999998533 578899999999999999988763 25678888652 223589999999999975
Q ss_pred CCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCC---ccc--EEEEEeeccccCccccHHHHhcc
Q 018435 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP---VRS--VYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 105 ~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~---~~~--i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
+.+||.+.+ ++|++||||++|||++++++|++++.|++.+..+ +++ |+|+|+++||.|+..|+++++++
T Consensus 80 -----~~~p~~~~~-~~g~~~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~~g~~~v~~~~~~~EE~~g~~G~~~~~~~ 153 (364)
T 2rb7_A 80 -----EDDLFVPRV-ENDRLYGRGANDDKYAVALGLVMFRDRLNALKAAGRSQKDMALGLLITGDEEIGGMNGAAKALPL 153 (364)
T ss_dssp -----CGGGGSCEE-ETTEEESTTTTTTHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEESCGGGTSTTTHHHHGGG
T ss_pred -----CCCCCccEE-ECCEEEecccccccHHHHHHHHHHHHHHHhCCCCcccCCCccEEEEEEeccccCchhhHHHHHhc
Confidence 478999998 8999999999999999999999999999876555 568 99999999998555799999986
Q ss_pred ccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhc
Q 018435 180 HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAG 258 (356)
Q Consensus 180 ~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~ 258 (356)
. +.+++++++.+ +|.+ ++++++|..+++|+++|+++|++.|+.+ ||+..+++++..++.+.. ++
T Consensus 154 ~---~~d~~i~~d~~--~p~~---i~~~~~G~~~~~i~v~G~~~Ha~~P~~g~nAi~~~~~~i~~l~~~~~-------~~ 218 (364)
T 2rb7_A 154 I---RADYVVALDGG--NPQQ---VITKEKGIIDIKLTCTGKAAHGARPWMGVNAVDLLMEDYTRLKTLFA-------EE 218 (364)
T ss_dssp C---EEEEEEECSSS--BTTE---EEEEECEEEEEEEEEECBCEETTSGGGSBCHHHHHHHHHHHHHTTSC-------CC
T ss_pred C---CCCEEEEccCC--cccc---eEEEeeeEEEEEEEEEeecccCCCCCCCcCHHHHHHHHHHHHHhhcc-------ch
Confidence 5 45677776643 3543 8999999999999999999999999888 999999999999987521 00
Q ss_pred ccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 259 ~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
.. ..+.++++++.++||. +.|+||++|++.+|+|+.+.++.+++.++|++.+.
T Consensus 219 ~~-~~~~~~~~vg~i~gG~------~~NviP~~a~~~~~iR~~~~~~~~~i~~~i~~~~~ 271 (364)
T 2rb7_A 219 NE-DHWHRTVNLGRIRAGE------STNKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVS 271 (364)
T ss_dssp CT-TCCSCEEEEEEEEECS------CTTEECSEEEEEEEEEECTTSCHHHHHHHHHHHCS
T ss_pred hh-cCCCceEEEEEEecCC------cCcccCcceEEEEEEeeCCCCCHHHHHHHHHHHhh
Confidence 00 0034799999999998 99999999999999999999999999999998775
|
| >3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=310.71 Aligned_cols=274 Identities=18% Similarity=0.234 Sum_probs=223.5
Q ss_pred CChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCc-eEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCC
Q 018435 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP 103 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~-~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp 103 (356)
...+++++++++|+++||+ +++|.++++||.++|+++|++ ++... ..+|+++.+++. +.|+|+|+|||||||
T Consensus 10 ~~~~~~~~~~~~l~~~ps~--s~~e~~~~~~l~~~l~~~G~~~~~~~~---~~~~~~a~~~~~--~~~~v~l~~H~D~vp 82 (369)
T 3tx8_A 10 DLLGDPIVLTQRLVDIPSP--SGQEKQIADEIEDALRNLNLPGVEVFR---FNNNVLARTNRG--LASRVMLAGHIDTVP 82 (369)
T ss_dssp CCCSCHHHHHHHHHSSCCB--TTCTHHHHHHHHHHHHTTTCTTCEEEE---ETTEEEEECCCC--CSCEEEEEEECCBSC
T ss_pred ccHHHHHHHHHHHhcCCCC--CccHHHHHHHHHHHHHhcCCCCcEEec---cCCcEEEEecCC--CCCeEEEEcccCccC
Confidence 3457899999999999997 578999999999999999873 44322 246899999765 358999999999999
Q ss_pred CCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCcc-ccHHHHhccc-c
Q 018435 104 SEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH-DGAEKFADSH-V 181 (356)
Q Consensus 104 ~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~-~G~~~~~~~~-~ 181 (356)
+++ ||.+.+ ++|++||||++|||++++++|+|++.|++. ..++++|+|+|+++||.|+. .|++++++.+ .
T Consensus 83 ~~~------~~~~~~-~~g~~~g~G~~D~K~~~a~~l~a~~~l~~~-~~~~~~v~~~~~~~EE~g~~~~G~~~~~~~~~~ 154 (369)
T 3tx8_A 83 IAD------NLPSRV-EDGIMYGCGTVDMKSGLAVYLHTFATLATS-TELKHDLTLIAYECEEVADHLNGLGHIRDEHPE 154 (369)
T ss_dssp CCS------CCSCEE-CSSEEESSSTTTTHHHHHHHHHHHHHHTSC-TTCCSEEEEEEECCCSSCTTSCHHHHHHHHCGG
T ss_pred CCC------CCCCeE-ECCEEEcCCcccchHHHHHHHHHHHHHHhh-cCCCccEEEEEEeccccCcccccHHHHHHhccc
Confidence 874 677778 899999999999999999999999999875 36789999999999999852 4899998864 1
Q ss_pred ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhccc
Q 018435 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (356)
Q Consensus 182 ~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~ 260 (356)
..+.+++++.+ |+. ..++++.+|..+++|+++|+++|++.|+.+ ||+..+++++..++++..... ...
T Consensus 155 ~~~~~~~i~~e-----p~~-~~i~~~~~G~~~~~i~v~G~~~Ha~~p~~g~nAi~~~a~~i~~l~~~~~~~~-----~~~ 223 (369)
T 3tx8_A 155 WLAADLALLGE-----PTG-GWIEAGCQGNLRIKVTAHGVRAHSARSWLGDNAMHKLSPIISKVAAYKAAEV-----NID 223 (369)
T ss_dssp GGCCSEEEECC-----CCT-TCEEESBCEEEEEEEEEECBCCBTTSGGGSBCTGGGGHHHHHHHHHCCCCEE-----EET
T ss_pred ccCCCEEEEeC-----CCC-CceeeecceEEEEEEEEeeeccccCCCCcCcCHHHHHHHHHHHHHhhccccc-----ccC
Confidence 22456666654 432 478899999999999999999999999988 999999999999987643210 000
Q ss_pred ccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEEe
Q 018435 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVVI 330 (356)
Q Consensus 261 ~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~ 330 (356)
......+++++.+++|. +.|+||++|++.+|+|+.+.++.+++.++|++.+.. ...++++++..
T Consensus 224 ~~~~~~~~~vg~i~gG~------~~NvIP~~a~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~g~~~~~~~ 288 (369)
T 3tx8_A 224 GLTYREGLNIVFCESGV------ANNVIPDLAWMNLNFRFAPNRDLNEAIEHVVETLELDGQDGIEWAVED 288 (369)
T ss_dssp TEEEECEEEEEEEEECS------BTTBCCSEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSTTEEEEEEE
T ss_pred CcccCceEEEEEEECCC------CCccccCcEEEEEEEecCCCCCHHHHHHHHHHHHHhcccCCeEEEEEe
Confidence 01114689999999987 999999999999999999999999999999987762 13577777753
|
| >1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=321.44 Aligned_cols=276 Identities=16% Similarity=0.161 Sum_probs=212.9
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
..+++++++++|++|||. +++|.++++||.++|+++|++++.. ..+.+|+++.++|+++ .|+|+|+|||||||++
T Consensus 30 ~~~~~i~~~~~l~~ips~--s~~e~~~~~~l~~~l~~~G~~v~~~--~~~~~nv~a~~~g~~~-~~~i~l~~H~D~vp~~ 104 (404)
T 1ysj_A 30 FHTRLINMRRDLHEHPEL--SFQEVETTKKIRRWLEEEQIEILDV--PQLKTGVIAEIKGRED-GPVIAIRADIDALPIQ 104 (404)
T ss_dssp HHHHHHHHHHHHHHSCCC--TTCCHHHHHHHHHHHHHTTCEECCC--TTCSSCEEEEEECSSC-CCEEEEEEECCCBSCC
T ss_pred HHHHHHHHHHHHHhcCCC--CCChHHHHHHHHHHHHHcCCceEEe--ccCCceEEEEEeCCCC-CCEEEEEEecccccCC
Confidence 457899999999999997 5689999999999999999987542 1246799999987643 4899999999999986
Q ss_pred CCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCC
Q 018435 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (356)
Q Consensus 106 ~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (356)
+ |+.+||++. .+|++||||+ |++++++|++++.|++.+..++++|+|+|+++||+ + .|++++++++.++..
T Consensus 105 ~--~~~~Pf~~~--~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~-~-~G~~~~~~~g~~~~~ 175 (404)
T 1ysj_A 105 E--QTNLPFASK--VDGTMHACGH---DFHTASIIGTAMLLNQRRAELKGTVRFIFQPAEEI-A-AGARKVLEAGVLNGV 175 (404)
T ss_dssp C--CCCCTTCCS--STTCBCTTSH---HHHHHHHHHHHHHHHTCGGGCSSEEEEEEESCTTT-T-CHHHHHHHTTTTTTE
T ss_pred C--CCCCCcccC--CCCceEcCcC---hHHHHHHHHHHHHHHhccccCCceEEEEEeccccc-c-hhHHHHHhcCCCcCC
Confidence 3 999999986 6899999995 89999999999999987767889999999999998 4 599999987666556
Q ss_pred ceEEEEecCccCcCCcceeEEe--eeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhccccc
Q 018435 186 NVGIVLDEGLASTTEDYRAFYA--ERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (356)
Q Consensus 186 ~~~~~~~~g~~~p~~~~~i~~~--~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 262 (356)
+..+.++.....+.+.+.+..| .+|..+++|+++|+++|++.|+.+ ||+..+++++..+.++.....+ .
T Consensus 176 d~~i~~h~ep~~~~g~v~~~~g~~~~g~~~~~i~v~G~~~Has~P~~g~nAi~~~~~~i~~l~~~~~~~~~--------~ 247 (404)
T 1ysj_A 176 SAIFGMHNKPDLPVGTIGVKEGPLMASVDRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVSRNIS--------S 247 (404)
T ss_dssp EEEEEEEEETTSCTTEEEECSEEEECCEEEEEEEEECC--------CCCCHHHHHHHHHHHHC-----------------
T ss_pred CEEEEEecCCCCCCceEEeccChhhcccceEEEEEEccCccccCcccCCCHHHHHHHHHHHHHHHHhhhcC--------C
Confidence 6666664321122222223334 678999999999999999999988 9999999999998765321111 1
Q ss_pred CCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 263 ~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
...++++++.++||. +.|+||++|++.+|+|+.+.++.+++.++|++.+.. ...++++++.
T Consensus 248 ~~~~~~~vg~i~gG~------~~NvIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~~g~~~~~~ 310 (404)
T 1ysj_A 248 LQNAVVSITRVQAGT------SWNVIPDQAEMEGTVRTFQKEARQAVPEHMRRVAEGIAAGYGAQAEFK 310 (404)
T ss_dssp --CCEEEEEEEEECS------CSSSCCSEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEEEEEEcCC------CCceecCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 124689999999998 999999999999999999999999999999877652 2456666654
|
| >3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=307.85 Aligned_cols=269 Identities=18% Similarity=0.191 Sum_probs=222.8
Q ss_pred CChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEee----cCCCceEEEEecCCCCCCCcEEEEeecc
Q 018435 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF----AKNKPLILLKWPGSNPQLPSILLNSHTD 100 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~----~~~~~nv~~~~~g~~~~~~~il~~aH~D 100 (356)
.+.+++++++++|+++||. +++|.++++||.++|+++|++++.... ..+.+|+++.++|++++.|+|+|+||||
T Consensus 3 ~~~~~~~~~l~~l~~~ps~--s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~~nv~a~~~g~~~~~~~v~l~aH~D 80 (373)
T 3gb0_A 3 INQERLVNEFMELVQVDSE--TKFEAEICKVLTKKFTDLGVEVFEDDTMAVTGHGAGNLICTLPATKDGVDTIYFTSHMD 80 (373)
T ss_dssp SCHHHHHHHHHHHHTSCCB--TTCCHHHHHHHHHHHHHTTCEEEECSCHHHHCCSSCCEEEEECCSSTTCCCEEEEEECC
T ss_pred CCHHHHHHHHHHHhcccCC--CccHHHHHHHHHHHHHHCCCEEEEeccccccCCCceeEEEEecCCCCCCCEEEEEEECc
Confidence 3568899999999999997 678999999999999999998875221 1246899999988644568999999999
Q ss_pred cCCCCCCCCCCCCCCeeeCCCCeEEecCc----ccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHH
Q 018435 101 VVPSEPSKWSHHPFGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (356)
Q Consensus 101 tvp~~~~~w~~~P~~~~~~~~g~~~GrG~----~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (356)
+||+++ ||++.+ ++|++||||+ +|||++++++|.+++.|++.+. ++++|.|+|+++||.|+ .|++.+
T Consensus 81 ~vp~~~------~~~p~~-~~g~~~g~G~~~~g~D~k~g~a~~l~a~~~l~~~~~-~~~~v~~~~~~~EE~g~-~Ga~~~ 151 (373)
T 3gb0_A 81 TVVPGN------GIKPSI-KDGYIVSDGTTILGADDKAGLASMFEAIRVLKEKNI-PHGTIEFIITVGEESGL-VGAKAL 151 (373)
T ss_dssp BCSSCS------SCCCEE-ETTEEECCSSSCCCHHHHHHHHHHHHHHHHHHHTTC-CCCCEEEEEESCGGGTS-HHHHHS
T ss_pred ccCCCC------CcCcEE-ECCEEECCCccccCcccHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccccCc-hhhhhh
Confidence 999863 455667 8999999999 7999999999999999998875 68999999999999985 699988
Q ss_pred hccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccC-CCCCC-CHHHHHHHHHHHHHcchhhhHHH
Q 018435 177 ADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDL 254 (356)
Q Consensus 177 ~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~-~p~~g-nai~~~~~~~~~i~~~~~~~~~~ 254 (356)
.... + ..+++++++.+. + ...+.++.+|..+++|+++|+++|++ .|+.+ ||+..+++++..++..+
T Consensus 152 ~~~~-~-~~~~~~~~~~~~--~--~g~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nai~~~~~~i~~l~~~~------ 219 (373)
T 3gb0_A 152 DRER-I-TAKYGYALDSDG--K--VGEIVVAAPTQAKVNAIIRGKTAHAGVAPEKGVSAITIAAKAIAKMPLGR------ 219 (373)
T ss_dssp CGGG-C-CCSEEEEEEECS--C--TTEEEEEECEEEEEEEEEECBCCBTTTCGGGSBCHHHHHHHHHTTSCCEE------
T ss_pred CHHh-c-CCCEEEEEcCCC--C--CCeEEEcCCCcEEEEEEEEeEecCCCCChhhCcCHHHHHHHHHHhccccc------
Confidence 6532 2 457788887542 2 23788899999999999999999999 79999 99999999988775421
Q ss_pred HHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 255 VKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 255 ~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
.....+++++.+++|. +.|+||++|++.+|+|+.+.++.+++.++|++.+.. ...++++++.
T Consensus 220 -------~~~~~~~~vg~i~gG~------~~Nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~g~~~~i~ 283 (373)
T 3gb0_A 220 -------IDSETTANIGRFEGGT------QTNIVCDHVQIFAEARSLINEKMEAQVAKMKEAFETTAKEMGGHADVE 283 (373)
T ss_dssp -------EETTEEEEEEEEEECS------CTTBCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -------CCCccccceeEEecCc------ccccccceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 1123688999999997 999999999999999999999999999999876652 3356666554
|
| >1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-40 Score=318.21 Aligned_cols=271 Identities=17% Similarity=0.145 Sum_probs=209.4
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCCC
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPS 107 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~ 107 (356)
+++++++++|++|||+ +++|.++++||.++|+++|++++... +.+|++++++|.++ |+|+|+|||||||+++
T Consensus 28 ~~~i~~~~~l~~ips~--s~~e~~~~~~l~~~l~~~G~~v~~~~---~~~~l~a~~~~~~~--~~i~l~aH~D~vp~~~- 99 (418)
T 1xmb_A 28 DWMVKIRRKIHENPEL--GYEELETSKLIRSELELIGIKYRYPV---AITGVIGYIGTGEP--PFVALRADMDALPIQE- 99 (418)
T ss_dssp HHHHHHHHHHHHSCCC--TTCCHHHHHHHHHHHHHHTCCEEEEE---TTTEEEEEEESSSS--CEEEEEEECCCBSCCC-
T ss_pred HHHHHHHHHHHhCCCC--CCChHHHHHHHHHHHHHcCCeeEecc---CCcEEEEEEcCCCC--CEEEEEecccccCCCC-
Confidence 7899999999999997 56899999999999999999887522 46899999987543 7999999999999864
Q ss_pred CCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCce
Q 018435 108 KWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNV 187 (356)
Q Consensus 108 ~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~ 187 (356)
|+.+||++. ++|++||||+ |++++++|+|++.|++.+..++++|+|+|+++|| |+ .|++++++++.+++.|.
T Consensus 100 -~~~~pf~~~--~~g~~~g~G~---d~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE-g~-~G~~~~~~~g~~~~~d~ 171 (418)
T 1xmb_A 100 -GVEWEHKSK--IAGKMHACGH---DGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEE-GL-SGAKKMREEGALKNVEA 171 (418)
T ss_dssp -CCCSTTCCS--STTCBCCSSH---HHHHHHHHHHHHHHHHTGGGCSSEEEEEEECCTT-TT-CHHHHHHHTTTTTTEEE
T ss_pred -CCCCCcccC--CCCceEeCCc---hHHHHHHHHHHHHHHhccccCCceEEEEEecccc-cc-ccHHHHHHcCCcCCCCE
Confidence 999999974 7899999996 6999999999999999887789999999999999 75 69999998776655677
Q ss_pred EEEEecCccCcCCc--ceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCC
Q 018435 188 GIVLDEGLASTTED--YRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGE 264 (356)
Q Consensus 188 ~~~~~~g~~~p~~~--~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 264 (356)
+++++.....|.+. ..+..+++|..+++|+++|+++|++.|+.+ ||+.++++++..++.+..... + ...
T Consensus 172 ~i~~~~~~~~~~g~~~~~~~~~~~g~~~~~i~v~G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~----~----~~~ 243 (418)
T 1xmb_A 172 IFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRET----D----PLD 243 (418)
T ss_dssp EEEEEEEEEEETTCEEECSEEEECEEEEEEEEEEEC---------CCHHHHHHHHHHHHHHTTCBCCS----S----GGG
T ss_pred EEEEecCCCCCCceeEeeeccccccceeEEEEEEecCcccCCCccCCCHHHHHHHHHHHHHHHHhccc----C----CCC
Confidence 77765432245443 245668899999999999999999999998 999999999999987642110 0 112
Q ss_pred ceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 265 ~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
.++++++.++||. +.|+||++|++.+++|+.+ +.+++.++|++.+.. ...++++++..
T Consensus 244 ~~t~~vg~i~gG~------~~NvIP~~a~~~~diR~~~--~~~~i~~~i~~~~~~~a~~~g~~~~~~~ 303 (418)
T 1xmb_A 244 SKVVTVSKVNGGN------AFNVIPDSITIGGTLRAFT--GFTQLQQRVKEVITKQAAVHRCNASVNL 303 (418)
T ss_dssp CEEEEEEEEC--------------CCEEEEEEEEEESS--CHHHHHHHHHHHHHHHHHHTTEEEEEES
T ss_pred CcEEEEEEEEecC------cCCcCCCeEEEEEEEccCc--HHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 3689999999998 9999999999999999999 899999999877652 24677777764
|
| >3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-39 Score=307.63 Aligned_cols=276 Identities=16% Similarity=0.235 Sum_probs=223.8
Q ss_pred hhcCCCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEee----cCCCceEEEEecCC--CCCCCc
Q 018435 19 IFSSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF----AKNKPLILLKWPGS--NPQLPS 92 (356)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~----~~~~~nv~~~~~g~--~~~~~~ 92 (356)
....+....+++++++++|++|||. +++|.++++||.++|+++|++++.... ..+.+|+++.++|+ +++.|+
T Consensus 15 ~~~~~~~~~~~~~~~l~~L~~ips~--s~~E~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~~nvia~~~g~~~~~~~~~ 92 (396)
T 3rza_A 15 LYFQGMINEQRLLNTFLELVQIDSE--TGNESTIQPILKEKFIALGLDVKEDEAAKHPKLGANNLVCTMNSTIEEGEVPK 92 (396)
T ss_dssp ----CCSCHHHHHHHHHHHHTSCCB--TTCTTTHHHHHHHHHHHTTCEEEECSGGGSTTCSSCCEEEEECCCCC---CCC
T ss_pred eeEEEeecHHHHHHHHHHHeecCCC--CcCHHHHHHHHHHHHHHCCCEEEEeccccccCCCCceEEEEECCcCCCCCCCe
Confidence 3445677889999999999999997 678999999999999999998875221 12468999999886 234589
Q ss_pred EEEEeecccCCCCCCCCCCCCCCeeeCCC-CeEEecCc----ccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQ-GNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 93 il~~aH~Dtvp~~~~~w~~~P~~~~~~~~-g~~~GrG~----~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
|+|+|||||||+++ +|++.+ ++ |++||||+ +|||++++++|.+++.|++.+. ++++|.|+|+++||.
T Consensus 93 i~l~aH~D~vp~g~------~~~p~~-~~~g~~~g~G~~~~g~D~k~g~a~~l~a~~~l~~~~~-~~~~v~~~~~~~EE~ 164 (396)
T 3rza_A 93 LYLTSHMDTVVPAI------NVKPIV-KDDGYIYSDGTTILGADDKAGLAAMLEVLQVIKEQQI-PHGQIQFVITVGEES 164 (396)
T ss_dssp EEEEEECCBCSSCS------SCCCEE-CTTSEEECCSSSCCCHHHHHHHHHHHHHHHHHHHHTC-CCCCEEEEEESCGGG
T ss_pred EEEEEECCccCCCC------CcceEE-ecCCEEECCCccccCcccHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEccccc
Confidence 99999999999863 345566 55 99999999 7999999999999999998874 579999999999999
Q ss_pred CccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHc
Q 018435 168 GGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRR 246 (356)
Q Consensus 168 g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~ 246 (356)
|+ .|++.+.+.. + ..+++++++.+. + ...++++.+|..+++|+++|+++|++.|+.+ ||+..+++++..++.
T Consensus 165 g~-~Ga~~~~~~~-~-~~~~~~~~~~~~--~--~g~i~~~~~g~~~~~i~v~G~~~Ha~~p~~g~nai~~~~~~i~~l~~ 237 (396)
T 3rza_A 165 GL-IGAKELNSEL-L-DADFGYAIDASA--D--VGTTVVGAPTQMLISAKIIGKTAHASTPKEGVSAINIAAKAISRMKL 237 (396)
T ss_dssp TS-HHHHHCCGGG-C-CCSEEEEEEESS--C--TTCEEEEECEEEEEEEEEECBCCBTTSGGGSBCHHHHHHHHHHHSCC
T ss_pred cc-HhHhhhchhh-c-ccceEEEEecCC--C--cceEEEcCCceEEEEEEEEeEecCCCCccccccHHHHHHHHHHhccc
Confidence 86 6999887643 2 356788887542 2 2378899999999999999999999999999 999999999988865
Q ss_pred chhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCc
Q 018435 247 FRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNM 324 (356)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~ 324 (356)
.+. ....+++++.+++|. +.|+||++|++.+++|+.+.++.+.+.++|++.+.. ...++
T Consensus 238 ~~~-------------~~~~~~~vg~i~gG~------~~NvIP~~a~~~~diR~~~~~~~~~~~~~i~~~~~~~a~~~g~ 298 (396)
T 3rza_A 238 GQV-------------DEITTANIGKFHGGS------ATNIVADEVILEAEARSHDPERIKTQVKHMTDVFETTASELGG 298 (396)
T ss_dssp EEE-------------ETTEEEEEEEEEECS------CTTBCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCC-------------CCCceeeeeEEecCC------CCcccCceEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 321 123788999999997 999999999999999999999999999999877652 33566
Q ss_pred eEEEEe
Q 018435 325 TFEVVI 330 (356)
Q Consensus 325 ~~~~~~ 330 (356)
++++..
T Consensus 299 ~~~i~~ 304 (396)
T 3rza_A 299 KAEVTV 304 (396)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 665543
|
| >3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=316.78 Aligned_cols=274 Identities=18% Similarity=0.175 Sum_probs=219.8
Q ss_pred hhHHHHHHHhhhcccCCCCCc--------ChhHHHHHHHHHHHHCCCc-eEEEeecCCCceEEEEecCCCC-CCCcEEEE
Q 018435 27 DDSIIERFRAYLQIDTSQPNP--------DYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNP-QLPSILLN 96 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~--------~e~~~~~~l~~~l~~~g~~-~~~~~~~~~~~nv~~~~~g~~~-~~~~il~~ 96 (356)
.++++++|++|++|||.|+.+ +|.++++||.++|+++|++ ++. +..+||+++++|+++ +.|+|+|+
T Consensus 26 ~~~~~~~l~~lv~i~s~s~~~~~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~----d~~~nv~a~~~g~~~~~~~~v~l~ 101 (434)
T 3ife_A 26 KEELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEVGLTEVTM----DDNGYVMATLPANTDKDVPVIGFL 101 (434)
T ss_dssp HHHHHHHHHHHHTSCCBCCTTCCSSSSSHHHHHHHHHHHHHHHHHTCEEEEE----CTTSCEEEEECCBSSSCCCCEEEE
T ss_pred HHHHHHHHHhhEEeeccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCceEEE----CCCcEEEEEeCCCCCCCCCeEEEE
Confidence 478999999999999986422 6789999999999999996 664 568999999998764 46899999
Q ss_pred eecccCCCCCCCCCCCCCCeeeC---------------------------CCCeEEecCc----ccchHHHHHHHHHHHH
Q 018435 97 SHTDVVPSEPSKWSHHPFGAHLD---------------------------SQGNIFARGS----QDMKCVGMQYLEAIRR 145 (356)
Q Consensus 97 aH~Dtvp~~~~~w~~~P~~~~~~---------------------------~~g~~~GrG~----~D~k~~~a~~l~a~~~ 145 (356)
||+||||.. .+|..+||..... .+++|||||+ +|||++++++|+|++.
T Consensus 102 ~H~DtVp~~-~~~~~~p~~~~~~dg~~i~l~~~~~~~~~~~~~~~~~~~~g~~~i~grG~t~~~~D~K~gva~~l~a~~~ 180 (434)
T 3ife_A 102 AHLDTATDF-TGKNVKPQIHENFDGNAITLNEELNIVLTPEQFPELPSYKGHTIITTDGTTLLGADDKAGLTEIMVAMNY 180 (434)
T ss_dssp EECCBCTTS-CCSSCCCEEETTCCSSCEEEETTTTEEECTTTCTTGGGGTTSCEEECCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred EEcccCCCC-CCCCCccEEeecCCCCceecccccccccChhhChhHHhhcCCcEEECCCccchhhhhHHHHHHHHHHHHH
Confidence 999999975 4799999864320 1269999997 9999999999999999
Q ss_pred HHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCcc
Q 018435 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHG 225 (356)
Q Consensus 146 l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs 225 (356)
|++.+..++++|.|+|+++||+| .|++++... .+ ..+.++++|.+ +. ..++++.+|..+++|+++|+++||
T Consensus 181 L~~~~~~~~~~i~~if~~~EE~g--~Ga~~~~~~-~~-~~d~~~~~d~~---~~--g~i~~~~~G~~~~~i~v~G~~~Ha 251 (434)
T 3ife_A 181 LIHNPQIKHGKIRVAFTPDEEIG--RGPAHFDVE-AF-GASFAYMMDGG---PL--GGLEYESFNAAGAKLTFNGTNTHP 251 (434)
T ss_dssp HHTCTTSCBCCEEEEEESCGGGT--CTGGGCCHH-HH-CCSEEEECCCC---ST--TEEECCBCEEEEEEEEEECBCCCG
T ss_pred HHhCCCCCCCCEEEEEECCcccC--hHHHHhhhh-hc-CCCEEEEecCC---CC--CceeecCCCeEEEEEEEEEEecCC
Confidence 99988788999999999999998 488876432 33 46788888742 22 368899999999999999999998
Q ss_pred C-CCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCC
Q 018435 226 A-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPT 303 (356)
Q Consensus 226 ~-~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~ 303 (356)
+ .|+.+ ||+..+++++..++.+..+ ..++.+++.+++| ..|+||++|++.+++|+.+.
T Consensus 252 g~~P~~g~nAi~~aa~~i~~l~~~~~~-------------~~~~~~~g~i~~g-------~~n~iP~~a~~~~diR~~~~ 311 (434)
T 3ife_A 252 GTAKNKMRNATKLAMEFNGHLPVEEAP-------------EYTEGYEGFYHLL-------SLNGDVEQSKAYYIIRDFDR 311 (434)
T ss_dssp GGCTTTCBCHHHHHHHHHHTSCTTCSG-------------GGCCTTCCEEEEE-------EEEECSSEEEEEEEEEESSH
T ss_pred CCCcccchhHHHHHHHHHHhcccccCC-------------CcceeeeEEEEee-------eEeEecCeEEEEEEEecCCH
Confidence 7 79888 9999999999888765221 1123334456655 78999999999999999999
Q ss_pred CCHHHHHHHHHHHhcc--CCCC---ceEEEEeeccc
Q 018435 304 TDAESLERRIVEEWAP--ASRN---MTFEVVINSLS 334 (356)
Q Consensus 304 ~~~~~~~~~i~~~~~~--~~~~---~~~~~~~~~~~ 334 (356)
++.+++.++|++++.. ...+ +++++.....+
T Consensus 312 ~~~~~i~~~i~~~~~~~~~~~g~~~~~v~~~~~~~~ 347 (434)
T 3ife_A 312 KNFEARKNTIENIVKQMQEKYGQDAVVLEMNDQYYN 347 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEEEEeecccc
Confidence 9999999999877652 2233 66665543333
|
| >3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=314.10 Aligned_cols=287 Identities=17% Similarity=0.191 Sum_probs=209.0
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCc----------ChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEec-CCCCCCC
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNP----------DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP-GSNPQLP 91 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~----------~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~-g~~~~~~ 91 (356)
++...+++++++++|++|||+++.. ++.++++|+.++|+++|++++.+ +|+++.++ |+ +.|
T Consensus 29 i~~~~~~~~~~l~~lv~ips~s~~e~~~~~~p~g~~~~~~~~~l~~~l~~~G~~~~~~------~~~~~~~~~g~--~~~ 100 (492)
T 3khx_A 29 VQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDV------DHIAGRIEAGK--GND 100 (492)
T ss_dssp HHTTHHHHHHHHHHHHTSCCCCCSSSCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEE------TTTEEEEEEEC--SSC
T ss_pred HHHhHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHcCCcceEe------CCEEEEEEeCC--CCC
Confidence 4456789999999999999985422 24699999999999999988764 23444443 43 348
Q ss_pred cEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccc
Q 018435 92 SILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHD 171 (356)
Q Consensus 92 ~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~ 171 (356)
+|+|+|||||||++ +.|+.+||++++ ++|++||||++|||++++++|+|++.|++.+..++++|.|+|+++||+|+ .
T Consensus 101 ~i~l~~H~D~vp~~-~~w~~~Pf~~~~-~~g~l~GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~-~ 177 (492)
T 3khx_A 101 VLGILCHVDVVPAG-DGWDSNPFEPVV-TEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDW-K 177 (492)
T ss_dssp EEEEEEECCCCCCC-SCCSSCTTSCEE-CSSEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEECCTTCCC-C
T ss_pred EEEEEEeccCCCCC-CCcccCCCceEE-ECCEEEecCCccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCccCCC-c
Confidence 99999999999996 489999999999 99999999999999999999999999999988889999999999999997 6
Q ss_pred cHHHHhccccccCCceEEEEecCcc----------------------------------------CcCCccee-------
Q 018435 172 GAEKFADSHVFNSLNVGIVLDEGLA----------------------------------------STTEDYRA------- 204 (356)
Q Consensus 172 G~~~~~~~~~~~~~~~~~~~~~g~~----------------------------------------~p~~~~~i------- 204 (356)
|+++++++.. ..+++++.|...+ .|.....+
T Consensus 178 g~~~~~~~~~--~~~~~~~~d~~~p~~~g~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~n~vpd~~~aiv~ept~~ 255 (492)
T 3khx_A 178 CTDRYFKTEE--MPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENM 255 (492)
T ss_dssp TTSHHHHHSC--CCSEEECSSCSSCSCCCBCEEEEEEEEECCCCCCCCCCSEEEEEEEECSCTTSCCCEEEEEEEECSCH
T ss_pred CHHHHHHhCc--CCCEEEecCCCccEEEecCcEEEEEEEEeccccccccccceeEEecccccCCcCCchHheEeecccch
Confidence 9999998642 2333333332110 01100001
Q ss_pred ------------EEeeeeeE-----EEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcch--hhhHHHHHhcc-----
Q 018435 205 ------------FYAERCPW-----WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFR--ASQFDLVKAGL----- 259 (356)
Q Consensus 205 ------------~~~~~G~~-----~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~--~~~~~~~~~~~----- 259 (356)
..+.+|.. +++|+++|+++|++.|+.| ||+..+++++.++.... ...++.+...+
T Consensus 256 ~~~~~~~~~~~~~~g~kG~~~~~~~~~~i~v~GkaaHas~P~~G~NAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 335 (492)
T 3khx_A 256 TDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDF 335 (492)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETTEEEEEEECBCCCC------BCHHHHHHHHHTTSCBCHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHHHHHhhcCceeEEEecCCeEEEEEEeEEcccCCCccCccHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCC
Confidence 12448888 9999999999999999999 99999999998775210 00011110000
Q ss_pred ---------cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEe
Q 018435 260 ---------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVI 330 (356)
Q Consensus 260 ---------~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 330 (356)
....+.+++|++.+++| . |++|++.+|+|+++..+.+++.++|++.+. ..++++++..
