Citrus Sinensis ID: 018453

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLMQHGSQFYLAYSS
Secondary Structure (PSIPRED)
cccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHcccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHccHHHHHHccccHHHHHHEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHEHHHHHHHHHHEcccccEEccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHcccccHHcHHHEEEEEcc
Coil and Loop (DISEMBL)
MATDPEQARARLSSfgkvgkssgeigsadeepliangirpspenysvsaAILPflfpalggllygydigstscatisiesptlsgiswydlsSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVtalapdfiIMVVGRFVFGIGIGLAMhaapmyiaetaptpmrgqliSLKEFFIVLGMVGGYGIGSLLVDLVAGWrymygastPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCrlrgqsigdsaptEVDEILTELSyvgedkevslrEVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLMQHGSQFYLAYSS
Flexible Loop (DISEMBL)
MATDPEQARARLssfgkvgkssgeigsadeeplIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRgqsigdsaptevDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLMQHGSQFYLAYSS
Low Complexity Region (SEG)
MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAIlpflfpalggllygyDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRElilaallylvgalvtalaPDfiimvvgrfvfgigigLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLMQHGSQFYLAYSS
Disordered region (IsUnstruct)
********************************************YSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLMQHGSQFYLA***
Disordered Region (DISOPRED)
************************************************AAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKG***DLRESAISCLCRLRGQSIGDSAP**********************EVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLMQHGSQFYLAYSS
Disordered Region (DISEMBL)
***********************EIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLMQHGSQFYLAYSS
Disordered Region (DISPRO)
******************************************ENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLMQHGSQFYLAYSS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLMQHGSQFYLAYSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
Q6AWX0	503	D-xylose-proton symporter	yes	no	0.940	0.664	0.715	1e-137
Q8L6Z8	503	D-xylose-proton symporter	no	no	0.938	0.662	0.665	1e-123
Q0WWW9	558	D-xylose-proton symporter	no	no	0.938	0.596	0.548	1e-99
Q9BE72	621	Solute carrier family 2,	N/A	no	0.726	0.415	0.333	1e-33
Q8TD20	617	Solute carrier family 2,	yes	no	0.726	0.418	0.333	2e-33
C0SPB2	457	Putative metabolite trans	yes	no	0.732	0.568	0.316	3e-32
Q96QE2	648	Proton myo-inositol cotra	no	no	0.749	0.410	0.334	7e-32
Q8BFW9	622	Solute carrier family 2,	yes	no	0.828	0.472	0.320	2e-31
Q5J316	621	Solute carrier family 2,	no	no	0.726	0.415	0.322	3e-31
O34718	473	Major myo-inositol transp	no	no	0.743	0.558	0.301	3e-31

>sp|Q6AWX0|XYLL2_ARATH D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1

 Score =  487 bits (1254), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/337 (71%), Positives = 287/337 (85%), Gaps = 3/337 (0%)

Query: 1   MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
           MA DPEQ +   S   + GKSSGEI S + EPLI       PENYSV AAILPFLFPALG
Sbjct: 1   MALDPEQQQPISSVSREFGKSSGEI-SPEREPLIKE--NHVPENYSVVAAILPFLFPALG 57

Query: 61  GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
           GLLYGY+IG+TSCATIS++SP+LSGISWY+LSSV++GL+TSGSLYGAL GSI+AF IAD+
Sbjct: 58  GLLYGYEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADV 117

Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
           +GRR+ELILAALLYLVGALVTALAP + ++++GR ++G+ +GLAMHAAPMYIAETAP+P+
Sbjct: 118 IGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPI 177

Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
           RGQL+SLKEFFIVLGMVGGYGIGSL V++ +GWRYMY  S PLAVIMG+GMWWLPASPRW
Sbjct: 178 RGQLVSLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRW 237

Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
           LLL  ++ KG++++ RE+AI  LC LRG +  DSA  +V+EIL EL++VGEDKEV+  E+
Sbjct: 238 LLLRVIQGKGNVENQREAAIKSLCCLRGPAFVDSAAEQVNEILAELTFVGEDKEVTFGEL 297

Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
           F GKCLKALIIG GLVLFQQITGQPSVLYYA SILQ 
Sbjct: 298 FQGKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQT 334

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L6Z8|XYLL1_ARATH D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1

 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/338 (66%), Positives = 273/338 (80%), Gaps = 5/338 (1%)

Query: 1   MATDPEQARARLSSFGKV-GKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPAL 59
           M  DPE     +SS G+V G SS    +A++EPL+      SPENYSV AAI PFLFPAL
Sbjct: 1   MGFDPENQS--ISSVGQVVGDSSSGGITAEKEPLLKE--NHSPENYSVLAAIPPFLFPAL 56

Query: 60  GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD 119
           G LL+GY+IG+TSCA +S++SPTLSGISWYDLSSV++G+ITSGSLYGALIGSI+AF++AD
Sbjct: 57  GALLFGYEIGATSCAIMSLKSPTLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVAD 116

Query: 120 ILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP 179
           I+GRR+ELILAA LYLVGA+VT +AP F I+++GR  +G+GIGL MHAAPMYIAETAP+ 
Sbjct: 117 IIGRRKELILAAFLYLVGAIVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQ 176

Query: 180 MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPR 239
           +RG++ISLKEF  VLGMVGGYGIGSL + +++GWRYMY    P  VIMG GM WLPASPR
Sbjct: 177 IRGRMISLKEFSTVLGMVGGYGIGSLWITVISGWRYMYATILPFPVIMGTGMCWLPASPR 236

Query: 240 WLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLRE 299
           WLLL A++ +G+ ++L+++AI  LCRLRG  I DSA  +V+EIL ELS VGEDKE +  E
Sbjct: 237 WLLLRALQGQGNGENLQQAAIRSLCRLRGSVIADSAAEQVNEILAELSLVGEDKEATFGE 296

Query: 300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
           +F GKCLKAL I  GLVLFQQITGQPSVLYYA SILQ 
Sbjct: 297 LFRGKCLKALTIAGGLVLFQQITGQPSVLYYAPSILQT 334

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WWW9|XYLL3_ARATH D-xylose-proton symporter-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g59250 PE=1 SV=2

 Score =  363 bits (931), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 187/341 (54%), Positives = 250/341 (73%), Gaps = 8/341 (2%)

Query: 1   MATDPEQARARLSSFGKVG-KSSGEIGSADEEPLIANGI-RPSPENYSVSAAILPFLFPA 58
             + P     R     +VG ++ GE   + E   +A+ +   +PE++S S+ ILPF+FPA
Sbjct: 50  FVSKPGLVTTRYRHIFQVGAETGGEFADSGE---VADSLASDAPESFSWSSVILPFIFPA 106

Query: 59  LGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIA 118
           LGGLL+GYDIG+TS AT+S++SP LSG +W++ S V++GL+ SGSLYGAL+GSI  + +A
Sbjct: 107 LGGLLFGYDIGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVA 166

Query: 119 DILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPT 178
           D LGRRRELI+AA+LYL+G+L+T  APD  I++VGR ++G GIGLAMH AP+YIAET P+
Sbjct: 167 DFLGRRRELIIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPS 226

Query: 179 PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP 238
            +RG LISLKE FIVLG++ G+ +GS  +D+V GWRYMYG  TP+A++MG+GMW LPASP
Sbjct: 227 QIRGTLISLKELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASP 286

Query: 239 RWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTE-VDEILTELSYVGEDKEV-- 295
           RWLLL A++ KG +Q+ +E A+  L +LRG+  GD    + VD+    +    ED++   
Sbjct: 287 RWLLLRAVQGKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGG 346

Query: 296 SLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ 336
           +  EVF G  LKAL IG GLVLFQQITGQPSVLYYA SILQ
Sbjct: 347 NFLEVFQGPNLKALTIGGGLVLFQQITGQPSVLYYAGSILQ 387

Arabidopsis thaliana (taxid: 3702)

>sp|Q9BE72|GTR12_MACFA Solute carrier family 2, facilitated glucose transporter member 12 OS=Macaca fascicularis GN=SLC2A12 PE=2 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 152/282 (53%), Gaps = 24/282 (8%)

Query: 58  ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNI 117
           A+ GLL GY++G  S A + I++          LS  E  ++ S  L GAL+ S+    +
Sbjct: 52  AVSGLLVGYELGIISGALLQIKT-------LLTLSCHEQEMVVSSLLIGALLASLTGGVL 104

Query: 118 ADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAP 177
            D  GRR  +IL++ L  +G+LV  L+  + +++VGR   G+ I L+  A  +YIAE AP
Sbjct: 105 IDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAP 164

Query: 178 TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS 237
              RG L+SL E  IV+G++  Y       ++  GW+YM+G   PL ++  + M++LP S
Sbjct: 165 QHRRGLLVSLNELMIVIGILSAYISNYAFANVFHGWKYMFGLVIPLGILQAIAMYFLPPS 224

Query: 238 PRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSL 297
           PR+L+         M+    +A   L RLR  S         +E+    S + ++ + S 
Sbjct: 225 PRFLV---------MKGQEGAASKVLGRLRALS------DATEELTVIKSSLKDEYQYSF 269

Query: 298 REVFHGK--CLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
            ++F  K      ++IG  LV F QITGQP++L+YA+++L+ 
Sbjct: 270 WDLFRSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKS 311

Facilitative glucose transporter.

Macaca fascicularis (taxid: 9541)

>sp|Q8TD20|GTR12_HUMAN Solute carrier family 2, facilitated glucose transporter member 12 OS=Homo sapiens GN=SLC2A12 PE=2 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 152/282 (53%), Gaps = 24/282 (8%)

Query: 58  ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNI 117
           A+ GLL GY++G  S A + I++          LS  E  ++ S  + GAL+ S+    +
Sbjct: 48  AVSGLLVGYELGIISGALLQIKT-------LLALSCHEQEMVVSSLVIGALLASLTGGVL 100

Query: 118 ADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAP 177
            D  GRR  +IL++ L  +G+LV  L+  + +++VGR   G+ I L+  A  +YIAE AP
Sbjct: 101 IDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAP 160

Query: 178 TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS 237
              RG L+SL E  IV+G++  Y       ++  GW+YM+G   PL V+  + M++LP S
Sbjct: 161 QHRRGLLVSLNELMIVIGILSAYISNYAFANVFHGWKYMFGLVIPLGVLQAIAMYFLPPS 220

Query: 238 PRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSL 297
           PR+L+         M+    +A   L RLR  S         +E+    S + ++ + S 
Sbjct: 221 PRFLV---------MKGQEGAASKVLGRLRALS------DTTEELTVIKSSLKDEYQYSF 265

Query: 298 REVFHGK--CLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
            ++F  K      ++IG  LV F QITGQP++L+YA+++L+ 
Sbjct: 266 WDLFRSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKS 307

Facilitative glucose transporter.

Homo sapiens (taxid: 9606)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 147/284 (51%), Gaps = 24/284 (8%)

Query: 54  FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSIL 113
           + F ALGG LYGYD G  S A + ++           L++   GL+ S  L GA++GS  
Sbjct: 10  YFFGALGGALYGYDTGVISGAILFMKKE-------LGLNAFTEGLVVSSLLVGAILGSGA 62

Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIA 173
           A  + D  GR++ ++ AALL+ +G L  ALAP+  +MV+ R + G+ +G +    P+Y++
Sbjct: 63  AGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLS 122

Query: 174 ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233
           E AP   RG L SL +  I +G++  Y +  +  D  A WR+M G +   ++++ +G+ +
Sbjct: 123 ELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADAEA-WRWMLGLAAVPSLLLLIGILF 181

Query: 234 LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 293
           +P SPRWL     + K         A   L +LRG         ++D+ + ++    +  
Sbjct: 182 MPESPRWLFTNGEESK---------AKKILEKLRGTK-------DIDQEIHDIKEAEKQD 225

Query: 294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
           E  L+E+F      ALI G GL   QQ  G  +++YYA     +
Sbjct: 226 EGGLKELFDPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTN 269

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q96QE2|MYCT_HUMAN Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=3

 Score =  138 bits (347), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 150/284 (52%), Gaps = 18/284 (6%)

Query: 55  LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILA 114
           +F ALGG L+GYD G  S A + ++        W +L       + S ++  A + ++  
Sbjct: 86  VFSALGGFLFGYDTGVVSGAMLLLKRQLSLDALWQEL-------LVSSTVGAAAVSALAG 138

Query: 115 FNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAE 174
             +  + GRR  ++LA+ L+  G+ V A A +   ++ GR V G+GIG+A    P+YIAE
Sbjct: 139 GALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAE 198

Query: 175 TAPTPMRGQLISLKEFFIVLGMVGGYGI-GSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233
            +P  +RG+L+++   FI  G      + G+       GWRYM G +   AVI   G  +
Sbjct: 199 VSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAVPAVIQFFGFLF 258

Query: 234 LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRG-QSIGDSAPTEVDEILTELSYVGED 292
           LP SPRWL+     +KG  Q  R      L ++RG Q+I +   +  + I  E   VG  
Sbjct: 259 LPESPRWLI-----QKGQTQKARR----ILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSA 309

Query: 293 KEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ 336
             V  R + +    +ALI+G GL +FQQ++G  +++YY+A+ILQ
Sbjct: 310 GPVICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQ 353

H(+)-myo-inositol cotransporter. Can also transport related stereoisomers.

Homo sapiens (taxid: 9606)

>sp|Q8BFW9|GTR12_MOUSE Solute carrier family 2, facilitated glucose transporter member 12 OS=Mus musculus GN=Slc2a12 PE=2 SV=1

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 170/331 (51%), Gaps = 37/331 (11%)

Query: 12  LSSFGKVGKSSGEIG-SADEEPLIANGIRPSPENY--SVSAAILPFLFPALGGLLYGYDI 68
           L+  G+  ++ G  G S    P  A G  PS   +  SV+AAI         GLL GY++
Sbjct: 13  LNQKGREAETEGSCGASGGGHPACAGG--PSMFTFLTSVTAAI--------SGLLVGYEL 62

Query: 69  GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI 128
           G  S A + I +          L+  E  ++ S  L GA + S+    + D  GRR  +I
Sbjct: 63  GLISGALLQIRT-------LLALTCHEQEMVVSSLLIGAFLASLTGGVLIDRYGRRLAII 115

Query: 129 LAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLK 188
           L++ L  +G+LV  ++  + ++++GR   G+ I L+  A  +YIAE AP   RG L+SL 
Sbjct: 116 LSSCLLGLGSLVLIMSLSYTLLIMGRVAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLN 175

Query: 189 EFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKR 248
           E  IV G++  Y       ++  GW+YM+G   PL V+  + M++LP SPR+L+      
Sbjct: 176 ELMIVTGILFAYISNYAFANISNGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLV------ 229

Query: 249 KGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CL 306
              M+   ESA   L +LR   I D+     +E+    S + ++ + S  ++F  K    
Sbjct: 230 ---MKGQEESAGKVLRKLR--VISDTT----EELTLIKSSLKDEYQYSFWDLFRSKDNMR 280

Query: 307 KALIIGAGLVLFQQITGQPSVLYYAASILQD 337
             ++IG  LV F Q TGQP++L+YA+++L+ 
Sbjct: 281 TRILIGLTLVFFVQTTGQPNILFYASTVLKS 311

Facilitative glucose transporter.

Mus musculus (taxid: 10090)

>sp|Q5J316|GTR12_BOVIN Solute carrier family 2, facilitated glucose transporter member 12 OS=Bos taurus GN=SLC2A12 PE=1 SV=1

 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 154/282 (54%), Gaps = 24/282 (8%)

Query: 58  ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNI 117
           A+ G L GY++G  S A + I +  +       L+  E  ++ S  L GAL+ S++   +
Sbjct: 52  AVSGFLVGYELGIISGALLQIRTLLV-------LTCHEQEMVVSSLLIGALLASLIGGVL 104

Query: 118 ADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAP 177
            D  GRR  +IL++ L  +G+LV  ++  +  ++ GR   G+ I L+  A  +YIAE AP
Sbjct: 105 IDRYGRRAAIILSSCLLGLGSLVLIISLSYTTLIGGRIAIGVFISLSSTATCVYIAEIAP 164

Query: 178 TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS 237
              RG L+SL E  IV+G++  Y       ++  GW+YM+G   PL V+  + M++LP S
Sbjct: 165 QHRRGLLVSLNELMIVIGILFAYISNYAFANISHGWKYMFGLVIPLGVLQAIAMYFLPPS 224

Query: 238 PRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSL 297
           PR+L+         M+   E+A   L +LR  ++ D+     +E+    S + ++ + S 
Sbjct: 225 PRFLV---------MKGHEEAASKVLGKLR--AVLDTT----EELTVIKSSLKDEYQYSF 269

Query: 298 REVFHGK--CLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
            ++F  K      ++IG  LV F QITGQP++L+YA+++L+ 
Sbjct: 270 WDLFRSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKS 311

Facilitative glucose transporter.

Bos taurus (taxid: 9913)

>sp|O34718|IOLT_BACSU Major myo-inositol transporter IolT OS=Bacillus subtilis (strain 168) GN=iolT PE=2 SV=1

 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 151/289 (52%), Gaps = 25/289 (8%)

Query: 55  LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILA 114
           L    GGLL+GYD G  + A      P +      +L++   GL+TS  L+GA +G++  
Sbjct: 16  LVSTFGGLLFGYDTGVLNGAL-----PYMGEPDQLNLNAFTEGLVTSSLLFGAALGAVFG 70

Query: 115 FNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAE 174
             ++D  GRR+ ++  A+++ +  +    AP+  +M++ RFV GI +G A    P Y+AE
Sbjct: 71  GRMSDFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIAVGGASVTVPAYLAE 130

Query: 175 TAPTPMRGQLISLKEFFIV----LGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG 230
            +P   RG++++  E  IV    L  V    +G+ + D    WR+M   ++  A+ +  G
Sbjct: 131 MSPVESRGRMVTQNELMIVSGQLLAFVFNAILGTTMGDNSHVWRFMLVIASLPALFLFFG 190

Query: 231 MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVG 290
           M  +P SPRWL+      KG     +E A+  L ++R +     A  E+ EI  E ++  
Sbjct: 191 MIRMPESPRWLV-----SKGR----KEDALRVLKKIRDE---KRAAAELQEI--EFAFKK 236

Query: 291 EDK--EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
           ED+  + + +++      + + IG G+ + QQITG  S++YY   IL++
Sbjct: 237 EDQLEKATFKDLSVPWVRRIVFIGLGIAIVQQITGVNSIMYYGTEILRN 285

Major myo-inositol uptake transporter.

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
224144970	502	predicted protein [Populus trichocarpa]	0.938	0.663	0.824	1e-152
118486465	502	unknown [Populus trichocarpa]	0.938	0.663	0.824	1e-152
255557987	502	sugar transporter, putative [Ricinus com	0.932	0.659	0.761	1e-143
356538461	501	PREDICTED: D-xylose-proton symporter-lik	0.935	0.662	0.750	1e-138
357474255	501	D-xylose-proton symporter-like protein [	0.935	0.662	0.724	1e-138
388501928	501	unknown [Medicago truncatula]	0.935	0.662	0.721	1e-137
449438795	502	PREDICTED: D-xylose-proton symporter-lik	0.912	0.645	0.736	1e-137
449526179	459	PREDICTED: D-xylose-proton symporter-lik	0.912	0.705	0.736	1e-137
297811841	502	sugar transporter family protein [Arabid	0.935	0.661	0.721	1e-136
225454803	500	PREDICTED: D-xylose-proton symporter-lik	0.926	0.658	0.790	1e-136

>gi|224144970|ref|XP_002325479.1| predicted protein [Populus trichocarpa] gi|222862354|gb|EEE99860.1| predicted protein [Populus trichocarpa]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/337 (82%), Positives = 303/337 (89%), Gaps = 4/337 (1%)

Query: 1   MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
           MA DPEQ    LSS GKVGKSSGEIG   EEPL+  GI  S ENYS+++AI PFLFPALG
Sbjct: 1   MAPDPEQPT--LSSLGKVGKSSGEIGGV-EEPLLNGGIHTS-ENYSLASAIFPFLFPALG 56

Query: 61  GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
           GLLYGYDIGSTSCATISI+S TLSGISWY+L+SV+IGLITSGSLYGALIGS+LAFNIAD 
Sbjct: 57  GLLYGYDIGSTSCATISIQSATLSGISWYNLNSVDIGLITSGSLYGALIGSVLAFNIADF 116

Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
           LGRRRELILAA LYLVGALVTALAP F +MV+GRFVFGIGIGLAMHAAPMYIAETAP+ +
Sbjct: 117 LGRRRELILAAFLYLVGALVTALAPAFAVMVIGRFVFGIGIGLAMHAAPMYIAETAPSHI 176

Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
           RGQLISLKEFFIVLGMVGGYGIGSLLVD VAGWRYMY ASTPLAVIMG+GMWWLPASPRW
Sbjct: 177 RGQLISLKEFFIVLGMVGGYGIGSLLVDTVAGWRYMYVASTPLAVIMGIGMWWLPASPRW 236

Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
           LLL A++ KG MQ+LRE+AI CLCRLRG++IGD+AP +VDEIL EL+ VGE+KEV+L EV
Sbjct: 237 LLLRAIQGKGSMQELRETAICCLCRLRGEAIGDTAPAKVDEILAELAVVGEEKEVTLAEV 296

Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
           F GKCLKAL IGAGLVLFQQITGQPSVLYYAASILQ 
Sbjct: 297 FRGKCLKALTIGAGLVLFQQITGQPSVLYYAASILQS 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486465|gb|ABK95072.1| unknown [Populus trichocarpa]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/337 (82%), Positives = 302/337 (89%), Gaps = 4/337 (1%)

Query: 1   MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
           MA DPEQ    LSS GKVGKSSGEIG   EEPL+  GI  S ENYS+ +AI PFLFPALG
Sbjct: 1   MAPDPEQPT--LSSLGKVGKSSGEIGGV-EEPLLNGGIHTS-ENYSLVSAIFPFLFPALG 56

Query: 61  GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
           GLLYGYDIGSTSCATISI+S TLSGISWY+L+SV+IGLITSGSLYGALIGS+LAFNIAD 
Sbjct: 57  GLLYGYDIGSTSCATISIKSATLSGISWYNLNSVDIGLITSGSLYGALIGSVLAFNIADF 116

Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
           LGRRRELILAA LYLVGALVTALAP F +MV+GRFVFGIGIGLAMHAAPMYIAETAP+ +
Sbjct: 117 LGRRRELILAAFLYLVGALVTALAPAFAVMVIGRFVFGIGIGLAMHAAPMYIAETAPSHI 176

Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
           RGQLISLKEFFIVLGMVGGYGIGSLLVD VAGWRYMY ASTPLAVIMG+GMWWLPASPRW
Sbjct: 177 RGQLISLKEFFIVLGMVGGYGIGSLLVDTVAGWRYMYVASTPLAVIMGIGMWWLPASPRW 236

Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
           LLL A++ KG MQ+LRE+AI CLCRLRG++IGD+AP +VDEIL EL+ VGE+KEV+L EV
Sbjct: 237 LLLRAIQGKGSMQELRETAICCLCRLRGEAIGDTAPAKVDEILAELAVVGEEKEVTLAEV 296

Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
           F GKCLKAL IGAGLVLFQQITGQPSVLYYAASILQ 
Sbjct: 297 FRGKCLKALTIGAGLVLFQQITGQPSVLYYAASILQS 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557987|ref|XP_002520022.1| sugar transporter, putative [Ricinus communis] gi|223540786|gb|EEF42346.1| sugar transporter, putative [Ricinus communis]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 256/336 (76%), Positives = 296/336 (88%), Gaps = 5/336 (1%)

Query: 2   ATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGG 61
           ATD EQ     SS GKVGKSSGEI  A EEPL+  G   S E YS+ AA+LPFLFPALGG
Sbjct: 3   ATDLEQPS--FSSLGKVGKSSGEIDGA-EEPLLNGG--SSSEYYSILAAVLPFLFPALGG 57

Query: 62  LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL 121
           LLYGYDIG+TSCATI+IES T SGISWY+L++V++GLITSGSLYGALIGS++AFNIAD L
Sbjct: 58  LLYGYDIGATSCATITIESATSSGISWYNLNAVQLGLITSGSLYGALIGSVVAFNIADFL 117

Query: 122 GRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMR 181
           GRRRELI+AALLYLVGALVT LAPDF++MV+GRFV+GIGIGLAMHAAPMYIAETAP+ +R
Sbjct: 118 GRRRELIVAALLYLVGALVTGLAPDFVVMVIGRFVYGIGIGLAMHAAPMYIAETAPSQIR 177

Query: 182 GQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWL 241
           G+LISLKEFFIVLGMV GYG+GSLLVD+V GWRYMY AS PLAVIMG+GMW LP SPRW+
Sbjct: 178 GRLISLKEFFIVLGMVAGYGVGSLLVDIVRGWRYMYVASAPLAVIMGVGMWCLPQSPRWI 237

Query: 242 LLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVF 301
           LLCAM+ KG+MQDL+E+AI CLC+LRG +IGD+AP  V+E+L+EL++VGE+KE SLR++F
Sbjct: 238 LLCAMQGKGNMQDLKETAICCLCKLRGGAIGDAAPALVEEMLSELAFVGEEKETSLRDLF 297

Query: 302 HGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
            GKCLKAL IGAGLV+FQQITGQPSVLYYA SI Q 
Sbjct: 298 KGKCLKALTIGAGLVIFQQITGQPSVLYYAGSIFQS 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538461|ref|XP_003537722.1| PREDICTED: D-xylose-proton symporter-like 2-like [Glycine max]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/337 (75%), Positives = 293/337 (86%), Gaps = 5/337 (1%)

Query: 1   MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
           MA+DPEQ     SSF K  +S GEIGSA E PL+ NG+  S E+YSVSAAILPFLFPALG
Sbjct: 1   MASDPEQPAH--SSFAKEARSGGEIGSAIE-PLL-NGVHDS-ESYSVSAAILPFLFPALG 55

Query: 61  GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
           GLL+GYDIG+TS ATISI+SPTLSG+SWY LSSVEIGL+TSGSLYGALIGS+LAFN+AD 
Sbjct: 56  GLLFGYDIGATSSATISIQSPTLSGVSWYKLSSVEIGLLTSGSLYGALIGSLLAFNVADF 115

Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
           LGRR+ELI AA++YLVGALVTALAP+F ++V+GR VFGIGIGLAMHAAPMYIAETAPTP+
Sbjct: 116 LGRRKELIGAAVVYLVGALVTALAPNFPVLVLGRLVFGIGIGLAMHAAPMYIAETAPTPI 175

Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
           RGQLISLKEFFIVLGMV GYGIGSL V+ V+GWRYMYG S+P+A+IMG+GMWWLPASPRW
Sbjct: 176 RGQLISLKEFFIVLGMVAGYGIGSLFVETVSGWRYMYGVSSPVAIIMGVGMWWLPASPRW 235

Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
           LLL A++ KGD+Q+ ++ AI  LC+LRGQ+  DS P +VDEIL ELSY+GE+KE +  E+
Sbjct: 236 LLLRAIQGKGDVQNSKDIAIRSLCQLRGQAFYDSVPWQVDEILAELSYLGEEKEATFGEL 295

Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
           F GKCLKAL IG+GLVLFQQITGQPSVLYYA SI Q 
Sbjct: 296 FQGKCLKALWIGSGLVLFQQITGQPSVLYYAGSIFQS 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474255|ref|XP_003607412.1| D-xylose-proton symporter-like protein [Medicago truncatula] gi|357474261|ref|XP_003607415.1| D-xylose-proton symporter-like protein [Medicago truncatula] gi|355508467|gb|AES89609.1| D-xylose-proton symporter-like protein [Medicago truncatula] gi|355508470|gb|AES89612.1| D-xylose-proton symporter-like protein [Medicago truncatula]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/337 (72%), Positives = 296/337 (87%), Gaps = 5/337 (1%)

Query: 1   MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
           MA+DPEQ    LSSF + GKSS E+ S + EPL+ NGI   P++YS+SAAILPFLFPA G
Sbjct: 1   MASDPEQPP--LSSFSQEGKSSTEVRS-EREPLL-NGIH-VPQDYSLSAAILPFLFPAFG 55

Query: 61  GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
           GLL+GYDIG+TS ATISI+S +LSGI+WYDL +VEIGL+TSGSLYGALIGS+LAFNIAD 
Sbjct: 56  GLLFGYDIGATSSATISIQSSSLSGITWYDLDAVEIGLLTSGSLYGALIGSVLAFNIADF 115

Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
           LGRRREL++AAL+YLVGAL+TA AP+F ++V+GR VFGIGIGLAMHAAPMYIAETAPTP+
Sbjct: 116 LGRRRELLVAALMYLVGALITAFAPNFPLLVIGRLVFGIGIGLAMHAAPMYIAETAPTPI 175

Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
           RGQL+SLKEFFIV+G+V GYG+GSLLVD VAGWRYM+G S+P+AVIMG GMWWLPASPRW
Sbjct: 176 RGQLVSLKEFFIVIGIVAGYGLGSLLVDTVAGWRYMFGISSPVAVIMGFGMWWLPASPRW 235

Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
           +LL A+++KGD+Q L+++AI  LC+L+G++  DSAP +VDEI+ E SY+GE+ +V+L E+
Sbjct: 236 ILLRAIQKKGDLQTLKDTAIRSLCQLQGRTFHDSAPQQVDEIMAEFSYLGEENDVTLGEM 295

Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
           F GKC KAL+I AGLVLFQQITGQPSVLYYAASILQ 
Sbjct: 296 FRGKCRKALVISAGLVLFQQITGQPSVLYYAASILQS 332

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501928|gb|AFK39030.1| unknown [Medicago truncatula]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/337 (72%), Positives = 296/337 (87%), Gaps = 5/337 (1%)

Query: 1   MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
           MA+DPEQ    LSSF + GKSS E+ S + EPL+ NGI   P++YS+SAAILPFLFPA G
Sbjct: 1   MASDPEQPP--LSSFSQEGKSSTEVRS-EREPLL-NGIH-VPQDYSLSAAILPFLFPAFG 55

Query: 61  GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
           GLL+GYDIG+TS ATISI+S +LSGI+WYDL +VEIGL+TSGSLYGALIGS+LAFNIAD 
Sbjct: 56  GLLFGYDIGATSSATISIQSSSLSGITWYDLDAVEIGLLTSGSLYGALIGSVLAFNIADF 115

Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
           LGRRREL++AAL+YLVGAL+TA AP+F ++++GR VFGIGIGLAMHAAPMYIAETAPTP+
Sbjct: 116 LGRRRELLVAALMYLVGALITAFAPNFPLLLIGRLVFGIGIGLAMHAAPMYIAETAPTPI 175

Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
           RGQL+SLKEFFIV+G+V GYG+GSLLVD VAGWRYM+G S+P+AVIMG GMWWLPASPRW
Sbjct: 176 RGQLVSLKEFFIVIGIVAGYGLGSLLVDTVAGWRYMFGISSPVAVIMGFGMWWLPASPRW 235

Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
           +LL A+++KGD+Q L+++AI  LC+L+G++  DSAP +VDEI+ E SY+GE+ +V+L E+
Sbjct: 236 ILLRAIQKKGDLQTLKDTAIRSLCQLQGRTFHDSAPQQVDEIMAEFSYLGEENDVTLGEM 295

Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
           F GKC KAL+I AGLVLFQQITGQPSVLYYAASILQ 
Sbjct: 296 FRGKCRKALVISAGLVLFQQITGQPSVLYYAASILQS 332

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438795|ref|XP_004137173.1| PREDICTED: D-xylose-proton symporter-like 2-like [Cucumis sativus]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/326 (73%), Positives = 289/326 (88%), Gaps = 2/326 (0%)

Query: 12  LSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGST 71
           LSS GKVG+SSGEI +  EEPLI+   + S EN+S  AAILPFLFPALGGLLYGYDIG+T
Sbjct: 10  LSSLGKVGQSSGEIDNV-EEPLISVEFKHS-ENFSARAAILPFLFPALGGLLYGYDIGAT 67

Query: 72  SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA 131
           SCATIS++S + SGISWY+LSSVE+GL+TSGSLYGALIGS+LAFN+AD LGRRRELIL+A
Sbjct: 68  SCATISLQSASSSGISWYNLSSVEVGLVTSGSLYGALIGSVLAFNVADFLGRRRELILSA 127

Query: 132 LLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFF 191
           L+YLVGA++T LAP+F+I+++GR + G GIGLAMHAAPMYIAET+P+ +RGQ+ISLKEFF
Sbjct: 128 LMYLVGAIITGLAPNFVILIIGRIISGTGIGLAMHAAPMYIAETSPSKIRGQMISLKEFF 187

Query: 192 IVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGD 251
           IVLGMV GY IGSLLV++VAGWRY+Y A+TP+A++MG+GMWWLP+SPRWLLLCA++RKG+
Sbjct: 188 IVLGMVLGYSIGSLLVEVVAGWRYIYAANTPIALVMGVGMWWLPSSPRWLLLCAIQRKGN 247

Query: 252 MQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALII 311
           M DL+E AISCL RLRG  IG++A  EV+EIL ELS++GE +E S+ E+F GKCLKALII
Sbjct: 248 MADLKERAISCLHRLRGAVIGETASEEVNEILEELSFLGESEEASIGEIFQGKCLKALII 307

Query: 312 GAGLVLFQQITGQPSVLYYAASILQD 337
           GAGLVLFQQITGQPSVLYYA SI Q 
Sbjct: 308 GAGLVLFQQITGQPSVLYYAPSIFQS 333

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526179|ref|XP_004170091.1| PREDICTED: D-xylose-proton symporter-like 2-like, partial [Cucumis sativus]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/326 (73%), Positives = 289/326 (88%), Gaps = 2/326 (0%)

Query: 12  LSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGST 71
           LSS GKVG+SSGEI +  EEPLI+   + S EN+S  AAILPFLFPALGGLLYGYDIG+T
Sbjct: 10  LSSLGKVGQSSGEIDNV-EEPLISVEFKHS-ENFSARAAILPFLFPALGGLLYGYDIGAT 67

Query: 72  SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA 131
           SCATIS++S + SGISWY+LSSVE+GL+TSGSLYGALIGS+LAFN+AD LGRRRELIL+A
Sbjct: 68  SCATISLQSASSSGISWYNLSSVEVGLVTSGSLYGALIGSVLAFNVADFLGRRRELILSA 127

Query: 132 LLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFF 191
           L+YLVGA++T LAP+F+I+++GR + G GIGLAMHAAPMYIAET+P+ +RGQ+ISLKEFF
Sbjct: 128 LMYLVGAIITGLAPNFVILIIGRIISGTGIGLAMHAAPMYIAETSPSKIRGQMISLKEFF 187

Query: 192 IVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGD 251
           IVLGMV GY IGSLLV++VAGWRY+Y A+TP+A++MG+GMWWLP+SPRWLLLCA++RKG+
Sbjct: 188 IVLGMVLGYSIGSLLVEVVAGWRYIYAANTPIALVMGVGMWWLPSSPRWLLLCAIQRKGN 247

Query: 252 MQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALII 311
           M DL+E AISCL RLRG  IG++A  EV+EIL ELS++GE +E S+ E+F GKCLKALII
Sbjct: 248 MADLKERAISCLHRLRGAVIGETASEEVNEILEELSFLGESEEASIGEIFQGKCLKALII 307

Query: 312 GAGLVLFQQITGQPSVLYYAASILQD 337
           GAGLVLFQQITGQPSVLYYA SI Q 
Sbjct: 308 GAGLVLFQQITGQPSVLYYAPSIFQS 333

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811841|ref|XP_002873804.1| sugar transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297319641|gb|EFH50063.1| sugar transporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/338 (72%), Positives = 290/338 (85%), Gaps = 6/338 (1%)

Query: 1   MATDPEQARARLSSFGK-VGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPAL 59
           MA DPEQ    +SS  + VGKS GEI SA+ EPLI      +PENYSV AAILPF FPAL
Sbjct: 1   MALDPEQQP--ISSVSREVGKSDGEI-SAEREPLIKE--NHTPENYSVVAAILPFFFPAL 55

Query: 60  GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD 119
           GGLLYGY+IG+TSCATIS++SP+LSGISWY+L+SV++GL+TSGSLYGAL GSI+AF IAD
Sbjct: 56  GGLLYGYEIGATSCATISLQSPSLSGISWYNLTSVDVGLVTSGSLYGALFGSIVAFTIAD 115

Query: 120 ILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP 179
           ++GRR+ELILAALLYLVGALVTALAP + ++++GR  +G+ +GLAMHAAPMYIAETAP+P
Sbjct: 116 VIGRRKELILAALLYLVGALVTALAPTYSVLIIGRVTYGVSVGLAMHAAPMYIAETAPSP 175

Query: 180 MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPR 239
           +RGQL+SLKEFFIVLGMVGGYGIGSL V++ +GWRYMY  S PLAVIMG+GMWWLPASPR
Sbjct: 176 IRGQLVSLKEFFIVLGMVGGYGIGSLTVNIHSGWRYMYATSVPLAVIMGIGMWWLPASPR 235

Query: 240 WLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLRE 299
           WLLL  ++ KG++++ RESAI  LCRLRG +  DSA  +V+EIL EL++VGEDKEV+  E
Sbjct: 236 WLLLRVIQGKGNVENQRESAIKSLCRLRGPAFVDSAAEQVNEILAELTFVGEDKEVTFGE 295

Query: 300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
           +FHGKCLKALIIG GLVLFQQITGQPSVLYYA SILQ 
Sbjct: 296 LFHGKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQT 333

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454803|ref|XP_002277076.1| PREDICTED: D-xylose-proton symporter-like 2 [Vitis vinifera] gi|297737329|emb|CBI26530.3| unnamed protein product [Vitis vinifera]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/334 (79%), Positives = 294/334 (88%), Gaps = 5/334 (1%)

Query: 4   DPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLL 63
           D EQ    L+S GKVGKSSGEI    +EPLI +G+  S ENYSV+AAILPFLFPALGGLL
Sbjct: 3   DLEQPS--LTSLGKVGKSSGEI-DGMQEPLI-DGVGSS-ENYSVAAAILPFLFPALGGLL 57

Query: 64  YGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR 123
           YGYDIG+TSCA ISIES +LSGISWYDLSSV+IGL TSGSLYGALIGS+LAFNIAD  GR
Sbjct: 58  YGYDIGATSCALISIESSSLSGISWYDLSSVQIGLTTSGSLYGALIGSVLAFNIADFFGR 117

Query: 124 RRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQ 183
           RRELILAALLYLVGALVTA+AP FI+MV+GRFVFGIGIGL+MHAAPMYIAETAPT +RG+
Sbjct: 118 RRELILAALLYLVGALVTAVAPSFIVMVIGRFVFGIGIGLSMHAAPMYIAETAPTQIRGR 177

Query: 184 LISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLL 243
           LISLKEFFIVLGMV GY +GSLLVD+V+GWRYMYG S+PL+VIMG+GMWWLPASPRWLLL
Sbjct: 178 LISLKEFFIVLGMVVGYTVGSLLVDMVSGWRYMYGVSSPLSVIMGIGMWWLPASPRWLLL 237

Query: 244 CAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHG 303
            A++ KG+MQDL+E+AI CLCRLRG +IGDSAP +VD IL ELS   E KE SL E+FHG
Sbjct: 238 RAIQGKGNMQDLKENAIFCLCRLRGPAIGDSAPAQVDGILDELSSSEETKEASLGEMFHG 297

Query: 304 KCLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337
           KCLKAL IG GLVLFQQITGQPSVLYYAASIL+ 
Sbjct: 298 KCLKALTIGGGLVLFQQITGQPSVLYYAASILES 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
TAIR|locus:2148201	503	AT5G17010 [Arabidopsis thalian	0.938	0.662	0.607	4.4e-100
TAIR|locus:2097780	503	VGT1 "vacuolar glucose transpo	0.932	0.658	0.568	4.5e-91
TAIR|locus:2168494	558	AT5G59250 [Arabidopsis thalian	0.926	0.589	0.459	4.8e-71
UNIPROTKB|F1S3R3	621	SLC2A12 "Uncharacterized prote	0.650	0.371	0.306	3.7e-22
UNIPROTKB|F1PA43	614	SLC2A12 "Uncharacterized prote	0.447	0.258	0.357	2.4e-21
UNIPROTKB|F1MIV2	621	SLC2A12 "Solute carrier family	0.650	0.371	0.306	2.7e-21
UNIPROTKB|Q8TD20	617	SLC2A12 "Solute carrier family	0.647	0.372	0.309	7.3e-21
UNIPROTKB|Q5J316	621	SLC2A12 "Solute carrier family	0.650	0.371	0.302	7.4e-21
UNIPROTKB|F1P4J7	561	SLC2A12 "Uncharacterized prote	0.650	0.411	0.298	2e-20
MGI|MGI:3052471	622	Slc2a12 "solute carrier family	0.825	0.471	0.284	5.4e-20

TAIR|locus:2148201 AT5G17010 [Arabidopsis thaliana (taxid:3702)]

 Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
 Identities = 204/336 (60%), Positives = 241/336 (71%)

Query:     1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAIXXXXXXXXX 60
             MA DPEQ +   S   + GKSSGEI S + EPLI       PENYSV AAI         
Sbjct:     1 MALDPEQQQPISSVSREFGKSSGEI-SPEREPLIKEN--HVPENYSVVAAILPFLFPALG 57

Query:    61 XXXXXXDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
                   +IG+TSCATIS++SP+LSGISWY+LSSV++GL+TSGSLYGAL GSI+AF IAD+
Sbjct:    58 GLLYGYEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADV 117

Query:   121 LGRRREXXXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXXXXXLAMHAAPMYIAETAPTPM 180
             +GRR+E                  P                 LAMHAAPMYIAETAP+P+
Sbjct:   118 IGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPI 177

Query:   181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
             RGQL+SLKEFFIVLGMVGGYGIGSL V++ +GWRYMY  S PLAVIMG+GMWWLPASPRW
Sbjct:   178 RGQLVSLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRW 237

Query:   241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
             LLL  ++ KG++++ RE+AI  LC LRG +  DSA  +V+EIL EL++VGEDKEV+  E+
Sbjct:   238 LLLRVIQGKGNVENQREAAIKSLCCLRGPAFVDSAAEQVNEILAELTFVGEDKEVTFGEL 297

Query:   301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ 336
             F GKCLKALIIG GLVLFQQITGQPSVLYYA SILQ
Sbjct:   298 FQGKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQ 333

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2097780 VGT1 "vacuolar glucose transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 192/338 (56%), Positives = 232/338 (68%)

Query:     1 MATDPEQARARLSSFGKV--GKSSGEIGSADEEPLIANGIRPSPENYSVSAAIXXXXXXX 58
             M  DPE     +SS G+V    SSG I +A++EPL+      SPENYSV AAI       
Sbjct:     1 MGFDPENQS--ISSVGQVVGDSSSGGI-TAEKEPLLKEN--HSPENYSVLAAIPPFLFPA 55

Query:    59 XXXXXXXXDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIA 118
                     +IG+TSCA +S++SPTLSGISWYDLSSV++G+ITSGSLYGALIGSI+AF++A
Sbjct:    56 LGALLFGYEIGATSCAIMSLKSPTLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVA 115

Query:   119 DILGRRREXXXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXXXXXLAMHAAPMYIAETAPT 178
             DI+GRR+E                  P                 L MHAAPMYIAETAP+
Sbjct:   116 DIIGRRKELILAAFLYLVGAIVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPS 175

Query:   179 PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP 238
              +RG++ISLKEF  VLGMVGGYGIGSL + +++GWRYMY    P  VIMG GM WLPASP
Sbjct:   176 QIRGRMISLKEFSTVLGMVGGYGIGSLWITVISGWRYMYATILPFPVIMGTGMCWLPASP 235

Query:   239 RWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLR 298
             RWLLL A++ +G+ ++L+++AI  LCRLRG  I DSA  +V+EIL ELS VGEDKE +  
Sbjct:   236 RWLLLRALQGQGNGENLQQAAIRSLCRLRGSVIADSAAEQVNEILAELSLVGEDKEATFG 295

Query:   299 EVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ 336
             E+F GKCLKAL I  GLVLFQQITGQPSVLYYA SILQ
Sbjct:   296 ELFRGKCLKALTIAGGLVLFQQITGQPSVLYYAPSILQ 333

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005353 "fructose transmembrane transporter activity" evidence=IDA

GO:0005355 "glucose transmembrane transporter activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009845 "seed germination" evidence=IMP

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0015755 "fructose transport" evidence=IDA

GO:0015758 "glucose transport" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2168494 AT5G59250 [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 155/337 (45%), Positives = 206/337 (61%)

Query:     5 PEQARARLSSFGKVG-KSSGEIGSADEEPLIANGIRP-SPENYSVSAAIXXXXXXXXXXX 62
             P     R     +VG ++ GE   + E   +A+ +   +PE++S S+ I           
Sbjct:    54 PGLVTTRYRHIFQVGAETGGEFADSGE---VADSLASDAPESFSWSSVILPFIFPALGGL 110

Query:    63 XXXXDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG 122
                 DIG+TS AT+S++SP LSG +W++ S V++GL+ SGSLYGAL+GSI  + +AD LG
Sbjct:   111 LFGYDIGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLG 170

Query:   123 RRREXXXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXXXXXLAMHAAPMYIAETAPTPMRG 182
             RRRE                  PD                LAMH AP+YIAET P+ +RG
Sbjct:   171 RRRELIIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRG 230

Query:   183 QLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLL 242
              LISLKE FIVLG++ G+ +GS  +D+V GWRYMYG  TP+A++MG+GMW LPASPRWLL
Sbjct:   231 TLISLKELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLL 290

Query:   243 LCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTE-VDEILTELSYVGEDKEV--SLRE 299
             L A++ KG +Q+ +E A+  L +LRG+  GD    + VD+    +    ED++   +  E
Sbjct:   291 LRAVQGKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLE 350

Query:   300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ 336
             VF G  LKAL IG GLVLFQQITGQPSVLYYA SILQ
Sbjct:   351 VFQGPNLKALTIGGGLVLFQQITGQPSVLYYAGSILQ 387

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

UNIPROTKB|F1S3R3 SLC2A12 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 266 (98.7 bits), Expect = 3.7e-22, P = 3.7e-22
 Identities = 76/248 (30%), Positives = 120/248 (48%)

Query:    91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
             L+  E  ++ S  L GAL+ S++   + D  GRR                          
Sbjct:    78 LTCHEQEMVVSSLLIGALLASLVGGVVIDRYGRRAAIILSSCLLGVGSLVLIVTLSYAAL 137

Query:   151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
                         L+  A  +YIAE AP   RG L+SL E  IV+G++  Y       ++ 
Sbjct:   138 IVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYVSNYTFANIS 197

Query:   211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270
              GW+YM+G   PL V+  + M++LP SPR+L++     KG      E+A   L +LR  +
Sbjct:   198 HGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KGQ----EEAASKVLGKLR--A 246

Query:   271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVL 328
             + D  PTE  E+    S + ++ + S  ++F  K      ++IG  LV F QITGQP++L
Sbjct:   247 VSD--PTE--ELTAIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNIL 302

Query:   329 YYAASILQ 336
             +YA+++L+
Sbjct:   303 FYASTVLK 310

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1PA43 SLC2A12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 237 (88.5 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
 Identities = 63/176 (35%), Positives = 100/176 (56%)

Query:   163 LAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTP 222
             L+  A  +YIAE AP   RG L+SL E  IV+G++  Y       ++  GW+YM+G   P
Sbjct:   146 LSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFANVSHGWKYMFGLVIP 205

Query:   223 LAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEI 282
               V+  + M++LP SPR+L++     KG      E+A   L RLR  +I D+  TE  E+
Sbjct:   206 FGVLQAIAMYFLPPSPRFLVM-----KGH----EEAASKVLRRLR--AISDT--TE--EL 250

Query:   283 LTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVLYYAASILQ 336
                 S + ++ + S  ++F  K      ++IG  LV F Q+TGQP++L+YA+++L+
Sbjct:   251 TGIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQVTGQPNILFYASTVLK 306

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1MIV2 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)]

 Score = 258 (95.9 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 76/248 (30%), Positives = 120/248 (48%)

Query:    91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
             L+  E  ++ S  L GAL+ S++   + D  GRR                          
Sbjct:    78 LTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRRAAIILSSCLLGLGSLVLIISLSYTTL 137

Query:   151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
                         L+  A  +YIAE AP   RG L+SL E  IV+G++  Y       ++ 
Sbjct:   138 IGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFANIS 197

Query:   211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270
              GW+YM+G   PL V+  + M++LP SPR+L++     KG      E+A   L +LR  +
Sbjct:   198 HGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KGH----EEAASKVLGKLR--A 246

Query:   271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVL 328
             I D+  TE  E+    S + ++ + S  ++F  K      ++IG  LV F QITGQP++L
Sbjct:   247 ISDT--TE--ELTVIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLMLVFFVQITGQPNIL 302

Query:   329 YYAASILQ 336
             +YA+++L+
Sbjct:   303 FYASTVLK 310

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q8TD20 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 7.3e-21, P = 7.3e-21
 Identities = 77/249 (30%), Positives = 120/249 (48%)

Query:    91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
             LS  E  ++ S  + GAL+ S+    + D  GRR                          
Sbjct:    74 LSCHEQEMVVSSLVIGALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLSYTVL 133

Query:   151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
                         L+  A  +YIAE AP   RG L+SL E  IV+G++  Y       ++ 
Sbjct:   134 IVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILSAYISNYAFANVF 193

Query:   211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAIS-CLCRLRGQ 269
              GW+YM+G   PL V+  + M++LP SPR+L++     KG     +E A S  L RLR  
Sbjct:   194 HGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KG-----QEGAASKVLGRLR-- 241

Query:   270 SIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSV 327
             ++ D+  TE  E+    S + ++ + S  ++F  K      ++IG  LV F QITGQP++
Sbjct:   242 ALSDT--TE--ELTVIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNI 297

Query:   328 LYYAASILQ 336
             L+YA+++L+
Sbjct:   298 LFYASTVLK 306

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|Q5J316 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)]

 Score = 254 (94.5 bits), Expect = 7.4e-21, P = 7.4e-21
 Identities = 75/248 (30%), Positives = 120/248 (48%)

Query:    91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
             L+  E  ++ S  L GAL+ S++   + D  GRR                          
Sbjct:    78 LTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRRAAIILSSCLLGLGSLVLIISLSYTTL 137

Query:   151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
                         L+  A  +YIAE AP   RG L+SL E  IV+G++  Y       ++ 
Sbjct:   138 IGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFANIS 197

Query:   211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270
              GW+YM+G   PL V+  + M++LP SPR+L++     KG      E+A   L +LR  +
Sbjct:   198 HGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KGH----EEAASKVLGKLR--A 246

Query:   271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVL 328
             + D+  TE  E+    S + ++ + S  ++F  K      ++IG  LV F QITGQP++L
Sbjct:   247 VLDT--TE--ELTVIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNIL 302

Query:   329 YYAASILQ 336
             +YA+++L+
Sbjct:   303 FYASTVLK 310

GO:0012505 "endomembrane system" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1P4J7 SLC2A12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 2.0e-20, P = 2.0e-20
 Identities = 74/248 (29%), Positives = 116/248 (46%)

Query:    91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
             LS  E  ++ S  L+GAL  S+    + D  GRR                          
Sbjct:    44 LSCKEQEIVVSSLLFGALFASLTGGFLIDRFGRRFAIIIASSLLVMGSLILLPHESYGIL 103

Query:   151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
                         L+  A  +YIAE AP   RG L+SL E  IV+G++  Y        + 
Sbjct:   104 IVGRIAIGISISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFASVS 163

Query:   211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270
              GW+YM+G   PL  +  + M++LP SPR+L++    +  D     E+A   L RLR  S
Sbjct:   164 HGWKYMFGLVIPLGALQAIAMYFLPPSPRFLVM----KNND-----EAARKILERLRETS 214

Query:   271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKC-LKA-LIIGAGLVLFQQITGQPSVL 328
                 A  E+  I + L    ++ + S  ++F  K  ++A +++G  LV F Q TGQP++L
Sbjct:   215 ---DATKELTVIKSSLK---DEHQYSFVDLFRSKNNMRARMLVGLTLVFFVQTTGQPNIL 268

Query:   329 YYAASILQ 336
             +YA+++L+
Sbjct:   269 FYASTVLK 276

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:3052471 Slc2a12 "solute carrier family 2 (facilitated glucose transporter), member 12" [Mus musculus (taxid:10090)]

 Score = 246 (91.7 bits), Expect = 5.4e-20, P = 5.4e-20
 Identities = 94/330 (28%), Positives = 146/330 (44%)

Query:    12 LSSFGKVGKSSGEIG-SADEEPLIANGIRPSPENY--SVSAAIXXXXXXXXXXXXXXXDI 68
             L+  G+  ++ G  G S    P  A G  PS   +  SV+AAI               ++
Sbjct:    13 LNQKGREAETEGSCGASGGGHPACAGG--PSMFTFLTSVTAAISGLLVGY--------EL 62

Query:    69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXX 128
             G  S A + I   TL  ++ ++       ++ S  L GA + S+    + D  GRR    
Sbjct:    63 GLISGALLQIR--TLLALTCHEQE-----MVVSSLLIGAFLASLTGGVLIDRYGRRLAII 115

Query:   129 XXXXXXXXXXXXXXXXPDXXXXXXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLK 188
                                               L+  A  +YIAE AP   RG L+SL 
Sbjct:   116 LSSCLLGLGSLVLIMSLSYTLLIMGRVAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLN 175

Query:   189 EFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKR 248
             E  IV G++  Y       ++  GW+YM+G   PL V+  + M++LP SPR+L++     
Sbjct:   176 ELMIVTGILFAYISNYAFANISNGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM----- 230

Query:   249 KGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CL 306
             KG      ESA   L +LR   I D+  TE  E+    S + ++ + S  ++F  K    
Sbjct:   231 KGQ----EESAGKVLRKLR--VISDT--TE--ELTLIKSSLKDEYQYSFWDLFRSKDNMR 280

Query:   307 KALIIGAGLVLFQQITGQPSVLYYAASILQ 336
               ++IG  LV F Q TGQP++L+YA+++L+
Sbjct:   281 TRILIGLTLVFFVQTTGQPNILFYASTVLK 310

GO:0003674 "molecular_function" evidence=ND

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015758 "glucose transport" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6AWX0	XYLL2_ARATH	No assigned EC number	0.7151	0.9408	0.6640	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIX.1554.1 SubName- Full=Putative uncharacterized protein; (484 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	355
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	5e-43
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	4e-40
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	3e-35
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-19
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	4e-19
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-15
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-14
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	8e-12
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	1e-11
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	6e-11
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	3e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	6e-09
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	8e-07
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	2e-06
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	1e-04
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	1e-04
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	1e-04
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	2e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	2e-04
pfam05631	354	pfam05631, DUF791, Protein of unknown function (DU	4e-04
PRK03545	390	PRK03545, PRK03545, putative arabinose transporter	5e-04
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	0.002
PRK03699	394	PRK03699, PRK03699, putative transporter; Provisio	0.002

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  154 bits (391), Expect = 5e-43
 Identities = 101/292 (34%), Positives = 153/292 (52%), Gaps = 21/292 (7%)

Query: 55  LFPALGGLLYGYDIGSTSCATISIES----PTLSGISWYDLSSVEIGLITSGSLYGALIG 110
           L  ALGG L+GYD G        I+       L+ I     S+V  GLI S    G LIG
Sbjct: 3   LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62

Query: 111 SILAFNIADILGRRRELILAALLYLVGALVTALAPD--FIIMVVGRFVFGIGIGLAMHAA 168
           S+ A  + D  GR++ L++  +L+++GAL+   A    F +++VGR + G+G+G      
Sbjct: 63  SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLV 122

Query: 169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA--GWRYMYGASTPLAVI 226
           PMYI+E AP  +RG L SL +  I  G++    IG  L       GWR   G     A++
Sbjct: 123 PMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAIL 182

Query: 227 MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTEL 286
           + +G+ +LP SPRWL+L     KG +++ R      L +LRG S  D    E+ E    L
Sbjct: 183 LLIGLLFLPESPRWLVL-----KGKLEEARAV----LAKLRGVSDVDQ---EIQEEKDSL 230

Query: 287 SYVGEDKEVSLREVFHGKCLK-ALIIGAGLVLFQQITGQPSVLYYAASILQD 337
               E ++ S  E+F GK ++  L++G  L +FQQ+TG  ++ YY+ +I + 
Sbjct: 231 ERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFET 282

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  147 bits (372), Expect = 4e-40
 Identities = 99/322 (30%), Positives = 157/322 (48%), Gaps = 18/322 (5%)

Query: 25  IGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLS 84
           +  A+        + P+    +     L  L  A+GGL++GYD G    A          
Sbjct: 1   MSDANLADASELLVTPAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKF 60

Query: 85  GIS-WYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL 143
             +     SS   GL+ S  L G  IG++ A  ++D  GR++ L++ ALL+++GA++  L
Sbjct: 61  TSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGL 120

Query: 144 AP---DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGY 200
           A       +++VGR + GIG+G+A    PMY++E AP  +RG L SL +  I  G++  Y
Sbjct: 121 AAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180

Query: 201 GIGSLLVDLVA--GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRES 258
           G GS  V L    GWR   G     A ++ +G+++LP SPRWL+          +   E 
Sbjct: 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLV---------GKGRVEE 231

Query: 259 AISCLCRLRGQSIGDSA-PTEVDEILTELSYVGEDKEVSLREVF--HGKCLKALIIGAGL 315
           A   L RLRG S  D     E++ I  + S      + S   +F    +  + L +G  L
Sbjct: 232 ARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVL 291

Query: 316 VLFQQITGQPSVLYYAASILQD 337
             FQQ TG  +++YY+ +I ++
Sbjct: 292 QWFQQFTGINAIMYYSPTIFEN 313

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  134 bits (338), Expect = 3e-35
 Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 39/304 (12%)

Query: 55  LFPALGGLLYGYDIGSTSCATISIESPTLSGISW-YDLSSVEIGLITSGSLYGALIGSIL 113
           L   LGGLL+GYD    S    S+ +  ++  +     ++  +G   + +L G +IG  L
Sbjct: 15  LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGAL 74

Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGR--------FVF-----GIG 160
               ++  GRR  L +AA+L+ + AL +A  P+F    +G         FV      GIG
Sbjct: 75  GGYCSNRFGRRDSLKIAAVLFFISALGSA-WPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133

Query: 161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV----GGYGI---GSLLVDLVAGW 213
           +GLA   +PMYIAE AP  +RG+L+S  +F I+ G +      Y I   G        GW
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193

Query: 214 RYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGD 273
           RYM+ +    A++  M ++++P +PR+L+          +  +E A   L ++ G +   
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLM---------SRGKQEQAEGILRKIMGNT--- 241

Query: 274 SAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAAS 333
            A   + EI   L +  +      + +  G  +  ++IG  L +FQQ  G   VLYYA  
Sbjct: 242 LATQALQEIKHSLDHGRKTGG---KLLMFGVGV--IVIGVMLSVFQQFVGINVVLYYAPE 296

Query: 334 ILQD 337
           I + 
Sbjct: 297 IFKT 300

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 87.8 bits (218), Expect = 2e-19
 Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 8/193 (4%)

Query: 54  FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSIL 113
            L   LG  L G D G  S A   +            LS+ + GLI S    G  +GS+L
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLL-------AEDLGLSASQAGLIVSAFSLGYALGSLL 53

Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIA 173
           A  ++D  GRRR L+L  LL+ +G+L+ A A    +++VGRF+ G+G G    AA   IA
Sbjct: 54  AGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIA 113

Query: 174 ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233
           E  P   RG+ + L      LG + G  +G LL +   GWR+++     L +++ + + +
Sbjct: 114 EWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-LGWRWLFLILAILGLLLALLLLF 172

Query: 234 LPASPRWLLLCAM 246
           L      L L   
Sbjct: 173 LLRLLLLLALAFF 185

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 14/210 (6%)

Query: 34  IANGIRPSPEN-YSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLS 92
           + N IR  P + Y   A IL FL      L+ GYD+     A +   +P +S   W  L 
Sbjct: 2   VQNNIRKQPLSRYQWRAIILSFL----IMLMDGYDL-----AAMGFAAPAISA-EW-GLD 50

Query: 93  SVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVV 152
            V++G + S  L G   G++    +AD +GRRR L+ + LL+ V  L+ ALA +   +++
Sbjct: 51  PVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLI 110

Query: 153 GRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG 212
            RF+ G+G+G  M      ++E AP   RG  + L      +G   G  +   L+  V G
Sbjct: 111 LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP-VFG 169

Query: 213 WRYMYGASTPLAVIMGMGMW-WLPASPRWL 241
           WR ++       +++ + +  +LP S  +L
Sbjct: 170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFL 199