T Consensus 336 ~~~l~i~~~d~~~G~~t~n~g~i~~g-------~----P~~a~~~idiR~~~~~~~~~v~~~i~~~~~--~~g~~~~i~~ 402 (492)
T 3khx_A 336 GEKMGMKFHTDVMGDVTTNIGVITYD-------N----ENAGLFGINLRYPEGFEFEKAMDRFANEIQ--QYGFEVKLGK 402 (492)
T ss_dssp SGGGTCC-------CCEEEEEEEEEE-------T----TTCCEEEEEEEECTTCCHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred ccccCCccccCCcCccEEeeeEEEEe-------c----CCEEEEEEEeeCCCCCCHHHHHHHHHHHHH--HcCCEEEEec
Confidence 00123467788777765 1 999999999999999999999999998775 3577887765
Q ss_pred ecccc
Q 018435 331 NSLSL 335 (356)
Q Consensus 331 ~~~~~ 335 (356)
...|+
T Consensus 403 ~~~p~ 407 (492)
T 3khx_A 403 VQPPH 407 (492)
T ss_dssp EECCB
T ss_pred cCCce
Confidence 54553
|
| >2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=298.88 Aligned_cols=233 Identities=15% Similarity=0.205 Sum_probs=189.8
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCC--CCCCcEEEEeecccCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN--PQLPSILLNSHTDVVP 103 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~--~~~~~il~~aH~Dtvp 103 (356)
..+++++++++|++|||. +++|.++++||.++|+++|++++. +..+|+++.++|+. ++.|+|+|+||||+||
T Consensus 9 ~~~~~~~~~~~l~~ips~--s~~e~~~~~~l~~~l~~~G~~~~~----~~~~nv~a~~~g~~g~~~~~~i~l~aH~D~vp 82 (487)
T 2qyv_A 9 QPKLLWQWFDQICAIPHP--SYKEEQLAQFIINWAKTKGFFAER----DEVGNVLIRKPATVGMENRKPVVLQAHLDMVP 82 (487)
T ss_dssp SSHHHHHHHHHHHHSCCB--TTCCHHHHHHHHHHHHHTTCEEEE----CTTCCEEEEECCCTTCTTBCCEEEEEESCBCC
T ss_pred CHHHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHHHHcCCEEEE----cCCCcEEEEeCCCCCCCCCCeEEEEccCCccC
Confidence 468899999999999997 578999999999999999998775 45679999998742 3458999999999999
Q ss_pred CCCC----CCCCCCCCeeeCCCCeEEecCcc---cchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHH
Q 018435 104 SEPS----KWSHHPFGAHLDSQGNIFARGSQ---DMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (356)
Q Consensus 104 ~~~~----~w~~~P~~~~~~~~g~~~GrG~~---D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (356)
.++. +|+.+||++.+ ++|++||||+. |||++++++|++++. .+ .++++|+|+|+++||.|+ .|++++
T Consensus 83 ~~~~~~~~~w~~~p~~~~~-~dg~l~g~G~~lgaD~k~g~a~~l~a~~~---~~-~~~~~v~~~~~~~EE~g~-~Ga~~~ 156 (487)
T 2qyv_A 83 QANEGTNHNFDQDPILPYI-DGDWVKAKGTTLGADNGIGMASALAVLES---ND-IAHPELEVLLTMTEERGM-EGAIGL 156 (487)
T ss_dssp C----------CCCCCEEE-CSSEEEETTBCCCHHHHHHHHHHHHHHHC---SS-SCCSSEEEEEESCTTTTC-HHHHTC
T ss_pred CCCCCCccccccCCeeEEe-eCCEEEeCCCCcCCcCHHHHHHHHHHHHh---CC-CCCCCEEEEEEeccccCC-HHHHHH
Confidence 9764 89999999999 89999999997 999999999998863 34 367899999999999985 699998
Q ss_pred hccccccCCceEEEEecCccCcCCcceeEEeeeee-----------------EEEEEEEEe-cCCccCCC-CC-C-CHHH
Q 018435 177 ADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCP-----------------WWLVIKARG-APGHGAKL-YD-N-SAME 235 (356)
Q Consensus 177 ~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~-----------------~~~~v~~~G-~~~Hs~~p-~~-g-nai~ 235 (356)
++++ +. .+.++++|.+. ...+.++.+|. .+++|+++| +++||+.| +. + ||+.
T Consensus 157 ~~~~-~~-~d~~~~~d~~~-----~~~i~~g~~g~~~~~~~~~~~~~~~~~g~~~~i~v~G~~~~Hsg~~~~~g~~nAi~ 229 (487)
T 2qyv_A 157 RPNW-LR-SEILINTDTEE-----NGEIYIGCAGGENADLELPIEYQVNNFEHCYQVVLKGLRGGHSGVDIHTGRANAIK 229 (487)
T ss_dssp CSSC-CC-CSEEEECCCCC-----TTEEEEEECEEEEEEEEEECCEEECCCSEEEEEEEECCCCCBTTTTTTSCCCCHHH
T ss_pred HHhc-cC-CCEEEEEccCC-----CCeEEEeccCCcceeeeccccccccCCCeEEEEEEEccCCccCCcccccCCCCHHH
Confidence 8754 43 67777766431 12455555544 779999999 89999987 44 3 9999
Q ss_pred HHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEE
Q 018435 236 NLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298 (356)
Q Consensus 236 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~di 298 (356)
.+++++..+..+. ...+++++.++||. +.|+||++|++.+++
T Consensus 230 ~~~~~i~~l~~~~---------------~~~~~~v~~i~gG~------~~NvIP~~a~~~~~~ 271 (487)
T 2qyv_A 230 VLLRFLAELQQNQ---------------PHFDFTLANIRGGS------IRNAIPRESVATLVF 271 (487)
T ss_dssp HHHHHHHHHHHHC---------------TTCCEEEEEEEEES------CTTBCCCCEEEEEEE
T ss_pred HHHHHHHHHhhcc---------------CCCcEEEEEEeCCC------cCcccCCceEEEEEe
Confidence 9999999887642 12578899999998 999999999999999
|
| >1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=291.98 Aligned_cols=269 Identities=22% Similarity=0.235 Sum_probs=214.5
Q ss_pred hHHHHHHHhhhcccCCCCCc--------ChhHHHHHHHHHHHHCCCc-eEEEeecCCCceEEEEecCCCC-CCCcEEEEe
Q 018435 28 DSIIERFRAYLQIDTSQPNP--------DYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNP-QLPSILLNS 97 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~--------~e~~~~~~l~~~l~~~g~~-~~~~~~~~~~~nv~~~~~g~~~-~~~~il~~a 97 (356)
++++++|++|++|||+|+.+ +|.++++||.++|+++|++ ++. +..+|+++.++|+++ ..|+|+|.|
T Consensus 2 ~~~~~~l~~Lv~i~s~s~~~~~~~p~~~~e~~~~~~l~~~l~~~G~~~~~~----~~~~nvia~~~g~~~~~~~~i~l~a 77 (417)
T 1fno_A 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITL----SEKGTLMATLPANVEGDIPAIGFIS 77 (417)
T ss_dssp CSHHHHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHTCEEEEE----CTTCCEEEEECCSSCSCCCCEEEEE
T ss_pred hHHHHHHHHhEEecCCCCcccCCCCCCccHHHHHHHHHHHHHHcCCCeEEE----CCCceEEEEECCCCCCCCCceEEEE
Confidence 45889999999999986432 6889999999999999998 654 467899999987642 358999999
Q ss_pred ecccCCCCCCCCCCCCC-----Cee-e--------------------CCCCeEEecCc----ccchHHHHHHHHHHHHHH
Q 018435 98 HTDVVPSEPSKWSHHPF-----GAH-L--------------------DSQGNIFARGS----QDMKCVGMQYLEAIRRLK 147 (356)
Q Consensus 98 H~Dtvp~~~~~w~~~P~-----~~~-~--------------------~~~g~~~GrG~----~D~k~~~a~~l~a~~~l~ 147 (356)
||||||..+ .|..+|| .+. + ..|+++||||+ .|||++++++|++++.|+
T Consensus 78 H~D~Vp~~~-~~~~~p~~~~~~~g~~i~~~~g~~~~~~~~~~~~~~~~gd~~l~grGat~l~~D~K~g~a~~l~a~~~l~ 156 (417)
T 1fno_A 78 HVDTSPDFS-GKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLK 156 (417)
T ss_dssp ECCBCTTSC-CSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCTTSCEEECCSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred eccccCCCC-CCCCCceEEecCCCCeecccccccccchhhcchhhhhcCCcEEEcCCccccccccHHhHHHHHHHHHHHH
Confidence 999999874 6988885 442 1 03579999997 999999999999999999
Q ss_pred HcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccC-
Q 018435 148 ASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA- 226 (356)
Q Consensus 148 ~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~- 226 (356)
+.+ .++++|+|+|+++||.| .|++++.+++ + ..+++++++.+ |.+ .++++.+|..+++|+++|+++|++
T Consensus 157 ~~~-~~~~~v~~~~~~~EE~g--~Ga~~~~~~~-~-~~d~~i~~d~~---~~g--~i~~~~~g~~~~~i~~~G~~~Hs~~ 226 (417)
T 1fno_A 157 GNP-IPHGDIKVAFTPDEEVG--KGAKHFDVEA-F-GAQWAYTVDGG---GVG--ELEFENFNAASVNIKIVGNNVHPGT 226 (417)
T ss_dssp SSS-CCCCCEEEEEESCGGGT--CTTTTCCHHH-H-CCSEEEECCCC---STT--BEECCBCEEEEEEEEEECBCCCGGG
T ss_pred hCC-CCCCcEEEEEEeccccC--CChhhhchhh-c-CCCEEEEeCCC---CcC--eeEEecCCceeEEEEEEeeccCCCC
Confidence 988 67899999999999987 4888776443 3 46778887653 333 578899999999999999999999
Q ss_pred CCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCC
Q 018435 227 KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTD 305 (356)
Q Consensus 227 ~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~ 305 (356)
.|+.+ ||+..+++++..+..+..+. .......+++++.+++| |++|++.+++|+.+.++
T Consensus 227 ~p~~g~nAi~~~a~~i~~l~~~~~~~--------~~~~~~~~~~v~~i~gG------------p~~a~~~~d~R~~~~~~ 286 (417)
T 1fno_A 227 AKGVMVNALSLAARIHAEVPADEAPE--------TTEGYEGFYHLASMKGT------------VDRAEMHYIIRDFDRKQ 286 (417)
T ss_dssp CTTTCBCHHHHHHHHHHTSCTTSSGG--------GCCTTCCEEEEEEEEEC------------SSEEEEEEEEEESSHHH
T ss_pred CccccCCHHHHHHHHHHhhhccCCcc--------cccccccEEEEEEEeec------------cCeEEEEEEEeCCCHHH
Confidence 68888 99999999998887654321 01122357788777764 89999999999999999
Q ss_pred HHHHHHHHHHHhcc--CCCC----ceEEEEee
Q 018435 306 AESLERRIVEEWAP--ASRN----MTFEVVIN 331 (356)
Q Consensus 306 ~~~~~~~i~~~~~~--~~~~----~~~~~~~~ 331 (356)
.+.+.++|++.+.. ...+ +++++...
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 318 (417)
T 1fno_A 287 FEARKRKMMEIAKKVGKGLHPDCYIELVIEDS 318 (417)
T ss_dssp HHHHHHHHHHHHHHHTTTCCTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEecc
Confidence 99999999977652 2223 66665443
|
| >1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=290.33 Aligned_cols=287 Identities=17% Similarity=0.237 Sum_probs=206.3
Q ss_pred CCChhHHHHHHHhhhcccCCCCCc----------ChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcE
Q 018435 24 AKSDDSIIERFRAYLQIDTSQPNP----------DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93 (356)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~~----------~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~i 93 (356)
+...+++++++++|++|||++... ++.++++||.++|+++|++++.+ +..++++.+ |.+ .|+|
T Consensus 10 ~~~~~~~~~~l~~l~~ips~s~~~~~~~~~p~~~~~~~~~~~l~~~l~~~G~~~~~~----~~~~~~~~~-g~~--~~~i 82 (470)
T 1lfw_A 10 EAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENF----ANYAGRVNF-GAG--DKRL 82 (470)
T ss_dssp HTTHHHHHHHHHHHHTSCCBCCGGGCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEE----TTTEEEEEE-CCC--SSEE
T ss_pred HHhHHHHHHHHHHHcCCCCcCCCccccccCCCcHHHHHHHHHHHHHHHHcCCeEEEe----cCeEEEEEe-CCC--CCeE
Confidence 356789999999999999985321 23789999999999999987652 346778877 643 4899
Q ss_pred EEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccH
Q 018435 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (356)
Q Consensus 94 l~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (356)
+|+|||||||+++ +|+++||++.++++|++||||+.|||++++++|+|++.|++.+..++++|+|+|+++||+|+ .|+
T Consensus 83 ~l~~H~D~vp~~~-~w~~~Pf~~~~~~~g~l~grG~~D~K~~~a~~l~a~~~l~~~~~~~~~~i~~i~~~~EE~g~-~G~ 160 (470)
T 1lfw_A 83 GIIGHMDVVPAGE-GWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKIDFVLGTNEETNW-VGI 160 (470)
T ss_dssp EEEEECCBCCCCS-CCSSCTTSCEECTTCEEESTTSSSSHHHHHHHHHHHHHHHHHTCCCSSEEEEEEESCTTTTC-HHH
T ss_pred EEEEeecccCCCC-CccCCCcceeEeeCCEEECCCcccChHHHHHHHHHHHHHHHcCCCCCCCEEEEEecCcccCC-ccH
Confidence 9999999999975 89999999985348999999999999999999999999999888889999999999999986 699
Q ss_pred HHHhccccccC----CceE--EEEec-Ccc-------Cc--CCcc-----------e-------eEE-------------
Q 018435 174 EKFADSHVFNS----LNVG--IVLDE-GLA-------ST--TEDY-----------R-------AFY------------- 206 (356)
Q Consensus 174 ~~~~~~~~~~~----~~~~--~~~~~-g~~-------~p--~~~~-----------~-------i~~------------- 206 (356)
++++++..... .|.. +++.. +.. .+ .+.+ . +..
T Consensus 161 ~~~~~~~~~~~~~~~~D~~~~~~~ge~g~~~~~l~~~~~~~~g~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~ 240 (470)
T 1lfw_A 161 DYYLKHEPTPDIVFSPDAEYPIINGEQGIFTLEFSFKNDDTKGDYVLDKFKAGIATNVTPQVTRATISGPDLEAVKLAYE 240 (470)
T ss_dssp HHHHHHSCCCSEEEESSEESSEEEEECEEEEEEEEECCCCCCCSBEEEEEEECSBTTBCCSEEEEEEECSCHHHHHHHHH
T ss_pred HHHHHhCcCCcEEEEeCCCceEEEeccceEEEEEEEccCCcCCCcceeeeecCCcCCcccccceEEecccchHHHHHHHH
Confidence 99987643211 1110 11110 000 00 0000 0 111
Q ss_pred ------eeeeeE-----EEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcch--hhhHHHHHhcc----c--------
Q 018435 207 ------AERCPW-----WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFR--ASQFDLVKAGL----K-------- 260 (356)
Q Consensus 207 ------~~~G~~-----~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~--~~~~~~~~~~~----~-------- 260 (356)
+.+|.. +++|+++|+++|++.|+.+ ||+.++++++..+.... ....+.+...+ .
T Consensus 241 ~~~~~~~~~G~~~~~~~~~~i~v~G~~~Ha~~P~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 320 (470)
T 1lfw_A 241 SFLADKELDGSFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHEDFYGKKLGIFH 320 (470)
T ss_dssp HHHHHHTCEEEEEEETTEEEEEEECBCCBTTCGGGSBCHHHHHHHHHTTSCBCHHHHHHHHHHHHTTTTCTTSTTTTCCC
T ss_pred HHhhhhccccceeecCCcEEEEEeecccCCCCCccCccHHHHHHHHHHhCCCcchhHHHHHHHHHhcCCCCcccccCCcc
Confidence 245665 8999999999999999988 99999999987764110 00011111000 0
Q ss_pred --ccCCceeeeEeeeecCCCCCCCccccccCCe-EEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEeeccc
Q 018435 261 --AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSE-AEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVINSLS 334 (356)
Q Consensus 261 --~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~-~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 334 (356)
.....++++++ .+|.+|++ |++.+++|+++.++.+.+.++|++.+. . ++++++....++
T Consensus 321 ~~~~~~~~t~~~g------------~i~~~p~~~a~~~~diR~~~~~~~~~i~~~i~~~~~-~--g~~v~~~~~~~~ 382 (470)
T 1lfw_A 321 HDDLMGDLASSPS------------MFDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFS-G--ILDVTYNGFEEP 382 (470)
T ss_dssp EETTTEECEEEEE------------EEEEETTSCEEEEEEEEECTTCCHHHHHHHHHHHHT-T--TEEEECSCCBCC
T ss_pred cccccccceEEEE------------EEEEcCCceEEEEEEEecCCCCCHHHHHHHHHHHhc-C--CeEEEEEeCCCc
Confidence 00012344444 44557999 999999999999999999999998776 3 666655433333
|
| >3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=292.81 Aligned_cols=267 Identities=13% Similarity=0.126 Sum_probs=211.6
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCC--CCCCcEEEEeecccCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN--PQLPSILLNSHTDVVP 103 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~--~~~~~il~~aH~Dtvp 103 (356)
..+++++++++|++|||. +++|.++++||.++|+++|++++. +..+|+++.++|+. .+.|+|+|.||||+||
T Consensus 12 ~~~~~~~~~~~L~~ips~--s~~e~~~~~~l~~~l~~~G~~v~~----~~~~nv~a~~~g~~g~~~~~~v~l~aH~D~vp 85 (490)
T 3mru_A 12 SPAPLWQFFDKICSIPHP--SKHEEALAQYIVTWATEQGFDVRR----DPTGNVFIKKPATPGMENKKGVVLQAHIDMVP 85 (490)
T ss_dssp SSHHHHHHHHHHHHSCCB--TTCCTTHHHHHHHHHHHTTCEEEE----CTTCCEEEEECCCTTCTTCCCEEEEEECCBCC
T ss_pred CHHHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHHcCCEEEE----cCCCeEEEEEcCCCCCCCCCeEEEEeccCCCC
Confidence 458899999999999996 678999999999999999998875 56789999998752 2468999999999999
Q ss_pred CCC----CCCCCCCCCeeeCCCCeEEecCcc---cchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHH
Q 018435 104 SEP----SKWSHHPFGAHLDSQGNIFARGSQ---DMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (356)
Q Consensus 104 ~~~----~~w~~~P~~~~~~~~g~~~GrG~~---D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (356)
..+ .+|+.+||++.+ ++|++||||+. |||+++|++|++++ +. ..++++|.|+|+++||+|+ .|++.+
T Consensus 86 ~~~~~~~~~w~~~p~~~~~-~~g~l~g~G~~lgaD~k~g~a~~l~~l~---~~-~~~~~~v~~~~~~~EE~g~-~Ga~~~ 159 (490)
T 3mru_A 86 QKNEDTDHDFTQDPIQPYI-DGEWVTAKGTTLGADNGIGMASCLAVLA---SK-EIKHGPIEVLLTIDEEAGM-TGAFGL 159 (490)
T ss_dssp CBCTTSCCCTTTCCCCEEE-ETTEEEETTBCCCHHHHTTHHHHHHHHH---CS-SCCCCSEEEEEESCSSSTT-GGGGTC
T ss_pred CCCCCcccccccCCceEEe-eCCeEecCCCccCCCCHHHHHHHHHHHH---hC-CCCCCCEEEEEEccccccc-HhHHHh
Confidence 975 279999999999 99999999996 99999999998753 33 3468999999999999985 699988
Q ss_pred hccccccCCceEEEEecCccCc------CCc---c----eeEEeeeeeEEEEEEEEe-cCCccCC-CCCC--CHHHHHHH
Q 018435 177 ADSHVFNSLNVGIVLDEGLAST------TED---Y----RAFYAERCPWWLVIKARG-APGHGAK-LYDN--SAMENLFK 239 (356)
Q Consensus 177 ~~~~~~~~~~~~~~~~~g~~~p------~~~---~----~i~~~~~G~~~~~v~~~G-~~~Hs~~-p~~g--nai~~~~~ 239 (356)
++. .+ ..++++.+|.+.... .+. . ....+++|..+++|+++| +++||+. |+.| ||+..+++
T Consensus 160 ~~~-~~-~~~~~~~~d~~~~g~~~~g~~~g~~~~~~~~~~~~~~~~g~~~~~i~v~G~~~gHs~~~p~~g~~nai~~~~~ 237 (490)
T 3mru_A 160 EAG-WL-KGDILLNTDSEQEGEVYMGCAGGIDGAMTFDITRDAIPAGFITRQLTLKGLKGGHSGCDIHTGRGNANKLIGR 237 (490)
T ss_dssp CSS-SC-CSSEEEECCCCCTTCCEEEECEEEEEEEEEECCEECCCTTEEEEEEEEECCCCEETTTSSSSCCCCHHHHHHH
T ss_pred hhc-cc-CCCEEEEcCCCCCCeEEEecCCccceEEEeeeeeeccCCCceEEEEEEECCCCcccccccccCCcCHHHHHHH
Confidence 875 23 357788887531100 000 0 012356789999999999 8999995 7766 99999999
Q ss_pred HHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc-
Q 018435 240 SIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA- 318 (356)
Q Consensus 240 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~- 318 (356)
++..+.+. .+++++.++||+ +.|+||++|++.+++|..+.+..++..+++.+.+.
T Consensus 238 ~l~~l~~~------------------~~~~v~~i~gG~------~~NvIP~~a~~~~~iR~~~~~~~~~~~~~~~~~~~~ 293 (490)
T 3mru_A 238 FLAGHAQE------------------LDLRLVEFRGGS------LRNAIPREAFVTVALPAENQDKLAELFNYYTELLKT 293 (490)
T ss_dssp HHHHHTTT------------------TTCEEEEEEECS------CTTEECCCEEEEEEEEGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc------------------CcEEEEEEECCC------CCcccCCccEEEEEECcccHHHHHHHHHHHHHHHHH
Confidence 99887541 367889999998 99999999999999998876666666666655443
Q ss_pred ---cCCCCceEEEEe
Q 018435 319 ---PASRNMTFEVVI 330 (356)
Q Consensus 319 ---~~~~~~~~~~~~ 330 (356)
....++++++..
T Consensus 294 ~~~~~~~~~~i~~~~ 308 (490)
T 3mru_A 294 ELGKIETDIVTFNEE 308 (490)
T ss_dssp HHTTTCCCCEEEEEE
T ss_pred HhhccCCCeEEEEEe
Confidence 234566666554
|
| >3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=290.30 Aligned_cols=260 Identities=17% Similarity=0.173 Sum_probs=211.3
Q ss_pred CCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCC
Q 018435 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP 103 (356)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp 103 (356)
+...+++++++++|+++||. +++|.++++||.++|+++|++++.. .....+|++++++|.++ +|+|+|+|||||||
T Consensus 12 ~~~~~~~~~~~~~l~~~pe~--s~~E~~~~~~i~~~l~~~G~~v~~~-~~g~~~~via~~~g~~~-g~~i~l~ah~D~vp 87 (394)
T 3ram_A 12 ETNKYSYIEISHRIHERPEL--GNEEIFASRTLIDRLKEHDFEIETE-IAGHATGFIATYDSGLD-GPAIGFLAEYDALP 87 (394)
T ss_dssp HHTHHHHHHHHHHHHHSCCC--TTCCHHHHHHHHHHHHHTTCEEEEE-ETTEEEEEEEEEECSSS-SCEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHHHHhCCCC--CcchHHHHHHHHHHHHHcCCeEEeC-CCCCceEEEEEEeCCCC-CCEEEEEEecccCC
Confidence 44568999999999999997 6799999999999999999988752 22225799999987654 48999999999998
Q ss_pred CCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHH-HHhccccc
Q 018435 104 SEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE-KFADSHVF 182 (356)
Q Consensus 104 ~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~-~~~~~~~~ 182 (356)
. ++||||. |+ ..+++|.+++.|++.+..++++|.|+|+++||+|+..|++ .+++.+.+
T Consensus 88 g------------------~~ha~G~-d~--~~a~~l~aa~~L~~~~~~~~g~v~~~f~~~EE~~~~~Ga~~~~~~~g~~ 146 (394)
T 3ram_A 88 G------------------LGHACGH-NI--IGTASVLGAIGLKQVIDQIGGKVVVLGCPAEEGGENGSAKASYVKAGVI 146 (394)
T ss_dssp T------------------TSSTTCH-HH--HHHHHHHHHHHHHTTHHHHCSEEEEEECCCTTCCTTCCHHHHHHHHTGG
T ss_pred C------------------cceECCc-cH--HHHHHHHHHHHHHHhHhhCCceEEEEEECCccCCCCCchHHHHHHcCCc
Confidence 2 1355674 54 4577888999998776567899999999999987335999 89988777
Q ss_pred cCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccC-CCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhccc
Q 018435 183 NSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (356)
Q Consensus 183 ~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~-~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~ 260 (356)
+++|.+++++.. ....+..+.+|..+++|+++|+++|++ .|+.+ ||+.++++++..|+.++..
T Consensus 147 ~~~d~~~~~h~~-----~~~~~~~~~~g~~~~~i~v~Gk~~Ha~~~P~~g~nAi~~a~~~i~~l~~l~~~---------- 211 (394)
T 3ram_A 147 DQIDIALMIHPG-----NETYKTIDTLAVDVLDVKFYGKSAHASENADEALNALDAMISYFNGVAQLRQH---------- 211 (394)
T ss_dssp GGCSEEECCEEE-----SSBBCCCCBCEEEEEEEEEECBCCBHHHHGGGCBCHHHHHHHHHHHHHHHGGG----------
T ss_pred ccCCEEEEECCc-----cccCCCccccceeEEEEEEEccccccCCCCcCCCCHHHHHHHHHHHHHHHHhh----------
Confidence 777888877642 123455678999999999999999999 99999 9999999999999876532
Q ss_pred ccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 261 ~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
....++++++.++||. +.|+||++|++.+++|+.+.++.+.+.++|++++.. ..+++++++..
T Consensus 212 -~~~~~~~~~~~i~gG~------~~NvIP~~a~~~~~iR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~ei~~ 276 (394)
T 3ram_A 212 -IKKDQRVHGVILDGGK------AANIIPDYTHARFYTRAMTRKELDILTEKVNQIARGAAIQTGCDYEFGP 276 (394)
T ss_dssp -SCTTCEEEEEEEEBCS------CTTBCCSEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred -CCCCCeeEEEEEECCC------CCceeCCeEEEEEEEeeCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 1122567778889988 999999999999999999999999999999877652 34677887765
|
| >1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-36 Score=259.85 Aligned_cols=191 Identities=50% Similarity=0.921 Sum_probs=164.1
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
+.++++++|++|++|||+++..++.++++|+.++|+++|++++..+...+.+|+++.++|++++.|+|+|+||+||||++
T Consensus 8 ~~~~~~~~l~~lv~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~g~~~~i~~~~g~~~~~~~ill~aH~DtVp~~ 87 (198)
T 1q7l_A 8 EEHPSVTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSILLNSHTDVVPVF 87 (198)
T ss_dssp CCCHHHHHHHHHHTSCCBTTSCCHHHHHHHHHHHHHHHTCEEEEEEEETTEEEEEEEECCSSTTSCEEEEEEECCBCCCC
T ss_pred hHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHCCCeEEEEEcCCCCeEEEEEEccCCCCCCeEEEEeeecccCCC
Confidence 45789999999999999865457899999999999999999887655457789999998876545899999999999997
Q ss_pred CCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCC
Q 018435 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (356)
Q Consensus 106 ~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (356)
+++|+++||++.+.++|++||||+.|||++++++|+|++.|++.+..++++|+|+|+++||.|+..|+++++++..+...
T Consensus 88 ~~~w~~~pf~~~~~~~g~l~GrGa~D~K~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~~Ga~~~~~~~~~~~~ 167 (198)
T 1q7l_A 88 KEHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVPDEEVGGHQGMELFVQRPEFHAL 167 (198)
T ss_dssp GGGCSSCTTTCCBCTTSEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCGGGTSTTTHHHHTTSHHHHTT
T ss_pred cccCccCCCeeeEccCCEEEeCcchhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcccccCccccHHHHHHhHHhccC
Confidence 67899999998763589999999999999999999999999999888899999999999999855799999987543334
Q ss_pred ceEEEEecCccCcCCcceeEEeeeeeEEEEE
Q 018435 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVI 216 (356)
Q Consensus 186 ~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v 216 (356)
+..+++|.+..+|++.+.++++++|..|++|
T Consensus 168 ~~~~~id~g~~ept~~~~v~~~~kG~~~~~v 198 (198)
T 1q7l_A 168 RAGFALDEGIANPTDAFTVFYSERSPWWVRV 198 (198)
T ss_dssp CEEEEEECCCCCSSSSEEEEECCSSCGGGCC
T ss_pred CcCEEEecCccCCCCCceEEEEccEEEEEEC
Confidence 5567888887789876789999999887653
|
| >3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=277.12 Aligned_cols=261 Identities=15% Similarity=0.145 Sum_probs=209.5
Q ss_pred ChhHHHHHHHhhhcccCCC--------CCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEe
Q 018435 26 SDDSIIERFRAYLQIDTSQ--------PNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s--------~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
+.++++++|++|++|++.+ .+++|.++++||.++|+++|++++. +..+|+++.++|++++.|+|+|.|
T Consensus 3 ~~~~~~~~l~~l~~i~s~~~~g~~r~~~s~~e~~~~~~l~~~l~~~g~~~~~----d~~gnv~a~~~g~~~~~~~i~l~a 78 (408)
T 3n5f_A 3 QGERLWQRLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYE----DAAGNLIGRKEGTNPDATVVLVGS 78 (408)
T ss_dssp CHHHHHHHHHHHHTTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHHTCEEEE----CTTCCEEEEECCSSTTSCEEEEEE
T ss_pred CHHHHHHHHHHHHccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHCCCEEEE----cCCCCEEEEecCCCCCCCEEEEEe
Confidence 3578999999999999953 2678999999999999999998875 556799999998765468999999
Q ss_pred ecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccC----ccccH
Q 018435 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGA 173 (356)
Q Consensus 98 H~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~ 173 (356)
|||+||.+ |..|+|+|++++|.+++.|++++..++++|.|+|+++||.+ ++.|+
T Consensus 79 H~D~v~~~----------------------g~~d~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~~~~~~g~~Gs 136 (408)
T 3n5f_A 79 HLDSVYNG----------------------GCFDGPLGVLAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGARFRFGMIGS 136 (408)
T ss_dssp ESCCCTTB----------------------CSSTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCSSCTTTTCCCHHH
T ss_pred cCCCCCCC----------------------CccCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCccccccCCCCcCH
Confidence 99999964 57799999999999999999998888999999999999973 34589
Q ss_pred HHHhcc------------cc---------------c-----c--CCceEEEEecCcc---Cc-CCcceeEEeeeeeEEEE
Q 018435 174 EKFADS------------HV---------------F-----N--SLNVGIVLDEGLA---ST-TEDYRAFYAERCPWWLV 215 (356)
Q Consensus 174 ~~~~~~------------~~---------------~-----~--~~~~~~~~~~g~~---~p-~~~~~i~~~~~G~~~~~ 215 (356)
+.++.. +. + + +.+..+.++.... ++ .....++.+++|..+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~lhi~~g~~le~~~~~~gi~~~~~g~~~~~ 216 (408)
T 3n5f_A 137 RAMAGTLPPEALECRDAEGISLAEAMKQAGLDPDRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAGLIWVK 216 (408)
T ss_dssp HHHHTCCCGGGGSCBCTTCCBHHHHHHHTTCCGGGGGGGCCCTTTEEEEEEEEECSSSHHHHHTCSEEEEEEECEEEEEE
T ss_pred HHHHcCCCHHHhhccCCCCCCHHHHHHHhCCChhhhhhcccCccCccEEEEEeeccchhHHHcCCCeEEEEEeccceEEE
Confidence 888731 10 1 1 2343444443211 01 12457888999999999
Q ss_pred EEEEecCCcc-CCC-CCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-CCCCCCccccccCCe
Q 018435 216 IKARGAPGHG-AKL-YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSE 291 (356)
Q Consensus 216 v~~~G~~~Hs-~~p-~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~~~~~~~~~nvip~~ 291 (356)
|+++|+++|+ +.| +.+ ||+..+++++..|+.+... .. .++++++.+++| . +.|+||++
T Consensus 217 i~v~G~~~Hags~P~~~g~nAi~~aa~~i~~l~~~~~~-----------~~-~~~~~vg~i~gG~~------~~NvIP~~ 278 (408)
T 3n5f_A 217 FTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEARR-----------TG-TTVGTVGQLHVYPG------GINVIPER 278 (408)
T ss_dssp EEEECCCEETTTSCTTTCCCHHHHHHHHHHHHHHHHHH-----------HS-SCEEEEEEEEEESC------CTTEECSE
T ss_pred EEEEEEcCcCCCCccccccCHHHHHHHHHHHHHHHHHh-----------cC-CcEEEEEEEEecCC------CCcCcCCe
Confidence 9999999999 579 477 9999999999999876421 11 478899999987 6 99999999
Q ss_pred EEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 292 AEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 292 ~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
|++.+++|+.+.++.+++.++|++.+.. ...++++++..
T Consensus 279 a~~~~diR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~~i~~ 319 (408)
T 3n5f_A 279 VEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNVRVTTER 319 (408)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 9999999999999999999999877652 33566666654
|
| >2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=276.80 Aligned_cols=263 Identities=14% Similarity=0.163 Sum_probs=207.8
Q ss_pred CCCCChhHHHHHHHhh-hcccCCC-----C----------CcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecC
Q 018435 22 SPAKSDDSIIERFRAY-LQIDTSQ-----P----------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPG 85 (356)
Q Consensus 22 ~~~~~~~~~~~~l~~l-~~i~s~s-----~----------~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g 85 (356)
.+....++++++|++| ++|||+| + +++|.++++||.++|+++|++++. +..+|++++++|
T Consensus 26 ~~~~~~~~~~~~l~~L~v~i~s~s~~~~~~~~~g~~r~~~s~~e~~~~~~l~~~l~~~G~~v~~----d~~gnvia~~~g 101 (474)
T 2v8h_A 26 PLSIASGRLNQTILETGSQFGGVARWGQESHEFGMRRLAGTALDGAMRDWFTNECESLGCKVKV----DKIGNMFAVYPG 101 (474)
T ss_dssp -CCCCTTHHHHHHHHHHHHTTEECCCSSSTTCCEECCCTTSHHHHHHHHHHHHHHHHTTCEEEE----BTTCCEEEEECC
T ss_pred cccCCHHHHHHHHHHHhhhcCCccccccccccCCcccCCCCHHHHHHHHHHHHHHHHcCCEEEE----ecCceEEEEECC
Confidence 3456778999999999 9999974 1 467899999999999999998774 456799999987
Q ss_pred CCCCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecc
Q 018435 86 SNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165 (356)
Q Consensus 86 ~~~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~E 165 (356)
++++ ++|+|+|||||||+++ .+|+|++++++|+|++.|++.+..++++|.|+|+++|
T Consensus 102 ~~~~-~~i~l~~H~DtVp~~g----------------------~~D~k~gvaa~L~a~~~L~~~~~~~~~~v~lif~~dE 158 (474)
T 2v8h_A 102 KNGG-KPTATGSHLDTQPEAG----------------------KYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNA 158 (474)
T ss_dssp SSCC-SCEEEEECCCCCSSBC----------------------SSTTHHHHHHHHHHHHHHHHHTCCCSSCEEEEECTTC
T ss_pred CCCC-CeEEEEEecccCCCCC----------------------CcCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCc
Confidence 6543 6999999999999752 2499999999999999999998888999999999999
Q ss_pred ccC----ccccHHHHhcccc--------------------------c----------cCCceEEEEecCcc---C-cCCc
Q 018435 166 EIG----GHDGAEKFADSHV--------------------------F----------NSLNVGIVLDEGLA---S-TTED 201 (356)
Q Consensus 166 E~g----~~~G~~~~~~~~~--------------------------~----------~~~~~~~~~~~g~~---~-p~~~ 201 (356)
|++ ++.|++.+.+... + ...+..+.++.... . ....