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 42/152 (27%), Positives = 79/152 (51%), Gaps = 4/152 (2%)

Query: 92  SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMV 151
            + ++ L  S    G L+GS +   ++D  GR++ L+L+ L+  V  ++TA +P++ + +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184

Query: 152 VGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA 211
           V R + G+GIG     A +   E  P   R  + +L + F  LG+V    +  L+   + 
Sbjct: 185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV----LLPLVAYFIP 240

Query: 212 GWRYMYGASTPLAVIMGMGMWWLPASPRWLLL 243
            WR++  A +    +  +  W++P SPRWL+ 
Sbjct: 241 DWRWLQLAVSLPTFLFFLLSWFVPESPRWLIS 272

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 2/152 (1%)

Query: 89  YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
             +S  EIGL+ +    G  +   LA  ++D  GRRR L++  LL+ +G L+   A    
Sbjct: 27  LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLW 86

Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208
           +++V R + G+G G    AA   IA+  P   RG+ + L      LG   G  +G LL  
Sbjct: 87  LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLAS 146

Query: 209 LVAGWRYMYGASTPLAVIMG-MGMWWLPASPR 239
           L  GWR  +     LA++   +    LP  P 
Sbjct: 147 LF-GWRAAFLILAILALLAAVLAALLLPRPPP 177

Length = 346

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 65.4 bits (160), Expect = 8e-12
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 24/163 (14%)

Query: 91  LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIM 150
           L   ++G   S  + G L G++L   +AD +GR+R LI++  L+ + +L TA A DF  +
Sbjct: 47  LDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSL 106

Query: 151 VVGRFVFGIGIGLAMHAAPMYIA---ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV 207
           +V R + G+G+G A+   P  IA   E     +RG  +SL        M  G   G  L 
Sbjct: 107 LVARLLTGVGLGGAL---PNLIALTSEAVGPRLRGTAVSL--------MYCGVPFGGALA 155

Query: 208 DLVA-------GWRYMY--GASTPLAVIMGMGMWWLPASPRWL 241
            ++         WR+++  G   PL ++  + M WLP S  + 
Sbjct: 156 SVIGVLAAGDAAWRHIFYVGGVGPLLLVPLL-MRWLPESRAFA 197

Length = 406

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 96  IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRF 155
            G + +    G  +G+ L   +   L RRR L+    L++V  L++ALAP F ++++ R 
Sbjct: 50  AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109

Query: 156 VFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY 215
           + G+  G+    A    A   P   RG+ ++L    + L  V G  +G+ L  L  GWR 
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-GWRA 168

Query: 216 MYGASTPLAVIMGMGMWWL 234
            + A   LA++  + +W L
Sbjct: 169 TFLAIAVLALLALLLLWKL 187

Length = 394

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 59.2 bits (144), Expect = 6e-11
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 97  GLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFV 156
           GL+ +G   G LI S L+  + D  GR+  L++   ++++   + AL+ +  ++++ RF+
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 157 FGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM 216
            G G   A+ A    IA+  P   RG  + L    I LG + G  +G +L   + GWR  
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAP 119

Query: 217 Y 217
           +
Sbjct: 120 F 120

Length = 141

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 20/154 (12%)

Query: 89  YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
           + L++V+   + S +L     G+++     D  GRR  ++ + +L+  G L    AP +I
Sbjct: 42  FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYI 101

Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208
            M + R V GIG+G    ++  Y+ E+ P  +R +   L        ++ GY +G+++  
Sbjct: 102 TMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGL--------LISGYAVGAVVAA 153

Query: 209 LVA---------GWRYMYGASTPLAVIMGMGMWW 233
            V          GWR ++  S    +     +W 
Sbjct: 154 QVYSLVVPVWGDGWRALFFISILPIIFA---LWL 184

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 3/190 (1%)

Query: 47  VSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYG 106
           + A +L FL   L  L   + + S     +    P         LS+ E GL+ S    G
Sbjct: 165 LLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLY-LQEVLGLSAAEAGLLLSLFGLG 223

Query: 107 ALIGSILAFNIADILGRRRE-LILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAM 165
            ++G++L   ++D LGRRR  L++  LL  +G L+ ALAP   +++V   + G G+G A 
Sbjct: 224 GILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF 283

Query: 166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV 225
            A     +E AP   RG    L   F  LG   G  +  LL+D   G+  ++     LA+
Sbjct: 284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGGVFLILAALAL 342

Query: 226 IMGMGMWWLP 235
           +  + +  LP
Sbjct: 343 LAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 3/139 (2%)

Query: 73  CATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL 132
             T   +         +DL+  E  LI      G  I S+ A  +   LG +  ++L  L
Sbjct: 27  FITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLL 86

Query: 133 LYLVGALVTALAP---DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKE 189
           LY VGA +   A     +   +V  F+   GIGL   AA  Y+            ++L +
Sbjct: 87  LYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQ 146

Query: 190 FFIVLGMVGGYGIGSLLVD 208
            F  LG + G  +GS L+ 
Sbjct: 147 AFNGLGAILGPLLGSSLIL 165

Length = 422

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 23/140 (16%)

Query: 89  YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
           + L++V+   + S +      G +L   + D  GRR  ++++ +L+ VG L    AP + 
Sbjct: 50  FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYW 109

Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMR----GQLISLKEFFIVLGMVGGYGIGS 204
            + + R V G+G+     ++  Y+ E+ P  +R    G LIS            G+ IG+
Sbjct: 110 TLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLIS------------GFSIGA 157

Query: 205 LLVDLVA-------GWRYMY 217
           ++   V        GWR ++
Sbjct: 158 VVAAQVYSLVVPVWGWRALF 177

Length = 496

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 30/145 (20%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 82  TLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT 141
           +LS + W         +ITS  L  A+   +  + +A   G RR  +++   + +G+L+ 
Sbjct: 35  SLSQVQW---------VITSYMLANAISIPLTGW-LAKRFGTRRLFLISTFAFTLGSLLC 84

Query: 142 ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYG 201
            +AP+  +M++ R + G G G  +  +   +    P   RG+ +++    +++    G  
Sbjct: 85  GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT 144

Query: 202 IGSLLVDLVAGWRYMYGASTPLAVI 226
           +G  +++    WR+++  + P+ +I
Sbjct: 145 LGGWIIENY-HWRWIFLINVPIGII 168

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 13/204 (6%)

Query: 89  YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT--ALAPD 146
           +  S    GLI S   YG +I  I    +A     +  + +   L  V ++V   A    
Sbjct: 71  FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130

Query: 147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL 206
             ++V  R + G+  G    A    I + AP   R +L+ +           G+ +G+ +
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM--------STSGFQLGTFI 182

Query: 207 VDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMK-RKGDMQDLRESAISCLCR 265
              ++GW        P+   +  G+     S  W +  A            E        
Sbjct: 183 FLPISGWLCESWGGWPMIFYVF-GIVGCAWSLLWFVFPADDPSIHPCISKFEKK-YINSS 240

Query: 266 LRGQSIGDSAPTEVDEILTELSYV 289
           L+GQ         +  I   L   
Sbjct: 241 LQGQKGSTRQSLPIKAIPKSLPVW 264

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 1/120 (0%)

Query: 90  DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD-FI 148
              S   G + +    GAL+G++L   +     R   +  A  +  +  LV  L P  F 
Sbjct: 243 GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFP 302

Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208
           + +V  F  G+G G         +    P  + G++   +          G  +   L D
Sbjct: 303 LFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 23/137 (16%)

Query: 109 IGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF--------IIMVVGRFVFGIG 160
           +G+I+  +  D +GR++ L++  L+  +G L+  L P +        I++++ R + G  
Sbjct: 50  LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109

Query: 161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA--------- 211
           +G     A +Y+AE AP   RG   S    F  +G   G  + +L V L++         
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGS----FQQVGAPVGLLLAALTVLLLSYLLGDDALL 165

Query: 212 --GWRYMYGASTPLAVI 226
             GWR  +  S  L +I
Sbjct: 166 EWGWRIPFLVSAVLVLI 182

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 91  LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIM 150
           L+ +E   + + +  G   G  L   +AD  GR+  ++ + + Y VG  ++ LA   I++
Sbjct: 50  LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML 109

Query: 151 VVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL- 209
            + RF+ G+G+      A  Y  E+ P  ++ +  +         +V G+GIG+++    
Sbjct: 110 TLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAF--------LVSGFGIGNIIAAYF 161

Query: 210 ------VAGWR 214
                   GWR
Sbjct: 162 MPSFAEAYGWR 172

Length = 426

>gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791)

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)

Query: 85  GISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA 144
           G S  D+  + I    S  L+G ++GS+     AD  GR+R  +   +LY + + +T  +
Sbjct: 65  GFSKGDIGILFIAGFGSSMLFGTIVGSL-----ADKQGRKRACLTYCILY-ILSCITKHS 118

Query: 145 PDFIIMVVGRFVFGIGIGLAMHA 167
           P++ ++++GRF+ GI   L   A
Sbjct: 119 PNYKVLMIGRFLGGIATSLLFSA 141

This family consists of several eukaryotic proteins of unknown function. Length = 354

>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 13/118 (11%)

Query: 123 RRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA------APMYIAETA 176
           RR+ LI   +L++   +++ALA +F ++++ R    IGI  A HA      A + I   A
Sbjct: 73  RRKLLIGLFVLFIASHVLSALAWNFTVLLISR----IGIAFA-HAIFWSITASLAI-RVA 126

Query: 177 PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL 234
           P   + Q +SL      L MV G  +G ++   + GWR  + A    A+I  + +  L
Sbjct: 127 PAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-GWRTTFLAIGGGALITLLLLIKL 183

Length = 390

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 18/167 (10%)

Query: 91  LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIM 150
           +     G++      G ++G+     +AD LGR++ L++   +    A  ++    +   
Sbjct: 199 IPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFF 258

Query: 151 VVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
           +  R + G GIG A+     Y AE      RG+ +S   +  +  M+GG    ++   ++
Sbjct: 259 LFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLS---WLCMFWMIGGIYAAAMAWAII 315

Query: 211 A--GWRYMYGASTPL-------------AVIMGMGMWWLPASPRWLL 242
              GW +  G++                 V     + ++P SPR+ L
Sbjct: 316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFL 362

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|235151 PRK03699, PRK03699, putative transporter; Provisional

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 106 GALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAM 165
           G LI   L   + +I+  +R+LI    L ++       +    +  +  FV G+  G+ M
Sbjct: 54  GILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITM 113

Query: 166 HAAPMYIAETAPTPMRG-QLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLA 224
                 I        RG +L+    FF + GM+    I + L+     W ++Y     + 
Sbjct: 114 SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPI-IAAYLLARSIEWYWVYACIGLVY 172

Query: 225 VIM 227
           V +
Sbjct: 173 VAI 175

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
KOG0254	513	consensus Predicted transporter (major facilitator	99.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.94
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.94
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.93
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.93
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.93
TIGR00898	505	2A0119 cation transport protein.	99.93
PRK10642	490	proline/glycine betaine transporter; Provisional	99.92
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.92
PRK11663	434	regulatory protein UhpC; Provisional	99.91
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.91
TIGR00891	405	2A0112 putative sialic acid transporter.	99.91
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.91
PRK03545	390	putative arabinose transporter; Provisional	99.91
PRK12307	426	putative sialic acid transporter; Provisional	99.9
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.9
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.9
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.9
KOG2532	466	consensus Permease of the major facilitator superf	99.9
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.9
TIGR00895	398	2A0115 benzoate transport.	99.9
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.89
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.89
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.89
KOG2533	495	consensus Permease of the major facilitator superf	99.89
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.89
PRK09952	438	shikimate transporter; Provisional	99.88
TIGR00893	399	2A0114 d-galactonate transporter.	99.88
PLN00028	476	nitrate transmembrane transporter; Provisional	99.88
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.88
PRK09705	393	cynX putative cyanate transporter; Provisional	99.88
PRK15075	434	citrate-proton symporter; Provisional	99.87
PRK03699	394	putative transporter; Provisional	99.87
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.87
PRK10091	382	MFS transport protein AraJ; Provisional	99.87
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.87
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.86
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.86
PRK03893	496	putative sialic acid transporter; Provisional	99.86
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.86
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.86
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.86
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.86
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.86
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.85
TIGR00900	365	2A0121 H+ Antiporter protein.	99.85
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.85
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.85
PRK10133	438	L-fucose transporter; Provisional	99.85
PRK11043	401	putative transporter; Provisional	99.85
TIGR00805	633	oat sodium-independent organic anion transporter.	99.85
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.84
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.84
PRK10504	471	putative transporter; Provisional	99.84
PRK03633	381	putative MFS family transporter protein; Provision	99.83
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.83
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.82
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.82
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.82
PRK05122	399	major facilitator superfamily transporter; Provisi	99.81
PRK12382	392	putative transporter; Provisional	99.81
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.8
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.8
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.79
PRK10054	395	putative transporter; Provisional	99.79
PRK09874	408	drug efflux system protein MdtG; Provisional	99.79
PRK10642	490	proline/glycine betaine transporter; Provisional	99.78
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.78
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.78
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.78
PRK10489	417	enterobactin exporter EntS; Provisional	99.77
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.77
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.76
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.76
PTZ00207	591	hypothetical protein; Provisional	99.75
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.73
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.72
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.72
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.72
KOG2615	451	consensus Permease of the major facilitator superf	99.72
PRK11010	491	ampG muropeptide transporter; Validated	99.71
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.71
TIGR00901	356	2A0125 AmpG-related permease.	99.71
PRK11902	402	ampG muropeptide transporter; Reviewed	99.7
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.7
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.69
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.69
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.69
PRK15011	393	sugar efflux transporter B; Provisional	99.68
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.67
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.66
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.62
PRK09528	420	lacY galactoside permease; Reviewed	99.61
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.61
PRK15011	393	sugar efflux transporter B; Provisional	99.6
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.59
PRK09528	420	lacY galactoside permease; Reviewed	99.58
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.58
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.56
PRK05122	399	major facilitator superfamily transporter; Provisi	99.56
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.55
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.54
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.54
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.54
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.51
PRK12382	392	putative transporter; Provisional	99.51
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.5
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.5
PRK03699	394	putative transporter; Provisional	99.49
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.48
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.48
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.48
TIGR00891	405	2A0112 putative sialic acid transporter.	99.46
PRK09874	408	drug efflux system protein MdtG; Provisional	99.46
TIGR00893	399	2A0114 d-galactonate transporter.	99.46
PRK09952	438	shikimate transporter; Provisional	99.46
PRK03633	381	putative MFS family transporter protein; Provision	99.45
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.43
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.42
PRK09705	393	cynX putative cyanate transporter; Provisional	99.42
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.42
PRK03545	390	putative arabinose transporter; Provisional	99.42
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.42
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.41
PRK03893	496	putative sialic acid transporter; Provisional	99.41
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.41
KOG3626	735	consensus Organic anion transporter [Secondary met	99.4
PRK10489	417	enterobactin exporter EntS; Provisional	99.39
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.38
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.37
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.37
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.37
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.37
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.37
PRK11010	491	ampG muropeptide transporter; Validated	99.34
TIGR00895	398	2A0115 benzoate transport.	99.34
PRK12307	426	putative sialic acid transporter; Provisional	99.33
PRK11663	434	regulatory protein UhpC; Provisional	99.33
PRK10054	395	putative transporter; Provisional	99.32
TIGR00898	505	2A0119 cation transport protein.	99.32
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.32
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.31
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.3
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.29
PRK10504	471	putative transporter; Provisional	99.29
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.29
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.29
TIGR00900	365	2A0121 H+ Antiporter protein.	99.28
PRK09669	444	putative symporter YagG; Provisional	99.27
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.27
PRK15075	434	citrate-proton symporter; Provisional	99.26
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.26
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.26
PLN00028	476	nitrate transmembrane transporter; Provisional	99.25
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.25
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.24
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.24
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.23
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.22
KOG2563	480	consensus Permease of the major facilitator superf	99.22
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.2
PF13347	428	MFS_2: MFS/sugar transport protein	99.2
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.2
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.19
PRK10091	382	MFS transport protein AraJ; Provisional	99.19
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.18
PRK09848	448	glucuronide transporter; Provisional	99.18
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.18
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.18
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.15
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.15
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.14
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.14
KOG0569	485	consensus Permease of the major facilitator superf	99.14
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.14
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.14
PRK11902	402	ampG muropeptide transporter; Reviewed	99.13
PRK10429	473	melibiose:sodium symporter; Provisional	99.12
PRK10429	473	melibiose:sodium symporter; Provisional	99.09
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.07
PRK11462	460	putative transporter; Provisional	99.07
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.07
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.07
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.07
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.04
PRK10133	438	L-fucose transporter; Provisional	99.04
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.03
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.03
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.03
TIGR00901	356	2A0125 AmpG-related permease.	99.02
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.0
PRK09669	444	putative symporter YagG; Provisional	99.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.98
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.95
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.91
KOG3762	618	consensus Predicted transporter [General function	98.89
PF13347	428	MFS_2: MFS/sugar transport protein	98.88
PRK11043	401	putative transporter; Provisional	98.87
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.87
COG0477	338	ProP Permeases of the major facilitator superfamil	98.87
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.85
COG2211	467	MelB Na+/melibiose symporter and related transport	98.82
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.82
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.81
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.81
PRK09848	448	glucuronide transporter; Provisional	98.8
KOG2532	466	consensus Permease of the major facilitator superf	98.8
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.8
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.79
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.78
COG2211	467	MelB Na+/melibiose symporter and related transport	98.77
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.76
PRK11462	460	putative transporter; Provisional	98.72
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.71
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.7
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.69
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.66
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.63
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.63
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.59
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.53
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.5
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.5
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.47
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.43
PTZ00207	591	hypothetical protein; Provisional	98.41
KOG0254	513	consensus Predicted transporter (major facilitator	98.4
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.33
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.27
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.25
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.23
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.21
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.2
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.16
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.08
KOG2615	451	consensus Permease of the major facilitator superf	98.05
PF12832	77	MFS_1_like: MFS_1 like family	97.98
KOG2533	495	consensus Permease of the major facilitator superf	97.97
KOG0637	498	consensus Sucrose transporter and related proteins	97.94
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.91
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.87
PRK03612	521	spermidine synthase; Provisional	97.85
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.82
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.78
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.68
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.51
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.46
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.4
COG3202	509	ATP/ADP translocase [Energy production and convers	97.39
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.36
KOG3810	433	consensus Micronutrient transporters (folate trans	97.36
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.14
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.01
KOG2563	480	consensus Permease of the major facilitator superf	97.0
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.95
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.9
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.86
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.71
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.64
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.62
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.3
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.38
KOG3762	618	consensus Predicted transporter [General function	95.36
KOG1330	493	consensus Sugar transporter/spinster transmembrane	95.32
KOG2325	488	consensus Predicted transporter/transmembrane prot	94.83
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.66
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	94.13
COG4262	508	Predicted spermidine synthase with an N-terminal m	94.07
KOG0637	498	consensus Sucrose transporter and related proteins	93.56
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.53
KOG3097	390	consensus Predicted membrane protein [Function unk	92.88
TIGR00805	633	oat sodium-independent organic anion transporter.	92.79
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	92.25
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	91.03
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	88.66
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	86.11
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	85.24
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	85.24
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	84.34
KOG3880	409	consensus Predicted small molecule transporter inv	84.24
KOG3880	409	consensus Predicted small molecule transporter inv	83.68
PRK10263	1355	DNA translocase FtsK; Provisional	83.02
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	82.35
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	82.25
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	80.66
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	80.56
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	80.31

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.3e-30  Score=240.89  Aligned_cols=286  Identities=28%  Similarity=0.460  Sum_probs=232.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCC-Ccccc--CCh----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018453           48 SAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSG-ISWYD--LSS----VEIGLITSGSLYGALIGSILAFNIADI  120 (355)
Q Consensus        48 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~s~----~~~~~~~~~~~~~~~~~~~~~g~l~dr  120 (355)
                      ++.....+..+++.+.+||..+.+++....+.+-.... .+.+|  .++    ..++.+++++.+|.++|+++.++++||
T Consensus         7 ~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~   86 (485)
T KOG0569|consen    7 RRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADR   86 (485)
T ss_pred             HHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445556777777999999999988766554210000 01133  333    456778899999999999999999999


Q ss_pred             hccHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH
Q 018453          121 LGRRRELILAALLYLVGALVTALA---PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV  197 (355)
Q Consensus       121 ~Grr~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~  197 (355)
                      +|||..++++.++..++.++..++   +.+.+++++|++.|+..|......+.|+.|..|.+.||....+.+.+..+|.+
T Consensus        87 ~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~l  166 (485)
T KOG0569|consen   87 FGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGIL  166 (485)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHH
Confidence            999999999999988888777654   67899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-hhccccchhHHHHhHHHHHHHHHHHHhhcccchhHHHH-hhccccCchhhhHHHHHHHHHHHhCCCCCCCc
Q 018453          198 GGYGIGSL-LVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLL-CAMKRKGDMQDLRESAISCLCRLRGQSIGDSA  275 (355)
Q Consensus       198 ~~~~i~~~-l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (355)
                      ++..++.. +.++...|.+.+.+.++++++.++...++||||||+.. ++         +++||++.++++++++++++.
T Consensus       167 l~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~---------~~~~A~~sl~~y~G~~~~~~~  237 (485)
T KOG0569|consen  167 LGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKG---------DEEEARKALKFYRGKEDVEAE  237 (485)
T ss_pred             HHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcC---------CHHHHHHHHHHHhCCCcchhH
Confidence            99777644 44555579999999999999999999999999999987 44         679999999999999887655


Q ss_pred             hhHHHHHHHhhccccccccchhhhhhccc-chhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhccccc
Q 018453          276 PTEVDEILTELSYVGEDKEVSLREVFHGK-CLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLM  343 (355)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (355)
                      .++..++.++.+ .+++++.+++++++++ .++++.+++.+.+.++++|.+.+.+|.+.+++++|-+.+
T Consensus       238 ~e~~~~e~~~~~-~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~  305 (485)
T KOG0569|consen  238 IEEMLREIEEEE-LEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPE  305 (485)
T ss_pred             HHHHHHHHHHhc-cccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHH
Confidence            444433333221 1234678899999997 556888999999999999999999999999999997653

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=1.4e-28  Score=240.92  Aligned_cols=274  Identities=17%  Similarity=0.212  Sum_probs=217.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 018453           48 SAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREL  127 (355)
Q Consensus        48 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~  127 (355)
                      +..|.++++++++.+..+++...++..+|.+..+       ++++..+.+++.+++.+|.+++.+++|+++||+|||+.+
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~-------~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l  235 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKD-------LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL  235 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            4456666777888888899998899999988775       899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018453          128 ILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV  207 (355)
Q Consensus       128 ~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  207 (355)
                      +++.++.+++.++++++++++.++++|++.|++.|+..+....++.|++|+++||+.+++..++..+|.++++.++..+.
T Consensus       236 ii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       236 LICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998887665


Q ss_pred             ccc------------cchhHHHHhHHHHHHHHHHHHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCC-
Q 018453          208 DLV------------AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDS-  274 (355)
Q Consensus       208 ~~~------------~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  274 (355)
                      ...            .+||+.+++.++++++.++..+++||||+|+..++         +.+++.++++++++.+.... 
T Consensus       316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~g---------r~~eA~~iL~~i~~~n~~~~~  386 (742)
T TIGR01299       316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENG---------KHDEAWMILKLIHDTNMRAKG  386 (742)
T ss_pred             HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCC---------CHHHHHHHHHHHhcCCCCCcC
Confidence            321            26999999988888888777888999999998876         56888899998876543211 


Q ss_pred             ch-hHH--HHHHHhh------ccccccc-----------------cchhhhhhcccchhHHHHHHHHHHHHhhhhhhHHH
Q 018453          275 AP-TEV--DEILTEL------SYVGEDK-----------------EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVL  328 (355)
Q Consensus       275 ~~-~~~--~~~~~~~------~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (355)
                      .+ ...  ++.+...      +.++...                 ...++++|+.+.+++++++.+++ +....+.+++.
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~w-f~~~~~yygl~  465 (742)
T TIGR01299       387 HPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVW-FTLSFGYYGLS  465 (742)
T ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            11 100  0100000      0000000                 01356677776767776655555 55566799999


Q ss_pred             HhHHHHHHHh
Q 018453          329 YYAASILQDF  338 (355)
Q Consensus       329 ~~~~~~~~~~  338 (355)
                      .|+|.+++..
T Consensus       466 ~w~P~~~~~~  475 (742)
T TIGR01299       466 VWFPDMIKHL  475 (742)
T ss_pred             HHHHHHHHHH
Confidence            9999998764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=4.8e-28  Score=232.52  Aligned_cols=286  Identities=40%  Similarity=0.590  Sum_probs=227.9

Q ss_pred             chHHHHHHHHHHHHHHHHhhhh--hcccccccccccCCCCCCCccccCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018453           46 SVSAAILPFLFPALGGLLYGYD--IGSTSCATISIESPTLSGISWYDLSS--VEIGLITSGSLYGALIGSILAFNIADIL  121 (355)
Q Consensus        46 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~  121 (355)
                      .........+...++.+.+|++  .+...+....+.+......  ...+.  .+.+++.+...++..+++++.|+++|++
T Consensus        39 ~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~--~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~  116 (513)
T KOG0254|consen   39 ISPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYD--LSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI  116 (513)
T ss_pred             CceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344555667778888888886  6667777776665322211  12222  4669999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 018453          122 GRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYG  201 (355)
Q Consensus       122 Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~  201 (355)
                      |||+.++++.++..++.++.++++|+++++++|++.|+|.|....+.+.|++|..|++.||...++.+....+|..++..
T Consensus       117 GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~  196 (513)
T KOG0254|consen  117 GRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYC  196 (513)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999955


Q ss_pred             HHHHhhccccchhHHHHhHHHHHHHHHHHHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHH
Q 018453          202 IGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDE  281 (355)
Q Consensus       202 i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (355)
                      ++....+...+||..+.+..+++++..+..+++||+|+|+.+++         +.+++++.++++++....+. ..+.++
T Consensus       197 ~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g---------~~~~a~~~l~~l~g~~~~~~-~~~~~~  266 (513)
T KOG0254|consen  197 INYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKG---------RLEEAKRSLKRLRGLSPEDV-EVELEL  266 (513)
T ss_pred             HhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcC---------ChHHHHHHHHHHhCCCCcch-HHHHHH
Confidence            55554332138999999999998887777888999999999876         77999999999998542222 222222


Q ss_pred             HH-Hhh-ccccccccchhhhhhcccchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhccccc
Q 018453          282 IL-TEL-SYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLM  343 (355)
Q Consensus       282 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (355)
                      .+ +.. +....+.+..++++++...+++..+++.+..++|++|.+.+.+|.+++|+..+....
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~  330 (513)
T KOG0254|consen  267 LKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSD  330 (513)
T ss_pred             HHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCc
Confidence            22 111 111122233577788866888999999999999999999999999999999987743

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.96  E-value=1.1e-26  Score=222.82  Aligned_cols=276  Identities=20%  Similarity=0.218  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Q 018453           51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA  130 (355)
Q Consensus        51 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  130 (355)
                      +.+++++.++.+.++++...++...+.+..+...  ++.+.+..+.+++.+...++.++++++.|+++||+|||+.+.++
T Consensus        15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~   92 (502)
T TIGR00887        15 FRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYH--GKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGME   92 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            3344777888999999999999888876542111  11356677889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018453          131 ALLYLVGALVTALAPD------FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGS  204 (355)
Q Consensus       131 ~~l~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  204 (355)
                      .++.+++.++.+++++      ++.++++|++.|++.|...+..+.++.|++|+++|++++++.+....+|.++++.++.
T Consensus        93 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887        93 LIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888765      7889999999999999999999999999999999999999999999999999998887


Q ss_pred             Hhhc----------------------cccchhHHHHhHHHHHHHHHHHHhhcccchhHHHHhhccccCchhhhHHHHHHH
Q 018453          205 LLVD----------------------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISC  262 (355)
Q Consensus       205 ~l~~----------------------~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~  262 (355)
                      .+..                      ...+||+.+.+.++++++.++..+++||||+|+..+++        +++++.+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~--------~~~~a~~~  244 (502)
T TIGR00887       173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAK--------DVEQAASD  244 (502)
T ss_pred             HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCc--------chHHHHHH
Confidence            6532                      01279999998888888877777889999999987651        11345555


Q ss_pred             HHHHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcccchh---HHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhc
Q 018453          263 LCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLK---ALIIGAGLVLFQQITGQPSVLYYAASILQDFL  339 (355)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (355)
                      +++++..+.+++ .++.++.+++    ++..+.+++++++++..+   +..+++...++.+....+++..|.|.++++.+
T Consensus       245 ~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G  319 (502)
T TIGR00887       245 MSAVLQVKIEAE-PDEVEKASTA----VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIG  319 (502)
T ss_pred             HHHHhccccccC-cccccchhcc----ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHc
Confidence            666554322211 1111111111    111223577887643221   23333333333333445677788999998876


Q ss_pred             cc
Q 018453          340 QP  341 (355)
Q Consensus       340 ~~  341 (355)
                      .+
T Consensus       320 ~~  321 (502)
T TIGR00887       320 YS  321 (502)
T ss_pred             CC
Confidence            54

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.94  E-value=2.5e-24  Score=205.50  Aligned_cols=275  Identities=30%  Similarity=0.499  Sum_probs=199.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccCCCCCC-CccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 018453           50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSG-ISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI  128 (355)
Q Consensus        50 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~  128 (355)
                      ....++.+.++.+..+++...+++..+.+.+..... ..+++++..+.+++.+++.++.++++++.|+++||+|||++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~   89 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK   89 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            344446667889999999999999888776642221 1224889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Q 018453          129 LAALLYLVGALVTALA------------PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGM  196 (355)
Q Consensus       129 ~~~~l~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~  196 (355)
                      ++.++.+++.++.+++            ..++.++++|++.|++.|...+....+++|++|+++||+++++.+.+..+|.
T Consensus        90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~  169 (479)
T PRK10077         90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ  169 (479)
T ss_pred             HHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHH
Confidence            9999999888877753            2256788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc-------cccchhHHHHhHHHHHHHHHHHHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCC
Q 018453          197 VGGYGIGSLLVD-------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQ  269 (355)
Q Consensus       197 ~~~~~i~~~l~~-------~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (355)
                      ++++.++..+..       ...+||+.|++.+++.++..+..+++||+|+++..++         +.+++++..+++++.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~---------~~~~~~~~~~~~~~~  240 (479)
T PRK10077        170 LVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRG---------KQEQAEGILRKIMGN  240 (479)
T ss_pred             HHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcC---------CHHHHHHHHHHHcCC
Confidence            999887765532       1238999999988887777666777999999876543         234455555555432