T Consensus 159 E~~~~~~g~~Gs~~l~~~~~~~~~~~~~d~~~~dg~~~~e~l~~~G~~~~~~~~~~~e~~~~~~~lHi~~g~~l~~~g~~ 238 (474)
T 2v8h_A 159 EGARFARSCTGSSVWSHDLSLEEAYGLMSVGEDKPESVYDSLKNIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKA 238 (474)
T ss_dssp SCSSSSCTTHHHHHHTTSSCHHHHHTCBCSSCSSCCBHHHHHHHHTCCCSBCSCTTTSCCSEEEEEEECCSSHHHHTTCS
T ss_pred cCCCCCCCcccHHHHHhccCHhhhhhhcccccccCccHHHHHHhcCCcccccccccccchhhheeeeeccCccccccCCc
Confidence 983 3458888865100 0 11233333332110 0 0123
Q ss_pred ceeEEeeeeeEEEEEEEEecCCccC-CCC-CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-C
Q 018435 202 YRAFYAERCPWWLVIKARGAPGHGA-KLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-T 277 (356)
Q Consensus 202 ~~i~~~~~G~~~~~v~~~G~~~Hs~-~p~-~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~ 277 (356)
..++.+.+|..+++|+++|+++||+ .|+ .+ ||+..+++++..+..+... . .++++++.+++| .
T Consensus 239 ~~i~~~~~G~~~~~i~v~G~~~Hsg~~P~~~g~nAi~~~a~~i~~l~~~~~~-----------~--~~t~~vg~i~gG~~ 305 (474)
T 2v8h_A 239 IGIVTGVQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQR-----------H--NGLFTCGIIDAKPY 305 (474)
T ss_dssp EEEEEEECEEEEEEEEEECCCEETTTCCGGGCCCHHHHHHHHHHHHHHHHHH-----------T--TCEEECCCEEEESC
T ss_pred ceeEEeecceEEEEEEEEeecCCCCCCCcccCCCHHHHHHHHHHHHHHHHhh-----------c--CCEEEEEEEEecCC
Confidence 5778899999999999999999999 586 67 9999999999998765331 1 368899999987 6
Q ss_pred CCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CC---CCceEEEEe
Q 018435 278 PSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--AS---RNMTFEVVI 330 (356)
Q Consensus 278 ~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~---~~~~~~~~~ 330 (356)
+.|+||++|++.+++|+++.++.+++.++|++.+.. .. .++++++..
T Consensus 306 ------~~NvIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~~~~~g~~~~~~~ 357 (474)
T 2v8h_A 306 ------SVNIIPGEVSFTLDFRHPSDDVLATMLKEAAAEFDRLIKINDGGALSYESET 357 (474)
T ss_dssp ------CTTEECSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHTTCCTTCCCEEEEEE
T ss_pred ------CCceeCCEEEEEEEecCCChHHHHHHHHHHHHHHHHHHhhcccCCcEEEEEE
Confidence 999999999999999999999999999999977752 33 677776653
|
| >1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=275.16 Aligned_cols=262 Identities=13% Similarity=0.152 Sum_probs=205.2
Q ss_pred ChhHHHHHHHhhhcccCCCC--------CcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEe
Q 018435 26 SDDSIIERFRAYLQIDTSQP--------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~--------~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
..++++++|++|++|||.++ +++|.++++||.++|+++|++++. +..+|++++++|++++.|+|+|+|
T Consensus 7 ~~~~~~~~l~~lv~i~s~s~~g~~~~~~s~~e~~~~~~i~~~l~~~G~~v~~----~~~gnv~a~~~g~~~~~~~i~l~~ 82 (423)
T 1z2l_A 7 FRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRF----DEVGNLYGRLNGTEYPQEVVLSGS 82 (423)
T ss_dssp HHHHHHHHHHHHHHTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHTTCEEEE----CTTSCEEEEECCSSEEEEEEEEEE
T ss_pred cHHHHHHHHHHHHhcCCCCCCCcccCcCCHHHHHHHHHHHHHHHHcCCEEEE----ecCCcEEEEEcCCCCCCCEEEEEE
Confidence 35789999999999999863 257889999999999999998765 455699999987654348999999
Q ss_pred ecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCc----cccH
Q 018435 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----HDGA 173 (356)
Q Consensus 98 H~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----~~G~ 173 (356)
||||||.+ |..|+|++++++|++++.|++.+..++++|+|+|+++||+++ +.|+
T Consensus 83 H~D~Vp~~----------------------g~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~i~~~~EE~~~~~~g~~Gs 140 (423)
T 1z2l_A 83 HIDTVVNG----------------------GNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGS 140 (423)
T ss_dssp ECCCCTTB----------------------CSSTTHHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSSCCSSSCSCHHH
T ss_pred ecCCCCCC----------------------CccCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCccccccCCCcccH
Confidence 99999964 456999999999999999999887889999999999999852 3488
Q ss_pred HHHhc----cccc-----------------------------cCCceEEEEecCcc---CcC-CcceeEEeeeeeEEEEE
Q 018435 174 EKFAD----SHVF-----------------------------NSLNVGIVLDEGLA---STT-EDYRAFYAERCPWWLVI 216 (356)
Q Consensus 174 ~~~~~----~~~~-----------------------------~~~~~~~~~~~g~~---~p~-~~~~i~~~~~G~~~~~v 216 (356)
+.+.. ++.+ ...+..+.++.... +|+ ....++.+.+|..+++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~p~~~~~~~~~~~~h~~~~~~~e~~~~~~~~~~~~~g~~~~~i 220 (423)
T 1z2l_A 141 KNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTV 220 (423)
T ss_dssp HHHTTCCCGGGTSSCCCSSSCCHHHHHHHTTCCCCSSCCCCCCCEEEEEEEEECCSSHHHHTTCCEEEEEEECEEEEEEE
T ss_pred HHHHcCCCHHHHhhhcCcCCcCHHHHHHHcCCccccccccCCCCceEEEEEEeccCchHHHCCCCeEEEeeEecceEEEE
Confidence 88876 2110 01233333332110 111 13577889999999999
Q ss_pred EEEecCCccC-CCC-CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-CCCCCCccccccCCeE
Q 018435 217 KARGAPGHGA-KLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSEA 292 (356)
Q Consensus 217 ~~~G~~~Hs~-~p~-~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~~~~~~~~~nvip~~~ 292 (356)
+++|+++|++ .|+ .+ ||+..+++++..++++... . ...++++++.+++| . +.|+||++|
T Consensus 221 ~v~G~~~Ha~~~P~~~g~nAi~~~a~~i~~l~~~~~~----~-------~~~~~~~vg~i~gg~~------~~NvIP~~a 283 (423)
T 1z2l_A 221 TLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKR----M-------GDPLVLTFGKVEPRPN------TVNVVPGKT 283 (423)
T ss_dssp EEECCCEETTTSCGGGCCCHHHHHHHHHHHHHHHHHH----H-------CTTCEEECCCEEEESC------CTTEECCEE
T ss_pred EEEeEcCCCCCCccccCcCHHHHHHHHHHHHHHHHHh----c-------CCCceEEEEEEeecCC------cceeECCEE
Confidence 9999999999 685 67 9999999999998765431 1 11468889999986 6 999999999
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 293 EAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 293 ~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
++.+|+|+.+.++.+++.++|++.+.. ...++++++..
T Consensus 284 ~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~g~~~~~~~ 323 (423)
T 1z2l_A 284 TFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDL 323 (423)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 999999999999999999999877652 23566665543
|
| >3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-29 Score=228.28 Aligned_cols=178 Identities=21% Similarity=0.322 Sum_probs=144.5
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
..+++++++++|++|||. ++++.++++||.++|+++|++++.++. ++.+|+++.+ |+ +.|+|+|+|||||||++
T Consensus 4 ~~~~~~~~l~~lv~ips~--s~~e~~~~~~l~~~l~~~G~~~~~~~~-~~~~nv~a~~-g~--~~~~i~l~~H~D~vp~~ 77 (268)
T 3t68_A 4 TDSPVLALAKELISRQSV--TPADAGCQDLMIERLKALGFEIESMVF-EDTTNFWARR-GT--QSPLFVFAGHTDVVPAG 77 (268)
T ss_dssp CCCHHHHHHHHHHTSCCB--TTCCTTHHHHHHHHHHHTTCEECCCEE-TTEEC-CEEE-CS--SSCEEEEEEECCBCCCC
T ss_pred cHHHHHHHHHHHhCCCCC--CCCchHHHHHHHHHHHHCCCeEEEEec-CCccEEEEEe-CC--CCCeEEEEccccccCCC
Confidence 357899999999999997 457788999999999999998775433 3578999998 64 35899999999999997
Q ss_pred C-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccc--cc
Q 018435 106 P-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VF 182 (356)
Q Consensus 106 ~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~~ 182 (356)
+ ++|+.+||++.+ ++|++||||+.|||+|++++|+|++.|++.+..++++|+|+|+++||.|+..|++++++.. ..
T Consensus 78 ~~~~w~~~pf~~~~-~~g~~~g~G~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~~Ga~~~~~~~~~~~ 156 (268)
T 3t68_A 78 PLSQWHTPPFEPTV-IDGFLHGRGAADMKGSLACMIVAVERFIAEHPDHQGSIGFLITSDEEGPFINGTVRVVETLMARN 156 (268)
T ss_dssp CGGGCSSCTTSCEE-ETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCTTSSSCCHHHHHHHHHHHTT
T ss_pred CcccCCCCCCccEE-ECCEEEecCcccchHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCccCcccCHHHHHHHHHhcC
Confidence 6 789999999999 9999999999999999999999999999887778899999999999998645999888752 22
Q ss_pred cCCceEEEEecCccCcCCcceeEEeeeee
Q 018435 183 NSLNVGIVLDEGLASTTEDYRAFYAERCP 211 (356)
Q Consensus 183 ~~~~~~~~~~~g~~~p~~~~~i~~~~~G~ 211 (356)
...+++++++.+..... ...+..+.+|.
T Consensus 157 ~~~d~~i~~ept~~~~~-~~~i~~g~~G~ 184 (268)
T 3t68_A 157 ELIDMCIVGEPSSTLAV-GDVVKNGRRGG 184 (268)
T ss_dssp CCCCEEEECSCCBSSST-TSEEEECCGGG
T ss_pred CCCCEEEEeCCCCCccC-CceeEEecCCC
Confidence 34678888765432111 12355666665
|
| >4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-29 Score=226.56 Aligned_cols=177 Identities=20% Similarity=0.313 Sum_probs=144.6
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~ 106 (356)
.+++++++++|++|||+ ++++.++++||.++|+++|++++.++. ++.+|+++.+ |. +.|+|+|+||+||||+++
T Consensus 5 ~~~~~~~l~~lv~ips~--s~~e~~~~~~l~~~l~~~G~~~~~~~~-~~~~nv~a~~-g~--~~~~i~l~~H~D~vp~~~ 78 (269)
T 4h2k_A 5 KEKVVSLAQDLIRRPSI--SPNDEGCQQIIAERLEKLGFQIEWMPF-NDTLNLWAKH-GT--SEPVIAFAGHTDVVPTGD 78 (269)
T ss_dssp HHHHHHHHHHHHTSCCB--TTCCTTHHHHHHHHHHTTTCEEEECCB-TTBCEEEEEE-CS--SSCEEEEEEECCBCCCCC
T ss_pred HHHHHHHHHHHhCCCCC--CCCcHHHHHHHHHHHHHcCCeEEEEEc-CCceEEEEEe-CC--CCCEEEEEeeecccCCCC
Confidence 46899999999999997 457788999999999999998876433 3678999998 64 358999999999999976
Q ss_pred -CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccc--ccc
Q 018435 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VFN 183 (356)
Q Consensus 107 -~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~~~ 183 (356)
++|+.+||++.+ ++|++||||+.|||+|++++|+|++.|++.+..++++|+|+|+++||.|+..|++.+++.. ...
T Consensus 79 ~~~w~~~pf~~~~-~~g~~~grG~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~Ga~~~~~~~~~~~~ 157 (269)
T 4h2k_A 79 ENQWSSPPFSAEI-IDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTIHVVETLMARDE 157 (269)
T ss_dssp GGGCSSCTTSCCE-ETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCTTSHHHHHHHHHHTTC
T ss_pred cccccCCCCCeEE-ECCEEEeCCcccChHHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCcccCHHHHHHHHHhcCC
Confidence 789999999999 9999999999999999999999999999887778899999999999998645999888642 123
Q ss_pred CCceEEEEecCccCcCCcceeEEeeeee
Q 018435 184 SLNVGIVLDEGLASTTEDYRAFYAERCP 211 (356)
Q Consensus 184 ~~~~~~~~~~g~~~p~~~~~i~~~~~G~ 211 (356)
..+++++.+.......+ ..+..+.+|.
T Consensus 158 ~~d~~i~~Ept~~~~~~-~~i~~g~~G~ 184 (269)
T 4h2k_A 158 KITYCMVGEPSSAKNLG-DVVKNGRRGG 184 (269)
T ss_dssp CCCEEEECCCCBSSSTT-SEEECSCTTC
T ss_pred CCCEEEEECCCCCCcCC-ceeEEecccc
Confidence 46778887654321111 2455666655
|
| >2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-22 Score=189.49 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=127.3
Q ss_pred HHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCC-------
Q 018435 33 RFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE------- 105 (356)
Q Consensus 33 ~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~------- 105 (356)
+|++|+++||+ ++.|.++++++.++|+++|++++. +..+|+++.++|++ +.|+|+|.||+|+|+..
T Consensus 3 ~l~~L~~~~s~--sg~e~~~~~~l~~~l~~~g~~~~~----d~~gnlia~~~g~~-~~~~v~l~aH~D~v~~~v~~i~~~ 75 (340)
T 2fvg_A 3 YLKELSMMPGV--SGDEGKVRDFIKSKIEGLVDNLYT----DVLGNLIALKRGRD-SSKKLLVSAHMDEVGFVVSKIEKD 75 (340)
T ss_dssp CHHHHHHSCCB--TTCCHHHHHHHHHHHGGGSSEEEE----CTTSCEEEEECCSE-EEEEEEEEEECCBCEEEEEEECTT
T ss_pred HHHHHHcCCCC--CCchHHHHHHHHHHHHhhCCEEEE----eCCCcEEEEecCCC-CCceEEEEeccCcCcEEEEEECCC
Confidence 58899999996 678899999999999999998775 56789999997753 24789999999999930
Q ss_pred -------CCCCCCCCCCee-----------------------------------------------eCCC----------
Q 018435 106 -------PSKWSHHPFGAH-----------------------------------------------LDSQ---------- 121 (356)
Q Consensus 106 -------~~~w~~~P~~~~-----------------------------------------------~~~~---------- 121 (356)
..+|..+||.+. +..+
T Consensus 76 G~l~~~~~Gg~~~~~~~~~~v~v~~~~g~i~~~~~h~~~~~~~~~~~~~~l~id~g~~s~~e~~~~i~~gd~v~~~~~~~ 155 (340)
T 2fvg_A 76 GKVSFLPVGGVDPRILPGKVVQVKNLKGVIGYRPIHLQRDEENTPPRFENLRIDFGFSSADEAKKYVSIGDYVSFVSDYI 155 (340)
T ss_dssp SCEEEEEESCCCGGGCTTCEEEETTEEEEEEECC-----------CCSTTEEEECSCSSHHHHHTTCCTTCEEEECCCCE
T ss_pred CEEEEEeeCCcccccccCCEEEECcEEEEEcCCCccccchhhccCCCcccEEEEeCCCCHHHHHhhCCCCCEEEEccCce
Confidence 137999998763 3125
Q ss_pred ---CeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCccCc
Q 018435 122 ---GNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLAST 198 (356)
Q Consensus 122 ---g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p 198 (356)
+++||| +.|||++++++|++++.|+ .++++|+|+|+++||.|+ .|++++.+. . ..++++++|....
T Consensus 156 ~~~~~i~gr-a~D~k~g~a~~l~a~~~l~----~~~~~i~~~~~~~EE~G~-~G~~~~~~~--~-~~~~~i~~d~~~~-- 224 (340)
T 2fvg_A 156 EKNGRAVGK-AFDDRAGCSVLIDVLESGV----SPAYDTYFVFTVQEETGL-RGSAVVVEQ--L-KPTCAIVVETTTA-- 224 (340)
T ss_dssp EETTEEEES-CHHHHHHHHHHHHHHHTCC----CCSEEEEEEEECCCC------CHHHHHH--H-CCSEEEEEEEEEE--
T ss_pred eecCEEeec-cCccHHHHHHHHHHHHHhh----ccCCcEEEEEEcccccch-hhhHHHhhc--c-CCCEEEEEecccC--
Confidence 999999 9999999999999999886 367899999999999986 699988763 2 3467777764211
Q ss_pred CCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CH
Q 018435 199 TEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SA 233 (356)
Q Consensus 199 ~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-na 233 (356)
. .+.|++.|++.|..| |+
T Consensus 225 ----~-------------~~~G~~~h~~~~~~G~g~ 243 (340)
T 2fvg_A 225 ----G-------------DNPELEERKWATHLGDGP 243 (340)
T ss_dssp ----C-------------SCSTTCCSSSSCCTTSCC
T ss_pred ----C-------------CCCCCccccCCcccCCCc
Confidence 0 457888887777655 54
|
| >2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.8e-21 Score=179.09 Aligned_cols=154 Identities=19% Similarity=0.264 Sum_probs=121.8
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC---
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV--- 102 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv--- 102 (356)
..++++++|++|++|||+ ++.|.++++++.++|+++|++++. +..+|+++.++|.+ +.|+|+|.||+|||
T Consensus 4 ~~~~~~~~l~~lv~i~s~--s~~e~~~~~~l~~~l~~~g~~~~~----d~~gnl~a~~~g~~-~~~~ill~~H~Dtv~~~ 76 (349)
T 2gre_A 4 HTKETMELIKELVSIPSP--SGNTAKIINFIENYVSEWNVETKR----NNKGALILTVKGKN-DAQHRLLTAHVDTLGAM 76 (349)
T ss_dssp HHHHHHHHHHHHHTSCCB--TTCCHHHHHHHHHHTTTSSSEEEE----CSSSCEEEEECCSE-EEEEEEEEEECCBCEEE
T ss_pred cHHHHHHHHHHHHhCCCC--CccHHHHHHHHHHHHHHhCCEEEE----ecCCcEEEEecCCC-CCceEEEEeccccccee
Confidence 357899999999999996 567889999999999999998775 46789999997753 24789999999999
Q ss_pred -------------CCCCCCCCCCCCCee------------------------------------------e---------
Q 018435 103 -------------PSEPSKWSHHPFGAH------------------------------------------L--------- 118 (356)
Q Consensus 103 -------------p~~~~~w~~~P~~~~------------------------------------------~--------- 118 (356)
|.+ +|..+||.+. +
T Consensus 77 v~~i~~~G~l~~~~~G--g~~~~~~~~~~v~i~~~~g~~~~g~i~~~~~~~h~~~~~~~~~~~~~~l~~~id~g~~~~~~ 154 (349)
T 2gre_A 77 VKEIKPDGRLSLSMIG--GFRWNSVEGEYCEIETSSGKTYTGTILMHQTSVHVYKDAGEAKRDEKNIEVRIDERVFSADE 154 (349)
T ss_dssp EEEECTTSCEEEEEES--SCCGGGTTTCEEEEECTTSCEEEEEEECC-------------------CEEEESSCCCSHHH
T ss_pred EEEECCCCeEEEEecC--CCccccccCcEEEEEcCCCCEEEEEEeCCCCCccccchhccCCCCHHHceEEeccCCCCHHH
Confidence 433 4776665321 0
Q ss_pred --------------------CCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhc
Q 018435 119 --------------------DSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD 178 (356)
Q Consensus 119 --------------------~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~ 178 (356)
..++++||| +.|||+|++++|++++.|++.+..++++|+++|+++||.|+ .|++++ .
T Consensus 155 ~~~~gi~~gd~v~~~~~~~~~~~~~i~gr-~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~G~-~g~~~~-~ 231 (349)
T 2gre_A 155 VRELGIEVGDFVSFDPRVQITESGYIKSR-HLDDKVSVAILLKLIKRLQDENVTLPYTTHFLISNNEEIGY-GGNSNI-P 231 (349)
T ss_dssp HHHTTCCTTCEEEECCCCEECTTSEEEES-CCTTHHHHHHHHHHHHHHHHHTCCCSEEEEEEEESCC-----CCCCCC-C
T ss_pred HHHcCCCCCCEEEEccccEEccCCeEEEe-eccchHHHHHHHHHHHHHHhccCCCCceEEEEEECcccCCc-hhhccc-c
Confidence 035899999 69999999999999999998887788999999999999986 688765 1
Q ss_pred cccccCCceEEEEecCc
Q 018435 179 SHVFNSLNVGIVLDEGL 195 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~g~ 195 (356)
...++++++|.+.
T Consensus 232 ----~~~~~~i~~D~~~ 244 (349)
T 2gre_A 232 ----EETVEYLAVDMGA 244 (349)
T ss_dssp ----TTEEEEEEECCCC
T ss_pred ----cCCCEEEEEeccc
Confidence 2357888888754
|
| >1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-20 Score=171.61 Aligned_cols=156 Identities=21% Similarity=0.243 Sum_probs=122.2
Q ss_pred CChhHHHHHHHhhhcccCCC-CCcChhHHHHHHHHHHHHCC--Cc-eEEEeec---CCCceEEEEecCCCCCCCcEEEEe
Q 018435 25 KSDDSIIERFRAYLQIDTSQ-PNPDYTNASKFILAQAEALS--LE-SQTLEFA---KNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s-~~~~e~~~~~~l~~~l~~~g--~~-~~~~~~~---~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
.+.++++++|++|++|++.. .++.+.++++||.++|+++| ++ ++..... .+.+||+++++|+++..++|++.|
T Consensus 17 ~~~~~~~~~l~~L~~i~sr~~~s~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~nvi~~~~g~~~~~~~v~l~a 96 (299)
T 1rtq_A 17 VDASQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIGG 96 (299)
T ss_dssp CCHHHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEETTEEEEEEEEEECCSSEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHhCcCCCCCCCchHHHHHHHHHHHHHHhcCCcccceeeeeccCCCCCceEEEEEECCCCCCCEEEEEe
Confidence 34689999999999999752 35678899999999999986 33 3321111 135899999988652347899999
Q ss_pred ecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHh
Q 018435 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (356)
Q Consensus 98 H~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (356)
|+||||. .| .++.+||||+.|||+|++++|++++.|++.+..++++|+|+|+++||.|. .|+++++
T Consensus 97 H~D~v~~---~~----------~~~~~~~~Ga~D~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~-~Gs~~~~ 162 (299)
T 1rtq_A 97 HLDSTIG---SH----------TNEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAEEVGL-RGSQDLA 162 (299)
T ss_dssp ECCCCSS---TT----------CCTTCCCCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTS-HHHHHHH
T ss_pred ccccCCC---cC----------cCCCcccCCCcccHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCccCCc-hhHHHHH
Confidence 9999983 35 34578999999999999999999999999887889999999999999985 6999998
Q ss_pred cccc--ccCCceEEEEecC
Q 018435 178 DSHV--FNSLNVGIVLDEG 194 (356)
Q Consensus 178 ~~~~--~~~~~~~~~~~~g 194 (356)
++.. ..+...++.+|..
T Consensus 163 ~~~~~~~~~~~~~i~~D~~ 181 (299)
T 1rtq_A 163 NQYKSEGKNVVSALQLDMT 181 (299)
T ss_dssp HHHHHTTCEEEEEEECSCC
T ss_pred HhhhhccccEEEEEEecCC
Confidence 7632 2234456666653
|
| >1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-20 Score=168.01 Aligned_cols=149 Identities=18% Similarity=0.294 Sum_probs=121.9
Q ss_pred CCChhHHHHHHHhhhcccCCCC------CcChhHHHHHHHHHHHHCCCceEEEeecC---CCceEEEEecCCCCCCCcEE
Q 018435 24 AKSDDSIIERFRAYLQIDTSQP------NPDYTNASKFILAQAEALSLESQTLEFAK---NKPLILLKWPGSNPQLPSIL 94 (356)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~------~~~e~~~~~~l~~~l~~~g~~~~~~~~~~---~~~nv~~~~~g~~~~~~~il 94 (356)
....++++++|++|++|+|.++ +.++.++++||.++|+++|++++...... ..+||++.++|+++ .++|+
T Consensus 3 ~i~~~~~~~~l~~L~~i~s~s~~~r~~~~~~e~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~nvi~~~~g~~~-~~~i~ 81 (284)
T 1tkj_A 3 DIPLANVKAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSGGATGYNLIANWPGGDP-NKVLM 81 (284)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHTCEEEEEEEEETTEEEEEEEEECSCSEE-EEEEE
T ss_pred cCCHHHHHHHHHHHHcccccCCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeccCCCCceeEEEEEeCCCC-CCEEE
Confidence 3457899999999999999753 12678999999999999999887654421 25699999987643 37899
Q ss_pred EEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHH
Q 018435 95 LNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (356)
Q Consensus 95 ~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (356)
+.||+|+||.+ ||+.|||+|++++|++++.|++.+..++++|+|+|+++||.|. .|++
T Consensus 82 l~aH~D~v~~g---------------------~Ga~D~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~-~Gs~ 139 (284)
T 1tkj_A 82 AGAHLDSVSSG---------------------AGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGL-IGSK 139 (284)
T ss_dssp EEEECCCCTTS---------------------CCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTS-HHHH
T ss_pred EEeecCCCCCC---------------------CCCccChHHHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCC-cCHH
Confidence 99999999864 4899999999999999999999887889999999999999985 6999
Q ss_pred HHhcccc---ccCCceEEEEecCc
Q 018435 175 KFADSHV---FNSLNVGIVLDEGL 195 (356)
Q Consensus 175 ~~~~~~~---~~~~~~~~~~~~g~ 195 (356)
+++++.. ..++..++++|..+
T Consensus 140 ~~~~~~~~~~~~~~~~~i~~D~~g 163 (284)
T 1tkj_A 140 FYVNNLPSADRSKLAGYLNFDMIG 163 (284)
T ss_dssp HHHHHSCHHHHTTEEEEEEECCCC
T ss_pred HHHhhCccchhhcEEEEEEecCCC
Confidence 9987632 13456677787543
|
| >2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=168.24 Aligned_cols=144 Identities=18% Similarity=0.226 Sum_probs=118.6
Q ss_pred HHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCC------
Q 018435 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP------ 103 (356)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp------ 103 (356)
++++|++|+++||+ ++.|.++++++.++|+++|+ ++. ++.+|+++.++| + .|+|+|.||+|+|+
T Consensus 4 ~~~~l~~l~~~~s~--sg~e~~~~~~l~~~l~~~g~-~~~----d~~gnlia~~~~-~--~~~i~l~aH~D~v~~~v~~i 73 (332)
T 2wyr_A 4 MIEKLKKFTQIPGI--SGYEERIREEIIREIKDFAD-YKV----DAIGNLIVELGE-G--EERILFMAHMDEIGLLITGI 73 (332)
T ss_dssp HHHHHHHHHTSCCB--TTCCHHHHHHHHHHHTTTCC-CEE----CTTCCEEEEEES-S--SEEEEEEEECCBCEEEEEEE
T ss_pred HHHHHHHHHcCCCC--CCcHHHHHHHHHHHHhhcCc-EEE----cCCCeEEEEecC-C--CceEEEEeccCcccEEEEEE
Confidence 68999999999996 57889999999999999999 654 678999999876 2 47999999999995
Q ss_pred ----------CCCCCCCC--------------------------------------------------------------
Q 018435 104 ----------SEPSKWSH-------------------------------------------------------------- 111 (356)
Q Consensus 104 ----------~~~~~w~~-------------------------------------------------------------- 111 (356)
.+ +|..
T Consensus 74 ~~~G~l~~~~~G--g~~~~~~~~~~v~v~~~~g~~~g~i~~~~~h~~~~~~~~~~~~~~~~id~g~~~~~~~~~~i~~Gd 151 (332)
T 2wyr_A 74 TDEGKLRFRKVG--GIDDRLLYGRHVNVVTEKGILDGVIGATPPHLSLERDKSVIPWYDLVIDIGAESKEEALELVKPLD 151 (332)
T ss_dssp CTTSCEEEEEES--CCCGGGTTTEEEEEECSSCEEEEEECCCCTTC-----CCCCCGGGCCBBCSCSSHHHHHHHCCTTC
T ss_pred CCCCeEEEEecC--CcChhhccCCEEEEEcCCCCEEEEEcCCCcccChhhhccCCChHHEEEEeCCCCHHHHHhhCCCCC
Confidence 43 2432
Q ss_pred -----CCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCc
Q 018435 112 -----HPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (356)
Q Consensus 112 -----~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~ 186 (356)
+||.. . .++++||| +.|||+|++++|++++.|++.+ ++++|.|+|+++||.|+ .|++++.+. + ..+
T Consensus 152 ~~~~~~~~~~-~-~~~~i~gr-a~D~k~g~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~G~-~G~~~~~~~--~-~~~ 222 (332)
T 2wyr_A 152 FAVFKKHFSV-L-NGKYVSTR-GLDDRFGVVALIEAIKDLVDHE--LEGKVIFAFTVQEEVGL-KGAKFLANH--Y-YPQ 222 (332)
T ss_dssp EEEECCCCEE-E-TTTEEECT-THHHHHHHHHHHHHHHTTTTSC--CSSEEEEEEESCGGGTS-HHHHHHTTT--C-CCS
T ss_pred EEEEccccEE-e-cCCeEEcc-cCCcHHHHHHHHHHHHHHhhcC--CCceEEEEEECccccCc-chHHHHhcc--c-CCC
Confidence 13332 3 68999999 9999999999999999998765 56899999999999996 699988752 2 357
Q ss_pred eEEEEecC
Q 018435 187 VGIVLDEG 194 (356)
Q Consensus 187 ~~~~~~~g 194 (356)
+++++|..
T Consensus 223 ~~i~~d~~ 230 (332)
T 2wyr_A 223 YAFAIDSF 230 (332)
T ss_dssp EEEEECCE
T ss_pred EEEEEecc
Confidence 88888764
|
| >1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=169.80 Aligned_cols=153 Identities=17% Similarity=0.184 Sum_probs=120.6
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCC--
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS-- 104 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~-- 104 (356)
.++++++|++|+++||+ ++.|.+++++|.++|+++|++++. +..+|+++.++|+. +.|+|+|.||+|+|+.
T Consensus 6 ~~~~~~~l~~L~~~~s~--sg~e~~~~~~l~~~l~~~g~~~~~----d~~gnlia~~~g~~-~~~~vll~aH~D~v~~~v 78 (373)
T 1vhe_A 6 LDETLTMLKDLTDAKGI--PGNEREVRQVMKSYIEPFADEVTT----DRLGSLIAKKTGAE-NGPKIMIAGHLDEVGFMV 78 (373)
T ss_dssp CCHHHHHHHHHHHSCCC--TTCCHHHHHHHHHHHGGGCSEEEE----CTTCCEEEEEESST-TSCEEEEEEECCCCEEEE
T ss_pred HHHHHHHHHHHHcCCCC--CCchHHHHHHHHHHHHhhCCEEEE----cCCCcEEEEecCCC-CCceEEEEecCCcCCEEE
Confidence 35799999999999996 678899999999999999998765 57789999988763 3489999999999982
Q ss_pred --------------C----------------CC-------CCCCCC----------------------------------
Q 018435 105 --------------E----------------PS-------KWSHHP---------------------------------- 113 (356)
Q Consensus 105 --------------~----------------~~-------~w~~~P---------------------------------- 113 (356)
+ .+ .|..+.
T Consensus 79 ~~i~~~G~l~~~~~Gg~~~~~~~~~~v~v~~~~g~~~g~i~~~~~h~~~~~~~~~~~~~~~l~id~g~~s~~~~~~~gi~ 158 (373)
T 1vhe_A 79 TQITDKGFIRFQTVGGWWAQVMLAQRVTIVTKKGEITGVIGSKPPHILSPEARKKSVEIKDMFIDIGASSREEALEWGVL 158 (373)
T ss_dssp EEECTTSCEEEEEESCCCGGGTTTCEEEEEETTEEEEEEEECCCGGGSCTTTTTSCCCGGGCEEECSCSSHHHHHHTTCC
T ss_pred EEECCCCeEEEEEeCCcchhhccCCEEEEEeCCCcEEEEEcCCCcccCchhhccCCCChhHeEEEecCCCHHHHHHcCCC
Confidence 1 11 143111
Q ss_pred ----------CCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccccc
Q 018435 114 ----------FGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN 183 (356)
Q Consensus 114 ----------~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~ 183 (356)
|+... +++++||| +.|||+|++++|++++.|++.+ ++++|+|+|+++||.|+ .|++++... +
T Consensus 159 ~Gd~v~~~~~~~~~~-~~~~i~gr-~~D~k~g~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~G~-~G~~~~~~~--~- 230 (373)
T 1vhe_A 159 PGDMIVPHFEFTVMN-NEKFLLAK-AWDNRIGCAIAIDVLRNLQNTD--HPNIVYGVGTVQEEVGL-RGAKTAAHT--I- 230 (373)
T ss_dssp TTCEEEECCCCEECS-STTEEEET-THHHHHHHHHHHHHHHHHHTSC--CSSEEEEEEESCCTTTS-HHHHHHHHH--H-
T ss_pred CCCEEEEccccEEec-CCCeEEec-cCccHHHHHHHHHHHHHHhhcC--CCceEEEEEECCcccCh-hhHHHHhcc--c-
Confidence 11111 27899999 6899999999999999998765 56899999999999996 699887542 2
Q ss_pred CCceEEEEecC
Q 018435 184 SLNVGIVLDEG 194 (356)
Q Consensus 184 ~~~~~~~~~~g 194 (356)
..++++++|.+
T Consensus 231 ~~d~~i~~d~~ 241 (373)
T 1vhe_A 231 QPDIAFGVDVG 241 (373)
T ss_dssp CCSEEEEEEEE
T ss_pred CCCEEEEEecc
Confidence 35778888754
|
| >3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=158.59 Aligned_cols=159 Identities=17% Similarity=0.180 Sum_probs=127.7
Q ss_pred CCChhHHHHHHHhhhcccCC-CCCcChhHHHHHHHHHHHHCCCceEEEeec----CC----CceEEEEecCCCCCCCcEE
Q 018435 24 AKSDDSIIERFRAYLQIDTS-QPNPDYTNASKFILAQAEALSLESQTLEFA----KN----KPLILLKWPGSNPQLPSIL 94 (356)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~-s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~----~~----~~nv~~~~~g~~~~~~~il 94 (356)
....+++++.|++|+++.+. ..+.++.++++||.++|+++|++++..... .+ ..||+++++|+. .+.|+
T Consensus 21 ~~~~~~~~~~l~~l~~~~~R~~~s~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~~g~~~~~~Nvia~~~g~~--~~~il 98 (309)
T 3tc8_A 21 DFNADSAYAYVANQVAFGPRVPNTAAHKACGDYLASELKRFGAKVYQQEAILTAYDGTKLEARNIIGSFDPEN--SKRVL 98 (309)
T ss_dssp CCCHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEESTTC--SSEEE
T ss_pred ccCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEeeccccCCCcccceEEEEEECCCC--CceEE
Confidence 45678999999999988764 235678999999999999999988764432 12 479999999863 47999
Q ss_pred EEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCc-----
Q 018435 95 LNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----- 169 (356)
Q Consensus 95 ~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----- 169 (356)
+.||+|+|+.++ .+||. + +++.+| +|+.||++|+|++|++++.|++.+ ++++|.|+|+.+||.|.
T Consensus 99 l~aH~Dsv~~~~----~~p~~--~-~~~~~~-~Ga~D~~sGva~~Le~ar~l~~~~--~~~~i~f~~~~~EE~Gl~~~~~ 168 (309)
T 3tc8_A 99 LFAHWDSRPYSD----HDPDP--S-KHRTPL-DGADDGGSGVGALLEIARQIGQKA--PGIGIDIIFFDAEDYGTPEFVT 168 (309)
T ss_dssp EEEECCCCSCCT----TCSSG--G-GTTSCC-CCTTTTHHHHHHHHHHHHHHHHSC--CSSEEEEEEECSCSCSCCTTCC
T ss_pred EEecccCCCCCC----CCccc--c-CCCccc-cCcccchHhHHHHHHHHHHHHhCC--CCCcEEEEEECccccccccccc
Confidence 999999999763 35775 3 677788 999999999999999999999875 68999999999999984
Q ss_pred -------cccHHHHhccccc--cCCceEEEEecC
Q 018435 170 -------HDGAEKFADSHVF--NSLNVGIVLDEG 194 (356)
Q Consensus 170 -------~~G~~~~~~~~~~--~~~~~~~~~~~g 194 (356)
+.|++++.++... ..+...+.+|..
T Consensus 169 ~~~~ds~~~GS~~~~~~~~~~~~~~~~~inlD~~ 202 (309)
T 3tc8_A 169 DYTPDSWCLGTQFWAKNPHVPNYTAEYGILLDMV 202 (309)
T ss_dssp SCCTTCSCHHHHHHHHSCSSTTCCCSEEEEEESC
T ss_pred cccccccchhHHHHHhCCCccccceEEEEEeccc
Confidence 1699999986433 235567777753
|
| >3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-18 Score=157.45 Aligned_cols=160 Identities=18% Similarity=0.175 Sum_probs=112.9
Q ss_pred CCCChhHHHHHHHhhhcccCCC-CCcChhHHHHHHHHHHHHCCCceEEEeec----CC----CceEEEEecCCCCCCCcE
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQ-PNPDYTNASKFILAQAEALSLESQTLEFA----KN----KPLILLKWPGSNPQLPSI 93 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s-~~~~e~~~~~~l~~~l~~~g~~~~~~~~~----~~----~~nv~~~~~g~~~~~~~i 93 (356)
.....+++++.|++|++|++.. .+.++.++++||.++|+++|++++..... .+ ..||+++++|+. .+.|
T Consensus 22 ~~~~~~~~~~~l~~L~~~~~R~~gs~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~~g~~~~~~Nvia~~~g~~--~~~i 99 (314)
T 3gux_A 22 PEFDADSAYQYIQVQADFGPRVPNTQAHKECGEYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYKPES--KKRI 99 (314)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEESTTC--SSEE
T ss_pred CCCCHHHHHHHHHHHHccCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeeccccCCCcccceEEEEEECCCC--CceE
Confidence 3456799999999999998753 35678999999999999999988764432 12 479999999863 4799
Q ss_pred EEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCc----
Q 018435 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG---- 169 (356)
Q Consensus 94 l~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~---- 169 (356)
++.||+|+|+.++ .+|+. . .++. .++|+.||++|++++|++++.|++.+ ++++|.|+++.+||.|.
T Consensus 100 ll~aH~Dsv~~~~----~~p~~--~-~~~~-~~~GA~D~~sGva~~Le~ar~l~~~~--~~~~i~fv~~~~EE~Gl~~~~ 169 (314)
T 3gux_A 100 LLCAHWDSRPYAD----NDPDP--K-NHHT-PILGVNDGASGVGVLLEIARQIQKEQ--PALGIDIVFFDSEDYGIPEFY 169 (314)
T ss_dssp EEEEECCCCC----------------------------CHHHHHHHHHHHHHHHHSC--CSSEEEEEEECSCCC------
T ss_pred EEEccccCCCcCC----CCccc--c-cCCc-ccCCCcccHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCccccccccc
Confidence 9999999999763 24553 2 3344 56999999999999999999999875 68999999999999984
Q ss_pred ---------cccHHHHhccccc--cCCceEEEEecC
Q 018435 170 ---------HDGAEKFADSHVF--NSLNVGIVLDEG 194 (356)
Q Consensus 170 ---------~~G~~~~~~~~~~--~~~~~~~~~~~g 194 (356)
..|++++.++... ..+...+.+|..
T Consensus 170 ~~~~~~ds~~~GS~~~~~~~~~~~~~~~~~inlDm~ 205 (314)
T 3gux_A 170 DGKYKQDTWCLGSQYWARTPHVQNYNARYGILLDMV 205 (314)
T ss_dssp -----CTTSCHHHHHHHHSCSSTTCCCSEEEEEESC
T ss_pred cccccccccchhHHHHHhCCcccccceeEEEEEecc
Confidence 1699999986433 345567777753
|
| >1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=158.25 Aligned_cols=144 Identities=16% Similarity=0.179 Sum_probs=115.2
Q ss_pred HHHHHHhhhcccCCCCCcCh-hHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCC-----
Q 018435 30 IIERFRAYLQIDTSQPNPDY-TNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP----- 103 (356)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e-~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp----- 103 (356)
++++|++|+++||+ ++.| .++++++.++|+++|++++. +..+|+++.++|+ .|+|+|.||+|+|+
T Consensus 8 ~~~~l~~L~~~~s~--sg~e~~~~~~~l~~~l~~~g~~~~~----d~~gnlia~~~g~---~~~i~l~aH~D~v~~~v~~ 78 (353)
T 1y0y_A 8 DYELLKKVVEAPGV--SGYEFLGIRDVVIEEIKDYVDEVKV----DKLGNVIAHKKGE---GPKVMIAAHMDQIGLMVTH 78 (353)
T ss_dssp CHHHHHHHHHSCCB--TTCGGGTHHHHHHHHHGGGSSEEEE----CTTCCEEEEECCS---SCEEEEEEECCBCEEEEEE
T ss_pred HHHHHHHHHhCCCC--CccchHHHHHHHHHHHHhhCCeEEE----cCCCCEEEEecCC---CccEEEEeccCcccEEEEE
Confidence 67899999999996 6788 89999999999999998775 6788999998765 38999999999995
Q ss_pred -----------CCCCCCCCCCCCe--------------------------------------------------------
Q 018435 104 -----------SEPSKWSHHPFGA-------------------------------------------------------- 116 (356)
Q Consensus 104 -----------~~~~~w~~~P~~~-------------------------------------------------------- 116 (356)
.+ +|...+|.+
T Consensus 79 i~~~G~l~~~~~G--g~~~~~~~~~~v~v~~~~g~~~~g~i~~~~~h~~~~~~~~~~~~~~~l~~d~g~~~~~~~~~~gi 156 (353)
T 1y0y_A 79 IEKNGFLRVAPIG--GVDPKTLIAQRFKVWIDKGKFIYGVGASVPPHIQKPEDRKKAPDWDQIFIDIGAESKEEAEDMGV 156 (353)
T ss_dssp ECTTSCEEEEEES--SCCGGGTTTCEEEEEEETTEEEEEEEEC-------------CCCGGGCEEECSCSSHHHHHHTTC
T ss_pred ECCCceEEEEEeC--CcchhhccCCEEEEEeCCCcEEEEEEeCCCcccCchhhccCCCChHHeEEEeCCCCHHHHHHcCC
Confidence 33 343222110
Q ss_pred -------------eeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccccc
Q 018435 117 -------------HLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN 183 (356)
Q Consensus 117 -------------~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~ 183 (356)
.. .++++||| +.|||+|++++|++++.|++ ++++|+++|+++||.|+ .|++++... +
T Consensus 157 ~~Gd~v~~~~~~~~~-~~~~i~gr-a~D~k~g~a~~l~a~~~l~~----~~~~i~~~~~~~EE~g~-~G~~~~~~~--~- 226 (353)
T 1y0y_A 157 KIGTVITWDGRLERL-GKHRFVSI-AFDDRIAVYTILEVAKQLKD----AKADVYFVATVQEEVGL-RGARTSAFG--I- 226 (353)
T ss_dssp CTTCEEEECCCCEEE-TTTEEEET-THHHHHHHHHHHHHHHHCCS----CSSEEEEEEESCCTTTS-HHHHHHHHH--H-
T ss_pred CCCCEEEeccCcEEe-cCCeEEec-cCccHHHHHHHHHHHHHhhc----CCCeEEEEEECCcccch-hHHHHHhhc--c-
Confidence 11 25789999 89999999999999998865 57899999999999986 699888642 2
Q ss_pred CCceEEEEecC
Q 018435 184 SLNVGIVLDEG 194 (356)
Q Consensus 184 ~~~~~~~~~~g 194 (356)
..++++++|..
T Consensus 227 ~~~~~i~~d~~ 237 (353)
T 1y0y_A 227 EPDYGFAIDVT 237 (353)
T ss_dssp CCSEEEEEEEE
T ss_pred CCCEEEEEecc
Confidence 35678888754
|
| >2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-17 Score=152.64 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=108.0
Q ss_pred ChhHH-HHHHHhhhcccCCCCCcChhHHHHHHHHHHHH--CCCceEEEeecC-------CCceEEEEecCCCCCCCcEEE
Q 018435 26 SDDSI-IERFRAYLQIDTSQPNPDYTNASKFILAQAEA--LSLESQTLEFAK-------NKPLILLKWPGSNPQLPSILL 95 (356)
Q Consensus 26 ~~~~~-~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~--~g~~~~~~~~~~-------~~~nv~~~~~g~~~~~~~il~ 95 (356)
+.+++ .++|++|+..+.. .+.+++++++||.++|++ +|++++...... ..+||+++++|+ ..+.|++
T Consensus 29 ~~~~~~~~~l~~L~~~r~~-~s~~~~~~~~~l~~~l~~~~~G~~v~~~~~~~~~~~g~~~~~Nvi~~~~g~--~~~~i~l 105 (329)
T 2afw_A 29 SISEMWQNDLQPLLIERYP-GSPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSFSNIISTLNPT--AKRHLVL 105 (329)
T ss_dssp CHHHHHHHTTGGGCSCCCT-TSHHHHHHHHHHHHHHHTSSSCCEEEEEEEEECCTTSSEEEEEEEEESSTT--SSEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHHHhhCCCCEEEEEEEEecCCCCCceEeEEEEEECCC--CCcEEEE
Confidence 46788 8999999755543 245677899999999999 999887644322 258999999886 3479999
Q ss_pred EeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHc--------CCCCcccEEEEEeecccc
Q 018435 96 NSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS--------GFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 96 ~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~--------~~~~~~~i~~~~~~~EE~ 167 (356)
.||+|+|+.+ .| ++++ |+|+.||++|+|++|++++.|++. +..++++|.|+|+.+||.
T Consensus 106 ~aH~Dsv~~~--~~-----------~~~~-~~Ga~D~~sGva~~le~ar~l~~~~~~~~~~~g~~~~~~i~~~~~~~EE~ 171 (329)
T 2afw_A 106 ACHYDSKYFS--HW-----------NNRV-FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEA 171 (329)
T ss_dssp EEECCCCCCC--CB-----------TTBC-CCCTTTTHHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEEESCCSC
T ss_pred EEeccCCCcC--cc-----------cCcC-CCCcccchhhHHHHHHHHHHHHHHHhhhcccccCCCCccEEEEEecCccc
Confidence 9999999975 33 2444 789999999999999999999875 346789999999999997
Q ss_pred --------CccccHHHHhcc
Q 018435 168 --------GGHDGAEKFADS 179 (356)
Q Consensus 168 --------g~~~G~~~~~~~ 179 (356)
| +.|+++++++
T Consensus 172 ~~~~~~~~g-l~Gs~~~~~~ 190 (329)
T 2afw_A 172 FLHWSPQDS-LYGSRHLAAK 190 (329)
T ss_dssp SSSCCSSSS-CHHHHHHHHH
T ss_pred ccccCCCcc-chhHHHHHHH
Confidence 5 5799998875
|
| >1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.7e-16 Score=144.96 Aligned_cols=152 Identities=17% Similarity=0.139 Sum_probs=113.8
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCC---
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS--- 104 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~--- 104 (356)
.+++++|++|+++||+ ++.|.++++++.++|+++|++++. +..+|+++.++|++ .|.|+|.||+|||+.
T Consensus 5 ~~~~~~l~~Lv~~~s~--sg~e~~~~~~l~~~l~~~g~~~~~----d~~gnlia~~~g~~--~~~i~l~aH~DtV~~~v~ 76 (346)
T 1vho_A 5 METGKLLMELSNLDGP--SGYETNVVSYIKSVIEPFVDEAKT----TRHGSLIGYKKGKG--IGKLAFFAHVDEIGFVVS 76 (346)
T ss_dssp CCHHHHHHHHHHSCCB--TTCCHHHHHHHHHHHGGGCSEEEE----CTTSCEEEEECCSS--SCEEEEEEECCBCCEEEE
T ss_pred HHHHHHHHHHHcCCCC--CcchHHHHHHHHHHHHhhCCEEEE----ecCCcEEEEEcCCC--CceEEEEecCcccceEeE
Confidence 4578999999999996 678899999999999999998775 67889999997753 389999999999952
Q ss_pred ----------CCCCCCCCCCC--------------ee-------------------------------------------
Q 018435 105 ----------EPSKWSHHPFG--------------AH------------------------------------------- 117 (356)
Q Consensus 105 ----------~~~~w~~~P~~--------------~~------------------------------------------- 117 (356)
.-.+|...++. +.
T Consensus 77 ~i~~G~l~~~~~Gg~~~~~~~g~~~~~~~~~g~~~G~i~~~~~h~~~~~~~~~~~~~~~l~id~g~~~eei~~G~~~~~~ 156 (346)
T 1vho_A 77 KVEGQFARLEPVGGVDPKVVYASKVRIYTKNGIERGVIGMLAPHLQDSESRKKVPTYDEIFVDLSLCERGVRVGDIAVID 156 (346)
T ss_dssp EEETTEEEEEEC--------CCCEEEEEETTEEEEEETTCCCSCCCCHHHHHTSCCTTCCEEEGGGSSSCCCTTCEEEEC
T ss_pred EecCCeEEEEEeCCccCcccccCEEEEEcCCCcEEEEEcCCCcccCchhhcccCCChhHeEEEeccchhcCCCCCEEEEc
Confidence 01245432211 11
Q ss_pred ----eCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEec
Q 018435 118 ----LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDE 193 (356)
Q Consensus 118 ----~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~ 193 (356)
+ .+++++|| ..|||.++++++.+++.+++.+ +++++.++|+.+||.|. .|+..... .. ..++++++|.
T Consensus 157 ~~~~~-~g~~i~g~-~~D~r~g~aa~l~al~~l~~~~--~~~~~~~~~t~~EEvG~-~Ga~~~~~--~i-~~~~~i~~D~ 228 (346)
T 1vho_A 157 QTAFE-TNGKVVGK-ALDNRASCGVLVKVLEFLKRYD--HPWDVYVVFSVQEETGC-LGALTGAY--EI-NPDAAIVMDV 228 (346)
T ss_dssp CCCEE-ETTEEEET-THHHHHHHHHHHHHHHHHTTCC--CSSEEEEEEECTTSSSH-HHHHHTTC--CC-CCSEEEEEEE
T ss_pred cchhh-hcCeEEec-cCccHHHHHHHHHHHHHhhhcC--CCceEEEEEECCcccch-hhHHHHhc--cc-CCCEEEEeec
Confidence 1 12779999 4699999999999999987654 46899999999999995 68876443 22 3467888886
Q ss_pred Cc
Q 018435 194 GL 195 (356)
Q Consensus 194 g~ 195 (356)
..
T Consensus 229 ~~ 230 (346)
T 1vho_A 229 TF 230 (346)
T ss_dssp EC
T ss_pred cc
Confidence 43
|
| >1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=142.18 Aligned_cols=145 Identities=20% Similarity=0.272 Sum_probs=113.2
Q ss_pred HHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCC--------
Q 018435 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP-------- 103 (356)
Q Consensus 32 ~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp-------- 103 (356)
++|++|+++||+ ++.|.++++++.++|+++|+++.. +..+|+++.++|++ .|+|++.||+|||+
T Consensus 7 ~~l~~Lv~~~s~--sg~e~~~~~~l~~~l~~~g~~v~~----d~~gnlia~~~g~~--~~~vll~aH~DtV~~~v~~i~~ 78 (348)
T 1ylo_A 7 SLLKALSEADAI--ASSEQEVRQILLEEAARLQKEVRF----DGLGSVLIRLNEST--GPKVMICAHMDEVGFMVRSISR 78 (348)
T ss_dssp HHHHHHHHSCCB--TTBCHHHHHHHHHHHHHTTCCEEE----CTTCCEEEECCCCS--SCEEEEEEECCCCEEEEEEECT
T ss_pred HHHHHHHcCCCC--CCchHHHHHHHHHHHHhhCCEEEE----ecCCCEEEEecCCC--CceEEEEEcCCccceEEEEECC
Confidence 789999999996 678889999999999999998764 67789999987752 47999999999995
Q ss_pred --------CCCCCCCCC------------------------------------------------------------CCC
Q 018435 104 --------SEPSKWSHH------------------------------------------------------------PFG 115 (356)
Q Consensus 104 --------~~~~~w~~~------------------------------------------------------------P~~ 115 (356)
.+ +|... +|+
T Consensus 79 ~G~~~~~~~G--g~~~~~~~g~~v~~~~~~G~~~~h~~~~~~~~~~~~~l~id~G~~s~~~~~~~gi~~g~~i~~~~~~~ 156 (348)
T 1ylo_A 79 EGAIDVLPVG--NVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARTYDEVMQAGIRPGDRVTFDTTFQ 156 (348)
T ss_dssp TCCEEEEEES--CCCGGGSSSEEEEEECTTCCEEEEEEEEEEETTEEEEEEEECSCCSHHHHHHTTCCTTCEEEECCCCE
T ss_pred CCeEEEEecC--CcchhhccCCEEEEEeCCCCCCcchhhhhccCCChhHEEEEecCCCHHHHHHcCCCCCCEEEEccccE
Confidence 22 22111 111
Q ss_pred eeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCc
Q 018435 116 AHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGL 195 (356)
Q Consensus 116 ~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~ 195 (356)
.. .+|+++|| ..|||.|+++++++++.+++.+ ++.++.++|+.+||.|+ .|+...... + ..++++++|...
T Consensus 157 -~~-~~~~~~~~-~~D~k~g~aa~l~al~~l~~~~--~~~~~~~~~t~~EEvG~-~Ga~~~~~~--i-~~~~~i~~D~~~ 227 (348)
T 1ylo_A 157 -VL-PHQRVMGK-AFDDRLSCYLLVTLLRELHDAE--LPAEVWLVASSSEEVGL-RGGQTATRA--V-SPDVAIVLDTAC 227 (348)
T ss_dssp -EE-TTTEEEET-THHHHHHHHHHHHHHHHHTTCC--CSSEEEEEEESCCTTSS-HHHHHHHHH--H-CCSEEEEECCCC
T ss_pred -Ee-cCCEEEec-CcccHHHHHHHHHHHHHhhhcC--CCceEEEEEEcccccch-hHHHHhhcc--c-CCCEEEEEeccc
Confidence 12 57899999 6799999999999999987654 56899999999999986 687655432 2 246788888643
|
| >4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=133.96 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=118.8
Q ss_pred CCCChhHHHHHHHhhhcccCC-CCCcChhHHHHHHHHHHHHCCCceEEEeec----C----CCceEEEEecCCCCCCCcE
Q 018435 23 PAKSDDSIIERFRAYLQIDTS-QPNPDYTNASKFILAQAEALSLESQTLEFA----K----NKPLILLKWPGSNPQLPSI 93 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~-s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~----~----~~~nv~~~~~g~~~~~~~i 93 (356)
.+.+.+++.+.+++++++... ..+.+..++++||.+.|+++|++++..... . ...||+++++|+. .+.|
T Consensus 20 p~f~~~~a~~~l~~l~~fgpR~~gS~~~~~a~~~i~~~l~~~g~~v~~q~~~~~~~~~~~~~~~Nii~~~~g~~--~~~i 97 (309)
T 4fuu_A 20 PQFDADSAYLYVKNQVDFGPRVPNTKEHVACGNYLAGKLEAFGAKVTNQYADLIAYDGTLLKARNIIGSYKPES--KKRI 97 (309)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEESTTC--SSEE
T ss_pred CccCHHHHHHHHHHHhCcCCcCCCCHHHHHHHHHHHHHHHHcCCeeEEEeEEeccCCCCcceeEEEEEEECCCC--CceE
Confidence 356789999999999998553 345677899999999999999988765432 1 1359999999875 3789
Q ss_pred EEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCc----
Q 018435 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG---- 169 (356)
Q Consensus 94 l~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~---- 169 (356)
++.||+|++|..+..... .+......|+.|+.+|+|++|++++.|.+. +++++|.|+|+.+||.|.
T Consensus 98 ~l~aH~Ds~~~~~~~~~~--------~~~~~~~~GA~D~aSG~a~lLE~ar~l~~~--~~~~~i~~~~~~~EE~Gl~~~~ 167 (309)
T 4fuu_A 98 ALFAHWDTRPWADNDADE--------KNHHTPILGANDGASGVGALLEIARLVNQQ--QPELGIDIIFLDAEDYGTPQFY 167 (309)
T ss_dssp EEEEECCCCSCCTTCSSG--------GGTTSCCCCTTTTHHHHHHHHHHHHHHHHS--CCSSEEEEEEECSSSCCCCTTC
T ss_pred EEEeecCCCCCCCCcccc--------ccccCCcCCcccCchhHHHHHHHHHHHhhc--CCCCceEEEeecccccCccccc
Confidence 999999999876421100 111122349999999999999999999886 468999999999999883
Q ss_pred ---------cccHHHHhccccc--cCCceEEEEec
Q 018435 170 ---------HDGAEKFADSHVF--NSLNVGIVLDE 193 (356)
Q Consensus 170 ---------~~G~~~~~~~~~~--~~~~~~~~~~~ 193 (356)
+.|+++++++... ..+...+.+|.
T Consensus 168 ~~~~~~~~~l~GS~~~~~~~~~~~~~i~~~inlDm 202 (309)
T 4fuu_A 168 EGKHKEEAWCLGSQYWSRNPHVQGYNARFGILLDM 202 (309)
T ss_dssp CSCCCGGGSCHHHHHHHHSCSSTTCCCSEEEEECS
T ss_pred cchhhhhhhhcchhHHHhcccccCcceEEEEeeec
Confidence 2588888876322 23455666653
|
| >3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=134.52 Aligned_cols=152 Identities=17% Similarity=0.187 Sum_probs=116.0
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCC-----
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP----- 103 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp----- 103 (356)
+++++|++|+++||+ ++.|.++++++.++|+++|++++. +..+|+++.++|++++.|+|+|.||||+|+
T Consensus 4 ~~~~~l~~L~~ips~--SG~E~~v~~~l~~~l~~~g~~~~~----D~~GNli~~~~g~~~~~~~v~l~aHmD~Vg~mV~~ 77 (355)
T 3kl9_A 4 TLFSKIKEVTELAAV--SGHEAPVRAYLREKLTPHVDEVVT----DGLGGIFGIKHSEAVDAPRVLVASHMDEVGFMVSE 77 (355)
T ss_dssp HHHHHHHHHHTSCCB--TTCCHHHHHHHHHHHGGGSSEEEE----CTTSCEEEEECCCSTTCCEEEEEEECCBCEEEEEE
T ss_pred HHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCEEEE----CCCCeEEEEECCcCCCCCeEEEEeccccccceEEE
Confidence 678999999999995 789999999999999999998876 788999999988652358999999999991
Q ss_pred -----------CCCCCCCCC--------------C-CCee----------------------------------------
Q 018435 104 -----------SEPSKWSHH--------------P-FGAH---------------------------------------- 117 (356)
Q Consensus 104 -----------~~~~~w~~~--------------P-~~~~---------------------------------------- 117 (356)
.+ +|... + +.++
T Consensus 78 I~~~G~l~~~~iG--G~~~~~~~~~~v~i~t~~g~~~~Gvig~~~~H~~~~~~~~~~~~~~~~~iD~g~~s~ee~~~~GI 155 (355)
T 3kl9_A 78 IKPDGTFRVVEIG--GWNPMVVSSQRFKLLTRDGHEIPVISGSVPPHLTRGKGGPTMPAIADIVFDGGFADKAEAESFGI 155 (355)
T ss_dssp ECTTSCEEEEEES--CCCTTTCSSCEEEEECTTSCEEEEEEC---------------CCGGGSCEECCCSSHHHHHHTTC
T ss_pred ECCCCEEEEEecC--CccccccCCCEEEEEcCCCCEEEEEEeCccccccChhhccCCCChhhEEEEeccCCHHHHHHcCC
Confidence 11 11100 0 0000
Q ss_pred -------------eCC-CCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccccc
Q 018435 118 -------------LDS-QGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN 183 (356)
Q Consensus 118 -------------~~~-~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~ 183 (356)
... ++++.|| +.||+.++++++++++.+++. .+..+++++|+..||.|+ +|+...... +
T Consensus 156 ~~Gd~v~~d~~~~~~~~~~~i~s~-~lDnr~g~~~~l~~l~~l~~~--~~~~~v~~~ft~qEEvG~-~Ga~~a~~~--~- 228 (355)
T 3kl9_A 156 RPGDTIVPDSSAILTANEKNIISK-AWDNRYGVLMVSELAEALSGQ--KLGNELYLGSNVQEEVGL-RGAHTSTTK--F- 228 (355)
T ss_dssp CTTCEEEECCCCEECTTSSEEEES-CHHHHHHHHHHHHHHHHHSSC--CCSSEEEEEEESCCTTTS-HHHHHHHHH--H-
T ss_pred CCCCEEEeccceEEecCCCEEEee-ccccHHHHHHHHHHHHHhhhc--CCCceEEEEEECccccCc-chhHHHHhc--c-
Confidence 112 3578888 779999999999999998754 467899999999999996 687654432 2
Q ss_pred CCceEEEEecCc
Q 018435 184 SLNVGIVLDEGL 195 (356)
Q Consensus 184 ~~~~~~~~~~g~ 195 (356)
..|+++++|.+.
T Consensus 229 ~pd~~i~~D~~~ 240 (355)
T 3kl9_A 229 DPEVFLAVDCSP 240 (355)
T ss_dssp CCSEEEEEEEEE
T ss_pred CCCEEEEecCcc
Confidence 246788888653
|
| >4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=133.07 Aligned_cols=137 Identities=13% Similarity=0.104 Sum_probs=106.1
Q ss_pred CChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecC--------CCceEEEEecCCCCCCCcEEEE
Q 018435 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK--------NKPLILLKWPGSNPQLPSILLN 96 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~--------~~~nv~~~~~g~~~~~~~il~~ 96 (356)
.....+-+.|..++ +|-...+.+..++++||.+.|+++|++++...... ...||+++++|+. .+.|++.
T Consensus 8 d~~~~~~~~l~~il-~PR~~gs~~~~~~~~~i~~~l~~~g~~v~~~~f~~~~~~~~~~~~~Nii~~~~~~~--~~~vvl~ 84 (312)
T 4f9u_A 8 DDEVHFNRTLDSIL-VPRVVGSRGHQQVREYLVQSLNGLGFQTEVDEFKQRVPVFGELTFANVVGTINPQA--QNFLALA 84 (312)
T ss_dssp CCHHHHHHHHHHHC-SCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEEESTTS--SEEEEEE
T ss_pred CHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEeEEEecCCCCceeEEEEEEEECCCC--CceEEEE
Confidence 34445556676664 57665567789999999999999999887655321 1259999999864 3689999
Q ss_pred eecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHc-----CCCCcccEEEEEeeccccC---
Q 018435 97 SHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS-----GFQPVRSVYLSFVPDEEIG--- 168 (356)
Q Consensus 97 aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~-----~~~~~~~i~~~~~~~EE~g--- 168 (356)
||+|+++.... .+ ..|+.|+.+|+|++|++++.|.+. +.+++++|+|+|+.+||.|
T Consensus 85 aHyDs~~~~~~----~~------------~~GA~DnaSGvA~lLElAR~l~~~~~~~~~~~p~~tI~fv~fdaEE~G~~~ 148 (312)
T 4f9u_A 85 CHYDSKYFPND----PG------------FVGATDSAVPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIFFDGEEAFKEW 148 (312)
T ss_dssp EECCCCCCTTC----TT------------CCCTTTTHHHHHHHHHHHHHTHHHHTTGGGSCSSEEEEEEEESCCSCSSSC
T ss_pred EEEecCCCCCC----CC------------CCCccCCcccHHHHHHHHHHHHHHHHhhccCCCCceEEEEEecCccccccC
Confidence 99999976421 11 239999999999999999999752 4568999999999999987
Q ss_pred ----ccccHHHHhccc
Q 018435 169 ----GHDGAEKFADSH 180 (356)
Q Consensus 169 ----~~~G~~~~~~~~ 180 (356)
++.|+++++++.
T Consensus 149 ~~~~~L~GS~~~a~~~ 164 (312)
T 4f9u_A 149 TDADSVYGSKHLAAKL 164 (312)
T ss_dssp SSSSSCHHHHHHHHHH
T ss_pred CccccccChHHHHHHH
Confidence 256999999863
|
| >3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-15 Score=141.14 Aligned_cols=150 Identities=15% Similarity=0.073 Sum_probs=108.1
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEe---ecCCCceEEEEecCCCCCCCcEEEEeecccC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLE---FAKNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~---~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv 102 (356)
..++++++|++|+++||. +++|.+++++|.++|+++|++++..+ ...+.+|+++.++| + |.|+|.||||||
T Consensus 15 ~~~~~~~~l~~Lv~i~s~--sg~e~~v~~~l~~~l~~~g~~v~~d~~~~~~~~~gnlia~~~g---~-~~ill~aH~DtV 88 (321)
T 3cpx_A 15 LYFQGMQLLKELCSIHAP--SGNEEPLKDFILEYIRSNAGSWSYQPVIYADNDLQDCIVLVFG---N-PRTAVFAHMDSI 88 (321)
T ss_dssp GGCCHHHHHHHHHHSCCB--TTCCHHHHHHHHHHHHHHGGGSSSCCEEECSGGGTTCEEEEES---S-CSEEEEEECCBC
T ss_pred HHHHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHHhhCCeEEEccccccccCCccEEEEecC---C-ceEEEEecCCcC
Confidence 346789999999999996 67899999999999999999765411 01126899999876 3 789999999999
Q ss_pred C-----------CCCCCCCC---CC---------CCe-----------------------------eeCCCCeEEecCcc
Q 018435 103 P-----------SEPSKWSH---HP---------FGA-----------------------------HLDSQGNIFARGSQ 130 (356)
Q Consensus 103 p-----------~~~~~w~~---~P---------~~~-----------------------------~~~~~g~~~GrG~~ 130 (356)
+ .++ |.. .+ +.+ ++ .+|+++|| ..
T Consensus 89 ~~~v~~i~~~~~~Gg--~~~~~~~~v~~~~~~g~~~gvi~~~ee~~~ida~~lv~~Gd~v~~~~~~~~-~~g~i~~~-~~ 164 (321)
T 3cpx_A 89 GFTVSYNNHLHPIGS--PSAKEGYRLVGKDSNGDIEGVLKIVDEEWMLETDRLIDRGTEVTFKPDFRE-EGDFILTP-YL 164 (321)
T ss_dssp EEEECSTTBEEEESS--CCCCTTCEEEEEETTEEEEEEEECGGGSCEEECSSCCCTTCEEEECCCCEE-ETTEEECT-TH
T ss_pred CeEecccCCeEEcCC--hhhcccCEEEEEeCCCceeeeECCccHHHHHHHHhcCCCCCEEEeccCcEE-EcCEEEEc-CC
Confidence 4 332 322 11 111 11 13788889 57
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhc--cccccCCceEEEEecCc
Q 018435 131 DMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD--SHVFNSLNVGIVLDEGL 195 (356)
Q Consensus 131 D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~--~~~~~~~~~~~~~~~g~ 195 (356)
|||+|+++++++++.++ + ++++|+.+||.|+ .|++.... ...+ ..++++++|.+.
T Consensus 165 D~k~G~aa~l~al~~l~-----~---i~~~~t~~EEvG~-~Ga~~a~~~~~~~~-~~~~~i~~D~~~ 221 (321)
T 3cpx_A 165 DDRLGVWTALELAKTLE-----H---GIIAFTCWEEHGG-GSVAYLARWIYETF-HVKQSLICDITW 221 (321)
T ss_dssp HHHHHHHHHHHHTTTCC-----S---EEEEEESSTTTTC-CSHHHHHHHHHHHH-CCCEEEECCCEE
T ss_pred cCHHHHHHHHHHHHHhc-----C---cEEEEECCccCch-hcchhhhhcccccc-CCCEEEEEeCcc
Confidence 99999999999988654 1 8899999999996 68774321 1112 346788887643
|
| >3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=133.37 Aligned_cols=150 Identities=16% Similarity=0.156 Sum_probs=111.1
Q ss_pred CChhHHHH-HHHhhhcccCCCCCcChhHHHHHHHHHHHHC--CCceEEEeecC-------CCceEEEEecCCCCCCCcEE
Q 018435 25 KSDDSIIE-RFRAYLQIDTSQPNPDYTNASKFILAQAEAL--SLESQTLEFAK-------NKPLILLKWPGSNPQLPSIL 94 (356)
Q Consensus 25 ~~~~~~~~-~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~--g~~~~~~~~~~-------~~~nv~~~~~g~~~~~~~il 94 (356)
.+.+++.+ .|+.+ -++-...+.++.++++||.++|+++ |++++...... ...||+++++|+. .+.|+
T Consensus 36 ~~~~~~~~~~L~~~-~~~R~~gS~~~~~a~~~l~~~l~~~~~g~~v~~d~f~~~~~~g~~~~~Nvia~~~g~~--~~~iv 112 (330)
T 3pb6_X 36 LDPQRLWSTYLRPL-LVVRTPGSPGNLQVRKFLEATLRSLTAGWHVELDPFTASTPLGPVDFGNVVATLDPRA--ARHLT 112 (330)
T ss_dssp CCHHHHHHHTTGGG-CSCCCTTSHHHHHHHHHHHHHHHHSTTCCEEEEEEEEEEETTEEEEEEEEEEESCTTS--SEEEE
T ss_pred CCHHHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEeeecccccCCccceEEEEEECCCC--CceEE
Confidence 45567766 57666 3344334677889999999999999 88777543321 2379999998874 37899
Q ss_pred EEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHc-----CCCCcccEEEEEeecccc--
Q 018435 95 LNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS-----GFQPVRSVYLSFVPDEEI-- 167 (356)
Q Consensus 95 ~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~-----~~~~~~~i~~~~~~~EE~-- 167 (356)
+.||+|+|+.... + -...|+.|+.+|+|++|++++.|.+. +..++++|.|+|+.+||.