Q ss_pred             CCCCCchhHHHHHHHhhccccccccchhhhhhcccchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhccc
Q 018453          270 SIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQP  341 (355)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (355)
                      ...   .+..++..+...+   + ....+..+. ........++....+++..+.+.+.+|.|+++++.+.+
T Consensus       241 ~~~---~~~~~~~~~~~~~---~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~  304 (479)
T PRK10077        241 TLA---TQALQEIKHSLDH---G-RKTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAS  304 (479)
T ss_pred             hhH---HHHHHHHHHHHHH---h-hhhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCC
Confidence            211   1111111111100   0 001111111 11223344444556667777888889999999887654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.94  E-value=3.1e-24  Score=204.00  Aligned_cols=285  Identities=33%  Similarity=0.538  Sum_probs=200.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCC-CCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 018453           48 SAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLS-GISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRE  126 (355)
Q Consensus        48 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~  126 (355)
                      +..+...+++.++.+..+++........+.+..+... ....-+.+..+.+++.+++.++..+++++.|+++||+|||+.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~  103 (481)
T TIGR00879        24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS  103 (481)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence            3344444666677788888888888888877654110 000112458999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018453          127 LILAALLYLVGALVTALAP---DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIG  203 (355)
Q Consensus       127 ~~~~~~l~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  203 (355)
                      ++++.++..++.+++.+..   +++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.++++.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999998886543   4558999999999999999999999999999999999999999999999999999998


Q ss_pred             ---HHhhccccchhHHHHhHHHHHHHHHHHHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCch-hHH
Q 018453          204 ---SLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAP-TEV  279 (355)
Q Consensus       204 ---~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  279 (355)
                         ....... +||+.|++.++..++.++..+++||+|+++..++         +.++.++..++.++....+... ...
T Consensus       184 ~~~~~~~~~~-~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (481)
T TIGR00879       184 SGKVSLNNTL-GWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKG---------RVEEARKSLARLRGTSGEDKELLDEL  253 (481)
T ss_pred             HHhhcCCCCc-cHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcC---------ChHHHHHHHHHHhCCCCCcHHHHHHH
Confidence               5554555 9999999977777766667777899998765433         1122333333333322211110 101


Q ss_pred             HHHHHhhccccccccchhhhhhccc--chhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhcccc
Q 018453          280 DEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPL  342 (355)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (355)
                      +......+.+.+..+..+.++++..  ..++.++...+.++....+.+.+.+|.|.++++.+.+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  318 (481)
T TIGR00879       254 ELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST  318 (481)
T ss_pred             HHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc
Confidence            1101110001111122244444432  24566666667777777777788899999988877554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.93  E-value=3.8e-24  Score=200.19  Aligned_cols=182  Identities=20%  Similarity=0.247  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Q 018453           51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA  130 (355)
Q Consensus        51 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  130 (355)
                      |...++++++.+..+++....+...|.+.++       +|++..+.+++.+++.+++.+++++.|+++||+|||+.+..+
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~   79 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKD-------LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGI   79 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhh-------cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHH
Confidence            4444666777778889999999999987776       899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 018453          131 ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL-  209 (355)
Q Consensus       131 ~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~-  209 (355)
                      .++.+++.++.+++++++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|.++++++++.+.+. 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~  159 (412)
T TIGR02332        80 MVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD  159 (412)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988642 


Q ss_pred             ----ccchhHHHHhHHHHHHHHH-HHHhhcccchh
Q 018453          210 ----VAGWRYMYGASTPLAVIMG-MGMWWLPASPR  239 (355)
Q Consensus       210 ----~~~w~~~~~~~~~~~~~~~-~~~~~~~esp~  239 (355)
                          ..|||++|++.++++++.. +.++++||+|+
T Consensus       160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       160 GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence                2389999999888876644 45566889885

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.4e-25  Score=199.48  Aligned_cols=266  Identities=15%  Similarity=0.106  Sum_probs=206.9

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Q 018453           51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA  130 (355)
Q Consensus        51 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  130 (355)
                      +-+.+.+.+++..+++.....+.+.|.+.++       .++|.+|.|++.+.+.+.|.++.++.|.++||.+.|+.+..+
T Consensus        28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~-------~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g  100 (448)
T COG2271          28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIED-------GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence            4455778899999999999999999999987       789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH--HHhhc
Q 018453          131 ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIG--SLLVD  208 (355)
Q Consensus       131 ~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~--~~l~~  208 (355)
                      +++.++.+++.++.++.+.+.++.++.|..+|...|.+...+..|+|+++||+..++++++.++|+.+.|++.  +.+..
T Consensus       101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~  180 (448)
T COG2271         101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF  180 (448)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999  78877


Q ss_pred             cccchhHHHHhHHHHHHHHH-HHHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhc
Q 018453          209 LVAGWRYMYGASTPLAVIMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELS  287 (355)
Q Consensus       209 ~~~~w~~~~~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (355)
                      +. +||..|++.++++++.. +.++..+|+|+-.-...          .||       .+++..+     ..       +
T Consensus       181 ~~-~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~----------ie~-------~~~d~~e-----~~-------~  230 (448)
T COG2271         181 HG-GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP----------IEE-------YRGDPLE-----IY-------E  230 (448)
T ss_pred             cc-chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC----------HHH-------hhcCchh-----hh-------h
Confidence            76 99999999999988754 45566889987322111          111       1111100     00       0


Q ss_pred             cccccccchhhhhhcccch-hHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhccccchhhhhhhhhc
Q 018453          288 YVGEDKEVSLREVFHGKCL-KALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLMQHGSQFYLAY  353 (355)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (355)
                      ++++++.-+.++++.+..+ .+.+..+.+.-+.....-+++..|.|.|+.+...-...+.+..+.+|
T Consensus       231 ~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lf  297 (448)
T COG2271         231 EEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLF  297 (448)
T ss_pred             hhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence            0111111444454433322 24444444444444556899999999999887655555555554443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=8.7e-24  Score=190.26  Aligned_cols=244  Identities=23%  Similarity=0.268  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Q 018453           51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA  130 (355)
Q Consensus        51 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  130 (355)
                      +..++.+.++.|..+.........+|.+.++       +|+|....|+..++|.+++.++.++...+.||+.||+.++..
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~d-------l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~   84 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAAD-------LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGL   84 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHH
Confidence            4444667888899999999999999999997       999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018453          131 ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV  210 (355)
Q Consensus       131 ~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  210 (355)
                      +.+.+++.+++++++|++.++++|++.|++.|..++....+..+..|+++|++++++...+..++.++|.+++.++-+..
T Consensus        85 l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~  164 (394)
T COG2814          85 LALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF  164 (394)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cchhHHHHhHHHHHHHHHHH-HhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccc
Q 018453          211 AGWRYMYGASTPLAVIMGMG-MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYV  289 (355)
Q Consensus       211 ~~w~~~~~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (355)
                       |||++|++.++++++.++. +..+|  |+...                                             +.
T Consensus       165 -GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~---------------------------------------------~~  196 (394)
T COG2814         165 -GWRATFLAIAVLALLALLLLWKLLP--PSEIS---------------------------------------------GS  196 (394)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHhCC--CccCC---------------------------------------------CC
Confidence             9999999999998886655 45577  22000                                             00


Q ss_pred             cccccchhhhhhcccchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhccccchhhhhhhhhc
Q 018453          290 GEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLMQHGSQFYLAY  353 (355)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (355)
                      .+....+..+.+++|..+..++...+...    |.+....|...++++...-..+...-..+.|
T Consensus       197 ~~~~~~~~~~~l~~p~v~~~l~~t~l~~~----g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~  256 (394)
T COG2814         197 LPGPLRTLLRLLRRPGVLLGLLATFLFMT----GHFALYTYIRPFLESVAGFSVSAVSLVLLAF  256 (394)
T ss_pred             CCcchhHHHHHhcCchHHHHHHHHHHHHc----chhhhHHhHHHHHHHccCCCHhHHHHHHHHH
Confidence            11222345677888776666665555554    4455557777777776654444444444433

>TIGR00898 2A0119 cation transport protein

Probab=99.93  E-value=7.8e-24  Score=203.46  Aligned_cols=227  Identities=24%  Similarity=0.386  Sum_probs=177.9

Q ss_pred             cccccccCCCCCCCccccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 018453           73 CATISIESPTLSGISWYDLS---SVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFII  149 (355)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~  149 (355)
                      ...+.+.++       ++++   ..+.+++.+++.+|.+++.++.|+++||+|||++++++.++..++.++.+++++++.
T Consensus       110 ~~~~~i~~e-------~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~  182 (505)
T TIGR00898       110 TFSSTIVTE-------WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTV  182 (505)
T ss_pred             cccccEEEE-------ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            344555554       7888   899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHH
Q 018453          150 MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM  229 (355)
Q Consensus       150 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~  229 (355)
                      ++++|++.|++.+...+....++.|++|+++|+.+.++...+..+|.++++.++..+.    +||+.|++.++++++..+
T Consensus       183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~  258 (505)
T TIGR00898       183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFL  258 (505)
T ss_pred             HHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987663    599999999988888777


Q ss_pred             HHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcccchhHH
Q 018453          230 GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL  309 (355)
Q Consensus       230 ~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (355)
                      ..+++||+|+|+..++         +.+++.+.+++..+.+......+......++ +..++.++.+++++++++..+..
T Consensus       259 ~~~~~~esp~~l~~~~---------~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~  328 (505)
T TIGR00898       259 LSWFVPESPRWLISQG---------RIEEALKILQRIAKINGKKLPAEVLSLSLEK-DLSSSKKQYSFLDLFRTPNLRKT  328 (505)
T ss_pred             HHHhcCCChHHHHHCC---------CHHHHHHHHHHHHHHcCCCCCHHHHhhhhhh-hhhhccCCCcHHHHhCChHHHHH
Confidence            7788999999987765         3455556665554333222111111111011 11111224577889998877777


Q ss_pred             HHHHHHHHHHh
Q 018453          310 IIGAGLVLFQQ  320 (355)
Q Consensus       310 ~~~~~~~~~~~  320 (355)
                      .+...+.++..
T Consensus       329 ~~~~~~~~~~~  339 (505)
T TIGR00898       329 TLCLMMLWFTT  339 (505)
T ss_pred             HHHHHHHHHHH
Confidence            66665555543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.92  E-value=1.1e-22  Score=194.44  Aligned_cols=181  Identities=20%  Similarity=0.314  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHhhhhhcccccccccccCCCCCCCcccc--CChh--HHHH--HHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 018453           54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYD--LSSV--EIGL--ITSGSLYGALIGSILAFNIADILGRRREL  127 (355)
Q Consensus        54 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~--~~~~--~~~~~~~~~~~~~~~~g~l~dr~Grr~~~  127 (355)
                      .+.+.++.++.+++....+...+.+.++       ++  .++.  ..+.  +.++.++++.+++++.|+++||+|||+++
T Consensus        18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l   90 (490)
T PRK10642         18 ITAASLGNAMEWFDFGVYGFVAYALGKV-------FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKIL   90 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            3556778889999999988888887765       33  2221  1222  24778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHH--------HHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH
Q 018453          128 ILAALLYLVGALVTALAPDFII--------MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGG  199 (355)
Q Consensus       128 ~~~~~l~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~  199 (355)
                      .++.++++++++++++++++..        ++++|+++|++.|+.++....++.|++|+++||++.++...+..+|.+++
T Consensus        91 ~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg  170 (490)
T PRK10642         91 AITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLG  170 (490)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999764        78999999999999999999999999999999999999998888888888


Q ss_pred             HHHHHHhhc--------cccchhHHHHhHHHHHHHHHHHHhhcccchhHHH
Q 018453          200 YGIGSLLVD--------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLL  242 (355)
Q Consensus       200 ~~i~~~l~~--------~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~  242 (355)
                      +.+...+..        .. |||+.|++.++++++.+++..++||+|+|..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~-gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~  220 (490)
T PRK10642        171 AGVVVLISTIVGEANFLDW-GWRIPFFIALPLGIIGLYLRHALEETPAFQQ  220 (490)
T ss_pred             HHHHHHHHHhcCHHHhcCc-cHHHHHHHHHHHHHHHHHHHHcCCCChhHHH
Confidence            876654432        33 8999999987766666656667899998754

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.92  E-value=6.5e-29  Score=235.30  Aligned_cols=275  Identities=34%  Similarity=0.563  Sum_probs=215.6

Q ss_pred             HHHHHHHHhhhhhcccccccccccCCCCCC---Cc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q 018453           56 FPALGGLLYGYDIGSTSCATISIESPTLSG---IS-WYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA  131 (355)
Q Consensus        56 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  131 (355)
                      ++.++.+..|++...++...+.........   .+ ..+.+..+.+++.+...+|..+|+++.|.++||+|||+.+.++.
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~   83 (451)
T PF00083_consen    4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISA   83 (451)
T ss_pred             eeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence            345666888888877766665554211111   00 01113467899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018453          132 LLYLVGALVTALAP---DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (355)
Q Consensus       132 ~l~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  208 (355)
                      ++..++.++.++++   +++.+.++|++.|++.|+..+..+.++.|..|+++|++..++.+.+..+|.+++..++..+..
T Consensus        84 ~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~  163 (451)
T PF00083_consen   84 LLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY  163 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999   999999999999999999999999999999999999999999999999999999888765533


Q ss_pred             cc--cchhHHHHhHHHHHHHHHHHHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhh
Q 018453          209 LV--AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTEL  286 (355)
Q Consensus       209 ~~--~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (355)
                      ..  .+||+.+++.++++++..+..+++||||+|+.+++         +.+|+++.++++++++..+++   .+++.++.
T Consensus       164 ~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~---------~~~~A~~~l~~~~~~~~~~~~---~~~~~~~~  231 (451)
T PF00083_consen  164 YSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKG---------RDEEAEKVLRKLRGKEIEDEE---IEEIKAEK  231 (451)
T ss_pred             ccccccccccccccccccccccccccccccccceecccc---------ccccccccccccccccccccc---cccccccc
Confidence            22  25999999999998887777788999999998877         557888888887666443222   11111111


Q ss_pred             ccccccccchhhhhhcccc-hhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhccccc
Q 018453          287 SYVGEDKEVSLREVFHGKC-LKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLM  343 (355)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (355)
                      ++ .++.+..++++++++. ++++.+.+.+.+++++++.+.+.+|.+.++++.+.+..
T Consensus       232 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~  288 (451)
T PF00083_consen  232 KE-SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS  288 (451)
T ss_pred             cc-ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence            11 1112267888888864 67888888899999999999999999999988776643

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.91  E-value=4.9e-23  Score=194.12  Aligned_cols=178  Identities=14%  Similarity=0.110  Sum_probs=157.1

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~  134 (355)
                      ....++.+...++....+..+|.+.++       +|++..+.+++.+.+.+++.+++++.|+++||+|||+.+.++.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~   98 (434)
T PRK11663         26 ITMYLGYALFYFTRKSFNAAMPEMLAD-------LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT   98 (434)
T ss_pred             HHHHHHHHHHHHhhhhHHHhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence            444555666666776778888888876       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 018453          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR  214 (355)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  214 (355)
                      +++.++.+++++++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+..+|.++++.+.+.+.+.. +||
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~  177 (434)
T PRK11663         99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY-GWR  177 (434)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHH
Confidence            9999999999999999999999999999888999999999999999999999999999999999999999998877 899


Q ss_pred             HHHHhHHHHHHHHH-HHHhhcccchhH
Q 018453          215 YMYGASTPLAVIMG-MGMWWLPASPRW  240 (355)
Q Consensus       215 ~~~~~~~~~~~~~~-~~~~~~~esp~~  240 (355)
                      +.|++.++++++.. +..++++|+|++
T Consensus       178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~  204 (434)
T PRK11663        178 YGMMIAGIIAIVVGLFLCWRLRDKPQA  204 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHhh
Confidence            99999887766543 444557887753

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.91  E-value=5.5e-23  Score=189.02  Aligned_cols=215  Identities=16%  Similarity=0.044  Sum_probs=162.5

Q ss_pred             cccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 018453           71 TSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIM  150 (355)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~  150 (355)
                      .++.+|.+.++       +|++..+.|++.+.+.+++.+++++.|+++||+|||++++.+......+.+.....++++.+
T Consensus        10 ~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903        10 FSPVLSLVAED-------IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             HHhhHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            45667777775       89999999999999999999999999999999999988765555554444333333789999


Q ss_pred             HHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHH-
Q 018453          151 VVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM-  229 (355)
Q Consensus       151 ~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~-  229 (355)
                      +++|++.|++.+. .......+.|++|+++|++++++.+.+..+|.++++++++.+.+.. |||+.|++.++++++..+ 
T Consensus        83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-gWr~~f~~~~~l~~~~~~~  160 (368)
T TIGR00903        83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-GLQLLIIPIAAVAAAGIIL  160 (368)
T ss_pred             HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHH
Confidence            9999999999986 4555666799999999999999999999999999999999998876 999999998887766544 


Q ss_pred             HHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcccchhHH
Q 018453          230 GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL  309 (355)
Q Consensus       230 ~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (355)
                      .++++||+|++.   +     +.                  ..   .   .+           ...+++++++++..+..
T Consensus       161 ~~~~lp~~p~~~---~-----~~------------------~~---~---~~-----------~~~~~~~ll~~~~~~~~  197 (368)
T TIGR00903       161 VLAALPALPFQA---A-----EG------------------FG---F---KD-----------AVKEFGALAGRKDLWII  197 (368)
T ss_pred             HHHHcCCCCCCC---C-----CC------------------cc---h---HH-----------HHHHHHHHHcChhHHHH
Confidence            455689887531   0     00                  00   0   00           00135678887665544


Q ss_pred             HHHHHHHHHHhhhhhhHHHHhHHHHHHHhccc
Q 018453          310 IIGAGLVLFQQITGQPSVLYYAASILQDFLQP  341 (355)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (355)
                      .+.    .+......+.+..|+|+++++.+.+
T Consensus       198 ~~~----~~~~~~~~~~~~~wlp~~L~~~g~s  225 (368)
T TIGR00903       198 GAI----LGFGVALFDNLAIWLEAALRPAGLE  225 (368)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            443    3333445778889999999886644

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.91  E-value=4.6e-22  Score=185.40  Aligned_cols=184  Identities=24%  Similarity=0.363  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Q 018453           51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA  130 (355)
Q Consensus        51 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  130 (355)
                      |.....+.++.+..+++....++..+.+.++       +|++..+.+++.+++.++..+++++.|+++||+|||+.++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~   83 (405)
T TIGR00891        11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGE-------FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTS   83 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            4444666777888888888889999988776       899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018453          131 ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV  210 (355)
Q Consensus       131 ~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  210 (355)
                      .++.+++.++.++.++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|.++++.+++.+.+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  163 (405)
T TIGR00891        84 IVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW  163 (405)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888665


Q ss_pred             c-chhHHHHhHHHHHHHHHHHHhhcccchhHH
Q 018453          211 A-GWRYMYGASTPLAVIMGMGMWWLPASPRWL  241 (355)
Q Consensus       211 ~-~w~~~~~~~~~~~~~~~~~~~~~~esp~~l  241 (355)
                      + +||+.|++.+++.++..+....+||++++.
T Consensus       164 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  195 (405)
T TIGR00891       164 GDGWRALFFISILPIIFALWLRKNIPEAEDWK  195 (405)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence            2 499999987766666655556678876643

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.91  E-value=5.7e-22  Score=186.76  Aligned_cols=182  Identities=19%  Similarity=0.260  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHH---HHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 018453           53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLI---TSGSLYGALIGSILAFNIADILGRRRELIL  129 (355)
Q Consensus        53 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~  129 (355)
                      .++.++++.+..+++....+...|.+.++..+    .+.+..+.+..   .+..+++..++++++|+++||+|||+.+.+
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYVYSFCSLYFAHIFFP----SGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            33566678888899999888888887764111    03445544443   444555556999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 018453          130 AALLYLVGALVTALAPDFI--------IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYG  201 (355)
Q Consensus       130 ~~~l~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~  201 (355)
                      +.++.+++++++++++++.        .++++|+++|++.|..++....++.|++|+++||+..++.+.+...|.++++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888753        58899999999999999999999999999999999999999888888888887


Q ss_pred             HHHHhhc--------cccchhHHHHhHHHHHHHHHHHHhhcccchh
Q 018453          202 IGSLLVD--------LVAGWRYMYGASTPLAVIMGMGMWWLPASPR  239 (355)
Q Consensus       202 i~~~l~~--------~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~  239 (355)
                      +...+..        .. |||+.|++.++++++..+....+||+|+
T Consensus       179 ~~~~~~~~~~~~~~~~~-gWr~~F~i~~~~~ll~~~~~~~~~e~~~  223 (432)
T PRK10406        179 VVVVLQQTLEDAELREW-GWRIPFALGAVLAVVALWLRRQLDETSQ  223 (432)
T ss_pred             HHHHHHHhCCHHHHhcc-chHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            6554432        33 9999999988877766554445666653

>PRK03545 putative arabinose transporter; Provisional

Probab=99.91  E-value=3.2e-22  Score=186.04  Aligned_cols=172  Identities=20%  Similarity=0.276  Sum_probs=148.3

Q ss_pred             HHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 018453           58 ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVG  137 (355)
Q Consensus        58 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~  137 (355)
                      .++.+..........+.+|.+.++       +|.+..+.+++.+.+.+++.+++++.|.+.||+|||+.+..+.++..++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   87 (390)
T PRK03545         15 ALAAFIFNTTEFVPVGLLSDIAQS-------FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS   87 (390)
T ss_pred             HHHHHHHHhHHHHHHcchHHHHhH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            333333333333445567777776       8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH
Q 018453          138 ALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMY  217 (355)
Q Consensus       138 ~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~  217 (355)
                      .++++++++++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.+++|++++.+.+.. |||+.|
T Consensus        88 ~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f  166 (390)
T PRK03545         88 HVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-GWRTTF  166 (390)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-cHHHHH
Confidence            9999999999999999999999999888999999999999999999999999999999999999999988876 999999


Q ss_pred             HhHHHHHHHHHHHH-hhcccc
Q 018453          218 GASTPLAVIMGMGM-WWLPAS  237 (355)
Q Consensus       218 ~~~~~~~~~~~~~~-~~~~es  237 (355)
                      ++.++++++..+.. .++||.
T Consensus       167 ~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        167 LAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCCCC
Confidence            99888877654443 335553

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.90  E-value=5.7e-22  Score=186.47  Aligned_cols=178  Identities=19%  Similarity=0.281  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 018453           54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL  133 (355)
Q Consensus        54 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l  133 (355)
                      .+.+.++.+..+++.....+..|.+.++       +|+++.+.+++.+++.+++.+++++.|+++||+|||+.++++.++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~   92 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYLIKAD-------LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            3556677777888888888888888775       899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 018453          134 YLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGW  213 (355)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w  213 (355)
                      .+++.++.+++++++.++++|++.|++.|...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+.. +|
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~-~w  171 (426)
T PRK12307         93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY-GW  171 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC-CH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888776 99


Q ss_pred             hHHHHhHHHHHHHHHHHHhhcccchh
Q 018453          214 RYMYGASTPLAVIMGMGMWWLPASPR  239 (355)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~esp~  239 (355)
                      |+.|++.++..++.+......||+++
T Consensus       172 ~~~f~i~~~~~~~~~~~~~~~p~~~~  197 (426)
T PRK12307        172 RAAFFVGLLPVLLVIYIRARAPESKE  197 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCChH
Confidence            99998865443333322223455543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.90  E-value=8.5e-22  Score=184.10  Aligned_cols=184  Identities=28%  Similarity=0.381  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 018453           49 AAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI  128 (355)
Q Consensus        49 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~  128 (355)
                      ..|...+++.+..+..+++....+...|.+.++       +|.++.+.+++.+.+.++..+++++.|+++||+|||+.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~   84 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQE-------FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILI   84 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence            445555677777888899998899999988876       8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018453          129 LAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (355)
Q Consensus       129 ~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  208 (355)
                      .+.++..++.++..+.++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  164 (406)
T PRK11551         85 VSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG  164 (406)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             cccchhHHHHhHHHHHHHHHH-HHhhcccchhH
Q 018453          209 LVAGWRYMYGASTPLAVIMGM-GMWWLPASPRW  240 (355)
Q Consensus       209 ~~~~w~~~~~~~~~~~~~~~~-~~~~~~esp~~  240 (355)
                      .. +|++.|++.+++.++..+ ..+++||+|++
T Consensus       165 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  196 (406)
T PRK11551        165 DA-AWRHIFYVGGVGPLLLVPLLMRWLPESRAF  196 (406)
T ss_pred             cc-CHHHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence            66 899999988776555443 44557887753

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.90  E-value=5.4e-22  Score=189.99  Aligned_cols=181  Identities=17%  Similarity=0.162  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 018453           50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL  129 (355)
Q Consensus        50 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~  129 (355)
                      .|...+.++++.++..++.+.++..+|.+.++       +|.+..+.+|+.+.+.+++.++.++.|+++||+|||+.+++
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~-------l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~   76 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMT-------LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLML   76 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            34556777888999999999999999999887       89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018453          130 AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETA-PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (355)
Q Consensus       130 ~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  208 (355)
                      +.++..+++++++++++++.++++|+++|++.+...+.....+.+.+ |+++|+++++++.....+|..+||.+++.+.+
T Consensus        77 ~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~  156 (495)
T PRK14995         77 GGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE  156 (495)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999998888887777765 67899999999999999999999999999998


Q ss_pred             cccchhHHHHhHHHHHHHHHHH-Hhhcccch
Q 018453          209 LVAGWRYMYGASTPLAVIMGMG-MWWLPASP  238 (355)
Q Consensus       209 ~~~~w~~~~~~~~~~~~~~~~~-~~~~~esp  238 (355)
                      +. +||+.|++...++++.+++ .+++|+++
T Consensus       157 ~~-gwr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        157 HF-YWGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             cC-ChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            87 9999999988776665443 44567654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.90  E-value=6e-22  Score=188.46  Aligned_cols=256  Identities=14%  Similarity=0.099  Sum_probs=186.3

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccccccCCCCCC---------------CccccCChhHHHHHHHHHHHHHHHHHHHHH
Q 018453           51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSG---------------ISWYDLSSVEIGLITSGSLYGALIGSILAF  115 (355)
Q Consensus        51 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g  115 (355)
                      +.+.+++.++......+....+...+.+.++....               ..+++++..+.|++.+.+.+++.+++++.|
T Consensus        18 ~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g   97 (465)
T TIGR00894        18 LFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIPVG   97 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcchH
Confidence            44445556666667778888888887776521110               014799999999999999999999999999


Q ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHH
Q 018453          116 NIADILGRRRELILAALLYLVGALVTALA--PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIV  193 (355)
Q Consensus       116 ~l~dr~Grr~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~  193 (355)
                      +++||+|||+.+..+.++..++.++..++  .+++.+++.|++.|++.+...+....++.|++|+++|++++++...+..
T Consensus        98 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  177 (465)
T TIGR00894        98 YLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQ  177 (465)
T ss_pred             HHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888877544  4578899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh-cccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCC
Q 018453          194 LGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIG  272 (355)
Q Consensus       194 ~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (355)
                      +|.++++++++.+.+...+||+.|++.+++.++..+++++ .+|+|+...      +.    ..+|.+. +++..     
T Consensus       178 ~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~------~~----~~~~~~~-i~~~~-----  241 (465)
T TIGR00894       178 LGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP------CI----SKFEKKY-INSSL-----  241 (465)
T ss_pred             HHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC------CC----CHHHHHH-HHhhc-----
Confidence            9999999999998876238999999998887776555544 566664110      00    0011111 11000     


Q ss_pred             CCchhHHHHHHHhhccccccccchhhhhhcccchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHh
Q 018453          273 DSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDF  338 (355)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (355)
                                  +.++..++.+..++++++++..+...+    ..+....+.+.+..|+|.++++.
T Consensus       242 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lp~~l~~~  291 (465)
T TIGR00894       242 ------------QGQKGSTRQSLPIKAIPKSLPVWAIWF----AIFGHFWLYTILPTYLPTFISWV  291 (465)
T ss_pred             ------------ccccCCCCCCCCHHHHhcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence                        000001112345777887755444443    33344445678889999999775

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.90  E-value=7.5e-22  Score=184.66  Aligned_cols=222  Identities=25%  Similarity=0.297  Sum_probs=178.6

Q ss_pred             cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhhHH
Q 018453           88 WYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD--FIIMVVGRFVFGIGIGLAM  165 (355)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~r~l~G~~~g~~~  165 (355)
                      +++++..+.+++.+.+++|++++++++|++.||+|.|+++..+.++.++++++...+.+  ++.+++.|+++|++.|..+
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~  146 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF  146 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence            47999999999999999999999999999999999999999999999999999988754  5678999999999999999


Q ss_pred             hHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh-cccchhHHHHh
Q 018453          166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPASPRWLLLC  244 (355)
Q Consensus       166 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~esp~~l~~~  244 (355)
                      ++...+..+|+|+++|++..++...+..+|.+++.++++.+.+...||+++|++.++++++..+++++ ..|+|+....-
T Consensus       147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~i  226 (466)
T KOG2532|consen  147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNI  226 (466)
T ss_pred             hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence            99999999999999999999999999999999999999999998449999999999999988777655 56777531110


Q ss_pred             hccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcccchhHHHHHHHHHHHHhhhhh
Q 018453          245 AMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQ  324 (355)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (355)
                                ..+|.+.+.+...                 + +..++..+..++++++++..+..++    ..+....+.
T Consensus       227 ----------s~~El~~I~~~k~-----------------~-~~~~~~~~vP~~~i~ts~~vwai~~----~~f~~~~~~  274 (466)
T KOG2532|consen  227 ----------SEKELKYIEKGKS-----------------E-AHVKKKPPVPYKAILTSPPVWAIWI----SAFGGNWGF  274 (466)
T ss_pred             ----------CHHHHHHHHhccc-----------------c-cccCCCCCCCHHHHHcCHHHHHHHH----HHHHHHHHH
Confidence                      1122222111110                 0 0011125778999999865555544    444445568