T Consensus 113 l~aH~Dsv~~~~g--------------~-~~~~GA~D~asGva~lLe~ar~l~~~~~~~~~~~~~~~i~fv~~~~EE~f~ 177 (330)
T 3pb6_X 113 LACHYDSKLFPPG--------------S-TPFVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEALK 177 (330)
T ss_dssp EEEECCCCCCCTT--------------S-CCCCCTTTTHHHHHHHHHHHHHTHHHHHHHHHTTCSEEEEEEEESCCSCSS
T ss_pred EEeccCCCCCCCC--------------C-cCcCCCcCChHHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEEcCccccc
Confidence 9999999975210 0 12459999999999999999999873 346799999999999998
Q ss_pred ------CccccHHHHhccc----------cccCCceEEEEec
Q 018435 168 ------GGHDGAEKFADSH----------VFNSLNVGIVLDE 193 (356)
Q Consensus 168 ------g~~~G~~~~~~~~----------~~~~~~~~~~~~~ 193 (356)
| +.|+++++++. ...++...+.+|.
T Consensus 178 ~w~~~~g-l~GS~~~a~~~~~~~~~~~~~~~~~i~~~inlDm 218 (330)
T 3pb6_X 178 EWGPKDS-LYGSRHLAQLMESIPHSPGPTRIQAIELFMLLDL 218 (330)
T ss_dssp CCSTTSS-CHHHHHHHHHHHHSBCSSCSBTTTTEEEEEEEES
T ss_pred ccCCCCC-CccHHHHHHHHHhcCCccccchhhCeEEEEeccC
Confidence 6 57999988751 1234555666663
|
| >2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-17 Score=155.40 Aligned_cols=186 Identities=10% Similarity=0.077 Sum_probs=113.0
Q ss_pred HHHHHhhhcccCCCCCcChh-HHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCCCCC
Q 018435 31 IERFRAYLQIDTSQPNPDYT-NASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKW 109 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~-~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w 109 (356)
+++|++|++|||+ |+.|+ +++++|.++|+++|++++. |+.+||+++++|+ .|+|+|.|||||||.....
T Consensus 12 ~elL~~Lv~ipS~--sg~E~~~v~~~l~~~l~~~G~~v~~----D~~GNlia~~~g~---~p~lll~~H~Dtvp~~v~~- 81 (354)
T 2wzn_A 12 WKLMQEIIEAPGV--SGYEHLGIRDIVVDVLKEVADEVKV----DKLGNVIAHFKGS---SPRIMVAAHMDKIGVMVNH- 81 (354)
T ss_dssp HHHHHHHHHSCCB--TTCGGGTHHHHHHHHHHTTSSEEEE----CTTCCEEEEECCS---SSEEEEEEECCBCEEEEEE-
T ss_pred HHHHHHHhcCCCC--CcchHHHHHHHHHHHHHHcCCEEEE----eCCCeEEEEECCC---CceEEEEeccccCCCcCCe-
Confidence 5899999999996 56664 6899999999999998876 7888999999764 4799999999999875311
Q ss_pred CCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEE
Q 018435 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGI 189 (356)
Q Consensus 110 ~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~ 189 (356)
++++|.++++|..+.++.++.. .++..+...+ .+...+.+++..+||.+. .|.+.+.....+... +.
T Consensus 82 --------~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~ee~~~-~~~~~~~~~~~~~~~--g~ 148 (354)
T 2wzn_A 82 --------IDKDGYLHIVPIGGVLPETLVA-QRIRFFTEKG-ERYGVVGVLPPHLRRGQE-DKGSKIDWDQIVVDV--GA 148 (354)
T ss_dssp --------ECTTSCEEEEEESSCCGGGGTT-CEEEEEETTE-EEEEEECCCCGGGC----------CCGGGCCEEC--SC
T ss_pred --------eecCCceeeccCCCccHHHHHH-HHHHHhhccC-CccceEEEeeeeeEeccc-ccccchhhhhhhhhh--cc
Confidence 2278888888876666544322 2222222333 345667778888898775 466655443222111 11
Q ss_pred EEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHH
Q 018435 190 VLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIES 243 (356)
Q Consensus 190 ~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~ 243 (356)
... .+.....+..+..+.........+...|++.+..+ +++..+..++..
T Consensus 149 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (354)
T 2wzn_A 149 SSK----EEAEEMGFRVGTVGEFAPNFTRLNEHRFATPYLDDRICLYAMIEAARQ 199 (354)
T ss_dssp SSH----HHHHHTTCCTTCEEEECCCCEECSSSEEECTTHHHHHHHHHHHHHHHH
T ss_pred cch----hhhhccccccceeeeeeeeeEeecccccccccccccchhhhHHHHHHH
Confidence 110 11112244455566666677777877777654433 444444444433
|
| >4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9e-14 Score=129.80 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=111.1
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecC--------CCceEEEEecCCCCCCCcEEEEee
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK--------NKPLILLKWPGSNPQLPSILLNSH 98 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~--------~~~nv~~~~~g~~~~~~~il~~aH 98 (356)
...+.+.|..+. +|-...+.+..++++||.+.|+++|++++...... ...||+++++|+. ...|++.||
T Consensus 37 ~~~~~~~l~~il-~pR~~Gs~~~~~~~~~i~~~l~~~g~~v~~q~f~~~~~~~~~~~~~Nii~~~~~~~--~~~i~l~aH 113 (330)
T 4fai_A 37 KLHLREAIDKIL-IPRVVGTTNHSIVREYIVQSLRDLDWDVEVNSFHDHAPIKGKLHFHNIIATLNPNA--ERYLVLSCH 113 (330)
T ss_dssp HHHHHHHHHHHC-SCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEESCTTC--SEEEEEEEE
T ss_pred HHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEeeeeeecCCCCceeEEEEEEEECCCC--CcEEEEEEe
Confidence 455666666664 57665567889999999999999999987655431 1259999998764 368999999
Q ss_pred cccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHH---cCCCCcccEEEEEeeccccCc------
Q 018435 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKA---SGFQPVRSVYLSFVPDEEIGG------ 169 (356)
Q Consensus 99 ~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~---~~~~~~~~i~~~~~~~EE~g~------ 169 (356)
+|+++..+. + ..|+.|+.+|+|++|++++.|.+ .+..++++|.|+|+.+||.|-
T Consensus 114 yDs~~~~~~--------------~---~~GA~DnasG~A~lLE~Ar~l~~~~~~~~~p~rtI~fv~fdgEE~Gl~~~~~~ 176 (330)
T 4fai_A 114 YDSKYMPGV--------------E---FLGATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKD 176 (330)
T ss_dssp CCCCCCTTS--------------C---CCCTTTTHHHHHHHHHHHHHTHHHHGGGGTSSEEEEEEEESCCSCSSSCBTTB
T ss_pred ecccccccC--------------C---CCCCCCccHhHHHHHHHHHHHHHhhhccCCCCccEEEEEeccccccccccccc
Confidence 999976421 1 23999999999999999999875 345689999999999999873
Q ss_pred -cccHHHHhccc----cccCCceEEEEec
Q 018435 170 -HDGAEKFADSH----VFNSLNVGIVLDE 193 (356)
Q Consensus 170 -~~G~~~~~~~~----~~~~~~~~~~~~~ 193 (356)
+.|+++++++. ....+...+.+|.
T Consensus 177 ~llGS~~~a~~~~~~~~~~~i~~~inlDm 205 (330)
T 4fai_A 177 SIYGARHLAKKWHHEGKLDRIDMLVLLDL 205 (330)
T ss_dssp SCHHHHHHHHHHHHTTCSTTEEEEEEECS
T ss_pred hhhhhHHHHhcchhccchhceeEEEEecc
Confidence 35999998752 2334455566653
|
| >3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-12 Score=119.19 Aligned_cols=145 Identities=18% Similarity=0.160 Sum_probs=109.0
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC-----
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV----- 102 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv----- 102 (356)
-.+.++|++|+++|++ ++.|.++++++.++++++|.+++. |..+|+++.+ |. +.|+|+|.||||+|
T Consensus 11 ~~~~~~l~~L~~~psp--SG~E~~v~~~i~~~l~~~~~e~~~----D~~Gnvi~~~-g~--~~~~v~l~aHmDevG~mV~ 81 (343)
T 3isx_A 11 HHMKELIRKLTEAFGP--SGREEEVRSIILEELEGHIDGHRI----DGLGNLIVWK-GS--GEKKVILDAHIDEIGVVVT 81 (343)
T ss_dssp SCCHHHHHHHHHSCCB--TTCCHHHHHHHHHHHTTTCSEEEE----CTTCCEEEEE-CC--CSSEEEEEEECCBCEEEEE
T ss_pred HHHHHHHHHHHhCCCC--CCchHHHHHHHHHHHHHhCCEEEE----CCCCCEEEEE-CC--CCCEEEEEecccccceEEE
Confidence 4467899999999995 789999999999999999988876 8899999988 43 35899999999999
Q ss_pred -----------CCCCCCCCCC-----------CCCee-------------------------------------------
Q 018435 103 -----------PSEPSKWSHH-----------PFGAH------------------------------------------- 117 (356)
Q Consensus 103 -----------p~~~~~w~~~-----------P~~~~------------------------------------------- 117 (356)
|.+ +|... .+.++
T Consensus 82 ~I~~~G~l~~~~vG--G~~~~~~~~~~v~i~t~~~Gvig~~~~H~~~~~~~~~~~~~~~l~iD~g~~s~ee~~~~I~vGd 159 (343)
T 3isx_A 82 NVDDKGFLTIEPVG--GVSPYMLLGKRIRFENGTIGVVGMEGETTEERQENVRKLSFDKLFIDIGANSREEAQKMCPIGS 159 (343)
T ss_dssp EECTTSCEEEEEES--SCCHHHHTTCEEEETTSCEEEEEECCCSHHHHHHHHHTCCGGGEEEECSCSSHHHHHHHSCTTC
T ss_pred EECCCCeEEEEecC--CcCccccCCcEEEEeccEEEEEecccccccChhhcccCCCcceEEEEeCCCCHHHHHhcCCCCC
Confidence 111 12100 01111
Q ss_pred ---------eCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceE
Q 018435 118 ---------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVG 188 (356)
Q Consensus 118 ---------~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~ 188 (356)
. -++++.|+ +.||+.++++++++++.++. ..+++++|+..||.|+ +|+..... .+ ..|++
T Consensus 160 ~v~~~~~~~~-~~~~i~s~-~lDdR~g~~~~l~~l~~l~~-----~~~~~~~ft~qEEVG~-~Ga~~aa~--~i-~pd~~ 228 (343)
T 3isx_A 160 FGVYDSGFVE-VSGKYVSK-AMDDRIGCAVIVEVFKRIKP-----AVTLYGVFSVQEEVGL-VGASVAGY--GV-PADEA 228 (343)
T ss_dssp EEEESCCCEE-ETTEEEES-CHHHHHHHHHHHHHHHHCCC-----SSEEEEEEECCCCTTS-CCSTTTGG--GC-CCSEE
T ss_pred EEEecCceEE-eccEEEec-cCccHHHHHHHHHHHHhccC-----CCeEEEEEECCcccCc-hhHHHHhh--cC-CCCEE
Confidence 1 23677787 67999999999999887642 5789999999999996 67764333 22 24678
Q ss_pred EEEecC
Q 018435 189 IVLDEG 194 (356)
Q Consensus 189 ~~~~~g 194 (356)
+++|.+
T Consensus 229 i~vDv~ 234 (343)
T 3isx_A 229 IAIDVT 234 (343)
T ss_dssp EEEEEE
T ss_pred EEEeCc
Confidence 888864
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=118.70 Aligned_cols=96 Identities=20% Similarity=0.092 Sum_probs=77.9
Q ss_pred CceEEEEecCCCC---CCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCC
Q 018435 76 KPLILLKWPGSNP---QLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQ 152 (356)
Q Consensus 76 ~~nv~~~~~g~~~---~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~ 152 (356)
..||+++++|+++ ..+.|++.||+|+|+.+ +|+.|+++|++++|++++.|++. .
T Consensus 203 ~~Nvi~~~~g~~~~~~~~~~v~~~aH~D~v~~g---------------------~Ga~D~~~G~a~~le~~~~l~~~--~ 259 (421)
T 2ek8_A 203 SHNVIATKKPDANKKNTNDIIIIGSHHDSVEKA---------------------PGANDDASGVAVTLELARVMSKL--K 259 (421)
T ss_dssp EEEEEEEECCCSSTTCCCCEEEEEEECCCCTTC---------------------CCTTTTHHHHHHHHHHHHHHTTS--C
T ss_pred ccceEEEecCcccCCCCCCEEEEecccccCCCC---------------------CCCCCCcHhHHHHHHHHHHHhcc--C
Confidence 5799999998643 45899999999999864 38999999999999999999874 4
Q ss_pred CcccEEEEEeeccccCccccHHHHhcccc---ccCCceEEEEecCc
Q 018435 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHV---FNSLNVGIVLDEGL 195 (356)
Q Consensus 153 ~~~~i~~~~~~~EE~g~~~G~~~~~~~~~---~~~~~~~~~~~~g~ 195 (356)
++++|+|+++.+||.|. .|+++++++.. ..+....+.+|..+
T Consensus 260 ~~~~i~~~~~~~EE~g~-~Gs~~~~~~~~~~~~~~~~~~in~D~~g 304 (421)
T 2ek8_A 260 TDTELRFITFGAEENGL-IGSKKYAASLSEDEIKRTIGMFQLDMVG 304 (421)
T ss_dssp CSSEEEEEEESSSTTTS-HHHHHHHTTCCHHHHHHEEEEEEECSCC
T ss_pred CCceEEEEEECCccccc-hhHHHHHHhCccchhhcEEEEEEecccC
Confidence 68999999999999985 79999998632 22344567777543
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=119.42 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHCC-CceEE-Eee----cCCCceEEEEecCCCCCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCe
Q 018435 50 TNASKFILAQAEALS-LESQT-LEF----AKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGN 123 (356)
Q Consensus 50 ~~~~~~l~~~l~~~g-~~~~~-~~~----~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~ 123 (356)
.+.++.|.+.++.-. +.++. ++. .....||+++++|+++..+.|++.+|+|+++.+
T Consensus 203 ~~da~~L~~~l~~g~~~~v~l~~~~~~~~~~~~~Nvi~~~~g~~~~~~~i~~~aH~Ds~~~g------------------ 264 (444)
T 3iib_A 203 NPDADLINAMLKRDKEVVISLELGSERRGETTSYNVIAEVKGSTKADEIVLIGAHLDSWDEG------------------ 264 (444)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEEEEEEEEEEEEEEEEEEECCSTEEEEEEEEEEECCCCSSS------------------
T ss_pred HHHHHHHHHHHhCCCCeEEEEEEeeeEcCCceeEEEEEEEeCCCCCCCEEEEEeecccCCCC------------------
Confidence 355666666665421 32221 011 124579999999986434789999999999864
Q ss_pred EEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccc
Q 018435 124 IFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (356)
Q Consensus 124 ~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (356)
+|+.|+++|++++|++++.|++.+..++++|+|+|+.+||.|. .|+++++++.
T Consensus 265 ---~Ga~D~~sG~a~~le~a~~l~~~~~~~~~~i~f~~~~~EE~gl-~Gs~~~~~~~ 317 (444)
T 3iib_A 265 ---TGAIDDGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEELGL-LGGKTYAKEH 317 (444)
T ss_dssp ---CCTTTTHHHHHHHHHHHHHHHTSSSCCSEEEEEEEESCGGGTS-HHHHHHHHHT
T ss_pred ---CCCccchHHHHHHHHHHHHHHhcCCCCCCeEEEEEECCcccCC-cCHHHHHHhh
Confidence 3899999999999999999999887889999999999999985 6999999864
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.2e-09 Score=106.64 Aligned_cols=95 Identities=18% Similarity=0.174 Sum_probs=75.5
Q ss_pred CCceEEEEecCCCCCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHc----C
Q 018435 75 NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS----G 150 (356)
Q Consensus 75 ~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~----~ 150 (356)
...||+++++|+....+.|++.+|+|++.. |+.|+.+|++++|++++.|.+. +
T Consensus 265 ~~~NVi~~i~G~~~~~~~vvvgaH~Ds~~~-----------------------Ga~D~~sG~a~lLe~ar~l~~~~~~~g 321 (640)
T 3kas_A 265 KILNIFGVIKGFVEPDHYVVVGAQRDAWGP-----------------------GAAKSGVGTALLLKLAQMFSDMVLKDG 321 (640)
T ss_dssp EEEEEEEEECCSSEEEEEEEEEEECCCSSC-----------------------CTTTTHHHHHHHHHHHHHHHHHHHTSC
T ss_pred eEEEEEEEEeCCcCCCCceeeecccCCCCC-----------------------CCCcCcHHHHHHHHHHHHHHHhhhhcC
Confidence 457999999998422478999999999832 7889999999999999999864 6
Q ss_pred CCCcccEEEEEeeccccCccccHHHHhccc--cc-cCCceEEEEec
Q 018435 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VF-NSLNVGIVLDE 193 (356)
Q Consensus 151 ~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~~-~~~~~~~~~~~ 193 (356)
.+|+++|+|+++.+||.|. .|+.+++++. .+ .++...+.+|.
T Consensus 322 ~~p~r~I~f~~~~~EE~gl-~GS~~~~~~~~~~l~~~~~a~iNlD~ 366 (640)
T 3kas_A 322 FQPSRSIIFASWSAGDFGS-VGATEWLEGYLSSLHLKAFTYINLDK 366 (640)
T ss_dssp CCCSEEEEEEEESSGGGTS-HHHHHHHHHTTTTGGGTEEEEEECTT
T ss_pred CCCCCcEEEEEECCcccCc-hhHHHHHHhhhhhhhhCEEEEEeccc
Confidence 7899999999999999984 7999999864 22 23334455554
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-09 Score=108.96 Aligned_cols=81 Identities=21% Similarity=0.223 Sum_probs=70.2
Q ss_pred CCceEEEEecCCCCCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHH---cCC
Q 018435 75 NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKA---SGF 151 (356)
Q Consensus 75 ~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~---~~~ 151 (356)
...||+++++|+....+.|++.+|+|+++. |+.|+.+|++++|++++.|.+ .+.
T Consensus 311 ~~~NVi~~i~G~~~~~~~vllgaH~Ds~~~-----------------------Ga~D~~sG~a~lLe~ar~l~~~~~~g~ 367 (707)
T 3fed_A 311 RIYNVVGTIRGSVEPDRYVILGGHRDSWVF-----------------------GAIDPTSGVAVLQEIARSFGKLMSKGW 367 (707)
T ss_dssp EEEEEEEEECCSSEEEEEEEEEEECCCSSS-----------------------CTTTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEEEEeCCCCCCceEEEeccccCCCC-----------------------CCccCcHHHHHHHHHHHHHHhhhhccC
Confidence 356999999998633478999999999863 578999999999999999876 567
Q ss_pred CCcccEEEEEeeccccCccccHHHHhcc
Q 018435 152 QPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 152 ~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
+++++|+|+++.+||.|. .|+.+++++
T Consensus 368 ~p~r~I~f~~~~~EE~Gl-~GS~~~~~~ 394 (707)
T 3fed_A 368 RPRRTIIFASWDAEEFGL-LGSTEWAEE 394 (707)
T ss_dssp CCSEEEEEEEESCGGGTS-HHHHHHHHH
T ss_pred CCCCCEEEEEeCCccccc-hhHHHHHHh
Confidence 899999999999999984 799999986
|
| >3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0026 Score=59.82 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=60.3
Q ss_pred EEEEe--cCCCCCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCccc
Q 018435 79 ILLKW--PGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRS 156 (356)
Q Consensus 79 v~~~~--~g~~~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~ 156 (356)
.++.+ +|+. .+.|++.+|+|+.. ++.||.+|+|++++.++.|++. +++.+
T Consensus 168 ~y~e~~ipG~t--~~~IllsaH~cHP~------------------------~ANDNaSG~a~lleLar~l~~~--~~~~t 219 (435)
T 3k9t_A 168 TYGEYYIRGEL--EEEILLTTYTCHPS------------------------MCNDNLSGVALITFIAKALSKL--KTKYS 219 (435)
T ss_dssp EEEEEEECCSS--SCEEEEEEECCCCS------------------------CTTTTHHHHHHHHHHHHHHTTS--CCSSE
T ss_pred EEEEEEecCCC--CCEEEEEEEcCCCC------------------------CCCccchHHHHHHHHHHHHhcC--CCCce
Confidence 34444 8864 38999999999721 4789999999999999999864 46899
Q ss_pred EEEEEeeccccCccccHHHHhccc--cccCCceEEEEec
Q 018435 157 VYLSFVPDEEIGGHDGAEKFADSH--VFNSLNVGIVLDE 193 (356)
Q Consensus 157 i~~~~~~~EE~g~~~G~~~~~~~~--~~~~~~~~~~~~~ 193 (356)
++|+|.+ | ..|+.+++.+. ..+.+..++++|.
T Consensus 220 ~rFvf~p----g-~iGS~~yl~~~~~~l~~i~a~lnLDm 253 (435)
T 3k9t_A 220 YRFLFAP----E-TIGSITWLSRNEDKLKNIKMGLVATC 253 (435)
T ss_dssp EEEEEEC----T-THHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred EEEEEcC----c-cHHHHHHHHhChHhhhceEEEEEEEE
Confidence 9999998 2 24788887653 2334445666653
|
| >2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=90.60 E-value=0.14 Score=49.24 Aligned_cols=47 Identities=23% Similarity=0.356 Sum_probs=36.7
Q ss_pred CCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccH
Q 018435 121 QGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (356)
Q Consensus 121 ~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (356)
++.+.++ ..||+.++.++|.|++.++ .+..+++++++..||.|+ +|+
T Consensus 252 ~~~I~s~-~lDdr~~~~~~l~al~~~~----~~~~~~~~~~~d~EEVGs-~ga 298 (461)
T 2glj_A 252 RSMVMGY-GQDDRICAYTSFEAMLEMK----NAKKTCITILVDKEEVGS-IGA 298 (461)
T ss_dssp CCEEEET-THHHHHHHHHHHHHHHTCC----SCSSCEEEEEECCGGGTC-CTT
T ss_pred CCEEEEe-cchhHHHHHHHHHHHHhhc----cCCCeEEEEEEccCCCCC-ccc
Confidence 3466666 5699999999999987653 356799999999999986 454
|
| >1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=90.04 E-value=0.066 Score=51.46 Aligned_cols=49 Identities=33% Similarity=0.354 Sum_probs=34.8
Q ss_pred CCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHH
Q 018435 121 QGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (356)
Q Consensus 121 ~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (356)
++.+.++ ..||+.+++++|.+++.+++ .+..+++++|+..||.|+ +|+.
T Consensus 246 ~~~I~s~-~lDdr~~~~~~l~al~~~~~---~~~~~~~~~~~d~EEVGs-~ga~ 294 (458)
T 1y7e_A 246 KALIGAY-GQDDKICVFTSLESIFDLEE---TPNKTAICFLVDKEEIGS-TGST 294 (458)
T ss_dssp TCEEEES-SHHHHHHHHHHHHHHSSSSC---CCSSCEECCCBCSTTC-------
T ss_pred CCeEEEe-cCccHHHHHHHHHHHHhhhc---cCCceEEEEEEcccccCc-ccch
Confidence 4567776 56999999999999876542 356899999999999996 4554
|
| >2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=88.59 E-value=0.35 Score=46.32 Aligned_cols=75 Identities=13% Similarity=-0.003 Sum_probs=50.4
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceE----EEee-----cCC-CceEEEEecCCCCCCCcEEE
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQ----TLEF-----AKN-KPLILLKWPGSNPQLPSILL 95 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~----~~~~-----~~~-~~nv~~~~~g~~~~~~~il~ 95 (356)
..+++.+..++|+++=.. ++.+..+.+++.++|++.||.-- .+.. .+. ..|+++...|+.++.+.+++
T Consensus 12 ~~~~~~~~~~~~~~Fl~~--s~t~~h~v~~~~~~l~~~Gf~~l~e~~~l~~g~k~~~~r~~~~lia~~~g~~~~~g~~ii 89 (450)
T 2glf_A 12 KKEEIEAFSKEYMEFMSK--AKTERMTVKEIKRILDESGFVPLEDFAGDPMNMTVYAVNRGKAIAAFRVVDDLKRGLNLV 89 (450)
T ss_dssp CHHHHHHHHHHHHHHHHH--CSSHHHHHHHHHHHHHTTTCEETTSCCSCTTSBCEEEESSSSCEEEEEBCSCGGGCCEEE
T ss_pred HHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCcCEEcccccCCCCCCEEEEEcCCCEEEEEEeCCCCCCCeEEE
Confidence 334555556666666554 34678899999999999998421 0000 012 36899987776323478999
Q ss_pred EeecccC
Q 018435 96 NSHTDVV 102 (356)
Q Consensus 96 ~aH~Dtv 102 (356)
.||+|.+
T Consensus 90 ~AH~Dsp 96 (450)
T 2glf_A 90 VAHIDSP 96 (450)
T ss_dssp EEECCCC
T ss_pred EEecccC
Confidence 9999999
|
| >3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A* | Back alignment and structure |
|---|
Probab=87.78 E-value=6.3 Score=37.87 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=73.1
Q ss_pred HHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHC-CCceEEEeec----CCCc--------------eEEEEecCCCCCC
Q 018435 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL-SLESQTLEFA----KNKP--------------LILLKWPGSNPQL 90 (356)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~-g~~~~~~~~~----~~~~--------------nv~~~~~g~~~~~ 90 (356)
-+.+.|+|++.|.. --.-...+++..+.++++ |++++.++.. -+.+ -++.+|.|.++..
T Consensus 182 ~~~~aRdL~n~P~n--~~~P~~~a~~a~~l~~~~~g~~v~v~~~~~l~~~gmg~~laVg~gS~~pPrli~l~y~g~~~~~ 259 (497)
T 3h8g_F 182 GMAFTRDLGNLPPN--LCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKAD 259 (497)
T ss_dssp HHHHHHHHHHSCTT--TSCHHHHHHHHHHHHHHCTTEEEEEECHHHHHHTTCHHHHHHHTTSSSCCEEEEEEEECSCTTS
T ss_pred HHHHHHHhhcCCcc--ccCHHHHHHHHHHHHhhcCCceEEEEeHHHHHhCCCCcEEEEccCCCCCCEEEEEEECCCCCCC
Confidence 45677888888873 234578888999999999 9998876632 1222 3344554433333
Q ss_pred CcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 91 ~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
++|.|.|-==|...++ -+-.|-..-. +.--|++|.|+.+.+++.+.+.+. +.+|+.+....|-.
T Consensus 260 ~~i~LVGKGiTFDsGG--~slKp~~~M~---------~Mk~DM~GAAaV~g~~~a~a~l~l--~vnv~~~i~~~ENm 323 (497)
T 3h8g_F 260 KPFVLVGKGITFDTGG--ISLKPGAGMD---------EMKYDMCGAASVFGTLRAVLELQL--PVNLVCLLACAENM 323 (497)
T ss_dssp CCEEEEEEEEEEECCT--TSCCCSTTGG---------GGGGTTHHHHHHHHHHHHHHHHTC--SSEEEEEEEEEEEC
T ss_pred CcEEEEcCceEeccCC--ccCCCccchh---------hccccchHHHHHHHHHHHHHHcCC--CeEEEEEEEeeccC
Confidence 4555554322221111 0111111000 111235888999999999998864 67899988888853
|
| >2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.57 E-value=0.15 Score=48.64 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=41.6
Q ss_pred HhhhcccCCCCCcChhHHHHHHHHHHHHCCCc----eEE--Eee-----cCCC-ceEEEEecCCC--CCCCcEEEEeecc
Q 018435 35 RAYLQIDTSQPNPDYTNASKFILAQAEALSLE----SQT--LEF-----AKNK-PLILLKWPGSN--PQLPSILLNSHTD 100 (356)
Q Consensus 35 ~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~----~~~--~~~-----~~~~-~nv~~~~~g~~--~~~~~il~~aH~D 100 (356)
++|+++=.. ++.+..+.+++.++|++.||. .+. +.. .+.. +|+++...|++ ++.+.+++.||+|
T Consensus 6 ~~~~~fl~~--~~t~~h~v~~~~~~l~~~Gf~~l~e~~~w~l~~g~k~~~~~~~g~lia~~~G~~~~~~~~~~ii~AH~D 83 (428)
T 2ijz_A 6 QGLIDFLKA--SPTPFHATASLARRLEAAGYRRLDERDAWHTETGGRYYVTRNDSSLIAIRLGRRSPLESGFRLVGAHTD 83 (428)
T ss_dssp --CCCSSTT--THHHHHHHCCSHHHHHHHHHHHSCC--------CCCCEECTTTTCCEEEECC--CCSTTCCEEEECBCC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHcCCeEcccccccccCCCCEEEEECCCCEEEEEEECCcCCCCCCcEEEEEcCC
Confidence 345555554 456788888889999998871 111 110 1344 78999887764 2347899999999
Q ss_pred cC
Q 018435 101 VV 102 (356)
Q Consensus 101 tv 102 (356)
++
T Consensus 84 sp 85 (428)
T 2ijz_A 84 SP 85 (428)
T ss_dssp CS
T ss_pred cC
Confidence 99
|
| >3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=87.28 E-value=3.8 Score=39.46 Aligned_cols=123 Identities=10% Similarity=0.066 Sum_probs=71.4
Q ss_pred HHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeec----CCCce--------------EEEEecCCCCCCC
Q 018435 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA----KNKPL--------------ILLKWPGSNPQLP 91 (356)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~----~~~~n--------------v~~~~~g~~~~~~ 91 (356)
-+.+.|+|++.|.. --.-...+++..+.+++.|++++.++.. -+.+. ++.+|.|.++..+
T Consensus 199 ~~~~aRdL~n~P~n--~ltP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~gS~~pPrli~l~y~g~~~~~~ 276 (515)
T 3kzw_A 199 SINLARDFSNMPPN--VLTPQTFAEDIVNHFKNTKVKVDVKDYDTLVSEGFGLLQAVGKGSKHKPRLVTITYNGKDKDEA 276 (515)
T ss_dssp HHHHHHHHHHSCTT--TSCHHHHHHHHHHHSTTSSCEEEEECHHHHHHTTCHHHHHHHTTSSSCCEEEEEEEESSCSSCC
T ss_pred HHHHHHHHhcCCcc--ccCHHHHHHHHHHHHHhcCcEEEEEcHHHHHHcCCCcEEEEccCCCCCCEEEEEEECCCCCCCC
Confidence 44588889998884 2345678888889999999999876632 12222 3334444333234
Q ss_pred cEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 92 SILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 92 ~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
+|+|.|-==|...++ ..-.|-..- .+.--|++|.|+.+.+++++.+.+. +.+|+.+....|-.
T Consensus 277 ~i~LVGKGiTFDsGG--~slKp~~~M---------~~MK~DM~GAAaVlg~~~a~a~l~l--pvnv~~~i~~~ENm 339 (515)
T 3kzw_A 277 PIALVGKGITYDSGG--YSIKTKNGM---------ATMKFDMCGAANVVGIIEAASRLQL--PVNIVGVLACAENM 339 (515)
T ss_dssp CEEEEEEEEEEECCT--TSCCCHHHH---------TTGGGGGHHHHHHHHHHHHHHHTTC--SCEEEEEEEEEEEC
T ss_pred cEEEecCceEEecCC--cCCCCccCh---------hhchhchHHHHHHHHHHHHHHHcCC--CceEEEEEEeeccC
Confidence 444444321111111 001110000 0111235888999999999998864 67898888888753
|
| >1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=86.88 E-value=0.28 Score=47.14 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=46.7
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCc-----------eEEEeecCCCceEEEEec-CCCC--CCCcE
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLE-----------SQTLEFAKNKPLILLKWP-GSNP--QLPSI 93 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~-----------~~~~~~~~~~~nv~~~~~-g~~~--~~~~i 93 (356)
+++.+..++|+++=+.| +.+..+.+++.++|++.||. -+. ..+..+|+++.+. |+++ ++. -
T Consensus 16 ~~~~~~~~~~~~fl~~s--pT~~hav~~~~~~l~~~Gf~~l~e~~~l~~g~~~--~~~r~g~~i~a~~~G~~~~~~g~-~ 90 (458)
T 1y7e_A 16 NQILNFSESYKKFISKF--KTEREVTAYALDKAKKLGFINAEEKKNLMPGDKI--FYTCREKSVAFAIIGKNPIEDGM-N 90 (458)
T ss_dssp HHHHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHTTTCEESTTCCCCCTTCEE--ECBCSSSCBCCEECCSSCGGGCC-E
T ss_pred HHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHcCCcccccccccCCCCeE--EEECCCCEEEEEEeCCCCCCCCc-E
Confidence 44555566677666653 35669999999999999975 111 1145566666654 6542 223 4
Q ss_pred EEEeecccC
Q 018435 94 LLNSHTDVV 102 (356)
Q Consensus 94 l~~aH~Dtv 102 (356)
++.||+|+.
T Consensus 91 ii~AH~Dsp 99 (458)
T 1y7e_A 91 FIVSHTDSP 99 (458)
T ss_dssp ECCCBCCCC
T ss_pred EEEEccCcC
Confidence 999999998
|
| >2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.80 E-value=0.97 Score=43.20 Aligned_cols=45 Identities=33% Similarity=0.400 Sum_probs=34.1
Q ss_pred CeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccH
Q 018435 122 GNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (356)
Q Consensus 122 g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (356)
+.+.|+ ..||+.++.++|.|++.+ .+...++++++..||.|+ +|+
T Consensus 241 ~~i~~~-~lDnr~~~~~~l~al~~~-----~~~~~~~~~~~d~EEVGs-~ga 285 (450)
T 2glf_A 241 SLIGAY-GQDDRICAYTALRALLSA-----NPEKSIGVIFFDKEEIGS-DGN 285 (450)
T ss_dssp CEEEET-THHHHHHHHHHHHHHHHC-----CCSSCEEEEEESCGGGTS-CSS
T ss_pred cEEEEe-cchhhHHHHHHHHHHHhc-----CCCceEEEEEEcccccCC-cch
Confidence 345555 569999999999988765 246789999999999986 443
|
| >3pei_A Cytosol aminopeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE; 2.70A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=86.58 E-value=6.2 Score=37.79 Aligned_cols=123 Identities=7% Similarity=-0.069 Sum_probs=71.5
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHC-CCceEEEeec----CCCc--------------eEEEEecCCCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL-SLESQTLEFA----KNKP--------------LILLKWPGSNPQ 89 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~-g~~~~~~~~~----~~~~--------------nv~~~~~g~~~~ 89 (356)
+-+.+.|+|++.|.. --.-...+++..+.++++ |++++.++.. -+.+ -++.+|.|.++.