Q ss_pred             hHHHHhHHHHHHHhccc
Q 018453          325 PSVLYYAASILQDFLQP  341 (355)
Q Consensus       325 ~~~~~~~~~~~~~~~~~  341 (355)
                      +.+..|+|.|++++..-
T Consensus       275 ~~l~~y~PtY~~~VL~f  291 (466)
T KOG2532|consen  275 YLLLTYLPTYLKEVLGF  291 (466)
T ss_pred             HHHHHHhhHHHHHHhCC
Confidence            89999999999987743

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.90  E-value=7.7e-22  Score=190.29  Aligned_cols=218  Identities=22%  Similarity=0.292  Sum_probs=173.9

Q ss_pred             cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhH
Q 018453           88 WYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      +++.+.....+..+++++|.++|++++|.++||+|||++++++.++..++.++.++++|++.+++.|++.|++.++....
T Consensus       112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~  191 (521)
T KOG0255|consen  112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV  191 (521)
T ss_pred             eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence            36778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcccchhHHHHhhcc
Q 018453          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMK  247 (355)
Q Consensus       168 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~  247 (355)
                      ...++.|++++++|+.++.+ ....-.++.++++.++++..   +||+.+++..++.++.++.+++.||+|+|+..++  
T Consensus       192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g--  265 (521)
T KOG0255|consen  192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG--  265 (521)
T ss_pred             hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC--
Confidence            99999999999999999999 77777778888888777765   8999999999998888777777789999999887  


Q ss_pred             ccCchhhhHHHHHHHHHHHhCCCCCC-CchhHHHHH--HHhhccccccccchhhhhhcccchhHHHHHHHHHHH
Q 018453          248 RKGDMQDLRESAISCLCRLRGQSIGD-SAPTEVDEI--LTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLF  318 (355)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (355)
                             +.+++.+++++....+..+ ...+..++.  .++......+++..+.++++.+..++..+...+.++
T Consensus       266 -------~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~  332 (521)
T KOG0255|consen  266 -------RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWF  332 (521)
T ss_pred             -------chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHH
Confidence                   5577888887775433111 112222221  111111223344668899998855544444444443

>TIGR00895 2A0115 benzoate transport

Probab=99.90  E-value=1.5e-21  Score=181.20  Aligned_cols=181  Identities=28%  Similarity=0.461  Sum_probs=157.4

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~  134 (355)
                      +.+.+..+..++.........|.+.++       +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        20 ILSFLIMLMDGYDLAAMGFAAPAISAE-------WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHhhc-------cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            444455566666666777778887775       7999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 018453          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR  214 (355)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  214 (355)
                      +++.++..+.++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+.. +|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~  171 (398)
T TIGR00895        93 SVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GWR  171 (398)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-cce
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998877 899


Q ss_pred             HHHHhHHHHHHH-HHHHHhhcccchhHHHH
Q 018453          215 YMYGASTPLAVI-MGMGMWWLPASPRWLLL  243 (355)
Q Consensus       215 ~~~~~~~~~~~~-~~~~~~~~~esp~~l~~  243 (355)
                      +.|++.++++++ ..+..+++||++++...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (398)
T TIGR00895       172 SLFYVGGIAPLLLLLLLMRFLPESIDFLVS  201 (398)
T ss_pred             eehhhhhhHHHHHHHHHHHhCCCCChHHHh
Confidence            999988655554 44455668888776543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.89  E-value=5.4e-21  Score=177.86  Aligned_cols=158  Identities=20%  Similarity=0.309  Sum_probs=141.0

Q ss_pred             ccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 018453           72 SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMV  151 (355)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~  151 (355)
                      .+.+|.+.++       +|+++.+.++..+++.++..+++++.|.+.||+|||+.++.+.++.+++.+++.+.++++.++
T Consensus        40 ~~~l~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~  112 (394)
T PRK10213         40 VSLLTPMAQD-------LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLL  112 (394)
T ss_pred             HhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHH
Confidence            3446666665       899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHH
Q 018453          152 VGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM  231 (355)
Q Consensus       152 ~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  231 (355)
                      +.|++.|++.|...+....++.|++|+++|++++++...+.++|.+++|++++.+.+.. +||+.|++.++++++..+..
T Consensus       113 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~l~~~~~l~~  191 (394)
T PRK10213        113 IGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-GWRNVFNAAAVMGVLCIFWI  191 (394)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999887 99999998877666544333


Q ss_pred             h-hcccc
Q 018453          232 W-WLPAS  237 (355)
Q Consensus       232 ~-~~~es  237 (355)
                      + ..||+
T Consensus       192 ~~~~p~~  198 (394)
T PRK10213        192 IKSLPSL  198 (394)
T ss_pred             HHHCCCC
Confidence            2 34553

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.89  E-value=1.9e-21  Score=181.94  Aligned_cols=176  Identities=16%  Similarity=0.228  Sum_probs=154.5

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~  134 (355)
                      ....+..+...+......+.+|.+.++       ++.+..+.++..+++.+++.+++++.|.++||+|||++++.+.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~   91 (413)
T PRK15403         19 MALILYDFAAYLTTDLIQPGIINVVRD-------FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIF   91 (413)
T ss_pred             HHHHHHHHHHHHHHHhhccCHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHH
Confidence            334555566666777788888887775       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 018453          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR  214 (355)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  214 (355)
                      +++.+++.++++++.++++|+++|++.+...+....++.|++|+++|++++++......+|..+||.+++.+.+.. +||
T Consensus        92 ~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~-gw~  170 (413)
T PRK15403         92 TLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-HWK  170 (413)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHH
Confidence            9999999999999999999999999988777777888999999999999999999999999999999999988776 999


Q ss_pred             HHHHhHHHHHHHHHHH-Hhhcccch
Q 018453          215 YMYGASTPLAVIMGMG-MWWLPASP  238 (355)
Q Consensus       215 ~~~~~~~~~~~~~~~~-~~~~~esp  238 (355)
                      +.|++.+++.++..+. ++++||++
T Consensus       171 ~~f~~~~~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        171 VLFAIIAVMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999988887776554 44577764

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.89  E-value=4.1e-22  Score=189.61  Aligned_cols=183  Identities=19%  Similarity=0.150  Sum_probs=155.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 018453           50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL  129 (355)
Q Consensus        50 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~  129 (355)
                      .+.....+.++++....+....+...|.+.++       +|++..+.|++.+++.+++.+++++.|+++||+|||+++.+
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~   99 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMIST-------YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPF   99 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHH
Confidence            34455666777777888899999999988886       89999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018453          130 AALLYLVGALVTAL-----APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGS  204 (355)
Q Consensus       130 ~~~l~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  204 (355)
                      +.++.++..++.++     +++++.+++.|++.|++.+...+....++.|++|+++||++++++..+..+|.++++++..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~  179 (467)
T PRK09556        100 LLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL  179 (467)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence            88888777766654     5789999999999999999999999999999999999999999999999999999999987


Q ss_pred             Hhhccc--cchhHHHHhHHHHHHHHHHH-Hhhcccchh
Q 018453          205 LLVDLV--AGWRYMYGASTPLAVIMGMG-MWWLPASPR  239 (355)
Q Consensus       205 ~l~~~~--~~w~~~~~~~~~~~~~~~~~-~~~~~esp~  239 (355)
                      .+....  .+|+..|.+.+++.++..++ +++.+++|+
T Consensus       180 ~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~  217 (467)
T PRK09556        180 WGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE  217 (467)
T ss_pred             HHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence            766532  26999998888777665444 444577664

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.2e-21  Score=181.99  Aligned_cols=255  Identities=17%  Similarity=0.206  Sum_probs=190.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 018453           47 VSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRE  126 (355)
Q Consensus        47 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~  126 (355)
                      ++..+.+..++++.++....+...++-....-..      +|.++...+.+.+.++++++++++.++++.+.||++..+.
T Consensus        40 ~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~------edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~  113 (495)
T KOG2533|consen   40 RKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLK------EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKG  113 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCc------cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHH
Confidence            3333444445555555555555444333222222      2378899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018453          127 LILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL  206 (355)
Q Consensus       127 ~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  206 (355)
                      +....+++++..++....+|++.+++.|++.|+..++.+|....+++.|+.+++||..++++.+..++|+++|++++..+
T Consensus       114 l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~  193 (495)
T KOG2533|consen  114 LSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGV  193 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHh
Confidence            99999999888888888999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             hc-----cccchhHHHHhHHHHHHHHHH-HHhhcccchh--HHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCchhH
Q 018453          207 VD-----LVAGWRYMYGASTPLAVIMGM-GMWWLPASPR--WLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTE  278 (355)
Q Consensus       207 ~~-----~~~~w~~~~~~~~~~~~~~~~-~~~~~~esp~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (355)
                      ..     ...||||.|++.++++++..+ +.+++|+.|.  +...            ++|.+-..+++++....      
T Consensus       194 ~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~------------~~ek~~~~~~~~~~~~~------  255 (495)
T KOG2533|consen  194 FKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLT------------DEEKELVVERLRESPSG------  255 (495)
T ss_pred             hhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccc------------hHHHHHHHHHHHhccCC------
Confidence            42     223999999999999887654 5566899987  2211            12211112222111111      


Q ss_pred             HHHHHHhhccccccccchhhhhhcccchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHH
Q 018453          279 VDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQD  337 (355)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (355)
                              ...++.+..++++.++++..+...++.++....    .+++.+|+|.++++
T Consensus       256 --------~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv----~~~~~~~lpl~l~~  302 (495)
T KOG2533|consen  256 --------GIENKFKWKGFKEALKDPGVWPFSLCYFFLKLV----NYGFSYWLPLYLKS  302 (495)
T ss_pred             --------CcccccCHHHHHHHHhchhHHHHHHHHHHHhhc----cccHHHHHHHHHHc
Confidence                    001124567788889987777777655555443    68899999999998

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.89  E-value=1.1e-21  Score=170.97  Aligned_cols=262  Identities=18%  Similarity=0.243  Sum_probs=195.9

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~  134 (355)
                      .++..+++...+.....+.+.|.....       .|.+..+..++....+.|..+++..+|.++|++|||+.+.+..+..
T Consensus        81 ~~ag~gwmad~m~~m~~s~i~~~l~~~-------w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t  153 (528)
T KOG0253|consen   81 FVAGMGWMADAMEMMLLSLILPALDEV-------WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT  153 (528)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhh-------hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence            444555555555554555555555443       5889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 018453          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR  214 (355)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  214 (355)
                      ++...+.++.+|+..+.+.|.+.|+|.|+ .+...++-.|..|..+|+..+-+. ..+.+|.++...++...+... |||
T Consensus       154 ~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~-gwr  230 (528)
T KOG0253|consen  154 GVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF-GWR  230 (528)
T ss_pred             HHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh-hHH
Confidence            99999999999999999999999999998 888888889999999999988887 999999999999999888887 999


Q ss_pred             HHHHhHHHHHHHHHHHHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCc-----hhHHHHHHH-----
Q 018453          215 YMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSA-----PTEVDEILT-----  284 (355)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----  284 (355)
                      |.+...+.+..+.....+++||||+++..++         +++++.+.++++.+.+..+-.     .+..++.++     
T Consensus       231 ~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G---------~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~  301 (528)
T KOG0253|consen  231 YLLFTSSTPLMFAARFLVWVYESPRFYLAKG---------DDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDL  301 (528)
T ss_pred             HHHHHHHhHHHHHHHHHhhcccCcchhhhcC---------ChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhch
Confidence            9999999888888888899999999999988         668888888888655432211     111111111     


Q ss_pred             --hhccccccccchhhhhhcccchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHH
Q 018453          285 --ELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ  336 (355)
Q Consensus       285 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (355)
                        ...+..++...+..+++.. .+|+..+..+..|+.+-...|+.....+..++
T Consensus       302 ~~~~~~a~ke~rg~~~nLlsp-~lrkttlllw~iwfgnafsyyg~VLlttelfq  354 (528)
T KOG0253|consen  302 DDSKSSAAKEVRGGTTNLLSP-KLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQ  354 (528)
T ss_pred             hhhhhccccccccchHhhcCh-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence              1111223344566677774 44444444555555433334444444444443

>PRK09952 shikimate transporter; Provisional

Probab=99.88  E-value=2.1e-20  Score=176.31  Aligned_cols=183  Identities=20%  Similarity=0.252  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccccCCCCCCCccc-cCChhHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccHHH
Q 018453           53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWY-DLSSVEIGLIT-----SGSLYGALIGSILAFNIADILGRRRE  126 (355)
Q Consensus        53 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~-----~~~~~~~~~~~~~~g~l~dr~Grr~~  126 (355)
                      ......++.+..+++....+...+.+..+     +++ +.++. .+++.     ++.+++..+++++.|+++||+|||+.
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~   96 (438)
T PRK09952         23 AALGSFAGAVVDWYDFLLYGITAALVFNR-----EFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence            44566678888889988888776643221     001 44444 35443     34556678999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Q 018453          127 LILAALLYLVGALVTALAPDFI--------IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVG  198 (355)
Q Consensus       127 ~~~~~~l~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~  198 (355)
                      ++++.++++++.+++++++++.        .++++|+++|++.|..++....++.|++|+++|++..+..+.+..+|.++
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l  176 (438)
T PRK09952         97 LMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999876        58889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcc-------ccchhHHHHhHHHHHHHHHHHHhhcccchhHH
Q 018453          199 GYGIGSLLVDL-------VAGWRYMYGASTPLAVIMGMGMWWLPASPRWL  241 (355)
Q Consensus       199 ~~~i~~~l~~~-------~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l  241 (355)
                      +..+...+...       ..+||+.|++.+++.++...+....||+|+|.
T Consensus       177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~  226 (438)
T PRK09952        177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFE  226 (438)
T ss_pred             HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence            98877665421       23899999988877665544445578887653

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.88  E-value=1.9e-21  Score=180.11  Aligned_cols=166  Identities=19%  Similarity=0.257  Sum_probs=147.9

Q ss_pred             hhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Q 018453           65 GYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA  144 (355)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~  144 (355)
                      .++....+...|.+.++       +|++..+.+++.+++.++..++.++.|+++||+|||+.+.++.++.+++.++.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~   79 (399)
T TIGR00893         7 YLDRANLSFAAPMLQED-------LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA   79 (399)
T ss_pred             HHHHHhhhHhHHHHHHh-------hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH
Confidence            34555566667776665       89999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHH
Q 018453          145 PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLA  224 (355)
Q Consensus       145 ~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~  224 (355)
                      ++++.++++|++.|++.+...+....++.|++|+++|++.+++.+....+|.++++.+++.+.+.. +||+.|++.+++.
T Consensus        80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~  158 (399)
T TIGR00893        80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-SWQWAFIIEGVLG  158 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-CchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999988877 8999999988887


Q ss_pred             HHHHHHH-hhcccch
Q 018453          225 VIMGMGM-WWLPASP  238 (355)
Q Consensus       225 ~~~~~~~-~~~~esp  238 (355)
                      ++..+.. ++.||+|
T Consensus       159 ~~~~~~~~~~~~~~~  173 (399)
T TIGR00893       159 IIWGVLWLKFIPDPP  173 (399)
T ss_pred             HHHHHHhhheecCCC
Confidence            7655544 4456654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.88  E-value=2.7e-20  Score=177.27  Aligned_cols=161  Identities=16%  Similarity=0.178  Sum_probs=132.9

Q ss_pred             hhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhh
Q 018453           67 DIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD  146 (355)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~  146 (355)
                      ......+..|.+.++       +|++..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++.+++++
T Consensus        51 ~~~~~~~~~~~l~~~-------~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s  123 (476)
T PLN00028         51 STFAAAPLLPIIRDN-------LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS  123 (476)
T ss_pred             HHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC
Confidence            334456667777765       8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc----c----ccchhHHHH
Q 018453          147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD----L----VAGWRYMYG  218 (355)
Q Consensus       147 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~----~----~~~w~~~~~  218 (355)
                      ++.++++|++.|++.+.. .....++.|++|+++||+++++......+|..+++.+.+.+..    .    ..|||+.|+
T Consensus       124 ~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~  202 (476)
T PLN00028        124 ATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFF  202 (476)
T ss_pred             HHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHH
Confidence            999999999999988764 3456688999999999999999988777777777666654421    1    138999999


Q ss_pred             hHHHHHHHHHHHHhhcc
Q 018453          219 ASTPLAVIMGMGMWWLP  235 (355)
Q Consensus       219 ~~~~~~~~~~~~~~~~~  235 (355)
                      +.++++++..+..++++
T Consensus       203 i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        203 VPGLLHIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            99888877655555543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.88  E-value=8e-21  Score=181.60  Aligned_cols=175  Identities=18%  Similarity=0.350  Sum_probs=158.5

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~  134 (355)
                      +.++++.+...++....++.+|.+.++       +|.+..+.+++.+.+.++..++.++.|+++||+|||+.++++.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   77 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNVAIPTIAGD-------LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAF   77 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHH
Confidence            455667778888888889999999886       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 018453          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR  214 (355)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  214 (355)
                      .++.++++++++++.++++|++.|++.+...+....++.|++|+++|+++++++..+..+|..++|.+++.+.+.. +||
T Consensus        78 ~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w~  156 (485)
T TIGR00711        78 TLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-HWR  156 (485)
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-Cce
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998877 999


Q ss_pred             HHHHhHHHHHHHHHHHH-hhcccc
Q 018453          215 YMYGASTPLAVIMGMGM-WWLPAS  237 (355)
Q Consensus       215 ~~~~~~~~~~~~~~~~~-~~~~es  237 (355)
                      +.|++.++++++..++. ++.||+
T Consensus       157 ~~f~~~~~~~~~~~~~~~~~~~~~  180 (485)
T TIGR00711       157 WIFLINVPIGIIVVVVAFFILPRD  180 (485)
T ss_pred             ehhhhhhHHHHHHHHHHHHHcCCc
Confidence            99999887776655443 445654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.88  E-value=2.1e-20  Score=173.99  Aligned_cols=152  Identities=19%  Similarity=0.165  Sum_probs=138.8

Q ss_pred             cccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHH
Q 018453           69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI  148 (355)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~  148 (355)
                      ...++.+|.+.++       +|+|..+.+++.+.+.+++.+++++.|++.||+|||++++.+..+.+++.++++++++++
T Consensus        26 ~~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~   98 (393)
T PRK09705         26 TSVGPLLPQLRQA-------SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSA   98 (393)
T ss_pred             hccchhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchH
Confidence            5677889988886       899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHH
Q 018453          149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMG  228 (355)
Q Consensus       149 ~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~  228 (355)
                      .++++|++.|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++.+.++..+||+.+.+.++..++.+
T Consensus        99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705         99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999997 78999999999999999999999999888775589998877665544443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.87  E-value=2.4e-20  Score=175.92  Aligned_cols=163  Identities=21%  Similarity=0.316  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHH-HHHH-----HHHHHHHHHHHHHHHHHhccHHH
Q 018453           53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLI-TSGS-----LYGALIGSILAFNIADILGRRRE  126 (355)
Q Consensus        53 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~-----~~~~~~~~~~~g~l~dr~Grr~~  126 (355)
                      ....++++.++.+++...++...|.+.++       ++.++.+.+.+ .+..     .++..+++++.|+++||+|||+.
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~   88 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKT-------FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG   88 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH
Confidence            34667788999999999999999999886       78777665433 2222     22334788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Q 018453          127 LILAALLYLVGALVTALAPDFI--------IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVG  198 (355)
Q Consensus       127 ~~~~~~l~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~  198 (355)
                      ++.+.++..++.++++++++++        .++++|++.|++.|...+....++.|++|+++|++++++...+..+|..+
T Consensus        89 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~  168 (434)
T PRK15075         89 LIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF  168 (434)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999998876        46889999999999999988999999999999999999999988888888


Q ss_pred             HHHHHHHhh--------ccccchhHHHHhHHHH
Q 018453          199 GYGIGSLLV--------DLVAGWRYMYGASTPL  223 (355)
Q Consensus       199 ~~~i~~~l~--------~~~~~w~~~~~~~~~~  223 (355)
                      ++.+++.+.        +.. |||+.|++.++.
T Consensus       169 g~~~g~~l~~~~~~~~~~~~-gWr~~f~~~~~~  200 (434)
T PRK15075        169 AALLGYLLNQWLSPAQMAEW-GWRIPFLIGCLI  200 (434)
T ss_pred             HHHHHHHHHHhCCHHHHhcc-chHHHHHHHHHH
Confidence            888777653        344 899999875443

>PRK03699 putative transporter; Provisional

Probab=99.87  E-value=3.8e-20  Score=172.36  Aligned_cols=171  Identities=17%  Similarity=0.193  Sum_probs=150.1

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~  134 (355)
                      ..++++.+..+......+..+|.+.++       +|+|..+.+++.+.+.+++.+++++.|++.||+|||+.+..+.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~g~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~   82 (394)
T PRK03699         10 WISFLSYALTGALVIVTGMVMGPIAEY-------FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM   82 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344556667777777788888888876       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 018453          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR  214 (355)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  214 (355)
                      +++.++.+++++++.++++|++.|++.|...+....++.|++|+++|+.+++..+....+|+.++|.+.+.+.....+||
T Consensus        83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~  162 (394)
T PRK03699         83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWY  162 (394)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            99999999999999999999999999998888889999999999999999999999999999999999888775434999


Q ss_pred             HHHHhHHHHHHHHHHHHh
Q 018453          215 YMYGASTPLAVIMGMGMW  232 (355)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~  232 (355)
                      +.|++.+++.++..+..+
T Consensus       163 ~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        163 WVYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999988877666544433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.87  E-value=1.9e-20  Score=173.52  Aligned_cols=167  Identities=17%  Similarity=0.224  Sum_probs=148.2

Q ss_pred             hhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Q 018453           64 YGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL  143 (355)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~  143 (355)
                      ..+......+..|.+.++       +|.++.+.+++.+++.++..+++++.|++.||+|||+.+..+.++.+++.++..+
T Consensus        17 ~~~~~~~~~~~~p~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~   89 (385)
T TIGR00710        17 GPLGIDMYLPAFPEIAAD-------LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL   89 (385)
T ss_pred             HHHHHHHhcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            344555666778887775       8999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHH
Q 018453          144 APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPL  223 (355)
Q Consensus       144 ~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~  223 (355)
                      .++++.+++.|++.|++.+...+....++.|++|+++|++.+++.+....+|..+++.+++.+.+.. +||+.|++.+++
T Consensus        90 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~~~~~~~~  168 (385)
T TIGR00710        90 SNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-SWHAIFAFLSLA  168 (385)
T ss_pred             HccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999988876 999999988877


Q ss_pred             HHHHHHHH-hhcccch
Q 018453          224 AVIMGMGM-WWLPASP  238 (355)
Q Consensus       224 ~~~~~~~~-~~~~esp  238 (355)
                      .++..+.. ++.||++
T Consensus       169 ~~~~~~~~~~~~~~~~  184 (385)
T TIGR00710       169 GILLSALIFFILPETL  184 (385)
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            76655443 4456543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.87  E-value=4.4e-20  Score=171.17  Aligned_cols=174  Identities=15%  Similarity=0.247  Sum_probs=153.3

Q ss_pred             HHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 018453           56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL  135 (355)
Q Consensus        56 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~  135 (355)
                      ...+..+..+.......+.+|.+.++       +|++..+.+++.+.+.+++.+++++.|+++||+|||+.+.++.++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   79 (382)
T PRK10091          7 SLALGTFGLGMAEFGIMGVLTELAHD-------VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCV   79 (382)
T ss_pred             HHHHHHHHHHhhHHHHHhChHHHHHH-------cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHH
Confidence            33445566666666777788888776       89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhH
Q 018453          136 VGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY  215 (355)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  215 (355)
                      ++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++++++.+.+.. +||+
T Consensus        80 ~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gwr~  158 (382)
T PRK10091         80 IGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF-SWRY  158 (382)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc-cHHH
Confidence            999999999999999999999999999888888899999999999999999999999999999999999988876 8999


Q ss_pred             HHHhHHHHHHHHHHH-Hhhcccc
Q 018453          216 MYGASTPLAVIMGMG-MWWLPAS  237 (355)
Q Consensus       216 ~~~~~~~~~~~~~~~-~~~~~es  237 (355)
                      .|++.+++.++..+. .+++||.
T Consensus       159 ~f~~~~~~~~~~~~~~~~~lp~~  181 (382)
T PRK10091        159 TFLLIAVFNIAVLASIYFWVPDI  181 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCC
Confidence            999988876665443 3446664

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.87  E-value=1.3e-21  Score=180.47  Aligned_cols=171  Identities=16%  Similarity=0.126  Sum_probs=148.6

Q ss_pred             HHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 018453           61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV  140 (355)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~  140 (355)
                      ++.+.++....+...|.+.++       +|++..+.+++.++..++..++.++.|+++||+|||+.++++.++..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   76 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVEE-------IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF   76 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHHH-------hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence            345556666777778877765       8999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH-HHHHHhhccccchhHHHHh
Q 018453          141 TALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGY-GIGSLLVDLVAGWRYMYGA  219 (355)
Q Consensus       141 ~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~-~i~~~l~~~~~~w~~~~~~  219 (355)
                      .+++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++ .++..+.+.. +||+.|++
T Consensus        77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  155 (379)
T TIGR00881        77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY-SWHWVFIV  155 (379)
T ss_pred             HHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC-CchhHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999 4666565555 99999998


Q ss_pred             HHHHHHHHH-HHHhhcccchh
Q 018453          220 STPLAVIMG-MGMWWLPASPR  239 (355)
Q Consensus       220 ~~~~~~~~~-~~~~~~~esp~  239 (355)
                      .+++.++.. +..++.+|+|+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~  176 (379)
T TIGR00881       156 PGIIAIIVSLICFLLLRDSPQ  176 (379)
T ss_pred             HHHHHHHHHHHHheeeCCCcc
Confidence            887766644 44455677654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.86  E-value=5.5e-20  Score=174.29  Aligned_cols=177  Identities=15%  Similarity=0.061  Sum_probs=141.2

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~  134 (355)
                      ....+.....+.+....+..+|.+.+        .|++..+.+++.+.+.+++++++++.|+++||+|||++++++.++.
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~p~l~~--------~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~  103 (452)
T PRK11273         32 LGIFFGYAAYYLVRKNFALAMPYLVE--------QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  103 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence            33344455555555555666776654        2889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh----hHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Q 018453          135 LVGALVTALAP----DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV-GGYGIGSLLVDL  209 (355)
Q Consensus       135 ~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~-~~~~i~~~l~~~  209 (355)
                      +++.++.++.+    +++.+++.|++.|++.|...+.....+.|++|+++|++++++++.+..+|.. .+++++..+...
T Consensus       104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  183 (452)
T PRK11273        104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF  183 (452)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            99998887753    6788899999999999988888888899999999999999999999999875 455544333333


Q ss_pred             ccchhHHHHhHHHHHHHH-HHHHhhcccchhH
Q 018453          210 VAGWRYMYGASTPLAVIM-GMGMWWLPASPRW  240 (355)
Q Consensus       210 ~~~w~~~~~~~~~~~~~~-~~~~~~~~esp~~  240 (355)
                      . +||+.|++.++++++. ++..+++||+|+.
T Consensus       184 ~-gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~  214 (452)
T PRK11273        184 N-DWHAALYMPAFAAILVALFAFAMMRDTPQS  214 (452)
T ss_pred             c-cHHHHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence            3 8999999988776664 4455667887753

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.86  E-value=2.8e-20  Score=169.91  Aligned_cols=172  Identities=31%  Similarity=0.520  Sum_probs=146.8

Q ss_pred             HHHHHhhhhhcccccccc-cccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 018453           59 LGGLLYGYDIGSTSCATI-SIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVG  137 (355)
Q Consensus        59 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~  137 (355)
                      ++.+..++......+.+| .+.++       +|.+..+.+++.+++.++..+++++.|+++||+|||+.++++.++.+++
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~   75 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEE-------LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG   75 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCC-------STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH
Confidence            344555555556677777 56565       8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH
Q 018453          138 ALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMY  217 (355)
Q Consensus       138 ~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~  217 (355)
                      .++..++++.+.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.++++.+++.+.+.. +||+.|
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-~~~~~~  154 (352)
T PF07690_consen   76 SLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-GWRWAF  154 (352)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-HHCCHH
T ss_pred             HHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-cccccc
Confidence            6666666888899999999999999999999999999999999999999999999999999999999998776 899999


Q ss_pred             HhHHHHHHHHHHH-Hhhcccch
Q 018453          218 GASTPLAVIMGMG-MWWLPASP  238 (355)
Q Consensus       218 ~~~~~~~~~~~~~-~~~~~esp  238 (355)
                      ++.+++.++..++ .+++++++
T Consensus       155 ~~~~~~~~~~~il~~~~~~~~~  176 (352)
T PF07690_consen  155 LISAILSLIAAILFILFLPEPP  176 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCC---S
T ss_pred             ccccchhhhhhhhHhhhhhhcc
Confidence            9999998887654 34455443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.86  E-value=1.9e-19  Score=172.66  Aligned_cols=180  Identities=23%  Similarity=0.397  Sum_probs=158.0

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 018453           53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL  132 (355)
Q Consensus        53 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  132 (355)
                      ....+.++.+..+++.....+..|.+.++       +|++..+.+++.+.+.++++++.++.|+++||+|||+.++.+.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   93 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQGE-------FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            44555667777788888888888888775       89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018453          133 LYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG  212 (355)
Q Consensus       133 l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~  212 (355)
                      +.+++.++.++.++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+.. +
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~  172 (496)
T PRK03893         94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW-G  172 (496)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998876 9


Q ss_pred             hhHHHHhHHHHHHHHHHHHhhcccchhH
Q 018453          213 WRYMYGASTPLAVIMGMGMWWLPASPRW  240 (355)
Q Consensus       213 w~~~~~~~~~~~~~~~~~~~~~~esp~~  240 (355)
                      ||+.|++.++..++.++.....||++++
T Consensus       173 w~~~f~~~~~~~~~~~~~~~~~p~~~~~  200 (496)
T PRK03893        173 WRALFFIGILPIIFALWLRKNLPEAEDW  200 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence            9999987655544444444456776654

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.86  E-value=2.7e-22  Score=180.34  Aligned_cols=187  Identities=22%  Similarity=0.360  Sum_probs=168.0

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Q 018453           45 YSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR  124 (355)
Q Consensus        45 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr  124 (355)
                      .+++..+...++.++.+.+...+...+..+.+.+...       +|++++..|++.+.+.++.++++++.|+++||+.||
T Consensus        26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~-------fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~   98 (493)
T KOG1330|consen   26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTY-------FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK   98 (493)
T ss_pred             cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHh-------cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            3444445555777888889999999888888877765       899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018453          125 RELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGS  204 (355)
Q Consensus       125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  204 (355)
                      +++.+|..++.++.+.++++.++|.++++|.+.|+|.+...++.+.+++|.+|..+|++.+++++.+..+|..+|.+++.
T Consensus        99 ~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs  178 (493)
T KOG1330|consen   99 RVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS  178 (493)
T ss_pred             eEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccccchhHHHHhHHHHHHHHHHHHhh-cccch
Q 018453          205 LLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPASP  238 (355)
Q Consensus       205 ~l~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~esp  238 (355)
                      .+......|||.|+..+++.+++.++.++ .+|.+
T Consensus       179 ~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  179 VVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             eeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence            88887756999999999998887665554 55543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.86  E-value=1e-19  Score=170.16  Aligned_cols=183  Identities=18%  Similarity=0.212  Sum_probs=157.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 018453           48 SAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREL  127 (355)
Q Consensus        48 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~  127 (355)
                      +..++..+.+.++.+...+......+.++.+.++       +|.+..+.++..+.+.+++.++.++.|.++||+|||+.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l   81 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVED-------FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM   81 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence            4445555666677777677777777788877775       899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018453          128 ILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV  207 (355)
Q Consensus       128 ~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  207 (355)
                      +++.++..++.++..+.++++.+++.|++.|++.+...+....++.|.+|+++|++.+++......+|..++|.+++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  161 (406)
T PRK15402         82 LAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI  161 (406)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888888999999999999999999998888999999999999988


Q ss_pred             ccccchhHHHHhHHHHHHHHHHHH-hhcccch
Q 018453          208 DLVAGWRYMYGASTPLAVIMGMGM-WWLPASP  238 (355)
Q Consensus       208 ~~~~~w~~~~~~~~~~~~~~~~~~-~~~~esp  238 (355)
                      +.. +||+.|++.++++++..+.. +..||++
T Consensus       162 ~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        162 HVL-PWRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             Hcc-CccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            876 99999998888877655543 3456653

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.7e-21  Score=174.58  Aligned_cols=283  Identities=16%  Similarity=0.174  Sum_probs=199.4

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018453           40 PSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGIS-WYDLSSVEIGLITSGSLYGALIGSILAFNIA  118 (355)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~  118 (355)
                      +......|+....+ +++.++.+.++|+...++.+.+.+....+.+.+ .-++++...+.+..+..+|.++|++++|++.
T Consensus        30 ~~~~g~qw~~fk~i-~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lg  108 (538)
T KOG0252|consen   30 RTSEGLQWKHFKAI-IIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLG  108 (538)
T ss_pred             ccccchhHHHHHHH-HHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444566666555 788899999999999999888877653322210 1246778889999999999999999999999


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHH
Q 018453          119 DILGRRRELILAALLYLVGALVTALAPD-------FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFF  191 (355)
Q Consensus       119 dr~Grr~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~  191 (355)
                      ||+|||+++...+++++++++++++...       .+++...|+++|+|.|+-+|+..+..+|....+.||...+.+...
T Consensus       109 D~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~  188 (538)
T KOG0252|consen  109 DKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAM  188 (538)
T ss_pred             hhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEe
Confidence            9999999999999999999997776421       467889999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHhhc----cc----------cchhHHHHhHHHHHHHHHHHHhhcccchhHHHHhhccccCchhhhHH
Q 018453          192 IVLGMVGGYGIGSLLVD----LV----------AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRE  257 (355)
Q Consensus       192 ~~~g~~~~~~i~~~l~~----~~----------~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~  257 (355)
                      .++|...|.+++..+..    ..          .-||..+.+.++++++.+...+.+|||++|.....++.        +
T Consensus       189 Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~--------~  260 (538)
T KOG0252|consen  189 QGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKL--------K  260 (538)
T ss_pred             cchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCH--------h
Confidence            88887777776655441    11          14999999999998888888888999999874433111        1


Q ss_pred             HHHHHHHHHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcccchh--HHHHHHHHHHHHhhhhhhHHHHhHHHHH
Q 018453          258 SAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLK--ALIIGAGLVLFQQITGQPSVLYYAASIL  335 (355)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (355)
                      .+.+..+|   ....     .+.+..+. +......+.+...+.+....|  +.+++....||..-..+|..+.+...++
T Consensus       261 ~a~~d~~k---~~~~-----~~~~~~~~-~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~  331 (538)
T KOG0252|consen  261 QAAGDMKK---VLSV-----DIEAESTA-ESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIF  331 (538)
T ss_pred             hhhhcccc---cccc-----ccchhhcc-ccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHH
Confidence            11111110   0000     00000000 011111122222222222223  6777788888888888999999999999


Q ss_pred             HHhcc
Q 018453          336 QDFLQ  340 (355)
Q Consensus       336 ~~~~~  340 (355)
                      ++++-
T Consensus       332 ~~ig~  336 (538)
T KOG0252|consen  332 SAIGV  336 (538)
T ss_pred             Hhhcc
Confidence            86653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.86  E-value=3.8e-19  Score=165.62  Aligned_cols=213  Identities=14%  Similarity=0.094  Sum_probs=160.7

Q ss_pred             hcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh---
Q 018453           68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA---  144 (355)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~---  144 (355)
                      -...++..+.+.+.      ++|+|.++.+++.+++.+++.+++++.|++.||+|.|+++.++.++..+.+++.+++   
T Consensus        50 w~~~~~l~~~~~~~------~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~  123 (462)
T PRK15034         50 WMLFSAVTVNLNKI------GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQN  123 (462)
T ss_pred             HHHHHHHHHHhhhh------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcc
Confidence            33445555555441      289999999999999999999999999999999999999999999999999999886   


Q ss_pred             --hhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-----cc--------
Q 018453          145 --PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV-----DL--------  209 (355)
Q Consensus       145 --~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~-----~~--------  209 (355)
                        ++++.+++.|++.|++ |..++.....+++++|+++||+++|+.....++|..+++++...+.     ..        
T Consensus       124 ~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~  202 (462)
T PRK15034        124 PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQ  202 (462)
T ss_pred             cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence              7999999999999998 6688889999999999999999999997777777776666554433     11        


Q ss_pred             ----ccchhHHHHhHHHHHHHHHHHHhhc-ccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHH
Q 018453          210 ----VAGWRYMYGASTPLAVIMGMGMWWL-PASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILT  284 (355)
Q Consensus       210 ----~~~w~~~~~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (355)
                          ..+||.+.++.+++.++..++.++. ++.|+                                             
T Consensus       203 ~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---------------------------------------------  237 (462)
T PRK15034        203 ADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---------------------------------------------  237 (462)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---------------------------------------------
Confidence                1258888888777776665554443 33221                                             


Q ss_pred             hhccccccccchhhhhhcccchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhccc
Q 018453          285 ELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQP  341 (355)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (355)
                           ++....+..+.+|+|..|.+.+..++.+    .++.++.+|.|+++++..+.
T Consensus       238 -----~~~~~~~~~~vlk~~~~Wllslly~~tF----G~fvg~s~~lp~~~~~~~~~  285 (462)
T PRK15034        238 -----SRASIADQLPVLQRLHLWLLSLLYLATF----GSFIGFSAGFAMLAKTQFPD  285 (462)
T ss_pred             -----cccCHHHHHHHhCCCchhHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCh
Confidence                 0112234566788877666666554433    35677888999998886643

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.86  E-value=4.9e-20  Score=169.76  Aligned_cols=159  Identities=14%  Similarity=0.084  Sum_probs=139.9

Q ss_pred             ccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 018453           70 STSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFII  149 (355)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~  149 (355)
                      ..++..|.+.++       +|++..+.+++.+++.+++.+++++.|+++||+|||+.+.++.++.+++.++++++++++.
T Consensus        21 ~~~~~~~~~~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~   93 (377)
T TIGR00890        21 TWTLLAPPLGRY-------FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAA   93 (377)
T ss_pred             hhhhHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHH
Confidence            456677877776       8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHH
Q 018453          150 MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM  229 (355)
Q Consensus       150 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~  229 (355)
                      ++++|++.|++.+..++.....+.+++| ++|+++.++...+..+|.++++++.+.+.+.. +||+.|++.++++++..+
T Consensus        94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~  171 (377)
T TIGR00890        94 LYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLE-GVPAAFIYMGIIFLLVIV  171 (377)
T ss_pred             HHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence            9999999999999888888888999987 57999999999999999988777777777665 899999998888777655


Q ss_pred             HH-hhcccc
Q 018453          230 GM-WWLPAS  237 (355)
Q Consensus       230 ~~-~~~~es  237 (355)
                      .. +++++.
T Consensus       172 ~~~~~~~~~  180 (377)
T TIGR00890       172 LGAFLIGYP  180 (377)
T ss_pred             HHHHheecC
Confidence            44 345443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.85  E-value=7.3e-20  Score=172.79  Aligned_cols=177  Identities=16%  Similarity=0.071  Sum_probs=145.6

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~  134 (355)
                      ....+................|.+.+        .|++..+.+++.+++.++..++.++.|+++||+|||+.+..+.++.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~p~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~  101 (438)
T TIGR00712        30 LGIFFGYAAYYLVRKNFALAMPYLVE--------QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS  101 (438)
T ss_pred             HHHHHHHHHHHHHhccHHhhhHHHHH--------cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence            44444555555555555666676654        5899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh----hhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018453          135 LVGALVTALA----PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV  210 (355)
Q Consensus       135 ~~~~~~~~~~----~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  210 (355)
                      +++.++.++.    .+++.+.+.|++.|++.|...+.....+.|++|+++|++++++.+.+..+|+.+++.+.+......
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~  181 (438)
T TIGR00712       102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF  181 (438)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence            9888877654    457778889999999999888888899999999999999999999999999999998877655433


Q ss_pred             cchhHHHHhHHHHHHHHH-HHHhhcccchh
Q 018453          211 AGWRYMYGASTPLAVIMG-MGMWWLPASPR  239 (355)
Q Consensus       211 ~~w~~~~~~~~~~~~~~~-~~~~~~~esp~  239 (355)
                      .+||+.|++.++++++.. +.++++||+|+
T Consensus       182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~  211 (438)
T TIGR00712       182 NDWHAALYFPAICAIIVALFAFAMMRDTPQ  211 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            489999999888877654 44556788765

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.85  E-value=1.2e-19  Score=166.49  Aligned_cols=164  Identities=18%  Similarity=0.096  Sum_probs=142.2

Q ss_pred             HHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 018453           62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT  141 (355)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~  141 (355)
                      +...+........+|.+..+       ++.+..+.+++.+++.++.++++++.|+++||+|||+.++.+.++..++.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         9 LISLIGTAITQVALPLYVLA-------GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            33334444455556666654       68899999999999999999999999999999999999999999988888888


Q ss_pred             Hhhh-----hHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHH
Q 018453          142 ALAP-----DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM  216 (355)
Q Consensus       142 ~~~~-----~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~  216 (355)
                      .+..     +++.++++|++.|++.+...+....++.|++|+++|++.+++.+.+..+|.+++|.+++.+.+.. +||+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~~  160 (365)
T TIGR00900        82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-GIKWA  160 (365)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHH
Confidence            8777     89999999999999999999999999999999999999999999999999999999999998877 99999


Q ss_pred             HHhHHHHHHHHHHHHhh
Q 018453          217 YGASTPLAVIMGMGMWW  233 (355)
Q Consensus       217 ~~~~~~~~~~~~~~~~~  233 (355)
                      |++.++..++..+..++
T Consensus       161 ~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       161 IWVDAVGFAISALLIVS  177 (365)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99887776665544443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.85  E-value=2.5e-19  Score=164.94  Aligned_cols=167  Identities=16%  Similarity=0.189  Sum_probs=134.4

Q ss_pred             hhhhccccccccc-ccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Q 018453           65 GYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL  143 (355)
Q Consensus        65 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~  143 (355)
                      ........+..|. +.++       +|++..+.+++.+++.+++++++++.|+++||+|||+.++++.++..++.++.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~   86 (366)
T TIGR00886        14 FSVWFAFSPLAVQMIKDD-------LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL   86 (366)
T ss_pred             HHHHHHhHHhhhHHHHHH-------hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            3344456777775 5554       8999999999999999999999999999999999999999999999999999999


Q ss_pred             hh-hHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc---------ccch
Q 018453          144 AP-DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL---------VAGW  213 (355)
Q Consensus       144 ~~-~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~---------~~~w  213 (355)
                      .+ +++.+++.|++.|++.+. .+....++.|++|+++|++++++...+..+|..+++.+++.+...         ..+|
T Consensus        87 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w  165 (366)
T TIGR00886        87 AVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAW  165 (366)
T ss_pred             HhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            99 999999999999998654 566788999999999999999999988888888777777665531         2379


Q ss_pred             hHHHH-hHHHHHHH-HHHHHhhcccchh
Q 018453          214 RYMYG-ASTPLAVI-MGMGMWWLPASPR  239 (355)
Q Consensus       214 ~~~~~-~~~~~~~~-~~~~~~~~~esp~  239 (355)
                      |+.|+ +.+++.++ ..+..++.+|+|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (366)
T TIGR00886       166 GWAFVIVPAGILLLPALLIFFVGADTPP  193 (366)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcccCCc
Confidence            99994 43444443 3334445666653

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.85  E-value=1.6e-19  Score=165.52  Aligned_cols=247  Identities=16%  Similarity=0.180  Sum_probs=178.0

Q ss_pred             hcccccccccccCCCCCCCccccCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhh
Q 018453           68 IGSTSCATISIESPTLSGISWYDLSSVE-IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD  146 (355)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~  146 (355)
                      ....+.+.|.+.++       +|++.++ .|.+.+++..+++++.+++|+++||+|.|+++.++.+.+++..++.+++++
T Consensus        42 R~n~s~a~p~L~~e-------lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S  114 (511)
T TIGR00806        42 RPGESFITPYLLTV-------LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS  114 (511)
T ss_pred             hchHHHHHHHHHHH-------cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666766665       8999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHH---hHHHH
Q 018453          147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYG---ASTPL  223 (355)
Q Consensus       147 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~---~~~~~  223 (355)
                      +..+.+.|++.|++.|... ....++..|+|+++|+++.++...+..+|.++++++++. +... |||+.+.   +....
T Consensus       115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~-gWr~y~~Ln~Isl~s  191 (511)
T TIGR00806       115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTL-GWISYSTLNIISLVF  191 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-CchhHHHHHHHHHHH
Confidence            9999999999999999999 999999999999999999999999999999999999999 4455 8886553   44455


Q ss_pred             HHHHHHHHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccccccccchhhhhh--
Q 018453          224 AVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVF--  301 (355)
Q Consensus       224 ~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  301 (355)
                      .+++++..+++|..++-+.-++++..       ++.  .-.++.....+ +.    .+   ..+..+.......+.++  
T Consensus       192 ~~~a~~~a~~LP~~~~sl~f~~~~~~-------~~~--~~~~~~~~~~~-~~----~~---~~~~~~~~~~~~~~~l~~~  254 (511)
T TIGR00806       192 MTFSVFLALFLKRPKRSLFFNRLEDV-------RGA--LPCELDQMVPG-PG----GK---LEDYLGTCRDSFLVRMLSE  254 (511)
T ss_pred             HHHHHHHHHhCCCCchhhhhcccccc-------ccc--cccccccCCCC-Cc----cc---cchhhhhhhhHHHHHHHHH
Confidence            55566777888855543332221000       000  00000000000 00    00   00000001111112222  


Q ss_pred             -cccchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhccc
Q 018453          302 -HGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQP  341 (355)
Q Consensus       302 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (355)
                       ++-...+.++-..+++....+|.+-+..|.-.+.+.+.++
T Consensus       255 ~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~  295 (511)
T TIGR00806       255 LVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDES  295 (511)
T ss_pred             HHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCC
Confidence             2223346666677888889999999999999999887664

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10133 L-fucose transporter; Provisional

Probab=99.85  E-value=6.5e-19  Score=165.96  Aligned_cols=148  Identities=22%  Similarity=0.320  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 018453           53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL  132 (355)
Q Consensus        53 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  132 (355)
                      .++...+..+..++.....+...|.+.++       +|+++.+.+++.+.+.+++.+++++.|++.||+|||+++.++.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-------~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~   99 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            33444555677788888888889988765       89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH---HhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018453          133 LYLVGALVT---ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV  207 (355)
Q Consensus       133 l~~~~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  207 (355)
                      +..++.+++   .++++++.++++|++.|+|.|...+..+.++.|+.|+++|+..+++.+..+.+|..+++.+++.+.
T Consensus       100 ~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999875   457899999999999999999999999999999887777777899999999999999999987654

>PRK11043 putative transporter; Provisional

Probab=99.85  E-value=3.9e-19  Score=165.92  Aligned_cols=163  Identities=18%  Similarity=0.220  Sum_probs=143.2

Q ss_pred             hhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhh
Q 018453           67 DIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD  146 (355)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~  146 (355)
                      ......+.++.+.++       +|.++.+.+++.+++.+++.+++++.|+++||+|||+.+..+.++.+++.++..+.++
T Consensus        21 ~~~~~~p~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   93 (401)
T PRK11043         21 ATDMYLPAFKAIQAD-------LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES   93 (401)
T ss_pred             HHHHHHhhHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence            344455666666665       8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHH
Q 018453          147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (355)
Q Consensus       147 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~  226 (355)
                      ++.+++.|++.|++.+...+....++.|++|+++++...+.......+|..++|.+++.+.+.. +||+.|++.+++.++
T Consensus        94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~~~~~~~~~~~  172 (401)
T PRK11043         94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-GWQAIFATLFAITLL  172 (401)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHH
Confidence            9999999999999988888888889999999999999999999999999999999999998887 999999988888777


Q ss_pred             HHHHHhhcccc
Q 018453          227 MGMGMWWLPAS  237 (355)
Q Consensus       227 ~~~~~~~~~es  237 (355)
                      ..+..++++++
T Consensus       173 ~~~~~~~~~~~  183 (401)
T PRK11043        173 LILPTLRLKPS  183 (401)
T ss_pred             HHHHHHHcCCC
Confidence            66555555544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.85  E-value=2.3e-20  Score=182.43  Aligned_cols=175  Identities=19%  Similarity=0.290  Sum_probs=150.3

Q ss_pred             HHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 018453           56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL  135 (355)
Q Consensus        56 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~  135 (355)
                      ..++..+..+...+..+..++.+.++       ++++..+.|++.+.+.+++.++.++.+++.||+|||+.+.++.++++
T Consensus        37 ~~~~~~~~~~~~~g~~~~~l~~iek~-------F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~  109 (633)
T TIGR00805        37 LLTCAQLQGLLYNGLVNSSLTTIERR-------FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMG  109 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhh-------hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHH
Confidence            33445555566677888888888886       89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh---------------------------------------------------hHHHHHHHHHHHHHHHhhH
Q 018453          136 VGALVTALAP---------------------------------------------------DFIIMVVGRFVFGIGIGLA  164 (355)
Q Consensus       136 ~~~~~~~~~~---------------------------------------------------~~~~~~~~r~l~G~~~g~~  164 (355)
                      ++.++.++.+                                                   .+..++++|++.|+|.+..
T Consensus       110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~  189 (633)
T TIGR00805       110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI  189 (633)
T ss_pred             HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence            9999987753                                                   2456778999999999999


Q ss_pred             HhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc---------------------cchhHHHHhHHHH
Q 018453          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV---------------------AGWRYMYGASTPL  223 (355)
Q Consensus       165 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~---------------------~~w~~~~~~~~~~  223 (355)
                      ++....++.|++|+++|+.++++++.+..+|.++|+++++.+.+..                     ++|+..|++.+++
T Consensus       190 ~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l  269 (633)
T TIGR00805       190 FPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGV  269 (633)
T ss_pred             hhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999887532                     1377788888888


Q ss_pred             HHHHHHHHhhcccc
Q 018453          224 AVIMGMGMWWLPAS  237 (355)
Q Consensus       224 ~~~~~~~~~~~~es  237 (355)
                      .++..+.++++|++
T Consensus       270 ~~l~~v~l~~~p~~  283 (633)
T TIGR00805       270 ALLTSIPFFFFPKA  283 (633)
T ss_pred             HHHHHHHHHhCccc
Confidence            77766666666654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.84  E-value=5.4e-19  Score=164.56  Aligned_cols=164  Identities=18%  Similarity=0.254  Sum_probs=143.2

Q ss_pred             hhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhh
Q 018453           67 DIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD  146 (355)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~  146 (355)
                      ......+.+|.+.++       +|++..+.+++.+.+.+++.+++++.|.++||+|||+.+..+.++..++.++..+.++
T Consensus        23 ~~~~~~p~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~   95 (394)
T PRK11652         23 AQTIYVPAIADMARD-------LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS   95 (394)
T ss_pred             HHHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            333455667777765       8999999999999999999999999999999999999999999999999999988999


Q ss_pred             HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHH
Q 018453          147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (355)
Q Consensus       147 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~  226 (355)
                      ++.+++.|++.|++.+...+....+..|.+++++|+.+.++...+..+|..++|.+++.+.+.. +||+.|++.+++.++
T Consensus        96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~f~~~~~~~~~  174 (394)
T PRK11652         96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-GWRACYLFLLLLGAG  174 (394)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHH
Confidence            9999999999999998888888888999999999999999999999999999999999988776 899999988777665


Q ss_pred             HHH-HHhhcccch
Q 018453          227 MGM-GMWWLPASP  238 (355)
Q Consensus       227 ~~~-~~~~~~esp  238 (355)
                      ..+ ..++.||++
T Consensus       175 ~~~~~~~~~~~~~  187 (394)
T PRK11652        175 VTFSMARWMPETR  187 (394)
T ss_pred             HHHHHHHhCCccC
Confidence            443 345567654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.84  E-value=6.1e-19  Score=164.72  Aligned_cols=170  Identities=19%  Similarity=0.266  Sum_probs=148.4

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~  134 (355)
                      +.+++..+..|+.....++.+|.++++       +|++..+.|++.+.+.+++.+++++.|++.||+|||+.++++.++.
T Consensus         6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~-------~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~   78 (410)
T TIGR00885         6 ALITSLFALWGFANDITNPMVPQFQQA-------FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLY   78 (410)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            445566677788888888999998876       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh---hhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc-
Q 018453          135 LVGALVTAL---APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-  210 (355)
Q Consensus       135 ~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-  210 (355)
                      +++.++...   .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+.+.++|..+++.+++.+.... 
T Consensus        79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~  158 (410)
T TIGR00885        79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNL  158 (410)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999887644   3579999999999999999999999999999999999999999999999999999999998875321 


Q ss_pred             ------------------------cchhHHHHhHHHHHHHHHHHH
Q 018453          211 ------------------------AGWRYMYGASTPLAVIMGMGM  231 (355)
Q Consensus       211 ------------------------~~w~~~~~~~~~~~~~~~~~~  231 (355)
                                              .+||++|++.+++.++..+..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       159 PHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             ccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                    269999998888766654443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10504 putative transporter; Provisional

Probab=99.84  E-value=3.3e-18  Score=163.07  Aligned_cols=172  Identities=17%  Similarity=0.297  Sum_probs=151.3

Q ss_pred             HHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 018453           57 PALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLV  136 (355)
Q Consensus        57 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~  136 (355)
                      ++++.++..++....++.+|.+.++       +|.+..+.+++.+.+.++..++.++.|+++||+|||+.++.+.++..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~   87 (471)
T PRK10504         15 VAFGFFMQSLDTTIVNTALPSMAQS-------LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTL   87 (471)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            3445566666777777888888876       899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHH
Q 018453          137 GALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM  216 (355)
Q Consensus       137 ~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~  216 (355)
                      +.+++.++++.+.++++|++.|++.+...+....++.|++|+++|+++.++......+|..++|.+++.+.+.. +||+.
T Consensus        88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~-gw~~~  166 (471)
T PRK10504         88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHWI  166 (471)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-cHHHH
Confidence            99988888999999999999999999999999999999999999999999999999999999999999999887 99999


Q ss_pred             HHhHHHHHHHHHHHHhh-ccc
Q 018453          217 YGASTPLAVIMGMGMWW-LPA  236 (355)
Q Consensus       217 ~~~~~~~~~~~~~~~~~-~~e  236 (355)
                      |++..+++++..+.... .|+
T Consensus       167 f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        167 FLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC
Confidence            99987776665544433 444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.83  E-value=3e-18  Score=158.84  Aligned_cols=148  Identities=24%  Similarity=0.286  Sum_probs=134.9

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~  134 (355)
                      ..+.++.+..+......++.+|.+.++       +|.|..+.|++.+.+.+++.+++++.|+++||+|||+.+..+.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~lp~~~~~-------~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~   81 (381)
T PRK03633          9 LLLLCGLLLLTLAIAVLNTLVPLWLAQ-------EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIF   81 (381)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            334455666777888888999999886       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018453          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (355)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  209 (355)
                      +++.++.+++++++.++++|++.|++.+...+.....+.+..++++|+++++++..+..+|..+|+.+++.+.+.
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633         82 AAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            999999999999999999999999999988888888888999999999999999999999999999999988764

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.83  E-value=1.8e-18  Score=160.97  Aligned_cols=158  Identities=22%  Similarity=0.298  Sum_probs=141.3

Q ss_pred             ccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 018453           72 SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMV  151 (355)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~  151 (355)
                      .+.+|.+.++       +|.+..+.++..+.+.++..+++++.|+++||+|||+.++.+.++..++.++..+.++++.++
T Consensus        23 ~~~lp~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~   95 (392)
T PRK10473         23 LVGLPRIAAD-------LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFL   95 (392)
T ss_pred             hhhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            3567777765       899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHH-
Q 018453          152 VGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG-  230 (355)
Q Consensus       152 ~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~-  230 (355)
                      +.|++.|++.+...+....++.|++|+++|++++++.+....+|..++|.+++.+.+.. +|++.|++.++++++..+. 
T Consensus        96 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-g~~~~~~~~~~~~~i~~~~~  174 (392)
T PRK10473         96 AGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-PWQSLFYTMAAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ChHHHHHHHHHHHHHHHHHH
Confidence            99999999999889999999999999999999999999999999999999998887776 8999999988777665444 


Q ss_pred             Hhhcccc
Q 018453          231 MWWLPAS  237 (355)
Q Consensus       231 ~~~~~es  237 (355)
                      .+++||+
T Consensus       175 ~~~~~~~  181 (392)
T PRK10473        175 LFILKET  181 (392)
T ss_pred             HHHcCCC
Confidence            4456665

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.82  E-value=1.4e-18  Score=161.69  Aligned_cols=145  Identities=14%  Similarity=0.089  Sum_probs=127.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      ++.+..+.+++.+.+.+++.++.++.|+++||+|||++++++.++.+++.+++.+..+.   ++.|+++|++.+...+..
T Consensus        33 ~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~  109 (393)
T PRK11195         33 LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAK  109 (393)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            68888999999999999999999999999999999999999999999888877776554   678999999999999999


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcccch
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP  238 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp  238 (355)
                      ..++.|++|+++|++++++.+....+|.++||.+++.+.+.  .|+..+.+.+.+.++..+..+.+||+|
T Consensus       110 ~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~~~~~~~~~~~~~l~~~~  177 (393)
T PRK11195        110 YGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCALIYLLAALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999999999999999999999999874  477777766655555555556677765

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.82  E-value=1.6e-18  Score=160.30  Aligned_cols=161  Identities=17%  Similarity=0.281  Sum_probs=144.4

Q ss_pred             ccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 018453           70 STSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFII  149 (355)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~  149 (355)
                      ...+.+|.+.++       +|++..+.+++.+++.++..++.++.|+++||+|||+.+..+.++.+++.+++.+.++++.
T Consensus         9 ~~~p~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~   81 (377)
T PRK11102          9 MYLPALPVIAAD-------FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQ   81 (377)
T ss_pred             HHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence            345667777765       8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHH
Q 018453          150 MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM  229 (355)
Q Consensus       150 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~  229 (355)
                      +++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..++|.+++.+.+.. +||+.|++.++++++..+
T Consensus        82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~  160 (377)
T PRK11102         82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-SWHAIFWVLALAAILAAA  160 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998876 899999988887776544


Q ss_pred             H-Hhhcccch
Q 018453          230 G-MWWLPASP  238 (355)
Q Consensus       230 ~-~~~~~esp  238 (355)
                      . .++.||++
T Consensus       161 ~~~~~~~~~~  170 (377)
T PRK11102        161 LVFFFIPETL  170 (377)
T ss_pred             HHHHhCCccC
Confidence            3 44566653

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.82  E-value=1.9e-18  Score=163.76  Aligned_cols=157  Identities=14%  Similarity=0.147  Sum_probs=136.3

Q ss_pred             cccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHH
Q 018453           69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI  148 (355)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~  148 (355)
                      ...+..++.+.++       +|++..+.+++.+.+.++..++.++.|+++||+|||+.++.+.++.+++.++++++++++
T Consensus        36 ~~~~~~~~~i~~~-------~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~  108 (455)
T TIGR00892        36 KAVTVFFKELQQI-------FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVI  108 (455)
T ss_pred             cchhhhHHHHHHH-------hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHH
Confidence            4456667777765       899999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHH-HHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHH
Q 018453          149 IMVV-GRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM  227 (355)
Q Consensus       149 ~~~~-~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~  227 (355)
                      .+++ .|++.|++.+...+....++.++++ ++|++++++.+.+..+|..++|.+++.+.+.. |||+.|++.+++.++.
T Consensus       109 ~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-gwr~~f~~~~~~~~~~  186 (455)
T TIGR00892       109 ELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-GWRGSFLILGGLLLHC  186 (455)
T ss_pred             HHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence            8765 5789999988776777788889996 78999999999999999999999999988877 9999999998887765


Q ss_pred             HHHHhhc
Q 018453          228 GMGMWWL  234 (355)
Q Consensus       228 ~~~~~~~  234 (355)
                      .+..+++
T Consensus       187 ~v~~~~~  193 (455)
T TIGR00892       187 CVCGALM  193 (455)
T ss_pred             HHHHHHh
Confidence            5544443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.81  E-value=2.3e-18  Score=160.59  Aligned_cols=159  Identities=20%  Similarity=0.220  Sum_probs=133.3