T Consensus 165 ~~~~~aRdL~n~P~n--~~~P~~~a~~a~~l~~~~~g~~v~V~~~~~l~~~gmg~~laVg~gS~~pPrli~l~y~g~~~~ 242 (486)
T 3pei_A 165 CGQNYAKDLQNLPAN--ICTTDYMLNEARELTSKYATFSLDYLDQDAMAELGMGCALAVGRGSYMSNYTVCMEYKGGNEG 242 (486)
T ss_dssp HHHHHHHHHHHSCTT--TSCHHHHHHHHHHHHHTCTTEEEEEECHHHHHHTTCHHHHHHHTTCSSCCEEEEEEEECSCTT
T ss_pred HHHHHHHHHhcCChh--hcCHHHHHHHHHHHHhhcCCceEEEEeHHHHHhCCCCcEEEeccCCCCCCEEEEEEECCCCCC
Confidence 346688889988874 234577888899999998 8998876532 1222 234445443333
Q ss_pred CCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccc
Q 018435 90 LPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166 (356)
Q Consensus 90 ~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 166 (356)
.++|.|.|-==|...++ -+-.|-.. |. +---|++|.|+.+.+++.+.+.+. +.+|+.+....|-
T Consensus 243 ~~~i~LVGKGiTFDsGG--~slKp~~~-------M~--~Mk~DM~GAAaVlg~~~a~a~l~l--~vnv~~~i~~~EN 306 (486)
T 3pei_A 243 DAPIVLVGKGLVFDNGG--ICIKQAAG-------MD--SMKMDMGGVAAVMGTMKAIAMLNL--PVNVVGVMGLAEN 306 (486)
T ss_dssp SCCEEEEEEEEETEECC-----------------------EECSHHHHHHHHHHHHHHHHTC--SSEEEEEEEEEEC
T ss_pred CCcEEEEccceEEecCC--cccCCccc-------hh--hhhccchHHHHHHHHHHHHHHcCC--CcEEEEEEEeecc
Confidence 34555554322221111 01111100 00 111236888999999999998864 5789888888875
|
| >4efd_A Aminopeptidase; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei brucei} | Back alignment and structure |
|---|
Probab=86.26 E-value=5.2 Score=38.48 Aligned_cols=124 Identities=6% Similarity=-0.063 Sum_probs=72.1
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecC----CCce--------------EEEEecCCCCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK----NKPL--------------ILLKWPGSNPQL 90 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~----~~~n--------------v~~~~~g~~~~~ 90 (356)
+-+.+.|+|++.|.. --.-...+++..+.++++|++++.++... +.+. +..+|.|.+...
T Consensus 205 ~~~~laRdLvn~P~N--~~tP~~lA~~a~~l~~~~gv~v~Vl~~~~l~~~gmg~~laVg~GS~~pPrli~L~Y~g~~~~~ 282 (522)
T 4efd_A 205 TSTQLCQRLVDAPPN--LLTTATFTEIAQGYAKALGFDVDVICGDDLCERGYGGIYSVGKAAFEAPRLVTLLYTPKGTPV 282 (522)
T ss_dssp HHHHHHHHHHHSCTT--TSCHHHHHHHHHHHHHHHTCEEEEEETHHHHHHTCHHHHHHHTTSSSCCEEEEEEECCSSCCS
T ss_pred HHHHHHHHHhcCCch--hCCHHHHHHHHHHHHHHcCCEEEEEeHHHHHHcCCCcEEeeccCCCCCCEEEEEEECCCCCCC
Confidence 567788999998884 23557888889999999999998766421 2333 333343332222
Q ss_pred CcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 91 ~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
++|.|.|-==|...++ ..-.|-.. |. +.--|++|.|+.+.+++.+.+.+. +.+|..++...|-.
T Consensus 283 ~~iaLVGKGITFDSGG--lsLKp~~~-------M~--~MK~DMgGAAaVlga~~a~a~l~l--pvnV~~vl~~~ENm 346 (522)
T 4efd_A 283 KKVSLVGKGIVYDCGG--LALKPADY-------MK--LMKHDMGGAAAVFCGFLTAVRLQQ--PVQLSCTLCLAENA 346 (522)
T ss_dssp EEEEEEEEEEETCCCC--SSSCHHHH-------HH--HGGGTTHHHHHHHHHHHHHHHHTC--SEEEEEEEEEEECC
T ss_pred CcEEEecCceEeecCC--ccCCCccc-------hh--hcccccchHHHHHHHHHHHHHcCC--CceEEEEEEEeccC
Confidence 3444443321111111 00000000 00 011235788889999999988764 67888888888753
|
| >1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1 | Back alignment and structure |
|---|
Probab=85.68 E-value=10 Score=36.63 Aligned_cols=119 Identities=12% Similarity=0.089 Sum_probs=71.8
Q ss_pred HHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCC--CceEEEeec----CCCc--------------eEEEEecCCCC-C
Q 018435 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALS--LESQTLEFA----KNKP--------------LILLKWPGSNP-Q 89 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g--~~~~~~~~~----~~~~--------------nv~~~~~g~~~-~ 89 (356)
+.+.|+|++.|.. --.-...+++..+.++++| ++++.++.. -+.+ -++.+|.|.++ .
T Consensus 184 ~~laRdL~n~P~N--~~tP~~lA~~a~~la~~~g~~~~v~Vl~~~~l~~~gmg~~laVg~GS~~pPrli~l~Y~g~~~~~ 261 (503)
T 1gyt_A 184 IKAAKDLGNMPPN--ICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASED 261 (503)
T ss_dssp HHHHHHHHHSCTT--TCSHHHHHHHHHHHHHHTTTTEEEEEECHHHHHHTTCHHHHHHHHTSSSCCEEEEEEEECCCCTT
T ss_pred HHHHHHHhcCChh--hcCHHHHHHHHHHHHHhcCCceEEEEEcHHHHHHCCCCceeeecccCCCCCeEEEEEECCCCCCC
Confidence 3567888888874 2344778888999999999 998876532 1222 33445544332 2
Q ss_pred CCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCccc---chHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccc
Q 018435 90 LPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQD---MKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166 (356)
Q Consensus 90 ~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D---~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 166 (356)
.++|+|.|===|...++ -+-.|-. |..+ |++|.|+.+.+++.+.+.+. +.+|+.+....|-
T Consensus 262 ~~~i~LVGKGITFDsGG--islKp~~------------~M~~MK~DM~GAAaVlg~~~aia~l~l--~vnV~~~i~~~EN 325 (503)
T 1gyt_A 262 ARPIVLVGKGLTFDSGG--ISIKPSE------------GMDEMKYDMCGAAAVYGVMRMVAELQL--PINVIGVLAGCEN 325 (503)
T ss_dssp CCCEEEEEEEEEEECCT--TSCCCST------------TGGGGGGGGHHHHHHHHHHHHHHHHTC--SSEEEEEEEEEEE
T ss_pred CCcEEEEcCceEecCCC--ccccCCc------------ChhhcccccchHHHHHHHHHHHHHcCC--CeeEEEEEEeecc
Confidence 34455554321221111 1111111 2222 35888999999999998864 6789999888885
Q ss_pred c
Q 018435 167 I 167 (356)
Q Consensus 167 ~ 167 (356)
.
T Consensus 326 m 326 (503)
T 1gyt_A 326 M 326 (503)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A | Back alignment and structure |
|---|
Probab=85.66 E-value=14 Score=35.30 Aligned_cols=123 Identities=10% Similarity=-0.027 Sum_probs=71.2
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecC----CCce--------------EEEEecCCCCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK----NKPL--------------ILLKWPGSNPQL 90 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~----~~~n--------------v~~~~~g~~~~~ 90 (356)
+-+.+.++|++.|.. --.-...+++..+.+++.|++++.++... +.+. +..+|.|.+. .
T Consensus 168 ~~~~~aR~L~n~P~n--~~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~gS~~pPrli~l~y~~~~~-~ 244 (491)
T 2hc9_A 168 ESVRETARLIDTPAN--ILTTDALVDEAVKVGNATGSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEVPGS-T 244 (491)
T ss_dssp HHHHHHHHHHHSCTT--TSCHHHHHHHHHHHHHHTTCEEEEEETHHHHHHTCHHHHHHHTTSSSCCEEEEEEECCTTC-S
T ss_pred HHHHHHHHHhcCCch--hCCHHHHHHHHHHHHhhcCcEEEEEeHHHHHhCCCCcEEEecccCCCCCEEEEEEeCCCCC-C
Confidence 445677888887773 23457888999999999999998766421 2222 3334433322 2
Q ss_pred CcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 91 ~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
++|+|.|-==|...++ ..-.|-..- .+.--|++|.|+.+.+++.+.+.+. +.+|..++...|-.
T Consensus 245 ~~i~LVGKGiTFDsGG--~slKp~~~M---------~~Mk~DM~GAAaVlg~~~a~a~l~l--~vnv~~~l~~~ENm 308 (491)
T 2hc9_A 245 EHIALVGKGVVYDTGG--LQIKTKTGM---------PNMKRDMGGAAGMLEAYSALVKHGF--SQTLHACLCIVENN 308 (491)
T ss_dssp CEEEEEEEEEEEECCT--TSCCCTTTS---------TTGGGGGHHHHHHHHHHHHHHTTTC--CSEEEEEEEEEEEC
T ss_pred CcEEEEcCceEecCCC--ccCCCCcCh---------hhccccccHHHHHHHHHHHHHHcCC--CceEEEEEEeeecC
Confidence 3444444321111111 011111100 0112236889999999999988754 67899888888753
|
| >1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E* 2j9a_A* 2ewb_A* | Back alignment and structure |
|---|
Probab=83.22 E-value=12 Score=35.85 Aligned_cols=121 Identities=12% Similarity=-0.010 Sum_probs=69.9
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCC--CceEEEeec----CCCceEE--------------EEecCCC-
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALS--LESQTLEFA----KNKPLIL--------------LKWPGSN- 87 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g--~~~~~~~~~----~~~~nv~--------------~~~~g~~- 87 (356)
+-+.+.|+|++.|.. --.-...+++..+.++++| ++++.++.. -+.+.++ .+|.|.+
T Consensus 162 ~~~~laRdLvn~P~N--~~tP~~lA~~a~~l~~~~g~~~~v~Vl~~~~l~~~gmg~~laVg~GS~~pPrli~l~y~g~~~ 239 (484)
T 1lam_A 162 SGQNLARRLMETPAN--EMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPN 239 (484)
T ss_dssp HHHHHHHHHHHSCTT--TSCHHHHHHHHHHHHHHHCSSEEEEEECHHHHHHTTCHHHHHHHTTSSSCCEEEEEEEECSSS
T ss_pred HHHHHHHHhhCCChh--hcCHHHHHHHHHHHHHHcCCceEEEEEeHHHHHHCCCCceeeeccCCCCCCeEEEEEECCCCC
Confidence 344678889988874 2345778888899999999 888876532 1333333 3333322
Q ss_pred CCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCccc---chHHHHHHHHHHHHHHHcCCCCcccEEEEEeec
Q 018435 88 PQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQD---MKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPD 164 (356)
Q Consensus 88 ~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D---~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~ 164 (356)
+..++|+|.|-==|...++ -+-.| +.|..+ |++|.|+.+.+++.+.+.+. +.+|+.+....
T Consensus 240 ~~~~~i~LVGKGITFDsGG--~slKp------------~~~M~~MK~DMgGAAaVlg~~~aia~l~l--~vnv~~~i~~~ 303 (484)
T 1lam_A 240 ASEPPLVFVGKGITFDSGG--ISIKA------------AANMDLMRADMGGAATICSAIVSAAKLDL--PINIVGLAPLC 303 (484)
T ss_dssp TTSCCEEEEECEEEEECCT--TSCCC------------STTGGGGGGTTHHHHHHHHHHHHHHHTTC--SSEEEEEEEEE
T ss_pred CCCCcEEEEecceEEcCCC--cCCcC------------ccchhhhhccchHHHHHHHHHHHHHHcCC--CeeEEEEEEee
Confidence 1112343333211111111 00111 112222 25888999999999998864 67898888888
Q ss_pred ccc
Q 018435 165 EEI 167 (356)
Q Consensus 165 EE~ 167 (356)
|-.
T Consensus 304 ENm 306 (484)
T 1lam_A 304 ENM 306 (484)
T ss_dssp EEC
T ss_pred ccC
Confidence 753
|
| >2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.19 E-value=0.41 Score=45.55 Aligned_cols=47 Identities=17% Similarity=0.046 Sum_probs=35.5
Q ss_pred CeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHH
Q 018435 122 GNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEK 175 (356)
Q Consensus 122 g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 175 (356)
+.+.++ ..||+.+++++|.+++.++ ....+++++| ..||.|+ +|+.-
T Consensus 227 ~~I~s~-~lDdr~~~~~~l~al~~~~----~~~~~v~~~f-d~EEVGs-~ga~g 273 (428)
T 2ijz_A 227 EFIAGA-RLDNLLSCHAGLEALLNAE----GDENCILVCT-DHEEVGS-CSHCG 273 (428)
T ss_dssp SSSSCC-CSSCSSTTTTTTTHHHHTT----SCSSSCEEEE-CBSCTTT-TCHHH
T ss_pred CeEEee-cCccHHHHHHHHHHHHhcc----cCCceEEEEE-eccccCc-cchhh
Confidence 344444 4799999999999988764 3457888888 8999997 57654
|
| >3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA, xanthomonas oryzae PV. ORYZ KACC10331, hydrolase, manganese; 2.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=82.36 E-value=14 Score=35.38 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=72.0
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHC-CCceEEEeec----CCCc--------------eEEEEecCCCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL-SLESQTLEFA----KNKP--------------LILLKWPGSNPQ 89 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~-g~~~~~~~~~----~~~~--------------nv~~~~~g~~~~ 89 (356)
+-+.+.|+|++.|.. --.-...+++..+.++++ |++++.++.. -+.+ -+..+|.|.+ .
T Consensus 177 ~~~~~aRdL~n~P~n--~~~P~~~a~~a~~~~~~~~g~~v~v~~~~~l~~~gmg~~laVg~gS~~pPrli~l~y~g~~-~ 253 (490)
T 3jru_B 177 EGVEFARELGNLPPN--YCTPAYLADTAAAFAGKFPGAEAEILDEAQMEALGMGSLLSVARGSANRPRLIVLKWNGGG-D 253 (490)
T ss_dssp HHHHHHHHHHHSCTT--TSCHHHHHHHHHHHHTTSTTEEEEEECHHHHHHTTCHHHHHHHHTCSSCCEEEEEEEETTT-T
T ss_pred HHHHHHHHhhcCCcc--ccCHHHHHHHHHHHHhhcCCCeEEEEcHHHHHhCCCCcEEEEccCCCCCCEEEEEEEcCCC-C
Confidence 356688888888874 234577888888888887 9988876532 1222 2334444443 2
Q ss_pred CCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 90 LPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 90 ~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
.++|.|.|-==|...++ -+-.|-..-. +.--|++|.|+.+.+++.+.+.+. +.+|+.+....|-.
T Consensus 254 ~~~i~LVGKGiTFDsGG--~slKp~~~M~---------~Mk~DM~GAAaV~g~~~a~a~l~l--~vnv~~~i~~~ENm 318 (490)
T 3jru_B 254 ARPYVLVGKGITFDTGG--VNLKTQGGIE---------EMKYDMCGGATVIGTFVATVKAEL--PINLVVVVPAVENA 318 (490)
T ss_dssp SCCEEEEECEEEEECCT--TSCCCSSCGG---------GGGGGGHHHHHHHHHHHHHHHTTC--SSEEEEEEEEEEEC
T ss_pred CCcEEEEcCeeEecCCC--ccCCCcccHh---------hCcccchHHHHHHHHHHHHHHcCC--CcEEEEEEEeeccC
Confidence 34455544321111111 1111111000 111235888999999999998864 67898888888753
|
| >3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962 aminopeptidase, hydrolase, manganese, metal-binding, protea structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=81.69 E-value=2.5 Score=40.25 Aligned_cols=124 Identities=11% Similarity=0.057 Sum_probs=72.6
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecC---CCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK---NKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~---~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
+-+.+.|+|++.|.. --.-...+++..+.+++.|++++.++... +.+.+++.=+|+. ..|.++.. ++ . +.+
T Consensus 168 ~~~~laRdLvn~P~N--~~tP~~~A~~a~~la~~~g~~v~V~~~~~~~~gmg~~laVg~GS~-~pPrli~l-~y-~-~~~ 241 (482)
T 3ij3_A 168 TTIYLIRDLINTPAE--DMGPSELAQAVKHVAKEFEAKVKIIESKDLETEFPAIYAVGRAGS-RPPLLIDL-KW-G-DIK 241 (482)
T ss_dssp HHHHHHHHHHHSCGG--GSSHHHHHHHHHHHHHHHTCEEEEEEHHHHHHHCHHHHHHHTTSS-SCCEEEEE-EE-S-CTT
T ss_pred HHHHHHHHHhcCCcc--ccCHHHHHHHHHHHHHHcCCeEEEEchHHHHcCCCcEEEEccCCC-CCCEEEEE-Ee-C-CCC
Confidence 456788899998874 23457788888899999999988765321 2333333334443 22333333 33 1 111
Q ss_pred CCCCCCCCCCeeeCCCCeEEecCc---------c---cchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 106 PSKWSHHPFGAHLDSQGNIFARGS---------Q---DMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 106 ~~~w~~~P~~~~~~~~g~~~GrG~---------~---D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
.+|... + .+|.-|=-|- . -|++|.|+.+.+++.+.+.+. +.+|..+....|-.
T Consensus 242 -----~~~i~L-V-GKGITFDsGGlslKp~~~M~~MK~DMgGAAaVlg~~~aia~l~l--pvnv~~ii~~~ENm 306 (482)
T 3ij3_A 242 -----APKVTL-V-GKGVCFDSGGLDIKTPGGMLLMKKDMGGAAHALGLARMIMLQQL--PVRLRLLIPAVENA 306 (482)
T ss_dssp -----SCEEEE-E-ECEEEEECCTTSCCCHHHHTTGGGGGHHHHHHHHHHHHHHHTTC--SSEEEEEEEEEEEC
T ss_pred -----CCeEEE-E-ccceEeecCCccCcCccchhhccccchHHHHHHHHHHHHHHcCC--CceEEEEEEeeccC
Confidence 122211 1 2222222221 1 235888999999999998864 67899988888753
|
| >3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* 3t8w_A* | Back alignment and structure |
|---|
Probab=81.18 E-value=25 Score=33.85 Aligned_cols=122 Identities=11% Similarity=-0.031 Sum_probs=71.5
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeec----CCCc--------------eEEEEecCCCCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA----KNKP--------------LILLKWPGSNPQL 90 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~----~~~~--------------nv~~~~~g~~~~~ 90 (356)
+-+.+.|+|++.|.. --.-...++...+.++++|++++.++.. -+.+ -++.+|.|.+...
T Consensus 206 ~~v~laRdLvn~P~N--~ltP~~lA~~a~~la~~~g~~v~Vl~~~~l~~~gmg~~laVg~GS~~pPrli~l~y~g~~~~~ 283 (528)
T 3kr4_A 206 FGTYYASQLIAAPSN--YCNPVSLSNAAVELAQKLNLEYKILGVKELEELKMGAYLSVGKGSMYPNKFIHLTYKSKGDVK 283 (528)
T ss_dssp HHHHHHHHHHHSCTT--TSCHHHHHHHHHHHHHHHTCEEEEECHHHHHHTTCHHHHHHGGGCSSCCEEEEEEEECSSCCC
T ss_pred HHHHHHHHHhhCCcc--ccCHHHHHHHHHHHHHHcCCeEEEeeHHHHHhcCCCeEEeeccCCCCCCEEEEEEEcCCCCCC
Confidence 346688889988874 2344677788888888899999876632 1222 3444555443333
Q ss_pred CcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecC--ccc---chHHHHHHHHHHHHHHHcCCCCcccEEEEEeecc
Q 018435 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARG--SQD---MKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165 (356)
Q Consensus 91 ~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG--~~D---~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~E 165 (356)
++|.|.|-==|...++ ..-.|- .| ..+ |.+|.|+.+.+++++.+.+ ..+.+|..+....|
T Consensus 284 ~~iaLVGKGITFDsGG--~slKp~------------~g~~M~~MK~DM~GAAaVlg~~~aia~l~-~~~vnv~~vi~~~E 348 (528)
T 3kr4_A 284 KKIALVGKGITFDSGG--YNLKAA------------PGSMIDLMKFDMSGCAAVLGCAYCVGTLK-PENVEIHFLSAVCE 348 (528)
T ss_dssp EEEEEEEEEEEEECCT--TSCSCS------------TTCCGGGGGGGGHHHHHHHHHHHHHHHHC-CSSEEEEEEEEEEE
T ss_pred CcEEEecCceEeecCC--cccCCC------------CCcCHHHhhcCcchHHHHHHHHHHHHhcC-CCCceEEEEEEeec
Confidence 4555555422222211 111111 12 112 3578888999999988875 22467888888777
Q ss_pred cc
Q 018435 166 EI 167 (356)
Q Consensus 166 E~ 167 (356)
-.
T Consensus 349 Nm 350 (528)
T 3kr4_A 349 NM 350 (528)
T ss_dssp EC
T ss_pred cC
Confidence 53
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 356 | ||||
| g1q7l.1 | 280 | c.56.5.4 (A:,B:) Aminoacylase-1, catalytic domain | 1e-46 | |
| d1lfwa1 | 272 | c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV { | 9e-18 | |
| d1vgya1 | 262 | c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimel | 3e-15 | |
| d1cg2a1 | 276 | c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, | 4e-14 | |
| d1fnoa4 | 295 | c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripepti | 2e-13 | |
| d1lfwa2 | 196 | d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactoba | 5e-10 | |
| d1rtqa_ | 291 | c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolyti | 2e-07 | |
| d2grea2 | 233 | c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptid | 1e-04 | |
| d1z2la1 | 293 | c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydro | 3e-04 | |
| d3bi1a3 | 304 | c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypep | 3e-04 |
| >d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase PepV species: Lactobacillus delbrueckii [TaxId: 1584]
Score = 80.0 bits (196), Expect = 9e-18
Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 10/203 (4%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLE---FAKNKPLILLKWP 84
D+I++ + ID+S+ + T +A++ + F
Sbjct: 14 DAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENFANYAGRV 73
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
+ + H DVVP+ W+ PF +D +G I+ RGS D K + +
Sbjct: 74 NFGAGDKRLGIIGHMDVVPAGEG-WTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGML 132
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDY-- 202
LK +GF+P + + +EE G + + ++ D ++
Sbjct: 133 LLKEAGFKPKKKIDFVLGTNEETNW-VGIDYYLKHEPT--PDIVFSPDAEYPIINGEHYV 189
Query: 203 -RAFYAERCPWWLVIKARGAPGH 224
+ + + K G PGH
Sbjct: 190 PGSDPMVQTLLKVYEKQTGKPGH 212
|
| >d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Succinyl-diaminopimelate desuccinylase, catalytic domain species: Neisseria meningitidis [TaxId: 487]
Score = 72.7 bits (177), Expect = 3e-15
Identities = 46/274 (16%), Positives = 80/274 (29%), Gaps = 18/274 (6%)
Query: 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPG 85
++ +E + + + PD + K + + + ++ + F K + L +
Sbjct: 1 TETQSLELAKELISRPS--VTPDDRDCQKLMAERLHKIGFAAEEMHFGNTKNIWLRRGTK 58
Query: 86 SNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR 145
+ P + HTDVVP+ P + P + G ++ RG+ DMK ++ A R
Sbjct: 59 A----PVVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACER 114
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVL-DEGLASTTEDYRA 204
A S+ L DEE DG K D + + E A
Sbjct: 115 FVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMI 174
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGE 264
R K E S RF + + E
Sbjct: 175 KNGRRPFLTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAMAQEL-----IELG 229
Query: 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298
+ + + N P + I
Sbjct: 230 PSNATIHQINENVRL------NDIPKLSAVYEGI 257
|
| >d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Carboxypeptidase G2, catalytic domain species: Pseudomonas sp., strain rs-16 [TaxId: 306]
Score = 69.5 bits (169), Expect = 4e-14
Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 10/166 (6%)
Query: 18 IIFSSPAKSDDSIIERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQTLEFA--K 74
++F + ++I+ + I+T + A F+ A+ + L + A
Sbjct: 6 VLFQAATDEQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLV 65
Query: 75 NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKC 134
I+ K G ++LL SH D V + + PF + G D K
Sbjct: 66 VGDNIVGKIKGRGG--KNLLLMSHMDTVYLKG-ILAKAPFRVE---GDKAYGPGIADDKG 119
Query: 135 VGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
L ++ LK G + ++ + F DEE G G+
Sbjct: 120 GNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSF-GSRDLIQEE 164
|
| >d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Peptidase T (tripeptidase), catalytic domain species: Salmonella typhimurium [TaxId: 90371]
Score = 68.0 bits (165), Expect = 2e-13
Identities = 40/227 (17%), Positives = 66/227 (29%), Gaps = 44/227 (19%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNAS--------KFILAQAEALSLESQTLEFAKNKPLI 79
D ++ERF Y+ +DT + S + + Q E + L + TL L+
Sbjct: 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLSEKGT--LM 59
Query: 80 LLKWPGSNPQLPSILLNSHTDVVPSEP--------------------------SKWSHHP 113
+P+I SH D P S
Sbjct: 60 ATLPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPV 119
Query: 114 FGAHLDSQ---GNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170
L + D K + + A+ LK + P + ++F PDEE+G
Sbjct: 120 LHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKGNPI-PHGDIKVAFTPDEEVGK- 177
Query: 171 DGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIK 217
GA+ F +D G E + ++
Sbjct: 178 -GAKHFDVEAF--GAQWAYTVDGGGVGELEFENNMREKVVEHPHILD 221
|
| >d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Aminopeptidase PepV species: Lactobacillus delbrueckii [TaxId: 1584]
Score = 56.0 bits (134), Expect = 5e-10
Identities = 23/182 (12%), Positives = 58/182 (31%), Gaps = 18/182 (9%)
Query: 156 SVYLSFVPDEEIGGHDGAEKFADSHVFN---SLNVGIVLDEGLASTTEDYRAF------- 205
++ SF D+ G + +KF N + + L + Y +F
Sbjct: 5 TLEFSFKNDDTKGDY-VLDKFKAGIATNVTPQVTRATISGPDLEAVKLAYESFLADKELD 63
Query: 206 -YAERCPWWLVIKARGAPGHGAKLYD-NSAMENLFKSIESVRRFRASQ----FDLVKAGL 259
E I G H + ++ L ++ + F
Sbjct: 64 GSFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHE 123
Query: 260 KAEGEVVSVNMAFLKAGTPSPNGFVM-NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318
G+ + + G + + + +A ++R P TD +++ ++++++++
Sbjct: 124 DFYGKKLGIFHHDDLMGDLASSPSMFDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFS 183
Query: 319 PA 320
Sbjct: 184 GI 185
|
| >d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase species: Aeromonas proteolytica [TaxId: 671]
Score = 49.5 bits (117), Expect = 2e-07
Identities = 31/166 (18%), Positives = 48/166 (28%), Gaps = 27/166 (16%)
Query: 32 ERFRAYLQIDTSQPN-----PDYTNASKFILAQAEALSLESQTLEF------AKNKPLIL 80
+ + S N AS +I ++ +ALS N+ ++
Sbjct: 20 SQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVV 79
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYL 140
+ GS I++ H D + GA D
Sbjct: 80 MTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGAD-------------DDASGIAAVT 126
Query: 141 EAIRRLKASGFQPVRSVYLSFVPDEE---IGGHDGAEKFADSHVFN 183
E IR L + FQP RS+ EE G D A ++
Sbjct: 127 EVIRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSEGKNV 172
|
| >d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Deblocking aminopeptidase YhfE species: Bacillus cereus [TaxId: 1396]
Score = 40.7 bits (95), Expect = 1e-04
Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 46/198 (23%)
Query: 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQ 89
+E + + I + P+ + FI ++E++ NK ++L G N
Sbjct: 6 TMELIKELVSIPS--PSGNTAKIINFIENYVSEWNVETKR----NNKGALILTVKGKND- 58
Query: 90 LPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS 149
H AH+D+ D V + L+ I+RL+
Sbjct: 59 -------------------AQHRLLTAHVDTL---------DKVSVAIL-LKLIKRLQDE 89
Query: 150 GFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN--SLNVGIVLD------EGLASTTED 201
+ + +EEIG G ++++G + D ++ +D
Sbjct: 90 NVTLPYTTHFLISNNEEIGY--GGNSNIPEETVEYLAVDMGALGDGQASDEYTVSICAKD 147
Query: 202 YRAFYAERCPWWLVIKAR 219
Y LV A+
Sbjct: 148 SSGPYHYALRKHLVELAK 165
|
| >d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Allantoate amidohydrolase AllC catalytic domain species: Escherichia coli [TaxId: 562]
Score = 39.7 bits (92), Expect = 3e-04
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 26/120 (21%)
Query: 47 PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106
P++ + + A LE+ + N + + G+ +L SH D V
Sbjct: 33 PEWLETQQQFKKRMAASGLET-RFDEVGN---LYGRLNGTEYPQEVVLSGSHIDTVV--- 85
Query: 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166
G+ D + + AI LK P+R+V + + +EE
Sbjct: 86 -------------------NGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEE 126
|
| >d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: FolH catalytic domain-like domain: Glutamate carboxypeptidase II FOLH1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 3e-04
Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 31/164 (18%)
Query: 27 DDSIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFAKNKPL---- 78
D+ E + +L T P+ +K I +Q + L+S L
Sbjct: 7 DELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLEVTRI 66
Query: 79 --ILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVG 136
++ G+ ++L H D V
Sbjct: 67 YNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQ--------------------SGAAVV 106
Query: 137 MQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
+ + + LK G++P R++ + EE G G+ ++A+ +
Sbjct: 107 HEIVRSFGTLKKEGWRPRRTILFASWDAEEFGLL-GSTEWAEEN 149
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 356 | |||
| g1q7l.1 | 280 | Aminoacylase-1, catalytic domain {Human (Homo sapi | 100.0 | |
| d1vgya1 | 262 | Succinyl-diaminopimelate desuccinylase, catalytic | 100.0 | |
| d1cg2a1 | 276 | Carboxypeptidase G2, catalytic domain {Pseudomonas | 99.96 | |
| d1lfwa1 | 272 | Aminopeptidase PepV {Lactobacillus delbrueckii [Ta | 99.95 | |
| d1ysja1 | 261 | Protein YxeP {Bacillus subtilis [TaxId: 1423]} | 99.86 | |
| d1xmba1 | 273 | IAA-amino acid hydrolase, catalytic domain {Mouse- | 99.82 | |
| d1vhea2 | 275 | Hypothetical protein YsdC, catalytic domain {Bacil | 99.81 | |
| d2grea2 | 233 | Deblocking aminopeptidase YhfE {Bacillus cereus [T | 99.77 | |
| d1vhoa2 | 248 | Putative endoglucanase TM1048, catalytic domain {T | 99.76 | |
| d1yloa2 | 264 | Aminopeptidase YpdE {Shigella flexneri [TaxId: 623 | 99.75 | |
| d1tkja1 | 277 | Aminopeptidase {Streptomyces griseus [TaxId: 1911] | 99.74 | |
| d2fvga2 | 255 | Endoglucanase TM1049 {Thermotoga maritima [TaxId: | 99.73 | |
| d1fnoa4 | 295 | Peptidase T (tripeptidase), catalytic domain {Salm | 99.72 | |
| d1rtqa_ | 291 | Aminopeptidase {Aeromonas proteolytica [TaxId: 671 | 99.72 | |
| d1z2la1 | 293 | Allantoate amidohydrolase AllC catalytic domain {E | 99.69 | |
| d1vgya2 | 113 | Succinyl-diaminopimelate desuccinylase {Neisseria | 99.65 | |
| d1r3na1 | 322 | Peptidase-like beta-alanine synthase, catalytic do | 99.63 | |
| d1cg2a2 | 113 | Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 | 99.62 | |
| d1ysja2 | 115 | Protein YxeP {Bacillus subtilis [TaxId: 1423]} | 99.62 | |
| d1xmba2 | 119 | IAA-amino acid hydrolase {Mouse-ear cress (Arabido | 99.57 | |
| d3bi1a3 | 304 | Glutamate carboxypeptidase II FOLH1 {Human (Homo s | 99.56 | |
| d1de4c3 | 294 | Transferrin receptor ectodomain, protease-like dom | 99.45 | |
| d1z2la2 | 117 | Allantoate amidohydrolase AllC {Escherichia coli [ | 99.44 | |
| d2afwa1 | 329 | Glutaminyl-peptide cyclotransferase, QPCT {Human ( | 99.43 | |
| d1r3na2 | 116 | Peptidase-like beta-alanine synthase {Yeast (Sacch | 99.37 | |
| d1lfwa2 | 196 | Aminopeptidase PepV {Lactobacillus delbrueckii [Ta | 99.2 | |
| d1y0ya2 | 255 | Frv operon protein FrvX, catalytic domain {Pyrococ | 97.83 | |
| d1y0ya2 | 255 | Frv operon protein FrvX, catalytic domain {Pyrococ | 97.41 | |
| d1y7ea2 | 322 | Probable aminopeptidase ApeA {Borrelia burgdorferi | 96.15 | |
| d1fnoa3 | 113 | Peptidase T (tripeptidase) {Salmonella typhimurium | 96.04 | |
| d1lama1 | 325 | Leucine aminopeptidase, C-terminal domain {Cow (Bo | 85.73 | |
| d1gyta2 | 325 | Leucine aminopeptidase, C-terminal domain {Escheri | 84.62 |
| >d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Succinyl-diaminopimelate desuccinylase, catalytic domain species: Neisseria meningitidis [TaxId: 487]
Probab=100.00 E-value=2.9e-36 Score=272.11 Aligned_cols=158 Identities=25% Similarity=0.401 Sum_probs=135.8
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC-
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP- 106 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~- 106 (356)
.++++++++|++|||++ ++|+++++||.++|+++||++++++. .+.+|+++...+ ..|+|+|++||||||+++
T Consensus 3 ~e~lell~~Lv~i~S~s--~~e~~~a~~l~~~l~~~G~~~~~~~~-~~~~nv~~~~~~---~~~~l~l~~H~DtVp~g~~ 76 (262)
T d1vgya1 3 TQSLELAKELISRPSVT--PDDRDCQKLMAERLHKIGFAAEEMHF-GNTKNIWLRRGT---KAPVVCFAGHTDVVPTGPV 76 (262)
T ss_dssp SHHHHHHHHHHTSCCBT--TCCTTHHHHHHHHHHTTTCEEEECCB-TTBCEEEEEECS---SSSEEEEEEECCBCCCCCG
T ss_pred HHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHCCCeEEEEEe-CCccEEEEEecC---CCCeEEEEeccccccCCcc
Confidence 57899999999999985 57889999999999999999987654 467899988744 248999999999999976
Q ss_pred CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccccc--C
Q 018435 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN--S 184 (356)
Q Consensus 107 ~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~--~ 184 (356)
+.|+.+||++++ +||++||||++|||++++++|+|++.+++.+..+++++.|+|+++||.++..|++++.+..... .