Q ss_pred             HHhhhhhcccccccccc-cCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 018453           62 LLYGYDIGSTSCATISI-ESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV  140 (355)
Q Consensus        62 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~  140 (355)
                      +...+......+.+|.. .++       +|.|..+.|++.+++.+++.+++++.|+++||+|||++++.+.++.+++.++
T Consensus        25 ~~~~~~~~~~~~~l~~~i~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~   97 (399)
T PRK05122         25 FISYLTIGLPLAVLPGYVHDQ-------LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLL   97 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-------cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHH
Confidence            33444455556667764 343       7999999999999999999999999999999999999999999888877665


Q ss_pred             HHhh--------hhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018453          141 TALA--------PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG  212 (355)
Q Consensus       141 ~~~~--------~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~  212 (355)
                      +.+.        .+++.+++.|++.|++.+...+....++.|+.|+++|++++++......+|.++|+.+++.+.+.. +
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g  176 (399)
T PRK05122         98 YLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG-G  176 (399)
T ss_pred             HHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc-c
Confidence            5442        246688999999999999999999999999999999999999999999999999999999998877 8


Q ss_pred             hhHHHHhHHHHHHHHH
Q 018453          213 WRYMYGASTPLAVIMG  228 (355)
Q Consensus       213 w~~~~~~~~~~~~~~~  228 (355)
                      |++.+++.+++.++..
T Consensus       177 ~~~~~~~~~~~~~~~~  192 (399)
T PRK05122        177 LAGLGLLIMLLALLGL  192 (399)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998887666554433

>PRK12382 putative transporter; Provisional

Probab=99.81  E-value=7.9e-18  Score=156.63  Aligned_cols=150  Identities=17%  Similarity=0.243  Sum_probs=126.4

Q ss_pred             hhcccccccccc-cCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh--
Q 018453           67 DIGSTSCATISI-ESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL--  143 (355)
Q Consensus        67 ~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~--  143 (355)
                      ......+.+|.+ .++       +|+|..+.|++.+++.+++.+++++.|+++||+|||+.++.+.++..++.+....  
T Consensus        30 ~~~~~~p~l~~~l~~~-------lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~  102 (392)
T PRK12382         30 TVGLPLPVIPLFVHHD-------LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAA  102 (392)
T ss_pred             HHHHHhhhhhHHHHHh-------cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhh
Confidence            444555666654 343       8999999999999999999999999999999999999999988877766543221  


Q ss_pred             ------hhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH
Q 018453          144 ------APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMY  217 (355)
Q Consensus       144 ------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~  217 (355)
                            ..+++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.+++|++++.+.+.. ||++.+
T Consensus       103 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~~  181 (392)
T PRK12382        103 ILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF-GFAALA  181 (392)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHH
Confidence                  2578889999999999999888888899999999999999999999999999999999999988776 899877


Q ss_pred             HhHHHHH
Q 018453          218 GASTPLA  224 (355)
Q Consensus       218 ~~~~~~~  224 (355)
                      .+..+..
T Consensus       182 ~~~~~~~  188 (392)
T PRK12382        182 LTTMVLP  188 (392)
T ss_pred             HHHHHHH
Confidence            6654443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.80  E-value=1.1e-17  Score=155.90  Aligned_cols=146  Identities=21%  Similarity=0.245  Sum_probs=132.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|++..+.|++.+...++..+.+++.|+++||+|||+.+..+.++.+++.+++.+.++++.+++.|++.|++.+...+..
T Consensus        41 ~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~  120 (400)
T PRK11646         41 LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPR  120 (400)
T ss_pred             hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHH-Hhhccc
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG-MWWLPA  236 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e  236 (355)
                      ..++.|++|+++|++++++......+|..+||.+++.+. .. +|++.|++.++.+++..+. .++.||
T Consensus       121 ~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~-g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        121 TALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY-DFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999999999999999999999999999998 54 8999999888776665433 333443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.80  E-value=1.1e-17  Score=154.51  Aligned_cols=171  Identities=22%  Similarity=0.190  Sum_probs=138.6

Q ss_pred             HHHhhhhhccccccccccc-CCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHH
Q 018453           61 GLLYGYDIGSTSCATISIE-SPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL-AALLYLVGA  138 (355)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~l~~~~~  138 (355)
                      ++..++......+.+|.+. ++       +|.+..+.|++.+.+.++..+.+++.|.++||+|||+.+++ +.++.+++.
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~   78 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEE-------VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALAC   78 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            4555556666667777654 43       79999999999999999999999999999999999886554 566666777


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHH--HHHHHHHHHHHHHHHHHHHHHhhccccchhHH
Q 018453          139 LVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQL--ISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM  216 (355)
Q Consensus       139 ~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~--~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~  216 (355)
                      ++.+++++++.+++.|++.|.+.+...+....+..|+.|++.|+..  .+....+.++|.++++.+++.+.+.. +||+.
T Consensus        79 ~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~  157 (375)
T TIGR00899        79 LLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF-GFTVM  157 (375)
T ss_pred             HHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-ccHHH
Confidence            7888889999999999999888777788888888999887777754  57788888999999999999998876 89999


Q ss_pred             HHhHHHHHHHHHHH-Hhhcccchh
Q 018453          217 YGASTPLAVIMGMG-MWWLPASPR  239 (355)
Q Consensus       217 ~~~~~~~~~~~~~~-~~~~~esp~  239 (355)
                      |++.+++.++..+. ++++||.|+
T Consensus       158 f~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       158 FLTAALAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccc
Confidence            99988877765544 445787653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00896 CynX cyanate transporter

Probab=99.79  E-value=1.2e-17  Score=153.36  Aligned_cols=149  Identities=21%  Similarity=0.226  Sum_probs=130.5

Q ss_pred             cccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHH
Q 018453           69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI  148 (355)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~  148 (355)
                      ...++.+|.+.++       +|++..+.+++.+.+.+++.++.++.|+++||+|||+.+.++.++..++.++. ..++.+
T Consensus        17 ~~~~~~lp~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~   88 (355)
T TIGR00896        17 TSVGPLLPQIRSA-------LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTA   88 (355)
T ss_pred             ccCcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHH
Confidence            4567788888876       89999999999999999999999999999999999999999998888888777 678889


Q ss_pred             HHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chhHHHHhHHHHHHH
Q 018453          149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA-GWRYMYGASTPLAVI  226 (355)
Q Consensus       149 ~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~-~w~~~~~~~~~~~~~  226 (355)
                      .+++.|++.|++.+...+..+.++.|++| ++|++++++.+....+|..+++.+.+.+.+... +||+.|.+.+++.++
T Consensus        89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896        89 LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            99999999999999888888888999886 689999999999999999999999988876542 499998876655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10054 putative transporter; Provisional

Probab=99.79  E-value=1.5e-17  Score=154.89  Aligned_cols=147  Identities=18%  Similarity=0.207  Sum_probs=131.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|++..+.|++.+.+.++..+++++.|+++||+|||+.++++.++.+++.++.++.++++.++++|++.|.+.+...+..
T Consensus        38 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  117 (395)
T PRK10054         38 YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVL  117 (395)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999989999999988889999998888788888


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHH-hhcccc
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM-WWLPAS  237 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~es  237 (355)
                      ..+..|..|+++|++++++.....++|.+++|.+++.+.. . +|+..|++.+++.++..+.. +++|++
T Consensus       118 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~-g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        118 KAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q-SINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999998875 4 89999998887777654433 335543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.79  E-value=3.9e-17  Score=152.64  Aligned_cols=169  Identities=20%  Similarity=0.153  Sum_probs=140.4

Q ss_pred             HHHHhhhhhcccccccccccCCCCCCCccccCChhH-----HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453           60 GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVE-----IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (355)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~  134 (355)
                      +.++.+.......+.+|.+.++       +|++..+     .+++.++..++..+++++.|+++||+|||+.++.+.++.
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   94 (408)
T PRK09874         22 GCFLTGAAFSLVMPFLPLYVEQ-------LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGM   94 (408)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHH-------hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence            3344455555566777777765       6776543     488999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 018453          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR  214 (355)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  214 (355)
                      +++.++..+.++++.+++.|++.|++.+ ..+....++.+.+|+++|++++++......+|.+++|.+++.+.+.. +||
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~  172 (408)
T PRK09874         95 GIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY-GLR  172 (408)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHH
Confidence            9999888888999999999999999865 45677788899999999999999999999999999999999988876 899


Q ss_pred             HHHHhHHHHHHHHHHHH-hhcccc
Q 018453          215 YMYGASTPLAVIMGMGM-WWLPAS  237 (355)
Q Consensus       215 ~~~~~~~~~~~~~~~~~-~~~~es  237 (355)
                      +.|++.+++.++..+.. ++++|+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        173 PVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999888776655443 445554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.78  E-value=2e-17  Score=158.42  Aligned_cols=176  Identities=16%  Similarity=0.026  Sum_probs=136.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHhhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV---TALAPDFIIMVVGRFVFGIGIGLAM  165 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~r~l~G~~~g~~~  165 (355)
                      +|++..+.++..+...++..++.++.|+++||+|||+.+.++.++..+..+.   ....++...+++++++.|++.+...
T Consensus       281 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  360 (490)
T PRK10642        281 LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFT  360 (490)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            6788888888888889999999999999999999999888777654433322   2223456777888999998888777


Q ss_pred             hHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcccchhHHHHhh
Q 018453          166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCA  245 (355)
Q Consensus       166 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~  245 (355)
                      .....++.|.+|++.|++++++.+....+++.++|.+.+++.+..++|+..+++..+++++.++..+++||+|+|+.++.
T Consensus       361 g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~  440 (490)
T PRK10642        361 GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGA  440 (490)
T ss_pred             HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence            77888899999999999999985555666678899999988876546887777777777777777777899999876542


Q ss_pred             ccccCchhhhHHHHHHHHHHHhC
Q 018453          246 MKRKGDMQDLRESAISCLCRLRG  268 (355)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~  268 (355)
                      .    +.+++.+|+++.++++++
T Consensus       441 ~----~~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        441 T----PAASDIQEAKEILVEHYD  459 (490)
T ss_pred             c----ccccchhhHHHHhhcccc
Confidence            1    123467899999999984

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1e-17  Score=149.81  Aligned_cols=216  Identities=18%  Similarity=0.125  Sum_probs=172.3

Q ss_pred             cccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhh---H
Q 018453           71 TSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD---F  147 (355)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~---~  147 (355)
                      .++..+.+.++       +|+|+.|.+++.++..+...+..++.|.+.||||.|++..++.++..+..+..+++..   +
T Consensus        33 ~s~l~~~i~~~-------~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~  105 (417)
T COG2223          33 FSPLGVFIKSD-------FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPST  105 (417)
T ss_pred             HHHHHhhhccc-------cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCch
Confidence            34444555554       8999999999999999999999999999999999999999999999999999988754   5


Q ss_pred             HHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccc---hhHHHHhHHHHH
Q 018453          148 IIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG---WRYMYGASTPLA  224 (355)
Q Consensus       148 ~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~---w~~~~~~~~~~~  224 (355)
                      +.+++.+++.|++.+ .+.+...++++++|++++|.++|+.. ..++|..+...++..++... +   |+.+..+..+..
T Consensus       106 ~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~-g~~~w~~~~~i~~~~l  182 (417)
T COG2223         106 WQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF-GFLAWRNVAGIYVVAL  182 (417)
T ss_pred             HHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence            599999999999755 67788889999999999999999999 99999999988888888777 6   999998888887


Q ss_pred             HHHHH-HHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcc
Q 018453          225 VIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHG  303 (355)
Q Consensus       225 ~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (355)
                      ++..+ .++...|.|+.....                                             ++..+..++.++++
T Consensus       183 ~v~~v~~~~~~~d~p~~r~~~---------------------------------------------~~~~~~~~~~v~~~  217 (417)
T COG2223         183 AIAAVLAWLGMNDVPEHRASV---------------------------------------------KPQLPAQLKAVFSN  217 (417)
T ss_pred             HHHHHHHHHHhCCChhhhccc---------------------------------------------cccchhHHHHHhcC
Confidence            77544 455577776531100                                             01111456677877


Q ss_pred             cchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhccccchh
Q 018453          304 KCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLMQH  345 (355)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (355)
                      ++.|.+.+..+..|.    ++.+++.|.|.++++..+....+
T Consensus       218 ~~~W~lsllY~~tFG----~Fvgfs~~l~~~~~~~fg~~~~~  255 (417)
T COG2223         218 KDTWLLSLLYFATFG----GFVGFSAYLPMYLVTQFGLSPVT  255 (417)
T ss_pred             cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCChhh
Confidence            777776665555554    57889999999999887765544

>TIGR00897 2A0118 polyol permease family

Probab=99.78  E-value=3.5e-17  Score=152.83  Aligned_cols=134  Identities=15%  Similarity=0.135  Sum_probs=116.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH---h-hhhHHHHHHHHHHHHHHHhhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA---L-APDFIIMVVGRFVFGIGIGLA  164 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~---~-~~~~~~~~~~r~l~G~~~g~~  164 (355)
                      +|++..+.+++.+.+.+++.+++++.|++.||+|||+.+..+.++.++++++..   + .++++.+++.|++.|++.+..
T Consensus        43 ~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~  122 (402)
T TIGR00897        43 LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLF  122 (402)
T ss_pred             hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHH
Confidence            799999999999999999999999999999999999999999999888876543   3 257888889999999998887


Q ss_pred             HhHHHHHHHhhcCCCchhHHHHHHHHHHHHHH-HHHHHHHHHhhccccchhHHHHhHHHH
Q 018453          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGM-VGGYGIGSLLVDLVAGWRYMYGASTPL  223 (355)
Q Consensus       165 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~i~~~l~~~~~~w~~~~~~~~~~  223 (355)
                      .+....++.+++|+++|++++|+.+.+.++|. .+++.+++.+.+.. ||+..++.....
T Consensus       123 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~-g~~~~~~~~~~~  181 (402)
T TIGR00897       123 AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF-GEMNTLWSALAF  181 (402)
T ss_pred             HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHH
Confidence            77788888999999999999999999999997 68999998888776 776665544433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.78  E-value=3.6e-17  Score=149.02  Aligned_cols=170  Identities=35%  Similarity=0.521  Sum_probs=151.9

Q ss_pred             HHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 018453           58 ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVG  137 (355)
Q Consensus        58 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~  137 (355)
                      .+..+..++......+..+.+.++       +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~   77 (352)
T cd06174           5 FLGFFLSGLDRGLLSPALPLLAED-------LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALG   77 (352)
T ss_pred             HHHHHHHHHhhhhhHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHH
Confidence            344556666666777777877775       6899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH
Q 018453          138 ALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMY  217 (355)
Q Consensus       138 ~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~  217 (355)
                      .++..+.++++.+++.|++.|++.+...+....++.|++|+++|++.+++.+....+|..+++.+++.+.+.. +|++.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~  156 (352)
T cd06174          78 SLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-GWRWLF  156 (352)
T ss_pred             HHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998876 899999


Q ss_pred             HhHHHHHHHHHHHHhhcc
Q 018453          218 GASTPLAVIMGMGMWWLP  235 (355)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~  235 (355)
                      ++.+++.++..+..++++
T Consensus       157 ~~~~~~~~~~~~~~~~~~  174 (352)
T cd06174         157 LILAILGLLLALLLLFLL  174 (352)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            998888777665554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.77  E-value=9e-18  Score=157.58  Aligned_cols=162  Identities=21%  Similarity=0.180  Sum_probs=136.5

Q ss_pred             cccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-----
Q 018453           69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL-----  143 (355)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~-----  143 (355)
                      ....+.+|.+.++       ++.+..+.|++.+.+.+++.+++++.|+++||+|||+.+..+.++.+++.++.+.     
T Consensus        34 ~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~  106 (417)
T PRK10489         34 GLLGVAVPVQIQM-------MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP  106 (417)
T ss_pred             HHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC
Confidence            3444556666554       6778999999999999999999999999999999999998888877776665432     


Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHH
Q 018453          144 APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPL  223 (355)
Q Consensus       144 ~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~  223 (355)
                      .++++.+++.|++.|++.+...+....++.|+.|+++|+++.++.+....+|..+||.+++.+.+.. +|++.|++.++.
T Consensus       107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-~~~~~~~~~~~~  185 (417)
T PRK10489        107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-GVAWNYGLAAAG  185 (417)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence            4578888899999999998888888999999999999999999999999999999999999988776 899999988877


Q ss_pred             HHHHHHHHhhcccch
Q 018453          224 AVIMGMGMWWLPASP  238 (355)
Q Consensus       224 ~~~~~~~~~~~~esp  238 (355)
                      .++..+..+.+|+++
T Consensus       186 ~~~~~~~~~~l~~~~  200 (417)
T PRK10489        186 TFITLLPLLRLPALP  200 (417)
T ss_pred             HHHHHHHHHhCCCCC
Confidence            776666666666643

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.77  E-value=3.6e-17  Score=151.53  Aligned_cols=149  Identities=24%  Similarity=0.362  Sum_probs=119.9

Q ss_pred             CChhHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHH
Q 018453           91 LSSVEIGLITSG-----SLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI--------IMVVGRFVF  157 (355)
Q Consensus        91 ~s~~~~~~~~~~-----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~r~l~  157 (355)
                      .++.+.+.+.+.     ..++..+++++.|+++||+|||+.++++.++..++.++.+++++++        .++++|++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  106 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ  106 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence            344455544432     3344457899999999999999999999999999999999988764        478899999


Q ss_pred             HHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-------cccchhHHHHhHHHHHHHHHHH
Q 018453          158 GIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD-------LVAGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       158 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~-------~~~~w~~~~~~~~~~~~~~~~~  230 (355)
                      |++.+...+....++.|++|+++|++..++.+.+..+|.++++.++..+..       ...+||+.|++.+++.++..+.
T Consensus       107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL  186 (394)
T ss_pred             HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988776542       1238999999877776665555


Q ss_pred             Hhhcccchh
Q 018453          231 MWWLPASPR  239 (355)
Q Consensus       231 ~~~~~esp~  239 (355)
                      ....+|+|+
T Consensus       187 ~~~~~~~~~  195 (394)
T TIGR00883       187 RRNLEETPV  195 (394)
T ss_pred             HHhcCCChh
Confidence            555666654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.76  E-value=2.8e-17  Score=156.36  Aligned_cols=185  Identities=18%  Similarity=0.251  Sum_probs=143.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Q 018453           46 SVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRR  125 (355)
Q Consensus        46 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~  125 (355)
                      ..++.+..+...++......+.....+..++.+..+       +|-+ ....|+.+...++..++.++.|+++|.||||.
T Consensus        38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-------iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~  109 (599)
T PF06609_consen   38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINAD-------IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY  109 (599)
T ss_pred             eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-------cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchH
Confidence            334444443334444444445555556667766665       5554 56689999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018453          126 ELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL  205 (355)
Q Consensus       126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  205 (355)
                      +++.+.++..+|+++++.++|...++++..+.|+|.|.... ....++|..|.|.|+.+.++......+....++.++..
T Consensus       110 ~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~  188 (599)
T PF06609_consen  110 FFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQL  188 (599)
T ss_pred             HHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHH
Confidence            99999999999999999999999999999999999876654 46668999999999988888877777777778888877


Q ss_pred             hhccccchhHHHHhHHHHHHHHHHHHhhcccchhH
Q 018453          206 LVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW  240 (355)
Q Consensus       206 l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~  240 (355)
                      +.... +|||.|++.++...+.++..+++...|++
T Consensus       189 ~~~~~-~WRw~~~~~~i~~~i~~vl~~~fY~PP~~  222 (599)
T PF06609_consen  189 FAAHS-GWRWIFYIFIIWSGIALVLIFFFYFPPPR  222 (599)
T ss_pred             hccCC-CcchHHHHHHHHHHHHHHHHHHHhCCCch
Confidence            76554 99999999988877766554444333443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.76  E-value=2.1e-16  Score=140.52  Aligned_cols=228  Identities=21%  Similarity=0.270  Sum_probs=184.4

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~  134 (355)
                      +.+....++.|+......+.+|++.+.       ++++..+.+++...++.|+.+++++.|++.+|+|+|+.+++++.+.
T Consensus        16 v~~t~lFfl~G~~~~l~diLip~l~~~-------f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~   88 (422)
T COG0738          16 VLLTSLFFLWGFITCLNDILIPHLKEV-------FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLY   88 (422)
T ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHHH-------hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHH
Confidence            444555677888888999999999886       9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH---hhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 018453          135 LVGALVTA---LAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL--  209 (355)
Q Consensus       135 ~~~~~~~~---~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~--  209 (355)
                      ++++.+..   ...++..++++-++.|.|.|...+..+.++....+++.-...+++.+.++++|..++|++++.++..  
T Consensus        89 avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~  168 (422)
T COG0738          89 AVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGV  168 (422)
T ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence            99999884   4567899999999999999999999999999999999899999999999999999999999998862  


Q ss_pred             ----------------ccchhHHHHhHHHHHHHHHHHHhhc--ccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCC
Q 018453          210 ----------------VAGWRYMYGASTPLAVIMGMGMWWL--PASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSI  271 (355)
Q Consensus       210 ----------------~~~w~~~~~~~~~~~~~~~~~~~~~--~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (355)
                                      ...|+..|.+.+...++..+.....  |+.+.                 ++             
T Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-----------------~~-------------  218 (422)
T COG0738         169 ALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-----------------AA-------------  218 (422)
T ss_pred             hhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-----------------cc-------------
Confidence                            1247777777666665555444332  22110                 00             


Q ss_pred             CCCchhHHHHHHHhhccccccccchhhhhhcccchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHh
Q 018453          272 GDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDF  338 (355)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (355)
                                     ++..+.+.....+++++|.++.-.++.+++...+..    +..|++.++.+.
T Consensus       219 ---------------~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva----~gsfl~~y~~~~  266 (422)
T COG0738         219 ---------------PSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVA----IGSFLVSYLEEL  266 (422)
T ss_pred             ---------------ccccccccchHHHHHhChHHHHHHHHHHHHHhHHHH----HHHHHHHHHHhc
Confidence                           000111122678899999999999999999888654    667888888774

>PTZ00207 hypothetical protein; Provisional

Probab=99.75  E-value=2.1e-16  Score=151.25  Aligned_cols=144  Identities=19%  Similarity=0.200  Sum_probs=119.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA------PDFIIMVVGRFVFGIGIG  162 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~r~l~G~~~g  162 (355)
                      +|++..+.+++.++. .....++++.|++.||+|+|++++++.++..++.++.+++      ++++.+.+.|++.|+|.+
T Consensus        57 lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~  135 (591)
T PTZ00207         57 YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCM  135 (591)
T ss_pred             hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence            899999999998773 4455678889999999999999999999999999999987      689999999999999999


Q ss_pred             hHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHH-Hhhccc
Q 018453          163 LAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG-MWWLPA  236 (355)
Q Consensus       163 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e  236 (355)
                      ...+.....+.+++| ++||+++|+...+.++|+++.+.+...+.. . +|+..|++.+++.++..++ ++++++
T Consensus       136 ~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~-~~~~~fl~l~vl~~vv~ll~~~~vr~  207 (591)
T PTZ00207        136 LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-D-NTSAYFFFLMSFALVVGILAIVFMRL  207 (591)
T ss_pred             HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHhheeC
Confidence            998999999999997 789999999999999999865554444443 2 6888888887776665443 344433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.73  E-value=6.1e-16  Score=143.49  Aligned_cols=163  Identities=17%  Similarity=0.093  Sum_probs=124.5

Q ss_pred             HHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHH
Q 018453           62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR----RELILAALLYLVG  137 (355)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~l~~~~  137 (355)
                      +.+....+...+.+|.+.++       +|.|..+.|++.+++.++..+++++.|.+.||+|||    +.+.+...+  ..
T Consensus        14 ~~~~~~~g~~~p~l~~~l~~-------~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~   84 (382)
T PRK11128         14 FGYFFAYGVFLPFWSVWLKG-------QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FA   84 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHh-------cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HH
Confidence            44444556677777877775       799999999999999999999999999999999984    222222211  12


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH
Q 018453          138 ALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMY  217 (355)
Q Consensus       138 ~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~  217 (355)
                      .......++++.+++.|++.|++.+...+....+..++  .++|++..+....+..+|.++||++++.+.+.. |||..|
T Consensus        85 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~-g~~~~f  161 (382)
T PRK11128         85 VAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF-GEQAIL  161 (382)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc-ChhHHH
Confidence            22333457899999999999999888888877777776  356888888899999999999999999999887 999999


Q ss_pred             HhHHHHHHHHHHHHhhccc
Q 018453          218 GASTPLAVIMGMGMWWLPA  236 (355)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~e  236 (355)
                      ++.++..++..+..++.||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~  180 (382)
T PRK11128        162 WILTAGVASMLLGQLLRPT  180 (382)
T ss_pred             HHHHHHHHHHHHHHHccCC
Confidence            8877655444443333443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.72  E-value=1.1e-16  Score=151.70  Aligned_cols=163  Identities=18%  Similarity=0.123  Sum_probs=140.3

Q ss_pred             HHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 018453           62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT  141 (355)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~  141 (355)
                      +.+|... ..+...+.+.++       ++.+..+.+|+.++......+..++.+.+.||+|.|.+.++|.++..++.++.
T Consensus        57 ~~~g~~~-~~Gv~~~~~~~~-------f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~ls  128 (509)
T KOG2504|consen   57 STDGLIN-SFGLLFEELMDY-------FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLS  128 (509)
T ss_pred             hhhcchh-eehhhHHHHHHH-------hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHH
Confidence            3334333 344556666665       78888899999999999999999999999999999999999999999999999


Q ss_pred             HhhhhHHHHHHH-HHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhH
Q 018453          142 ALAPDFIIMVVG-RFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAS  220 (355)
Q Consensus       142 ~~~~~~~~~~~~-r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~  220 (355)
                      .+++++|.+++. -++.|+|.|..+......+..++. ++|+.+.|+...+.++|.++-|.+...+.+.. |||+.+++.
T Consensus       129 sF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~-G~r~~~l~~  206 (509)
T KOG2504|consen  129 SFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKY-GWRGALLIF  206 (509)
T ss_pred             HHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHh-CcHHHHHHH
Confidence            999999877764 488999999999999999998875 77999999999999999999999999999998 999999998


Q ss_pred             HHHHHHHHHHHhhc
Q 018453          221 TPLAVIMGMGMWWL  234 (355)
Q Consensus       221 ~~~~~~~~~~~~~~  234 (355)
                      +.+.+-.++..+..
T Consensus       207 ~~~~l~~~~~~~~~  220 (509)
T KOG2504|consen  207 GGISLNVLVAGALL  220 (509)
T ss_pred             HHHHHHHHHHHHHc
Confidence            88877665554443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.72  E-value=9.5e-16  Score=142.19  Aligned_cols=156  Identities=12%  Similarity=-0.003  Sum_probs=123.3

Q ss_pred             HHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHH
Q 018453           59 LGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL-LYLVG  137 (355)
Q Consensus        59 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~-l~~~~  137 (355)
                      +..+.+....+...+.+|.+.++       +|.|..+.|++.+++.+...+++++.|.++||+||+........ ...+.
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~-------~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~   83 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKG-------IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIF   83 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            34455555556677788888876       89999999999999999999999999999999998544322211 11122


Q ss_pred             H-HHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHH
Q 018453          138 A-LVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM  216 (355)
Q Consensus       138 ~-~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~  216 (355)
                      . .....+++++.+++.|++.|.+.+...+....+..++  .++|++.++....+.++|.+++|++++.+.+.. |||..
T Consensus        84 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-g~~~~  160 (382)
T TIGR00902        84 AAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-DEQNI  160 (382)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-ChhHH
Confidence            2 2334568899999999999998888888888887665  467899999999999999999999999999887 99999


Q ss_pred             HHhHHHHH
Q 018453          217 YGASTPLA  224 (355)
Q Consensus       217 ~~~~~~~~  224 (355)
                      |++..+..
T Consensus       161 f~~~~~~~  168 (382)
T TIGR00902       161 LAILTAGL  168 (382)
T ss_pred             HHHHHHHH
Confidence            98766553

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.72  E-value=6.2e-16  Score=162.75  Aligned_cols=148  Identities=18%  Similarity=0.141  Sum_probs=120.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA---LAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        92 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +....+++.+++.++++++++++|+++||+|||++++++.++.++..++..   ..++++.++++|++.|++.+...+..
T Consensus        45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  124 (1146)
T PRK08633         45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK  124 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence            455679999999999999999999999999999999988877665555443   34678999999999999999999999


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc--------ccchhHHHHhHHHHH-HHHHHHHhhcccchh
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL--------VAGWRYMYGASTPLA-VIMGMGMWWLPASPR  239 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~--------~~~w~~~~~~~~~~~-~~~~~~~~~~~esp~  239 (355)
                      ..++.|++|+++|++++++...+..+|.++|+++++++...        ..+|.+.+.+.++.. ++.+++.+.+|++|+
T Consensus       125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (1146)
T PRK08633        125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA  204 (1146)
T ss_pred             HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence            99999999999999999999999999999999999998865        324555444443333 334444455677654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.72  E-value=2e-16  Score=139.04  Aligned_cols=148  Identities=24%  Similarity=0.257  Sum_probs=122.4

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHH
Q 018453           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP  169 (355)
Q Consensus        90 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  169 (355)
                      +.+....|++.+.++++..+.++.+|.++||+|||.+++++.+..++..++.+++.|+..++++|++.|+..| ...+.-
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r  142 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR  142 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence            5567788999999999999999999999999999999999999999999999999999777788999999888 556668


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc---cccchhHHH--HhHHHHHHH-HHHHHhhcccch
Q 018453          170 MYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD---LVAGWRYMY--GASTPLAVI-MGMGMWWLPASP  238 (355)
Q Consensus       170 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~---~~~~w~~~~--~~~~~~~~~-~~~~~~~~~esp  238 (355)
                      ++++|.+++|+|+.+++.+.+.+++|-++||++++++..   ..+.+...+  ++..+.+.. .....+++||+-
T Consensus       143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            899999999999999999999999999999999999987   222222222  122222222 233456689983

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.71  E-value=2.3e-15  Score=143.85  Aligned_cols=169  Identities=20%  Similarity=0.195  Sum_probs=136.8

Q ss_pred             HHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHH-HHHHHHHH
Q 018453           61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-----GRRRE-LILAALLY  134 (355)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~l~  134 (355)
                      ++..|......+..+|...++       .|.+..+.+.+ +.....+ ++++++|.++||+     |||+. ++++.++.
T Consensus        21 ~~~~gl~~~~~~~~l~~~l~~-------~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~   91 (491)
T PRK11010         21 GFASGLPLALTSGTLQAWMTV-------ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL   91 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-------CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence            345555666677778877775       68898899887 3333443 6899999999999     99885 55777777