T Consensus 77 ~~w~~~p~~~~~-~dg~iyGrGa~D~Kg~~a~~l~a~~~l~~~~~~~~~~~~l~~~~dEE~~~~~G~~~l~~~~~~~~~~ 155 (262)
T d1vgya1 77 EKWDSPPFEPAE-RDGRLYGRGAADMKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDEL 155 (262)
T ss_dssp GGSSSCTTSCEE-ETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCTTSHHHHHHHHHHTTCC
T ss_pred ccccccccccEE-EcCceEeeccccccccHHHHHHHHHHHHHhcccCCCCeEEEEEecCccccccCHHHHHhHhhhcCCC
Confidence 789999999999 9999999999999999999999999999988888999999999998877678999988753222 2
Q ss_pred CceEEEEe
Q 018435 185 LNVGIVLD 192 (356)
Q Consensus 185 ~~~~~~~~ 192 (356)
.+++++.+
T Consensus 156 ~~~~ivgE 163 (262)
T d1vgya1 156 IDYCIVGE 163 (262)
T ss_dssp EEEEEECC
T ss_pred cccccccC
Confidence 45555543
|
| >d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Carboxypeptidase G2, catalytic domain species: Pseudomonas sp., strain rs-16 [TaxId: 306]
Probab=99.96 E-value=1.5e-28 Score=222.42 Aligned_cols=157 Identities=21% Similarity=0.281 Sum_probs=136.1
Q ss_pred ChhHHHHHHHhhhcccCCCCCcCh---hHHHHHHHHHHHHCCCceEEEeecC--CCceEEEEecCCCCCCCcEEEEeecc
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDY---TNASKFILAQAEALSLESQTLEFAK--NKPLILLKWPGSNPQLPSILLNSHTD 100 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e---~~~~~~l~~~l~~~g~~~~~~~~~~--~~~nv~~~~~g~~~~~~~il~~aH~D 100 (356)
...++++.|++|++|||.| .++ .++++|+.++|+++|++++.++... ..+|++++++|++ .|+|+|+||+|
T Consensus 14 ~~~~~i~~L~~lv~i~S~s--~~~~~~~~~a~~l~~~l~~lG~~~~~~~~~~~~~~~nv~a~~~g~~--~~~vll~~H~D 89 (276)
T d1cg2a1 14 EQPAVIKTLEKLVNIETGT--GDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGRG--GKNLLLMSHMD 89 (276)
T ss_dssp HHHHHHHHHHHHHTSCCBT--TCHHHHHHHHHHHHHHHHHTTCEEEEEECSTTCCSEEEEEEEECSS--CCCEEEEEECC
T ss_pred hHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCEEEEEECCCC--CCeEEEEeccc
Confidence 3578999999999999974 444 4789999999999999999877543 3579999998875 48999999999
Q ss_pred cCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccc
Q 018435 101 VVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (356)
Q Consensus 101 tvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (356)
|||+. ..|..+||+ + +++++||||++|||++++++|++++.|++.+..++++|.|+|+++||.|+ .|+++++++.
T Consensus 90 tV~~~-~~w~~~Pf~--~-~~~~l~G~G~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~-~g~~~~~~~~ 164 (276)
T d1cg2a1 90 TVYLK-GILAKAPFR--V-EGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGS-FGSRDLIQEE 164 (276)
T ss_dssp BSCCT-THHHHSCCE--E-ETTEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGTT-TTTHHHHHHH
T ss_pred ccccc-cccCCCcce--e-ecCeeeecccccccccHHHHHHHHHHHHHcCCCCCCCEEEEEEccccccc-ccHHHHHHhc
Confidence 99986 579999995 5 89999999999999999999999999999998899999999999999997 6999998864
Q ss_pred cccCCceEEEEe
Q 018435 181 VFNSLNVGIVLD 192 (356)
Q Consensus 181 ~~~~~~~~~~~~ 192 (356)
. ...+++++++
T Consensus 165 ~-~~~d~~i~~E 175 (276)
T d1cg2a1 165 A-KLADYVLSFE 175 (276)
T ss_dssp H-HHCSEEEECC
T ss_pred c-ccCCEEEEec
Confidence 2 3467777765
|
| >d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase PepV species: Lactobacillus delbrueckii [TaxId: 1584]
Probab=99.95 E-value=1.7e-27 Score=214.96 Aligned_cols=158 Identities=22% Similarity=0.356 Sum_probs=129.6
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCc----------ChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEec-CCCCCCC
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNP----------DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP-GSNPQLP 91 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~----------~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~-g~~~~~~ 91 (356)
++...++++++|++|++|||+++.. +..++++++.++++++|++++.++ |+++... |+ +.|
T Consensus 9 ~~~~~d~~l~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~g~--~~~ 80 (272)
T d1lfwa1 9 AEAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENFA------NYAGRVNFGA--GDK 80 (272)
T ss_dssp HHTTHHHHHHHHHHHHTSCCBCCGGGCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEET------TTEEEEEECC--CSS
T ss_pred HHHHHHHHHHHHHHHhCCCCcCCCcccccccccchHHHHHHHHHHHHHHHcCCeeeeeC------ceEEEEEcCC--CCC
Confidence 3456899999999999999986422 135778889999999999887632 2333432 33 348
Q ss_pred cEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccc
Q 018435 92 SILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHD 171 (356)
Q Consensus 92 ~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~ 171 (356)
+|+|+||+||||++ ++|+++||++.+++||++||||++|||++++++|+|++.|++.+..++++|.|+|+++||+|+ .
T Consensus 81 ~i~l~~H~DvVp~~-~~W~~dPf~~~i~~dg~l~GrG~~D~k~~~~~~~~a~~~l~~~~~~~~~~i~~~~~~~EE~g~-~ 158 (272)
T d1lfwa1 81 RLGIIGHMDVVPAG-EGWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKIDFVLGTNEETNW-V 158 (272)
T ss_dssp EEEEEEECCBCCCC-SCCSSCTTSCEECTTCEEESTTSSSSHHHHHHHHHHHHHHHHHTCCCSSEEEEEEESCTTTTC-H
T ss_pred EEEEEeccceeecc-CCceeccccccccccceeeecccccccccHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccCC-c
Confidence 99999999999997 579999999987578999999999999999999999999999999999999999999999997 6
Q ss_pred cHHHHhccccccCCceEEEEe
Q 018435 172 GAEKFADSHVFNSLNVGIVLD 192 (356)
Q Consensus 172 G~~~~~~~~~~~~~~~~~~~~ 192 (356)
|+++++++.. ..++++..|
T Consensus 159 g~~~~~~~~~--~~~~~~~~d 177 (272)
T d1lfwa1 159 GIDYYLKHEP--TPDIVFSPD 177 (272)
T ss_dssp HHHHHHHHSC--CCSEEEESS
T ss_pred cHHHHHHhCC--CCCeEEecc
Confidence 9999998643 345555443
|
| >d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Protein YxeP species: Bacillus subtilis [TaxId: 1423]
Probab=99.86 E-value=2.7e-22 Score=177.56 Aligned_cols=185 Identities=16% Similarity=0.143 Sum_probs=144.5
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~ 106 (356)
.++++++.++|+++|+. +.+|.+++++|.++|+++|+++.. ......++++.++|.++ +|+|+|++|||++|..+
T Consensus 4 ~~~li~~rr~lh~~PEl--~~~E~~T~~~i~~~L~~~G~~v~~--~~~~~tgv~a~~~g~~~-gp~Ialrad~DALp~~e 78 (261)
T d1ysja1 4 HTRLINMRRDLHEHPEL--SFQEVETTKKIRRWLEEEQIEILD--VPQLKTGVIAEIKGRED-GPVIAIRADIDALPIQE 78 (261)
T ss_dssp HHHHHHHHHHHHHSCCC--TTCCHHHHHHHHHHHHHTTCEECC--CTTCSSCEEEEEECSSC-CCEEEEEEECCCBSCCC
T ss_pred HHHHHHHHHHHHhCcCc--CChHHHHHHHHHHHHHHCCCeEEE--ecCCceEEEEEECCCCc-CceEEEEecccccchhh
Confidence 58899999999999997 679999999999999999998743 22345679999987764 59999999999999865
Q ss_pred CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCc
Q 018435 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (356)
Q Consensus 107 ~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~ 186 (356)
. +..||... .+|.+++||. .++++++|.+++.|.+....++++|+|+|+|+||+++ |++++++++.++++|
T Consensus 79 ~--~~~~~~s~--~~G~~HaCGH---d~h~a~~lgaA~~l~~~~~~~~G~v~lifqPaEE~~~--Ga~~mi~~G~~d~vd 149 (261)
T d1ysja1 79 Q--TNLPFASK--VDGTMHACGH---DFHTASIIGTAMLLNQRRAELKGTVRFIFQPAEEIAA--GARKVLEAGVLNGVS 149 (261)
T ss_dssp C--CCCTTCCS--STTCBCTTSH---HHHHHHHHHHHHHHHTCGGGCSSEEEEEEESCTTTTC--HHHHHHHTTTTTTEE
T ss_pred h--ccCccccc--cCCceeccCc---chHHHHHHHHHHHHHHhcccCCCeEEEecccCccccc--chHHHHHcCCccccC
Confidence 2 45677765 6789999986 7888999999999998766788999999999999984 999999999999999
Q ss_pred eEEEEecCccCcCCcceeEEee-eeeEEEEEEEEecCCcc
Q 018435 187 VGIVLDEGLASTTEDYRAFYAE-RCPWWLVIKARGAPGHG 225 (356)
Q Consensus 187 ~~~~~~~g~~~p~~~~~i~~~~-~G~~~~~v~~~G~~~Hs 225 (356)
.++.++.....|.+.+.+..|. ........++.|+++|+
T Consensus 150 ~~~~~H~~p~~p~G~v~~~~G~~~A~~~~~~~~~~~~~~~ 189 (261)
T d1ysja1 150 AIFGMHNKPDLPVGTIGVKEGPLMASVQNDGTFLNAASEA 189 (261)
T ss_dssp EEEEEEEETTSCTTEEEECSEEEECCEEECGGGHHHHHHH
T ss_pred eeEEEccCCCCCCeEEEEccChhhcccceeEEEeCccchh
Confidence 8888886544455543333332 12222333344544443
|
| >d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: IAA-amino acid hydrolase, catalytic domain species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.82 E-value=2.9e-20 Score=166.26 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=124.4
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv 102 (356)
.+...++++++.++|+++|+. +.+|.++++++.++|+++|++++.- .+..++++.+. ++ .+|+|+|++|||++
T Consensus 8 ~~e~~~~li~~rr~lh~~PEl--~~~E~~T~~~i~~~L~~~g~~~~~~---~~~tg~~a~~~-~~-~~~~i~~rad~Dal 80 (273)
T d1xmba1 8 SPEVFDWMVKIRRKIHENPEL--GYEELETSKLIRSELELIGIKYRYP---VAITGVIGYIG-TG-EPPFVALRADMDAL 80 (273)
T ss_dssp --------------HHHSCCC--TTCCHHHHHHHHHHHHHHTCCEEEE---ETTTEEEEEEE-SS-SSCEEEEEEECCCB
T ss_pred ChHHHHHHHHHHHHHHhCcCc--CCcHHHHHHHHHHHHHHCCCeEEec---CCceEEEEEEC-CC-cceEEEEecccccc
Confidence 445668999999999999997 6799999999999999999987641 24567999994 33 24899999999999
Q ss_pred CCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccc
Q 018435 103 PSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF 182 (356)
Q Consensus 103 p~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~ 182 (356)
|..+. +..||... .+|.+|+||+ .++++++|.+++.|++....++++|+|+|+|+||+++ |++.+++++.+
T Consensus 81 p~~e~--~~~~~~s~--~~g~~HaCGH---d~h~a~~l~aa~~l~~~~~~~~g~v~~ifqPaEE~~~--Ga~~mi~~G~~ 151 (273)
T d1xmba1 81 PIQEG--VEWEHKSK--IAGKMHACGH---DGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLS--GAKKMREEGAL 151 (273)
T ss_dssp SCCCC--CCSTTCCS--STTCBCCSSH---HHHHHHHHHHHHHHHHTGGGCSSEEEEEEECCTTTTC--HHHHHHHTTTT
T ss_pred ccccc--cCcccccC--CCCccccccc---chHHHHHHHHHHHHHHhhhcCCCeEEEEEeccccccc--chhHHHHcCCc
Confidence 99752 34577765 6789999998 6899999999999998876789999999999999885 99999999999
Q ss_pred cCCceEEEEecCccCcCC
Q 018435 183 NSLNVGIVLDEGLASTTE 200 (356)
Q Consensus 183 ~~~~~~~~~~~g~~~p~~ 200 (356)
+++|.++.++.....|.+
T Consensus 152 ~~vd~~~~~H~~~~~~~G 169 (273)
T d1xmba1 152 KNVEAIFGIHLSARIPFG 169 (273)
T ss_dssp TTEEEEEEEEEEEEEETT
T ss_pred CCCCeeEEEeecCCCCcc
Confidence 999988888865444544
|
| >d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Hypothetical protein YsdC, catalytic domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.81 E-value=5.9e-20 Score=165.49 Aligned_cols=134 Identities=17% Similarity=0.184 Sum_probs=113.6
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~ 106 (356)
.++.+++|++|++|||+ +++|.+++++|.++|+++|++++. |..+|++++++|..+ .|+|+|.||||||+...
T Consensus 2 ~~~~~~~l~~l~~i~s~--sg~E~~v~~~l~~~l~~~g~~~~~----D~~gN~i~~~~g~~~-~~~i~l~~H~D~v~~~~ 74 (275)
T d1vhea2 2 LDETLTMLKDLTDAKGI--PGNEREVRQVMKSYIEPFADEVTT----DRLGSLIAKKTGAEN-GPKIMIAGHLDEVPHFE 74 (275)
T ss_dssp CCHHHHHHHHHHHSCCC--TTCCHHHHHHHHHHHGGGCSEEEE----CTTCCEEEEEESSTT-SCEEEEEEECCCCECCC
T ss_pred hHHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHHHcCCEEEE----eCCCcEEEEecCCCC-CCceeeecccccccccc
Confidence 36789999999999996 789999999999999999998876 788999999998764 58999999999998753
Q ss_pred CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcc
Q 018435 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 107 ~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
. . .. +++..++.|+.|||+|++++|++++.|++.+ +..+|.++|+.+||.|+ .|++.+...
T Consensus 75 ~-------~-~~-~~~~~~~~~~~Dd~~Gva~~l~~~~~l~~~~--~~~~v~~~~~~~EE~G~-~Ga~~~~~~ 135 (275)
T d1vhea2 75 F-------T-VM-NNEKFLLAKAWDNRIGCAIAIDVLRNLQNTD--HPNIVYGVGTVQEEVGL-RGAKTAAHT 135 (275)
T ss_dssp C-------E-EC-SSTTEEEETTHHHHHHHHHHHHHHHHHHTSC--CSSEEEEEEESCCTTTS-HHHHHHHHH
T ss_pred c-------e-ee-ecccccccCcccCccCHHHHHHHHHHHhcCC--CCceEEEEEecccccCC-cchhhhhhc
Confidence 1 1 12 5566666667899999999999999998764 46899999999999996 699887765
|
| >d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Deblocking aminopeptidase YhfE species: Bacillus cereus [TaxId: 1396]
Probab=99.77 E-value=4e-19 Score=155.55 Aligned_cols=127 Identities=20% Similarity=0.281 Sum_probs=106.0
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~ 106 (356)
.++++++|++|++|||+ +++|.++++||+++|+++|++++. +..+|++++++|+++ .|+|+|.||+|++
T Consensus 3 ~~e~le~lk~L~~ips~--Sg~e~~~~~~i~~~l~~~G~~~~~----d~~gniia~~~G~~~-~~~i~~~aH~Dt~---- 71 (233)
T d2grea2 3 TKETMELIKELVSIPSP--SGNTAKIINFIENYVSEWNVETKR----NNKGALILTVKGKND-AQHRLLTAHVDTL---- 71 (233)
T ss_dssp HHHHHHHHHHHHTSCCB--TTCCHHHHHHHHHHTTTSSSEEEE----CSSSCEEEEECCSEE-EEEEEEEEECCBC----
T ss_pred HHHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHHHcCCeEEE----ecCCCEEEEecCCCc-cccEEEEeccCcc----
Confidence 57899999999999995 789999999999999999999886 788899999998764 4899999999973
Q ss_pred CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCc
Q 018435 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (356)
Q Consensus 107 ~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~ 186 (356)
||+|++++|++++.|++.+..++++|+|+|+++||.|. +|++.+.. +++
T Consensus 72 -------------------------dk~g~a~~l~~~~~l~~~~~~~~~~i~~~ft~~EE~G~-~Ga~~~~~-----~~~ 120 (233)
T d2grea2 72 -------------------------DKVSVAILLKLIKRLQDENVTLPYTTHFLISNNEEIGY-GGNSNIPE-----ETV 120 (233)
T ss_dssp -------------------------THHHHHHHHHHHHHHHHHTCCCSEEEEEEEESCC-----CCCCCCCT-----TEE
T ss_pred -------------------------ccCcHHHHHHHHHHHHHCCCCCCceEEEEEEeCcccCc-hhHHhhcc-----CCc
Confidence 48999999999999999998999999999999999985 68755433 234
Q ss_pred eEEEEecCc
Q 018435 187 VGIVLDEGL 195 (356)
Q Consensus 187 ~~~~~~~g~ 195 (356)
..+.+|.+.
T Consensus 121 ~~iavD~~~ 129 (233)
T d2grea2 121 EYLAVDMGA 129 (233)
T ss_dssp EEEEECCCC
T ss_pred ccEEEEecc
Confidence 467777644
|
| >d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Putative endoglucanase TM1048, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=3.1e-18 Score=151.83 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=110.6
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSK 108 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~ 108 (356)
+..++|++|+++|++ +++|.++++||.++|++++.+++. |..+|++++++|++ .++|+|.||||+|+...
T Consensus 2 e~~~~l~~l~~~~~~--sg~E~~v~~~i~~~l~~~~~~~~~----d~~gNvia~~~g~~--~~~i~l~aH~D~v~~~~-- 71 (248)
T d1vhoa2 2 ETGKLLMELSNLDGP--SGYETNVVSYIKSVIEPFVDEAKT----TRHGSLIGYKKGKG--IGKLAFFAHVDEIIDQT-- 71 (248)
T ss_dssp CHHHHHHHHHHSCCB--TTCCHHHHHHHHHHHGGGCSEEEE----CTTSCEEEEECCSS--SCEEEEEEECCBCECCC--
T ss_pred CHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHHcCCEEEE----ecCCcEEEEecCCC--CceEEEeccccceeccc--
Confidence 357889999999996 789999999999999999998876 78899999998864 37899999999997542
Q ss_pred CCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcc
Q 018435 109 WSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 109 w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
+.. ++|+++|+ +.|||+|++++|++++.|++.+ ++.+|.|+|+.+||.|. .|++.+...
T Consensus 72 -------~~~-~~~~~~~~-a~Dd~~G~a~~l~~~~~l~~~~--~~~~v~~~~~~~EE~G~-~Ga~~~~~~ 130 (248)
T d1vhoa2 72 -------AFE-TNGKVVGK-ALDNRASCGVLVKVLEFLKRYD--HPWDVYVVFSVQEETGC-LGALTGAYE 130 (248)
T ss_dssp -------CEE-ETTEEEET-THHHHHHHHHHHHHHHHHTTCC--CSSEEEEEEECTTSSSH-HHHHHTTCC
T ss_pred -------ccc-cCCceecc-CCcccHhHHHHHHHHHHHhhcC--CCCceEEEEeecccCCC-Ccceehhhc
Confidence 123 78999999 5699999999999999998664 57899999999999995 799987664
|
| >d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase YpdE species: Shigella flexneri [TaxId: 623]
Probab=99.75 E-value=7e-18 Score=150.85 Aligned_cols=140 Identities=21% Similarity=0.303 Sum_probs=116.5
Q ss_pred HHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCCCCCC
Q 018435 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWS 110 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~ 110 (356)
+++|++|+++||+ +++|.++++++.++|+++|++++. |+.+|+++++++.. .|+|++.+|+|+|+...
T Consensus 3 ~~ll~~l~~~~s~--sg~E~~~~~~~~~~l~~~~~~v~~----D~~gNi~~~~~~~~--~~~v~~~~H~D~~~~~~---- 70 (264)
T d1yloa2 3 LSLLKALSEADAI--ASSEQEVRQILLEEAARLQKEVRF----DGLGSVLIRLNEST--GPKVMICAHMDEVFDTT---- 70 (264)
T ss_dssp HHHHHHHHHSCCB--TTBCHHHHHHHHHHHHHTTCCEEE----CTTCCEEEECCCCS--SCEEEEEEECCCCECCC----
T ss_pred HHHHHHHHcCCCC--CcCHHHHHHHHHHHHHhcCCEEEE----cCCCcEEEEECCCC--CceEEEecCcCcccccc----
Confidence 5899999999996 679999999999999999999876 78899999996653 48999999999998753
Q ss_pred CCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEE
Q 018435 111 HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIV 190 (356)
Q Consensus 111 ~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~ 190 (356)
|. .. ++++++|| +.||++|++++|++++.|++. .++.+|.|+|+.+||.|. .|++.+.... ..+..++
T Consensus 71 ---~~-~~-~~~~i~g~-a~D~~~gva~lle~~r~l~~~--~~~~~v~~~~~~~EE~G~-~Ga~~~~~~~---~~~~~~~ 138 (264)
T d1yloa2 71 ---FQ-VL-PHQRVMGK-AFDDRLSCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGL-RGGQTATRAV---SPDVAIV 138 (264)
T ss_dssp ---CE-EE-TTTEEEET-THHHHHHHHHHHHHHHHHTTC--CCSSEEEEEEESCCTTSS-HHHHHHHHHH---CCSEEEE
T ss_pred ---ce-ec-cccccccc-cccccccHHHHHHHHHHHhcC--CCCceEEEEEEeccccCC-CCcccccccc---ccccccc
Confidence 22 34 88999999 469999999999999999765 457899999999999995 7999887642 2345666
Q ss_pred EecC
Q 018435 191 LDEG 194 (356)
Q Consensus 191 ~~~g 194 (356)
+|..
T Consensus 139 ~D~~ 142 (264)
T d1yloa2 139 LDTA 142 (264)
T ss_dssp ECCC
T ss_pred cccc
Confidence 6643
|
| >d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase species: Streptomyces griseus [TaxId: 1911]
Probab=99.74 E-value=3.8e-18 Score=153.36 Aligned_cols=145 Identities=19% Similarity=0.339 Sum_probs=114.2
Q ss_pred CChhHHHHHHHhhhcccCCC------CCcChhHHHHHHHHHHHHCCCceEEEeecCC---CceEEEEecCCCCCCCcEEE
Q 018435 25 KSDDSIIERFRAYLQIDTSQ------PNPDYTNASKFILAQAEALSLESQTLEFAKN---KPLILLKWPGSNPQLPSILL 95 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s------~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~---~~nv~~~~~g~~~~~~~il~ 95 (356)
.....+.+.|.+|..+.+.+ .+.+++++++||.++|+++|++++...+... ..||+++++|++++ +.|++
T Consensus 4 i~~~~~~~~l~~l~~~~~~~~g~R~~gs~~~~~a~~yi~~~l~~~G~~~~~~~~~~~~~~~~Nvi~~~~g~~~~-~~i~~ 82 (277)
T d1tkja1 4 IPLANVKAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSGGATGYNLIANWPGGDPN-KVLMA 82 (277)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHTCEEEEEEEEETTEEEEEEEEECSCSEEE-EEEEE
T ss_pred CCHHHHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEeeeccCccccCeEEEECCCCCC-CEEEE
Confidence 34566777777777654432 2356789999999999999999887655432 35999999998654 78999
Q ss_pred EeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHH
Q 018435 96 NSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEK 175 (356)
Q Consensus 96 ~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 175 (356)
.+|+|+|+.++ |+.||++|++++|++++.|++.+..++++|+|+|+.+||.|. .|+++
T Consensus 83 ~aH~D~~~~~~---------------------Ga~D~~sgva~~le~ar~l~~~~~~~~~~i~~~~~~~EE~g~-~Gs~~ 140 (277)
T d1tkja1 83 GAHLDSVSSGA---------------------GINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGL-IGSKF 140 (277)
T ss_dssp EEECCCCTTSC---------------------CTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTS-HHHHH
T ss_pred Ecccccccccc---------------------ccCCCccchHHHHHHHHHHHhhcCCCCcceEEeecccccccc-cccHH
Confidence 99999998643 899999999999999999999988889999999999999995 69999
Q ss_pred Hhccccc---cCCceEEEEe
Q 018435 176 FADSHVF---NSLNVGIVLD 192 (356)
Q Consensus 176 ~~~~~~~---~~~~~~~~~~ 192 (356)
++++... ..+...+.+|
T Consensus 141 ~~~~~~~~~~~~i~~~inlD 160 (277)
T d1tkja1 141 YVNNLPSADRSKLAGYLNFD 160 (277)
T ss_dssp HHHHSCHHHHTTEEEEEEEC
T ss_pred HHHHhhccchhheeeeeccc
Confidence 9986321 2233445565
|
| >d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Endoglucanase TM1049 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=8.6e-19 Score=155.72 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=99.7
Q ss_pred HHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCCCCCCCC
Q 018435 33 RFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHH 112 (356)
Q Consensus 33 ~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~~~ 112 (356)
.|++|++|||. |+.|.++++|++++|+++|++++. |..+|++++++|+.+ .|+|+|.||+||||....
T Consensus 2 ~l~~l~~i~s~--sg~E~~v~~~~~~~l~~~g~~v~~----d~~gNii~~~~G~~~-~~~i~l~aH~Dtv~~~~~----- 69 (255)
T d2fvga2 2 YLKELSMMPGV--SGDEGKVRDFIKSKIEGLVDNLYT----DVLGNLIALKRGRDS-SKKLLVSAHMDEVFVSDY----- 69 (255)
T ss_dssp CHHHHHHSCCB--TTCCHHHHHHHHHHHGGGSSEEEE----CTTSCEEEEECCSEE-EEEEEEEEECCBCECCCC-----
T ss_pred hHHHHhcCCCC--CCCHHHHHHHHHHHHHHcCCeEEE----eCCCCEEEEecCCCC-CCceEEEeccccccccee-----
Confidence 37899999996 789999999999999999999886 788999999998764 489999999999998642
Q ss_pred CCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcc
Q 018435 113 PFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 113 P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
. .++..+++|+.|||+|++++|++++.++ .+..++.++|+.+||.|+ .|+..+...
T Consensus 70 -----~-~~~~~~~~ga~Dd~~Gva~~l~~~~~~~----~~~~~i~~~~t~~EE~G~-~g~~~~~~~ 125 (255)
T d2fvga2 70 -----I-EKNGRAVGKAFDDRAGCSVLIDVLESGV----SPAYDTYFVFTVQEETGL-RGSAVVVEQ 125 (255)
T ss_dssp -----E-EETTEEEESCHHHHHHHHHHHHHHHTCC----CCSEEEEEEEECCCC------CHHHHHH
T ss_pred -----c-cccccccCCcccchHhHHHHHHHHHHhc----ccccceEEEEEeecccCC-cchhhhhhh
Confidence 1 3445566678999999999998877543 357899999999999985 688877664
|
| >d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Peptidase T (tripeptidase), catalytic domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.72 E-value=8.7e-18 Score=152.22 Aligned_cols=157 Identities=24% Similarity=0.338 Sum_probs=120.6
Q ss_pred hHHHHHHHhhhcccCCCC--------CcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCC-CCCCcEEEEee
Q 018435 28 DSIIERFRAYLQIDTSQP--------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN-PQLPSILLNSH 98 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~--------~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~-~~~~~il~~aH 98 (356)
+++++.|.+|++|||.|. +.+|.++++||.++|+++||++..+ +..+|+++.+.+.. ...|+++|.+|
T Consensus 2 ~~~l~~l~~lv~i~S~S~~~~~~~p~~~~e~~~a~~l~~~l~~lG~~~~~i---d~~g~~~~~~~~~~~~~~~~v~~~~H 78 (295)
T d1fnoa4 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITL---SEKGTLMATLPANVEGDIPAIGFISH 78 (295)
T ss_dssp CSHHHHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHTCEEEEE---CTTCCEEEEECCSSCSCCCCEEEEEE
T ss_pred HHHHHHHHHHccccccCCCccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE---CCCCcEEEEecccCCCCCcceEEEEE
Confidence 568999999999999753 1257899999999999999987665 45678888886653 34589999999
Q ss_pred cccCCCCCC--------------------------CCCCCCCCeeeCCCCeEEecCc----ccchHHHHHHHHHHHHHHH
Q 018435 99 TDVVPSEPS--------------------------KWSHHPFGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKA 148 (356)
Q Consensus 99 ~Dtvp~~~~--------------------------~w~~~P~~~~~~~~g~~~GrG~----~D~k~~~a~~l~a~~~l~~ 148 (356)
+||||+... .|..+++.... .+.+++++|. +|+|+|+++++++++.+.+
T Consensus 79 ~Dtv~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~g~~~~~~D~k~G~aa~l~a~~~l~~ 157 (295)
T d1fnoa4 79 VDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLL-GQTLITTDGKTLLGADDKAGVAEIMTALAVLKG 157 (295)
T ss_dssp CCBCTTSCCSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCT-TSCEEECCSSSCCCHHHHHHHHHHHHHHHHHHS
T ss_pred eCCcCCcCccccCceeecccCCCceeccccccccCccccCCceEEe-CCcEEECCceeeecccchhhHHHHHHHHHHHHh
Confidence 999998531 13344444555 7789999994 7999999999999999998
Q ss_pred cCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEec
Q 018435 149 SGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDE 193 (356)
Q Consensus 149 ~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~ 193 (356)
.+. ++++|.+.|+++||.|. .|+....+ .+ +.+.++++|.
T Consensus 158 ~~~-~~~~v~~~~t~~EE~~~-gg~~~~~~--~~-~~~~~i~~D~ 197 (295)
T d1fnoa4 158 NPI-PHGDIKVAFTPDEEVGK-GAKHFDVE--AF-GAQWAYTVDG 197 (295)
T ss_dssp SSC-CCCCEEEEEESCGGGTC-TTTTCCHH--HH-CCSEEEECCC
T ss_pred cCC-CCCceecccccceecCc-chhhccHh--Hc-CCcEEEEecC
Confidence 875 46899999999999883 44443332 22 3567888874
|
| >d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase species: Aeromonas proteolytica [TaxId: 671]
Probab=99.72 E-value=1.1e-17 Score=151.27 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=120.3
Q ss_pred CCChhHHHHHHHhhhcccCCC-CCcChhHHHHHHHHHHHHCCCce-----EEEeec-CCCceEEEEecCCCCCCCcEEEE
Q 018435 24 AKSDDSIIERFRAYLQIDTSQ-PNPDYTNASKFILAQAEALSLES-----QTLEFA-KNKPLILLKWPGSNPQLPSILLN 96 (356)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s-~~~~e~~~~~~l~~~l~~~g~~~-----~~~~~~-~~~~nv~~~~~g~~~~~~~il~~ 96 (356)
+.+.+++.+.+++|.++.+.. .+....++++||.++|+++|..+ +.+... ...+||+++++|+.+..+.|++.
T Consensus 16 ~v~~~~i~~~l~~L~sf~~R~~~s~~~~~a~~wi~~~~~~~g~~~~~~~~~~~~~~~~~~~Nvi~~~~G~~~~~~~ivv~ 95 (291)
T d1rtqa_ 16 QVDASQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIG 95 (291)
T ss_dssp GCCHHHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEETTEEEEEEEEEECCSSEEEEEEEEE
T ss_pred hcCHHHHHHHHHHHhCcCCCCCCChhHHHHHHHHHHHHHHhcCccCCceEEEecCCCCCcccEEEEecCCCCCCCEEEEE
Confidence 356788999999999887642 24566899999999999988643 222221 13569999999987655789999
Q ss_pred eecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHH
Q 018435 97 SHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (356)
Q Consensus 97 aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (356)
||+|+++... .++.-.++|+.|+++|++++|++++.|++.+.+++++|+|+++.+||.| +.|++++
T Consensus 96 aH~Ds~~~~~-------------~~~~~~~~Ga~D~~sGva~~le~ar~l~~~~~~~~~~i~f~~~~~EE~G-l~GS~~~ 161 (291)
T d1rtqa_ 96 GHLDSTIGSH-------------TNEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAEEVG-LRGSQDL 161 (291)
T ss_dssp EECCCCSSTT-------------CCTTCCCCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGT-SHHHHHH
T ss_pred eecCCCCCCC-------------cCCCCCCCCCccchhhHHHHHHHHHHHHHhhcCCcCceEEeccccchhh-ccCcHHH
Confidence 9999998653 2233345699999999999999999999998889999999999999999 4799999
Q ss_pred hcccccc--CCceEEEEec
Q 018435 177 ADSHVFN--SLNVGIVLDE 193 (356)
Q Consensus 177 ~~~~~~~--~~~~~~~~~~ 193 (356)
+++.... ++..++.+|.
T Consensus 162 ~~~~~~~~~~i~~~inlDm 180 (291)
T d1rtqa_ 162 ANQYKSEGKNVVSALQLDM 180 (291)
T ss_dssp HHHHHHTTCEEEEEEECSC
T ss_pred HHhhhhhcchhhhhhhhhh
Confidence 9874322 2333455553
|
| >d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Allantoate amidohydrolase AllC catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=6.3e-17 Score=144.51 Aligned_cols=126 Identities=19% Similarity=0.173 Sum_probs=105.2
Q ss_pred hHHHHHHHhhhcccCC--------CCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeec
Q 018435 28 DSIIERFRAYLQIDTS--------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHT 99 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~--------s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~ 99 (356)
+++.+.|.+|-+|... ..+..+.++++|+.+||+++|++++. |..+||+++++|++++.|.|++++|+
T Consensus 6 ~~l~~~l~~l~~~g~~~~gGvtR~~~s~~~~~a~~~l~~~~~~~Gl~v~~----D~~GNvig~~~G~~~~~~~v~iGSHl 81 (293)
T d1z2la1 6 QAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRF----DEVGNLYGRLNGTEYPQEVVLSGSHI 81 (293)
T ss_dssp HHHHHHHHHHHHTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHTTCEEEE----CTTSCEEEEECCSSEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCeeeccCCHHHHHHHHHHHHHHHHcCCEEEE----ecCCcEEEEEeccCCCCceeEeeeec
Confidence 4555666666665532 23457889999999999999999886 78889999999998777899999999
Q ss_pred ccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccC----ccccHHH
Q 018435 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGAEK 175 (356)
Q Consensus 100 Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~~~ 175 (356)
||||.+ |..|+..|+++.|++++.|++.+..++++|.++++.+||.. ++.|++.
T Consensus 82 DtV~~g----------------------G~~Dg~~Gv~a~le~~~~l~~~~~~~~~~i~vv~f~~EEg~rFg~~~~GS~~ 139 (293)
T d1z2la1 82 DTVVNG----------------------GNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKN 139 (293)
T ss_dssp CCCTTB----------------------CSSTTHHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSSCCSSSCSCHHHHH
T ss_pred ccCCCC----------------------CCCCCchhHHHHHHHHHHHHhcCCCCCCCceeeeeecccccccCcccccchh
Confidence 999865 78899999999999999999999899999999999999953 2348887
Q ss_pred Hhcc
Q 018435 176 FADS 179 (356)
Q Consensus 176 ~~~~ 179 (356)
+...
T Consensus 140 ~~G~ 143 (293)
T d1z2la1 140 IFGL 143 (293)
T ss_dssp HTTC
T ss_pred hcCC
Confidence 7754
|
| >d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Succinyl-diaminopimelate desuccinylase species: Neisseria meningitidis [TaxId: 487]
Probab=99.65 E-value=6.6e-16 Score=119.66 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=82.1
Q ss_pred eeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCcccccc
Q 018435 210 CPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQ 288 (356)
Q Consensus 210 G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvi 288 (356)
|.++++|+++|+++|+++|+.+ ||+.++++++..+.++.... .......++++++.+++|.. +.|+|
T Consensus 1 Gsl~~~i~i~Gk~gHaa~P~~g~NpI~~~~~~i~~l~~~~~~~-------~~~~~~~~~~~~t~i~~G~~-----~~NvI 68 (113)
T d1vgya2 1 GSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDE-------GNEYFPPTSFQISNINGGTG-----ATNVI 68 (113)
T ss_dssp EEEEEEEEEECBCEETTCGGGCBCHHHHHHHHHHHHHHCCCCC-------CCSSCCCCEEEEEEEEECCS-----CTTEE
T ss_pred CceEEEEEEEEEeecccCcccCCCcHHHHHHHHHHHHhhhccc-------CcccCCCcEEEEEEEEeccc-----ccccC
Confidence 6788999999999999999999 99999999999887653210 01123457899999998841 67999
Q ss_pred CCeEEEEEEEecCCCCCHHHHHHHHHHHhcc
Q 018435 289 PSEAEAGFDIRVPPTTDAESLERRIVEEWAP 319 (356)
Q Consensus 289 p~~~~~~~diR~~~~~~~~~~~~~i~~~~~~ 319 (356)
|++|++.+|+|+.|.+..++++++|++++..
T Consensus 69 P~~a~~~~~iR~~~~~~~~~i~~~i~~i~~~ 99 (113)
T d1vgya2 69 PGELNVKFNFRFSTESTEAGLKQRVHAILDK 99 (113)
T ss_dssp CSEEEEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987753
|
| >d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Peptidase-like beta-alanine synthase, catalytic domain species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.63 E-value=1.6e-15 Score=136.11 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=119.8
Q ss_pred CCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeE
Q 018435 45 PNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNI 124 (356)
Q Consensus 45 ~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~ 124 (356)
.+..+.++.+|+.+||+++|++++. |..+|++++++|+++. ++|++++|+||||.+
T Consensus 49 ~S~~d~~ar~~l~~~~~~~Gl~v~~----D~~GNv~g~~~G~~~~-~~v~~GSHlDTVp~G------------------- 104 (322)
T d1r3na1 49 GTALDGAMRDWFTNECESLGCKVKV----DKIGNMFAVYPGKNGG-KPTATGSHLDTQPEA------------------- 104 (322)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCEEEE----BTTSCEEEEECCSSCS-SCEEEEECCCCCSSB-------------------
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEE----eCCCcEEEEecCCCCC-CceEecCccccCCcC-------------------
Confidence 3567899999999999999999886 8889999999998765 669999999999875
Q ss_pred EecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCc----cccHHHHhcccc------cc---C-------
Q 018435 125 FARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----HDGAEKFADSHV------FN---S------- 184 (356)
Q Consensus 125 ~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----~~G~~~~~~~~~------~~---~------- 184 (356)
|.+|+..|+++.|++++.|+++++.++++|.++++.+||.+. +.|++.+...-. +. +
T Consensus 105 ---G~~DG~lGV~a~Levl~~l~e~~~~~~~~i~vv~f~~EEg~rFg~~~lGS~~~~G~l~~~~~~~l~~~~d~~G~~l~ 181 (322)
T d1r3na1 105 ---GKYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNEEGARFARSCTGSSVWSHDLSLEEAYGLMSVGEDKPESVY 181 (322)
T ss_dssp ---CSSTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSCSSCSSBSSTTHHHHHHTTSSCHHHHHTCBBSSCSSCCBHH
T ss_pred ---CCcCCccchHHHHHHHHHHhhhccCCCCCcEEEEeeccccccccccccccccccCCCCHHHHhhhhccccchhhhHH
Confidence 688999999999999999999999999999999999999753 236766553200 00 0
Q ss_pred --------------------CceEEEEec--Ccc--CcCCcceeEEeeeeeEEEEEEEEecCCccCC
Q 018435 185 --------------------LNVGIVLDE--GLA--STTEDYRAFYAERCPWWLVIKARGAPGHGAK 227 (356)
Q Consensus 185 --------------------~~~~~~~~~--g~~--~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~ 227 (356)
+...+-++- |.. ....++.|+++..|..+++|++.|.+.|+..
T Consensus 182 ~al~~~G~~~~~~~~~~~~~i~a~lElHIEQGpvLe~~~~~IGVVtgI~G~~~~~v~~~g~a~~~~~ 248 (322)
T d1r3na1 182 DSLKNIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTGVQAVNFHEVCIECVSRSAFA 248 (322)
T ss_dssp HHHHHTTCCCSBCCSTTTSCCSEEEEEEECSSSHHHHTTCSEEEEEEECCEECCHHHHHHHHHHHHT
T ss_pred HHHHhcCccccccccccccceeEEEEEEEcCChhHHHCCCCeeccccccceeEEEeeccccccchhh
Confidence 011111111 100 0123578899999999999999998877654
|
| >d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Carboxypeptidase G2 species: Pseudomonas sp., strain rs-16 [TaxId: 306]
Probab=99.62 E-value=1.5e-15 Score=117.76 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=89.3
Q ss_pred eeEEEEEEEEecCCcc-CCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccc
Q 018435 210 CPWWLVIKARGAPGHG-AKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNL 287 (356)
Q Consensus 210 G~~~~~v~~~G~~~Hs-~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nv 287 (356)
|..+++|+++|+++|| +.|+.+ ||+..+++++..+.++... ....+++++.+.+|. +.|+
T Consensus 2 G~~~~~v~~~Gk~~Hag~~P~~g~nAi~~a~~~i~~l~~~~~~------------~~~~~~~~~~~~gG~------~~Nv 63 (113)
T d1cg2a2 2 GIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDK------------AKNLRFNWTIAKAGN------VSNI 63 (113)
T ss_dssp EEEEEEEEEECBCEETTSCGGGSBCHHHHHHHHHHHHGGGCBT------------TTTEEEEEEEEEECS------STTE
T ss_pred CeEEEEEEEEeECccccCCccccCcchHHHHHHHHHHHhhhcc------------CCCcEEEEEEeeccc------cCcE
Confidence 7899999999999998 579999 9999999999999876432 233788999999998 9999
Q ss_pred cCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEEee
Q 018435 288 QPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVVIN 331 (356)
Q Consensus 288 ip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~ 331 (356)
||++|++++|+|..+.++.+++.++|++.+.. ...++++++...
T Consensus 64 IP~~~~~~~diR~~~~e~~~~v~~~i~~~~~~~~~~~~~~ev~~~ 108 (113)
T d1cg2a2 64 IPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEADVKVIVT 108 (113)
T ss_dssp ECSEEEEEEEEEESSHHHHHHHHHHHHHHHTSCSSTTCEEEEEEE
T ss_pred eCCEEEEEEEEecCCHHHHHHHHHHHHHHHHhhccCCCEEEEEEE
Confidence 99999999999999999999999999987762 345777777653
|
| >d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Protein YxeP species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=5.7e-16 Score=120.45 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=77.4
Q ss_pred EEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCC
Q 018435 212 WWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPS 290 (356)
Q Consensus 212 ~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~ 290 (356)
.+|+|+++|+++|++.|+.| ||+.++++++..++++.....+ .....+++++.+++|. +.|+||+
T Consensus 3 d~f~v~v~Gk~aHaa~P~~g~nai~~a~~~i~~l~~~~~~~~~--------~~~~~~~~~~~i~~G~------~~NvIP~ 68 (115)
T d1ysja2 3 DRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVSRNIS--------SLQNAVVSITRVQAGT------SWNVIPD 68 (115)
T ss_dssp EEEEEEEECC--------CCCCHHHHHHHHHHHHC-------------------CCEEEEEEEEECS------CSSSCCS
T ss_pred eEEEEEEEEecccccCcccCcCHHHHHHHHHHHhcccchhccc--------ccccccceeeEEecCc------cccccCc
Confidence 46999999999999999999 9999999999999776432111 1234789999999998 9999999
Q ss_pred eEEEEEEEecCCCCCHHHHHHHHHHHhc--cCCCCceEEEEe
Q 018435 291 EAEAGFDIRVPPTTDAESLERRIVEEWA--PASRNMTFEVVI 330 (356)
Q Consensus 291 ~~~~~~diR~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~ 330 (356)
+|++.+|+|+.+.++.+.+.++|++.+. +..+++++++..
T Consensus 69 ~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~ei~~ 110 (115)
T d1ysja2 69 QAEMEGTVRTFQKEARQAVPEHMRRVAEGIAAGYGAQAEFKW 110 (115)
T ss_dssp EEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999999999999999999999997776 256788888765
|
| >d1xmba2 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: IAA-amino acid hydrolase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.57 E-value=1.5e-15 Score=118.74 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=57.0
Q ss_pred eeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCcccccc
Q 018435 210 CPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQ 288 (356)
Q Consensus 210 G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvi 288 (356)
|..+|+|+++|+++|++.|+.| ||+.+++++++.|+++..... ......+++++.+++|+ +.|+|
T Consensus 2 g~~~f~I~v~Gk~~Has~P~~g~nai~~~~~~i~~l~~~~~~~~--------~~~~~~~~~~g~i~gG~------a~NvI 67 (119)
T d1xmba2 2 GAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRET--------DPLDSKVVTVSKVNGGN------AFNVI 67 (119)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTTCBCCS--------SGGGCEEEEEEEEC--------------
T ss_pred CceEEEEEEEeecccccCcccCCCHHHHHHHHHHhhhhcccccc--------CcccccceeEEEcccCc------cceec
Confidence 6778999999999999999999 999999999999987643211 11234688999999998 99999
Q ss_pred CCeEEEEEEEecCCCCCHHHHHHHHHHHhc--cCCCCceEEEEe
Q 018435 289 PSEAEAGFDIRVPPTTDAESLERRIVEEWA--PASRNMTFEVVI 330 (356)
Q Consensus 289 p~~~~~~~diR~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~ 330 (356)
|++|++++++|..+.+ +++.++|++++. +..+++++++..
T Consensus 68 P~~a~~~~~iR~~~~~--~~i~~~i~~~~~~~a~~~g~~~~v~~ 109 (119)
T d1xmba2 68 PDSITIGGTLRAFTGF--TQLQQRVKEVITKQAAVHRCNASVNL 109 (119)
T ss_dssp CCEEEEEEEEEESSCH--HHHHHHHHHHHHHHHHHTTEEEEEES
T ss_pred CCeEEEEEEEecCChH--HHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 9999999999987643 457777776554 256788888765
|
| >d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: FolH catalytic domain-like domain: Glutamate carboxypeptidase II FOLH1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=7.3e-15 Score=133.43 Aligned_cols=130 Identities=19% Similarity=0.228 Sum_probs=107.2
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecC------CCceEEEEecCCCCCCCcEEEEeec
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK------NKPLILLKWPGSNPQLPSILLNSHT 99 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~------~~~nv~~~~~g~~~~~~~il~~aH~ 99 (356)
..+.+.+.|+.+.++|....+....++++||.+.++++|++.......+ ...||+++++|+....+.|++.||+
T Consensus 10 ~~~~~~~~l~~~~~~p~~~gs~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~Nvi~~i~G~~~~~~~ii~~aH~ 89 (304)
T d3bi1a3 10 KAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLEVTRIYNVIGTLRGAVEPDRYVILGGHR 89 (304)
T ss_dssp CHHHHHHHHHHHSSSCCCTTSHHHHHHHHHHHHHHHHHTCSEEEEEEEEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHhCCcceeeeeeecccCcceeEEEEEEEECCCCCCcEEEEEecc
Confidence 4578899999999999986666678999999999999999765433221 2349999999976434689999999
Q ss_pred ccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHH---HcCCCCcccEEEEEeeccccCccccHHHH
Q 018435 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLK---ASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (356)
Q Consensus 100 Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~---~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (356)
|++.. |+.|+.+|++++|++++.|. +.+.+|+++|+|+++.+||.| +.|++++
T Consensus 90 Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~~~~p~~ti~f~~~~~EE~g-l~Gs~~~ 145 (304)
T d3bi1a3 90 DSWVF-----------------------GGIDPQSGAAVVHEIVRSFGTLKKEGWRPRRTILFASWDAEEFG-LLGSTEW 145 (304)
T ss_dssp CCSSC-----------------------CTTTTHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESSGGGT-SHHHHHH
T ss_pred ccccC-----------------------CCCCCcchhHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCcccc-ccchHHH
Confidence 99742 78899999999999999764 567789999999999999999 4799999
Q ss_pred hcc
Q 018435 177 ADS 179 (356)
Q Consensus 177 ~~~ 179 (356)
+++
T Consensus 146 ~~~ 148 (304)
T d3bi1a3 146 AEE 148 (304)
T ss_dssp HHH
T ss_pred HHh
Confidence 975
|
| >d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: FolH catalytic domain-like domain: Transferrin receptor ectodomain, protease-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.9e-13 Score=123.12 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=98.3
Q ss_pred HHHHHHhhhcc---cCCCCCcChhHHHHHHHHHHHHCCCceEEEeec----CCCceEEEEecCCCCCCCcEEEEeecccC
Q 018435 30 IIERFRAYLQI---DTSQPNPDYTNASKFILAQAEALSLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (356)
Q Consensus 30 ~~~~l~~l~~i---~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~----~~~~nv~~~~~g~~~~~~~il~~aH~Dtv 102 (356)
+.+.++.|.+. |....+.+.+++++||.++++++|+.....+.. ....||+++++|+....+.|+++||+|++
T Consensus 19 ~~~~i~~l~~~~~~~R~~gs~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~Nvig~i~G~~~~~~~ivigaH~Ds~ 98 (294)
T d1de4c3 19 FTSTIKLLNENSYVPREAGSQKDENLALYVENQFREFKLSKVWRDQHFVKEIKILNIFGVIKGFVEPDHYVVVGAQRDAW 98 (294)
T ss_dssp HHHHHHHTTSTTTSSCCTTSHHHHHHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEEEECCSSEEEEEEEEEEECCCS
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccccccccccCCccceEEEEEeCCCCCCceEEEEeecccc
Confidence 44455555432 233345677899999999999999875433221 13469999999975434689999999997
Q ss_pred CCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHH----cCCCCcccEEEEEeeccccCccccHHHHhc
Q 018435 103 PSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKA----SGFQPVRSVYLSFVPDEEIGGHDGAEKFAD 178 (356)
Q Consensus 103 p~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~----~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~ 178 (356)
. .|+.|+.+|++++|++++.|++ .+.+|+++|+|+++.+||.| +.|++++++
T Consensus 99 ~-----------------------~GA~DnasG~a~llelar~l~~~~~~~g~~P~rtI~f~~~~~EE~G-l~GS~~~~~ 154 (294)
T d1de4c3 99 G-----------------------PGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFG-SVGATEWLE 154 (294)
T ss_dssp S-----------------------CCTTTTHHHHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEECCCTTT-SHHHHHHHH
T ss_pred c-----------------------ccccCCchhHHHHHHHHHHHHhhhhhcCCCCCceEEEEEecCcccc-ccCHHHHHH
Confidence 3 1899999999999999999865 46789999999999999999 579999997
Q ss_pred cc
Q 018435 179 SH 180 (356)
Q Consensus 179 ~~ 180 (356)
+.
T Consensus 155 ~~ 156 (294)
T d1de4c3 155 GY 156 (294)
T ss_dssp HS
T ss_pred hC
Confidence 63
|
| >d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Allantoate amidohydrolase AllC species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=1.2e-13 Score=107.33 Aligned_cols=105 Identities=7% Similarity=0.058 Sum_probs=80.8
Q ss_pred eeEEEEEEEEecCCcc-CCCC-CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCcccc
Q 018435 210 CPWWLVIKARGAPGHG-AKLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMN 286 (356)
Q Consensus 210 G~~~~~v~~~G~~~Hs-~~p~-~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~n 286 (356)
|..|++|+++|+++|+ +.|+ .+ ||+.+++.++..+.++.... .............+|. +.|
T Consensus 2 G~~~~~v~~~G~~aHAGs~P~~~~~~al~aaa~~~~~l~~~~~~~----------~~~~~~~~~~~~~g~~------~~N 65 (117)
T d1z2la2 2 GQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRM----------GDPLVLTFGKVEPRPN------TVN 65 (117)
T ss_dssp EEEEEEEEEECCCEETTTSCGGGCCCHHHHHHHHHHHHHHHHHHH----------CTTCEEECCCEEEESC------CTT
T ss_pred CceEEEEEEEEECCCCCCCcccccccHHHHHHHHHHHHHHHHHhc----------cCCccceEEEEEecCC------ccc
Confidence 7889999999999998 5784 55 99999999998887653320 1122333344445555 899
Q ss_pred ccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc--cCCCCceEEEEe
Q 018435 287 LQPSEAEAGFDIRVPPTTDAESLERRIVEEWA--PASRNMTFEVVI 330 (356)
Q Consensus 287 vip~~~~~~~diR~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~ 330 (356)
+||++|++.+|+|..+.+..+++.+++++.+. +..++++++++.
T Consensus 66 vIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~~ie~ 111 (117)
T d1z2la2 66 VVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDL 111 (117)
T ss_dssp EECCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred eeCCeEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 99999999999999999999999999997775 255777776654
|
| >d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Glutaminyl-peptide cyclotransferase-like domain: Glutaminyl-peptide cyclotransferase, QPCT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.1e-13 Score=124.08 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=92.6
Q ss_pred cCCCCCcChhHHHHHHHHHHHHCCCceEE--EeecC-------CCceEEEEecCCCCCCCcEEEEeecccCCCCCCCCCC
Q 018435 41 DTSQPNPDYTNASKFILAQAEALSLESQT--LEFAK-------NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSH 111 (356)
Q Consensus 41 ~s~s~~~~e~~~~~~l~~~l~~~g~~~~~--~~~~~-------~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~~ 111 (356)
|-...+.+..++++||.+.|+++|.++.. ..... ...||+++++|+. .+.|++.||+|+++... +..
T Consensus 44 pR~~Gs~g~~~a~~~i~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~Nvia~l~g~~--~~~ili~aHyDs~~~~~--~~~ 119 (329)
T d2afwa1 44 ERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSFSNIISTLNPTA--KRHLVLACHYDSKYFSH--WNN 119 (329)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHTSSSCCEEEEEEEEECCTTSSEEEEEEEEESSTTS--SEEEEEEEECCCCCCCC--BTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEEeccccCCceeEEEEEEeCCCC--CceEEEEeeeccCCccc--ccc
Confidence 44434667889999999999999875443 22211 2459999999864 36899999999998753 111
Q ss_pred CCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHc--------CCCCcccEEEEEeeccccCc-------cccHHHH
Q 018435 112 HPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS--------GFQPVRSVYLSFVPDEEIGG-------HDGAEKF 176 (356)
Q Consensus 112 ~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~--------~~~~~~~i~~~~~~~EE~g~-------~~G~~~~ 176 (356)
.++ +|+.||.+|+|++|++++.|.+. +.+++++|+|+|+.+||.|. +.|++++
T Consensus 120 ~~~------------pGA~DnaSGvA~lLElAR~l~~~~~~~~~~~~~~p~~tI~fv~f~gEE~G~~~~~~~~l~GS~~~ 187 (329)
T d2afwa1 120 RVF------------VGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHL 187 (329)
T ss_dssp BCC------------CCTTTTHHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEEESCCSCSSSCCSSSSCHHHHHH
T ss_pred cCC------------CCCCCccHHHHHHHHHHHHHHHhhhhhhhcccCCCCceEEEEEecccccccccccccccccHHHH
Confidence 111 39999999999999999999763 45678999999999999882 4699999
Q ss_pred hcc
Q 018435 177 ADS 179 (356)
Q Consensus 177 ~~~ 179 (356)
+++
T Consensus 188 a~~ 190 (329)
T d2afwa1 188 AAK 190 (329)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >d1r3na2 d.58.19.1 (A:248-363) Peptidase-like beta-alanine synthase {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Peptidase-like beta-alanine synthase species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.37 E-value=1.3e-12 Score=101.27 Aligned_cols=102 Identities=15% Similarity=0.230 Sum_probs=74.8
Q ss_pred eEEEEEEEEecCCcc-CCC-CCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccc
Q 018435 211 PWWLVIKARGAPGHG-AKL-YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNL 287 (356)
Q Consensus 211 ~~~~~v~~~G~~~Hs-~~p-~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nv 287 (356)
..||+|+++|+++|| +.| +.+ |++.+++.++..+.++... ... +.+++.+..|. .+.|+
T Consensus 2 ~~W~~v~v~G~~aHAGs~P~~~~~da~~aa~~~i~~l~~~~~~-----------~~~--~~tv~~~~~g~-----~~~Nv 63 (116)
T d1r3na2 2 YNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQR-----------HNG--LFTCGIIDAKP-----YSVNI 63 (116)
T ss_dssp EEEEEEEEECCCEETTTSCGGGCCCHHHHHHHHHHHHHHHHHH-----------TTC--EEECCCEEEES-----CCTTE
T ss_pred ceEEEEEEEEECcccCCCcccccchHHHHHHHHHhhccccccc-----------CCc--eEEEEEEEecC-----cccce
Confidence 458999999999998 567 455 9999999999888765332 122 33344444321 17899
Q ss_pred cCCeEEEEEEEecCCCCCHHHHHHHHHHHhc---c--CCCCceEEEEe
Q 018435 288 QPSEAEAGFDIRVPPTTDAESLERRIVEEWA---P--ASRNMTFEVVI 330 (356)
Q Consensus 288 ip~~~~~~~diR~~~~~~~~~~~~~i~~~~~---~--~~~~~~~~~~~ 330 (356)
||++|++.+|+|..+.+..+++.++|++.+. + ...++++++..
T Consensus 64 IP~~a~~~~d~R~~~~~~~~~i~~~i~~~~~~~a~~~~~~~v~~e~e~ 111 (116)
T d1r3na2 64 IPGEVSFTLDFRHPSDDVLATMLKEAAAEFDRLIKINDGGALSYESET 111 (116)
T ss_dssp ECSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHTTCCTTCCCEEEEEE
T ss_pred eCCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCccEEEEEEE
Confidence 9999999999999999999999999986554 1 23556665543
|
| >d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Aminopeptidase PepV species: Lactobacillus delbrueckii [TaxId: 1584]
Probab=99.20 E-value=1.8e-11 Score=103.60 Aligned_cols=107 Identities=10% Similarity=0.014 Sum_probs=80.9
Q ss_pred EeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhh--HHHHHhc--ccccC-------CceeeeEeee
Q 018435 206 YAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQ--FDLVKAG--LKAEG-------EVVSVNMAFL 273 (356)
Q Consensus 206 ~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~--~~~~~~~--~~~~~-------~~~~v~~~~i 273 (356)
..+++..+++|+++|+++|++.|+.| ||+..+++++..+....... ...+... ....+ ...+++.+.+
T Consensus 65 ~~~~~~~~~~i~~~Gk~aHss~P~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~t~ 144 (196)
T d1lfwa2 65 SFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHEDFYGKKLGIFHHDDLMGDLAS 144 (196)
T ss_dssp EEEEETTEEEEEEECBCCBTTCGGGSBCHHHHHHHHHTTSCBCHHHHHHHHHHHHTTTTCTTSTTTTCCCEETTTEECEE
T ss_pred EEEEecceEEEEEEEEECCccCcccCcCHHHHHHHHHHHhhhccchhhhhhhhhhhhcccccccccCCcccCceecCeEE
Confidence 34566678999999999999999999 99999999998876543211 1111110 00001 1234567788
Q ss_pred ecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 274 KAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 274 ~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
.+|. ..|++|++|++.+|+|+++..+.+++.++|++.+.
T Consensus 145 ~~G~------~~n~~p~~~~~~~diR~p~~~~~e~i~~~i~~~~~ 183 (196)
T d1lfwa2 145 SPSM------FDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFS 183 (196)
T ss_dssp EEEE------EEEETTSCEEEEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred eeee------EeeccCCeEEEEEEEccCCCCCHHHHHHHHHHHhc
Confidence 8887 88999999999999999999999999999998786
|
| >d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Frv operon protein FrvX, catalytic domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.83 E-value=1.1e-06 Score=76.30 Aligned_cols=64 Identities=9% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHhhhcccCCCCCcChh-HHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC
Q 018435 30 IIERFRAYLQIDTSQPNPDYT-NASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (356)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~-~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv 102 (356)
-.++|++|++.|++ ++.|. .+++++.+.++.++.+++. |..+|+++..+|+ +|+|++.||||.|
T Consensus 191 ~~~~l~~l~~~~~~--sg~E~~~v~~~~~~~~~~~~d~~~~----D~~Gn~~~~~~~~---~~~i~~~aH~Dei 255 (255)
T d1y0ya2 191 DYELLKKVVEAPGV--SGYEFLGIRDVVIEEIKDYVDEVKV----DKLGNVIAHKKGE---GPKVMIAAHMDQI 255 (255)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCC--CCCccHHHHHHHHHHHHhhCCeEEE----CCCCCEEEEEcCC---CCEEEEEeccccC
Confidence 45789999999996 67884 6899999999999877765 7899999998764 4799999999986
|
| >d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Frv operon protein FrvX, catalytic domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.41 E-value=7.1e-05 Score=64.57 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=51.2
Q ss_pred CCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEec
Q 018435 120 SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDE 193 (356)
Q Consensus 120 ~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~ 193 (356)
.++++.|| +.||+.|++++|++++.+++ ++.+++++|+..||.|. +|++..... + ..++++++|.
T Consensus 9 ~~~~i~s~-alDdr~g~~~lle~l~~lk~----~~~~l~~vft~qEEvG~-rGA~~~a~~--i-~p~~~i~~d~ 73 (255)
T d1y0ya2 9 GKHRFVSI-AFDDRIAVYTILEVAKQLKD----AKADVYFVATVQEEVGL-RGARTSAFG--I-EPDYGFAIDV 73 (255)
T ss_dssp TTTEEEET-THHHHHHHHHHHHHHHHCCS----CSSEEEEEEESCCTTTS-HHHHHHHHH--H-CCSEEEEEEE
T ss_pred cCCeEecc-cchhHHHHHHHHHHHHHhhc----cCCcEEEEEEcccccCC-Ccchhhhhh--h-cccccceeee
Confidence 67899999 58999999999999998853 35789999999999996 799876653 2 2345666654
|
| >d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Probable aminopeptidase ApeA species: Borrelia burgdorferi [TaxId: 139]
Probab=96.15 E-value=0.0025 Score=56.18 Aligned_cols=132 Identities=21% Similarity=0.201 Sum_probs=79.6
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCce----EEEeec------CCCceEEEEecCCCC-CCCcEEE
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLES----QTLEFA------KNKPLILLKWPGSNP-QLPSILL 95 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~----~~~~~~------~~~~nv~~~~~g~~~-~~~~il~ 95 (356)
.+++.+..++++++=.. ++.+..+.+++.++|++.||.- +.++.. .....+++..-|+.+ ....-++
T Consensus 12 ~~~~~~~a~~~~~Fl~~--~~T~~hav~~~~~~L~~~GF~~l~e~~~~~~g~k~y~~~~~~sliaf~iG~~~~~~G~~ii 89 (322)
T d1y7ea2 12 KNQILNFSESYKKFISK--FKTEREVTAYALDKAKKLGFINAEEKKNLMPGDKIFYTCREKSVAFAIIGKNPIEDGMNFI 89 (322)
T ss_dssp HHHHHHHHHHHHHHHHH--CCSHHHHHHHHHHHHHTTTCEESTTCCCCCTTCEEECBCSSSCBCCEECCSSCGGGCCEEC
T ss_pred HHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCcCeECCCCCcccCCCeEEEEeCCCEEEEEEeCCCCccCCeEEE
Confidence 35667777777766654 4467899999999999999842 111100 112346655556554 2234578
Q ss_pred EeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCc
Q 018435 96 NSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG 169 (356)
Q Consensus 96 ~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~ 169 (356)
.+|.|.--... .+|...-. ++..|.+.| .||..++.+.|.|+. +....+....+++++..||.|+
T Consensus 90 gaHtDSPr~~a----~~~~~~G~-d~efi~s~r-lDd~~~~~~~l~Ali---~~~~~~~~~~v~~~~D~EEIGS 154 (322)
T d1y7ea2 90 VSHTDSPRVPA----GTAKDVGF-DKALIGAYG-QDDKICVFTSLESIF---DLEETPNKTAICFLVDKEEIGS 154 (322)
T ss_dssp CCBCCCCBEEC----SCCEEETT-TTCEEEESS-HHHHHHHHHHHHHHS---SSSCCCSSCEECCCBCSTTC--
T ss_pred EEecCCCchhh----cccccccc-ccceeeccC-CccHHHHHHHHHHHH---hhhcCCCceEEEEEecccccCC
Confidence 99999743211 11221222 556666665 599998888877763 3222345566777888999986
|
| >d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Peptidase T (tripeptidase) species: Salmonella typhimurium [TaxId: 90371]
Probab=96.04 E-value=0.03 Score=40.87 Aligned_cols=87 Identities=21% Similarity=0.086 Sum_probs=60.1
Q ss_pred EEEEEEEEecCCccCCCCCC--CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccC
Q 018435 212 WWLVIKARGAPGHGAKLYDN--SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQP 289 (356)
Q Consensus 212 ~~~~v~~~G~~~Hs~~p~~g--nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip 289 (356)
...+|+++|.+.|.|...+- ||+..++++++.+..-..++. ..+-.-=+.+..+.|+ -
T Consensus 4 a~a~i~i~G~svHPG~AKgkMvNA~~~A~ef~~~LP~~e~PE~--------Teg~EGF~hl~~~~G~------------v 63 (113)
T d1fnoa3 4 ASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADEAPET--------TEGYEGFYHLASMKGT------------V 63 (113)
T ss_dssp EEEEEEEECBCCCGGGCTTTCBCHHHHHHHHHHTSCTTSSGGG--------CCTTCCEEEEEEEEEC------------S
T ss_pred ceEEEEEEEEEeCCcchhhHHHhHHHHHHHHHHhCCCCCCCCc--------cCCccceEEEeeeeec------------h
Confidence 35789999999999876554 999999999988865433211 1111123445556654 4
Q ss_pred CeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 290 SEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 290 ~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
+++++.+-||-.+....+.-.+.|++++.
T Consensus 64 e~a~l~yIIRDfd~~~f~~rk~~l~~~~~ 92 (113)
T d1fnoa3 64 DRAEMHYIIRDFDRKQFEARKRKMMEIAK 92 (113)
T ss_dssp SEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHEEEEEEEeeCCHHHHHHHHHHHHHHHH
Confidence 89999999999887766666666665443
|
| >d1lama1 c.56.5.3 (A:160-484) Leucine aminopeptidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Leucine aminopeptidase, C-terminal domain domain: Leucine aminopeptidase, C-terminal domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.73 E-value=6.1 Score=33.69 Aligned_cols=123 Identities=11% Similarity=-0.006 Sum_probs=69.1
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeec------CCCceEE--------------EEecCCC-
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA------KNKPLIL--------------LKWPGSN- 87 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~------~~~~nv~--------------~~~~g~~- 87 (356)
+-+.+.|+|++.|.. --.-...++++++.+++.+++++..... -+.+.++ .++++..
T Consensus 3 ~g~~~aRdL~n~P~N--~ltP~~~a~~~~~~~~~~~~~v~v~~~~~~~l~~~gmg~~laVg~GS~~~p~li~l~y~~~~~ 80 (325)
T d1lama1 3 SGQNLARRLMETPAN--EMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPN 80 (325)
T ss_dssp HHHHHHHHHHHSCTT--TSCHHHHHHHHHHHHHHHCSSEEEEEECHHHHHHTTCHHHHHHHTTSSSCCEEEEEEEECSSS
T ss_pred hHHHHHHHHcCCChh--hcCHHHHHHHHHHHHHhcCCeEEEEECcHHHHHhCCCCcEEEeeccCCCCCcceEEeecccCC
Confidence 446788999998884 2345788999999999998877653211 1222222 3333221
Q ss_pred CCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccc
Q 018435 88 PQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166 (356)
Q Consensus 88 ~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 166 (356)
+..++|+|.|===|...++ -.-.|-.. +. +.-.|++|.|+.+.+++.+.+.+. +.+|..+....|-
T Consensus 81 ~~~~~i~lVGKGVtFDtGG--~~lK~~~~-------m~--~Mk~Dm~GaA~v~g~~~~~~~~~~--~~~v~~i~~~~EN 146 (325)
T d1lama1 81 ASEPPLVFVGKGITFDSGG--ISIKAAAN-------MD--LMRADMGGAATICSAIVSAAKLDL--PINIVGLAPLCEN 146 (325)
T ss_dssp TTSCCEEEEECEEEEECCT--TSCCCSTT-------GG--GGGGTTHHHHHHHHHHHHHHHTTC--SSEEEEEEEEEEE
T ss_pred cccccEEEecceeEeeccc--cccccchh-------hh--hhcccccchhHHHHHHHHHHHhcC--CceEEEEEEeeec
Confidence 1223344443211111111 01111110 00 123346888999999999998864 5788888887764
|
| >d1gyta2 c.56.5.3 (A:179-503) Leucine aminopeptidase, C-terminal domain {Escherichia coli, PepA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Leucine aminopeptidase, C-terminal domain domain: Leucine aminopeptidase, C-terminal domain species: Escherichia coli, PepA [TaxId: 562]
Probab=84.62 E-value=6.4 Score=33.50 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=71.6
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCce--EEEeec----CCCc--------------eEEEEecCCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLES--QTLEFA----KNKP--------------LILLKWPGSNP 88 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~--~~~~~~----~~~~--------------nv~~~~~g~~~ 88 (356)
+-+.+.|+|++.|.- --.-...++++++++++.|..+ +.++.. -+.+ -++.++.|.+.
T Consensus 4 ~gvn~aRdLvn~P~N--~ltP~~~a~~a~~l~~~~~~~v~v~V~~~~~l~~~Gm~~llaVg~GS~~~p~li~l~y~~~~~ 81 (325)
T d1gyta2 4 AGIKAAKDLGNMPPN--ICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNAS 81 (325)
T ss_dssp HHHHHHHHHHHSCTT--TCSHHHHHHHHHHHHHHTTTTEEEEEECHHHHHHTTCHHHHHHHHTSSSCCEEEEEEEECCCC
T ss_pred HHHHHHHHhhCCChh--hcCHHHHHHHHHHHHHHcCCCeEEEEecHHHHHhCCCCCeeEEeeccCCCCCceEEEecCccc
Confidence 457789999999984 2345788999999999887544 544421 0222 23344544332
Q ss_pred -CCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccc
Q 018435 89 -QLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166 (356)
Q Consensus 89 -~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 166 (356)
+.++|+|.|-==|...++ -.-.|...-. +.-.|++|.|+.+.+++.+.+.+. +.+|+.+....|-
T Consensus 82 ~~~~~i~lVGKGitFDTGG--~slKp~~~M~---------~Mk~DM~GAA~v~g~~~a~a~l~~--~~~v~~~~p~~EN 147 (325)
T d1gyta2 82 EDARPIVLVGKGLTFDSGG--ISIKPSEGMD---------EMKYDMCGAAAVYGVMRMVAELQL--PINVIGVLAGCEN 147 (325)
T ss_dssp TTCCCEEEEEEEEEEECCT--TSCCCSTTGG---------GGGGGGHHHHHHHHHHHHHHHHTC--SSEEEEEEEEEEE
T ss_pred CCCCCEEEEccceEEeccc--cccccccchh---------hhhhhcccchhHHHHHHHHHHhCc--CceEEEEEehhhc
Confidence 224455554322222111 1112221110 122336888999999999998864 5789988888875
|