Q ss_pred             HHHHHHHHhh---hhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018453          135 LVGALVTALA---PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA  211 (355)
Q Consensus       135 ~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~  211 (355)
                      +++..+.++.   ++++.+.+.+++.|++.+...+....+..|++|+++|+++.++...+..+|.++++.++..+.+...
T Consensus        92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~  171 (491)
T PRK11010         92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL  171 (491)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            7777776664   4678888899999999999999999999999999999999999999999999999999999988433


Q ss_pred             chhHHHHhHHHHHHHHHHHHhhcccch
Q 018453          212 GWRYMYGASTPLAVIMGMGMWWLPASP  238 (355)
Q Consensus       212 ~w~~~~~~~~~~~~~~~~~~~~~~esp  238 (355)
                      |||..|++.+++.++..+..+++||++
T Consensus       172 GWr~~f~i~a~l~ll~~l~~~~~~e~~  198 (491)
T PRK11010        172 GWQGMYWLMAALLIPCIIATLLAPEPT  198 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            999999998888777666656677754

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.71  E-value=8.7e-16  Score=161.41  Aligned_cols=145  Identities=15%  Similarity=0.060  Sum_probs=118.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHH
Q 018453           93 SVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL---AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP  169 (355)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  169 (355)
                      ....++..+++.+.++++++++|+++||+|||+++..   ..++..+..++....++++.++++|+++|++.+...+...
T Consensus        51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~  130 (1140)
T PRK06814         51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY  130 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence            3557888999999999999999999999999997533   2222222223333347899999999999999999999999


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcccch
Q 018453          170 MYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP  238 (355)
Q Consensus       170 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp  238 (355)
                      +++.+++|+++|++++++.+++..+|.++||++++++.... +|++.|++.+++.++.+++.+++|+++
T Consensus       131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG-NFVILVALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            99999999999999999999999999999999999999876 999999655555555555666666653

>TIGR00901 2A0125 AmpG-related permease

Probab=99.71  E-value=1e-15  Score=140.48  Aligned_cols=158  Identities=15%  Similarity=0.085  Sum_probs=126.0

Q ss_pred             ccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHH-HHHHHHHHHHHHHHHh
Q 018453           70 STSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-----GRRREL-ILAALLYLVGALVTAL  143 (355)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~~-~~~~~l~~~~~~~~~~  143 (355)
                      ..++.+|.+.++       .|+|.++.+++... .+...+ .+++|.+.||+     |||+.+ +.+.++.++.....++
T Consensus         6 ~~~~~~~~~~~~-------~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~   76 (356)
T TIGR00901         6 LVGNTLPYWLRS-------KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF   76 (356)
T ss_pred             hHHhHHHHHHHH-------cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence            345556666665       79999999999755 444444 89999999998     898874 5677777777666666


Q ss_pred             h---hhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccc--------
Q 018453          144 A---PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG--------  212 (355)
Q Consensus       144 ~---~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~--------  212 (355)
                      .   .+.+.+....++.+++.+...+....++.|++|+++|+++.++...+..+|.++++.+++.+.... +        
T Consensus        77 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-g~~~~~~~~  155 (356)
T TIGR00901        77 LVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE-FANTGLITL  155 (356)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccc
Confidence            6   456667777788888888888999999999999999999999999999999999999999888766 5        


Q ss_pred             hhHHHHhHHHHHHHHHHHHhh-cccc
Q 018453          213 WRYMYGASTPLAVIMGMGMWW-LPAS  237 (355)
Q Consensus       213 w~~~~~~~~~~~~~~~~~~~~-~~es  237 (355)
                      ||..|++.+++.++..+..++ .||+
T Consensus       156 wr~~f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       156 WGYIFFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            999999988877776555444 4553

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.70  E-value=2.5e-15  Score=140.32  Aligned_cols=169  Identities=20%  Similarity=0.179  Sum_probs=139.8

Q ss_pred             HHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHH-HHHHHHHHH
Q 018453           61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-----GRRR-ELILAALLY  134 (355)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~l~  134 (355)
                      ++..|+..+.....+|.+.++       .|++.++.|++..+...  .+.++++|+++||+     |||| .++++.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~-------~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~   78 (402)
T PRK11902          8 GFASGLPLALTSGTLQAWMTV-------EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGL   78 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHH
Confidence            455666677777888888886       69999999999777665  69999999999999     7875 677778888


Q ss_pred             HHHHHHHHhh---hhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018453          135 LVGALVTALA---PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA  211 (355)
Q Consensus       135 ~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~  211 (355)
                      +++..+.++.   .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+...
T Consensus        79 ~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~  158 (402)
T PRK11902         79 AASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVL  158 (402)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Confidence            7777777775   3577778888888888888899999999999999999999999999999999999999998887544


Q ss_pred             chhHHHHhHHHHHHHHHHHHhhcccch
Q 018453          212 GWRYMYGASTPLAVIMGMGMWWLPASP  238 (355)
Q Consensus       212 ~w~~~~~~~~~~~~~~~~~~~~~~esp  238 (355)
                      |||..|++.+++.++..+..++.||++
T Consensus       159 gw~~~f~i~a~~~l~~~l~~~~~~e~~  185 (402)
T PRK11902        159 GWGNTYLLMAGLMLAGALTTLWAPEPE  185 (402)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            899999998887766655555666653

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.70  E-value=7.9e-16  Score=146.63  Aligned_cols=146  Identities=14%  Similarity=0.148  Sum_probs=126.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHhhHHh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFI-IMVVGRFVFGIGIGLAMH  166 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~r~l~G~~~g~~~~  166 (355)
                      +|++..+.+++.+.+.....+..+++|+++|| +|||+.++++.++..++.++++++.+.. .++++|+++|+|.|...+
T Consensus        45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~  124 (489)
T PRK10207         45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKA  124 (489)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccC
Confidence            79999999999999998888889999999999 9999999999999999999998876644 455899999999999999


Q ss_pred             HHHHHHHhhcCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcc
Q 018453          167 AAPMYIAETAPTP--MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLP  235 (355)
Q Consensus       167 ~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  235 (355)
                      ....++.|.+|++  +|+.++++++.+.++|.++||.+++++.+.. |||+.|++.++..++.++.+++.+
T Consensus       125 ~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-gw~~~F~i~~i~~~~~~~~~~~~~  194 (489)
T PRK10207        125 NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-GYSVTYNLCGAGLIIALLVYFACR  194 (489)
T ss_pred             CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999887  4578999999999999999999999999887 899999987654444444444443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.6e-16  Score=140.56  Aligned_cols=145  Identities=19%  Similarity=0.314  Sum_probs=137.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      .+-+.++.|++.+...+..++.+++.|.+.||+|+|..+++|++++..++++.++..++++++++|.++|+|.+...+..
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhc
Q 018453          169 PMYIAETAPTPM-RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (355)
Q Consensus       169 ~~~~~e~~~~~~-r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  234 (355)
                      ..++++.+|.+. |++++|....+.++|..+||++++.+.+.. |.+..|++.++++++...+.+++
T Consensus       181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCcCcHHHHHHHHHHHHHHHHhe
Confidence            999999999866 799999999999999999999999999987 99999999999999977776664

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.69  E-value=1.6e-15  Score=144.29  Aligned_cols=145  Identities=12%  Similarity=0.122  Sum_probs=131.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      +|++..+.+++.+.+.++..++++++|+++|| +|||+.++++.++.+++.++.+++++.+.++++|++.|++.|...+.
T Consensus        43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~  122 (475)
T TIGR00924        43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN  122 (475)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence            68999999999999999999999999999999 89999999999999999999998888888889999999999999999


Q ss_pred             HHHHHHhhcCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhc
Q 018453          168 APMYIAETAPTPM---RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (355)
Q Consensus       168 ~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  234 (355)
                      ...++++++|+++   |+.+.++++.+.++|.++||++++.+.+.. ||++.|++.++..+++.+.+++.
T Consensus       123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-g~~~~f~~~~~~~~~~~l~~~~~  191 (475)
T TIGR00924       123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-GYHVGFNLAAVGMVIGLLTFFAG  191 (475)
T ss_pred             HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999998764   888999999999999999999999998877 89999999886665555444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.69  E-value=1e-14  Score=128.05  Aligned_cols=232  Identities=23%  Similarity=0.166  Sum_probs=187.1

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~  134 (355)
                      ....+..+..--..+..++.++.+.++       +|+|.+..|+++++..+...+.+++..++..|+|.++.+..++++.
T Consensus        15 ~gIvlia~NLR~~itsvgPLL~~Ir~~-------~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli   87 (395)
T COG2807          15 AGIVLIAFNLRPAITSVGPLLDEIRQD-------LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLI   87 (395)
T ss_pred             HHHHHHHhccchhhhhhhhhHHHHHHH-------hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHH
Confidence            333344444455677788999999887       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 018453          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR  214 (355)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  214 (355)
                      .++.++-... +...++.+-.+.|.|.+...+..+..+.+.+|+ +-+..++++.+..++|+.+++.++..+.++..+||
T Consensus        88 ~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~  165 (395)
T COG2807          88 AAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWR  165 (395)
T ss_pred             HHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHH
Confidence            9999999886 788899999999999999999999999999985 57999999999999999999999999888776899


Q ss_pred             HHHHhHHHHHHHHHHHHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhcccccccc
Q 018453          215 YMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKE  294 (355)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (355)
                      ..+.+-+.++++++++|+.  ...|..   .                                          ...+.+.
T Consensus       166 ~aL~~WAl~allAl~~WlP--q~~r~~---~------------------------------------------~~~~~~~  198 (395)
T COG2807         166 GALGFWALLALLALLIWLP--QALREQ---A------------------------------------------ASIATKL  198 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhh--hccccc---c------------------------------------------ccccccc
Confidence            9999999998888876543  211100   0                                          0012233


Q ss_pred             chhhhhhcccchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhccccchhh
Q 018453          295 VSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLMQHG  346 (355)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (355)
                      .+...+|++|.-|..    .+++..|....|....|+|.|+.+.+-+-+..+
T Consensus       199 ~~~~~vw~~~~aW~v----tLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG  246 (395)
T COG2807         199 VSVRKVWRSPLAWQV----TLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAG  246 (395)
T ss_pred             ccccccccCchhHHH----HHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhh
Confidence            444567887654444    445666666789999999999999987754443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.68  E-value=2.1e-14  Score=133.77  Aligned_cols=148  Identities=20%  Similarity=0.210  Sum_probs=112.7

Q ss_pred             ccCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHh
Q 018453           89 YDLSSVEIGLITSGSLY-GALIGSILAFNIADILGRRRELI-LAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMH  166 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  166 (355)
                      +|++.++.|++.+...+ +++++.+++++ .||+|||+.++ .+.++..++..+.+++++++.+++.+.+.|...+...+
T Consensus        46 ~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  124 (393)
T PRK15011         46 VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANP  124 (393)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence            89999999999776544 66666666666 99999998754 55566667777778888888877666555555556677


Q ss_pred             HHHHHHHhhcCCCch--hHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHH-Hhhcccch
Q 018453          167 AAPMYIAETAPTPMR--GQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG-MWWLPASP  238 (355)
Q Consensus       167 ~~~~~~~e~~~~~~r--~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~esp  238 (355)
                      ....+..++.+++.|  +...++.+.+.++|.++||++++.+.+.. |||..|++.++.+++..+. ++++||.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        125 QMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-SFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            778888888776655  34557889999999999999999998877 9999999988877665444 44567654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.67  E-value=1.4e-14  Score=135.12  Aligned_cols=157  Identities=15%  Similarity=0.095  Sum_probs=115.9

Q ss_pred             hcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH---Hhh
Q 018453           68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT---ALA  144 (355)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~---~~~  144 (355)
                      .....+.++.+..+      ++|++..+.+++.++..++..+++++.|+++||+|||+.++.+.+...+.....   .+.
T Consensus        18 ~~~~~~~~~~~~~~------~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~   91 (396)
T TIGR00882        18 MSAYFPFFPIWLHD------VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFG   91 (396)
T ss_pred             HHHHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33445555555442      179999999999999999999999999999999999999987766655443322   111


Q ss_pred             -----hhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHh
Q 018453          145 -----PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGA  219 (355)
Q Consensus       145 -----~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~  219 (355)
                           .....+++.+++.|++.+...+....+..+..+  +++...+......++|.+++|++++.+.+ . +|+..|++
T Consensus        92 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~-~~~~~f~~  167 (396)
T TIGR00882        92 PLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-I-DPQIVFWL  167 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-c-CchHHHHH
Confidence                 123345667888888888778887777777543  34556677888889999999999887765 3 89999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 018453          220 STPLAVIMGMGMWWL  234 (355)
Q Consensus       220 ~~~~~~~~~~~~~~~  234 (355)
                      .+++.++..+..++.
T Consensus       168 ~~~~~~~~~~~~~~~  182 (396)
T TIGR00882       168 GSGFALILMLLLMFA  182 (396)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888877765544443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.66  E-value=2.4e-15  Score=118.25  Aligned_cols=136  Identities=27%  Similarity=0.455  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCC
Q 018453          100 TSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP  179 (355)
Q Consensus       100 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~  179 (355)
                      .+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34567888999999999999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh-ccc
Q 018453          180 MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPA  236 (355)
Q Consensus       180 ~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~e  236 (355)
                      +|++.+++.+....+|..+++.+.+.+.+.. +|++.+++.+++.++..+..++ .||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999998776 8999999888877766554443 444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.62  E-value=2e-14  Score=137.70  Aligned_cols=141  Identities=16%  Similarity=0.135  Sum_probs=119.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhHHh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMH  166 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~  166 (355)
                      +|++..+.+++.+.+........+++|+++|| +|||+.++++.++..++.+++++++ +.+.++++|++.|++.|...+
T Consensus        52 lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~  131 (500)
T PRK09584         52 LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKA  131 (500)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccC
Confidence            79999998888888776666667889999999 5999999999999999988888864 456677889999999998888


Q ss_pred             HHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHH
Q 018453          167 AAPMYIAETAPTPM--RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       167 ~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~  230 (355)
                      ....++.|++|+++  |..++++++.+.++|.++||.+++++.+.. |||+.|++.++..+++++.
T Consensus       132 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-g~~~~F~i~~i~~~i~~i~  196 (500)
T PRK09584        132 NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-GWSVAFALSVVGMLITVVN  196 (500)
T ss_pred             CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHH
Confidence            88899999998654  456788899999999999999999999887 8999999887655554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.61  E-value=7.5e-14  Score=131.16  Aligned_cols=143  Identities=22%  Similarity=0.180  Sum_probs=99.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH---hhh-----hHHHHHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA---LAP-----DFIIMVVGRFVFGIG  160 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~---~~~-----~~~~~~~~r~l~G~~  160 (355)
                      +|++..+.|++.+++.++..+++++.|+++||+|||+.++++..+.++......   ..+     .....++++++.|.+
T Consensus        41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (420)
T PRK09528         41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG  120 (420)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            799999999999999999999999999999999999998876665554432211   111     111122233334433


Q ss_pred             HhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcc
Q 018453          161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLP  235 (355)
Q Consensus       161 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  235 (355)
                      .....+....+..+.  .++++..++.......+|..++|++++.+.+.  +|++.|++.++++++.+++.++++
T Consensus       121 ~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        121 FLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NPQINFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             hccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--CchHhHHHHHHHHHHHHHHHhccc
Confidence            333333333443322  24567788888999999999999999988763  799999988888777665555543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.61  E-value=3.5e-14  Score=140.01  Aligned_cols=141  Identities=18%  Similarity=0.096  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhh
Q 018453           96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAET  175 (355)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~  175 (355)
                      ..+...+..++.+++.++.|+++||+|||++++++.++.++++++.++.++...+++++++.|++.++..+....+++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556677899999999999999999999999999999999999988888888888888999998888899999999999


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcccch
Q 018453          176 APTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP  238 (355)
Q Consensus       176 ~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp  238 (355)
                      +|++.|++++|+......+|.+++|++++.+...  +...+|++.+++.+++.++.+++||+.
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999999999988764  456788888877777777677788864

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.60  E-value=2.1e-13  Score=126.96  Aligned_cols=146  Identities=13%  Similarity=0.108  Sum_probs=123.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|++..+.+++.+...++.+++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++.+++.|...+..
T Consensus       247 ~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~  326 (393)
T PRK15011        247 LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIG  326 (393)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            68899999998888888888999999999999999998887766666555555556777778888998888888777777


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhccc
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  236 (355)
                      ..+..|.+|+ +|++++++++....+|..+++.+++.+.+.. +|+..|++.++++++.++..++.||
T Consensus       327 ~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        327 MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIW-NYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            8888999985 5999999999999999999999999999877 8999999888888887777776664

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.59  E-value=1.1e-13  Score=130.55  Aligned_cols=144  Identities=16%  Similarity=0.088  Sum_probs=118.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhHHh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMH  166 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~  166 (355)
                      +|++..+.+.+.+.+.....++.+++|+++||+ |||+.++++.++..++.++.+... +...+.++..+.++|.|...+
T Consensus        40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~  119 (493)
T PRK15462         40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS  119 (493)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence            689999999999999999999999999999999 999999999999999887666533 223344445555666677777


Q ss_pred             HHHHHHHhhcCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          167 AAPMYIAETAPTP--MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       167 ~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      ...+++.|.+|++  +|..+.++.+.+.++|+.++|.+.+++.+.. ||++.|.++++..+++++..++
T Consensus       120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-Gw~~~F~iaaigm~l~li~~~~  187 (493)
T PRK15462        120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-SWAMGFGLAAVGMIAGLVIFLC  187 (493)
T ss_pred             cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHH
Confidence            7788999999876  6999999999999999999999999998877 9999999877655554444433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.58  E-value=3.3e-14  Score=133.56  Aligned_cols=147  Identities=14%  Similarity=0.177  Sum_probs=126.7

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHH
Q 018453           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP  169 (355)
Q Consensus        90 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  169 (355)
                      +.+..+.|++.++..++..++.++.|++.||+|+|+.+..+.++.+++.++.++.++.+.+++.+++.|++.+...+...
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  337 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF  337 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677889999999999999999999999999999999999999999888888888988888999999999888888888


Q ss_pred             HHHHhhcCCCchhHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHH-hhcccc
Q 018453          170 MYIAETAPTPMRGQLISL-KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM-WWLPAS  237 (355)
Q Consensus       170 ~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~es  237 (355)
                      .++.|.+|++.|++..+. ++....+|.++++.+.+++.+.. ||+..|.+.+++.++..++. ++.++.
T Consensus       338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-GFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            899999999999887665 67788999999999999999987 89999998887776654443 344443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.58  E-value=7.3e-14  Score=130.55  Aligned_cols=146  Identities=24%  Similarity=0.237  Sum_probs=124.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      .|.+..+.+++.+...++.+++.++.|+++||+|||+.+.++.+...++.++..+.++.+.+.+..++.|++.++..+..
T Consensus       250 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  329 (406)
T PRK11551        250 QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVL  329 (406)
T ss_pred             CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHH
Confidence            68889999999999999999999999999999999999888777777777666667777777778888999888888888


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhc
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  234 (355)
                      ..++.|.+|+++|++.+++.+....+|.+++|.+.+.+.+..++|...+++.+...+++.+..+++
T Consensus       330 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        330 YALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998876567777777666666655554444

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.56  E-value=8.9e-14  Score=128.04  Aligned_cols=139  Identities=14%  Similarity=0.084  Sum_probs=121.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhhHHh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF--IIMVVGRFVFGIGIGLAMH  166 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~r~l~G~~~g~~~~  166 (355)
                      ++.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++..++.++..+.++.  ..++...++.|++.+...+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  314 (377)
T TIGR00890       235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTIS  314 (377)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchh
Confidence            68888889999999999999999999999999999999999888888888777666532  3344567888888888888


Q ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHH
Q 018453          167 AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMG  228 (355)
Q Consensus       167 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~  228 (355)
                      ..+.++.|.+|+++|++..++.+....+|..++|.+.+.+.+.. ||++.|++.+++++++.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-GFEYTFIVTGAFALTSL  375 (377)
T ss_pred             ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHhc
Confidence            88889999999999999999999999999999999999998887 89999998887766643

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.56  E-value=4.1e-13  Score=125.26  Aligned_cols=141  Identities=21%  Similarity=0.239  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHh
Q 018453           95 EIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAE  174 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e  174 (355)
                      ..++..+.+.++.+++.++.|++.||+|+|+.+..+.++.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  329 (399)
T PRK05122        250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK  329 (399)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34566778888999999999999999999999998888888888887777888888888999999999888888888889


Q ss_pred             hcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhccc
Q 018453          175 TAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (355)
Q Consensus       175 ~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  236 (355)
                      ..|+++||++.++++....+|..+++.+.+.+.+.. ||++.|++.+++++++++..+++++
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-GYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999998877 8999999988887777666555544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.55  E-value=2.9e-13  Score=123.25  Aligned_cols=160  Identities=29%  Similarity=0.376  Sum_probs=141.1

Q ss_pred             hcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHhhhh
Q 018453           68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRR-ELILAALLYLVGALVTALAPD  146 (355)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~l~~~~~~~~~~~~~  146 (355)
                      ........+.+..+      .+|.+..+.+++.+...++..++.++.+++.||+|||+ .+..+..+..++.++....++
T Consensus       191 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  264 (352)
T cd06174         191 YYGLLTYLPLYLQE------VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS  264 (352)
T ss_pred             HHHHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            33344445555443      14889999999999999999999999999999999999 999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHH
Q 018453          147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (355)
Q Consensus       147 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~  226 (355)
                      .+.+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+.. +|+..+++.+++.++
T Consensus       265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-~~~~~~~~~~~~~~i  343 (352)
T cd06174         265 LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGGVFLILAALALL  343 (352)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcchHHHHHHHHHHH
Confidence            8889999999999999999999999999999999999999999999999999999999999876 999999999998888


Q ss_pred             HHHHHhhc
Q 018453          227 MGMGMWWL  234 (355)
Q Consensus       227 ~~~~~~~~  234 (355)
                      ..+..+++
T Consensus       344 ~~i~~~~~  351 (352)
T cd06174         344 AALLLLLL  351 (352)
T ss_pred             HHHHheec
Confidence            77665443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00889 2A0110 nucleoside transporter

Probab=99.54  E-value=2.8e-13  Score=127.02  Aligned_cols=147  Identities=13%  Similarity=0.227  Sum_probs=123.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhhHHh
Q 018453           91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP----DFIIMVVGRFVFGIGIGLAMH  166 (355)
Q Consensus        91 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~  166 (355)
                      ++....+.+.++..++.+++.++.|+++||+|+|+.++++.++.+++..+.....    +.+.+++.+++.|++.+...+
T Consensus       248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~  327 (418)
T TIGR00889       248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI  327 (418)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            3457789999999999999999999999999999999999999888876666532    245677789999999998888


Q ss_pred             HHHHHHHhhcCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhhcccc-----chhHHHHhHHHHHHHHHH-HHhhcccc
Q 018453          167 AAPMYIAETAPTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLVA-----GWRYMYGASTPLAVIMGM-GMWWLPAS  237 (355)
Q Consensus       167 ~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~l~~~~~-----~w~~~~~~~~~~~~~~~~-~~~~~~es  237 (355)
                      ....++.|.+|+++|+++.++.+ ...++|.++||.+++.+.+..+     ||+..|.+.+++.+++.+ ..++++|+
T Consensus       328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            88999999999999999999997 6789999999999999987642     699999988888776554 44556665

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.54  E-value=5e-13  Score=125.61  Aligned_cols=150  Identities=20%  Similarity=0.273  Sum_probs=116.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHH-HHHHHHHHHHHHhhhhHH---------------
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD----ILGRRRELILA-ALLYLVGALVTALAPDFI---------------  148 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~l~~~~~~~~~~~~~~~---------------  148 (355)
                      +|.+....+++..+..+..++.+++.|+++|    |+|||+.++++ .+..+++.++.+++++..               
T Consensus        34 lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~  113 (477)
T TIGR01301        34 LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRA  113 (477)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHH
Confidence            7999999999999999999999999999999    59999998874 566666666776665532               


Q ss_pred             --HHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCch--hHHHHHHHHHHHHHHHHHHHHHHHh--hcc------------c
Q 018453          149 --IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMR--GQLISLKEFFIVLGMVGGYGIGSLL--VDL------------V  210 (355)
Q Consensus       149 --~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r--~~~~~~~~~~~~~g~~~~~~i~~~l--~~~------------~  210 (355)
                        ..+++-.+..++.....+...+++.|.+|+++|  +.+.++.+...++|.++|+.+++..  .+.            .
T Consensus       114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~  193 (477)
T TIGR01301       114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC  193 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc
Confidence              222333344557777788889999999998865  5799999999999999999998864  111            0


Q ss_pred             cchhHHHHhHHHHHHHHHHHH-hhcccch
Q 018453          211 AGWRYMYGASTPLAVIMGMGM-WWLPASP  238 (355)
Q Consensus       211 ~~w~~~~~~~~~~~~~~~~~~-~~~~esp  238 (355)
                      .+.+..|++.+++.++..+.. +..+|.|
T Consensus       194 ~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       194 ANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             chHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            167889999888877765544 5578865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.54  E-value=1.4e-12  Score=120.38  Aligned_cols=146  Identities=16%  Similarity=0.162  Sum_probs=124.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|.++.+.+++.+...+...++.++.|++.||+|||+.+.++.++..+..+...+.++.+.+++.+++.|++.|...+..
T Consensus       230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  309 (375)
T TIGR00899       230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIG  309 (375)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68888899998888777888889999999999999999888877766666666666778888888999999998888888


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhccc
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  236 (355)
                      ..++.|..|+ ++++++++++....+|..++|.+.+.+.+.. ||+..|++.+++++++.+..++++|
T Consensus       310 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       310 MLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW-SYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHheecC
Confidence            8899999875 5679999999999999999999999998887 8999999988888877776665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.51  E-value=8.9e-13  Score=125.61  Aligned_cols=156  Identities=19%  Similarity=0.066  Sum_probs=117.9

Q ss_pred             cccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH--HHhhhhHH
Q 018453           71 TSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV--TALAPDFI  148 (355)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~--~~~~~~~~  148 (355)
                      ....+|.+..+      .+|++..+.++..+...++.+++.++.|+++||+|||+.+.....+..++..+  ....++.+
T Consensus       277 ~~~~~p~yl~~------~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (467)
T PRK09556        277 IDNWSPVYAFQ------ELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEY  350 (467)
T ss_pred             HHHHHHHHHHH------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHH
Confidence            44556655532      17999999999999999999999999999999999998776654444333222  22334566


Q ss_pred             HHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHH-HHHHHHHHHHHhhc------------cccchhH
Q 018453          149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVD------------LVAGWRY  215 (355)
Q Consensus       149 ~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~------------~~~~w~~  215 (355)
                      .+.+.+++.|++..+..........|.+|++.||++.|+.+....+ |..++|.+.|.+.+            .. +|+.
T Consensus       351 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~-~~~~  429 (467)
T PRK09556        351 MYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLT-GWAG  429 (467)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccccccc-ChHH
Confidence            6667888888655444444456777999999999999999988886 77999999999998            44 7999


Q ss_pred             HHHhHHHHHHHHHHHHhh
Q 018453          216 MYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~  233 (355)
                      .|++.+++++++.+..++
T Consensus       430 ~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        430 TFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999887777776655544

>PRK12382 putative transporter; Provisional

Probab=99.51  E-value=1.3e-12  Score=121.66  Aligned_cols=137  Identities=19%  Similarity=0.191  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhh
Q 018453           96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAET  175 (355)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~  175 (355)
                      .++..+.+.++.++++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|++.+...+.....+.|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  330 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR  330 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            45666778888899999999999999999999999888888888877778888888899999999998888888889999


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          176 APTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       176 ~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      +|+++||+..++.+....+|..++|.+.+.+.+.. ||+..|.+.+++.++..+..++
T Consensus       331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-GYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999887 8999999988887776655443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.50  E-value=2.4e-12  Score=119.45  Aligned_cols=140  Identities=13%  Similarity=0.063  Sum_probs=126.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|.+..+.|.+.+...++.+++.++.+++.||+|+|+.+.++.++..+..++.++.++.+.+++.+++.|++.|...+..
T Consensus       235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~  314 (382)
T TIGR00902       235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAA  314 (382)
T ss_pred             CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHH
Q 018453          169 PMYIAETAPTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM  231 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  231 (355)
                      ..++.+. |+++|+++.++++ ...++|.++++.++|.+.+.. |+ ..|++.++++++++++.
T Consensus       315 ~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       315 MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-GA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHHHH
Confidence            9999988 9999999999986 578899999999999999987 76 66777777766655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.50  E-value=9.3e-13  Score=124.97  Aligned_cols=142  Identities=18%  Similarity=0.181  Sum_probs=118.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL--GRRRELIL--AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLA  164 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~  164 (355)
                      +|++..+.+++.++..++.++++++.|+++||.  ++|+...+  +.++.+++.++....++++.+++.+++.|++.+..
T Consensus       271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~  350 (455)
T TIGR00892       271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSV  350 (455)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchH
Confidence            688999999999999999999999999999973  34433333  33444455555666788888889999999999999


Q ss_pred             HhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHH
Q 018453          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       165 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~  230 (355)
                      .+....++.|.+|++++++.+++++....+|.++||.+++.+.+..++|+..|++.+++.+++.+.
T Consensus       351 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       351 GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999887757999999988876665543

>PRK03699 putative transporter; Provisional

Probab=99.49  E-value=2.2e-12  Score=120.25  Aligned_cols=158  Identities=13%  Similarity=0.024  Sum_probs=128.9

Q ss_pred             ccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 018453           72 SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMV  151 (355)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~  151 (355)
                      ....|.+.++      .+|++..+.+++.+.+.++..++.++.|+++||+++|+.+.....+..+..++....++.+.+.
T Consensus       225 ~~~~p~~l~~------~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  298 (394)
T PRK03699        225 ISWVPEYAQK------KFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLL  298 (394)
T ss_pred             HHHHHHHHHH------HcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            4456666542      1689999999999999999999999999999999999998887777777666666667776677


Q ss_pred             HHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHH
Q 018453          152 VGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM  231 (355)
Q Consensus       152 ~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  231 (355)
                      +..++.|++.+..++....+..|..| +.++...+....+..+|..++|.+.+.+.+.. ||+..+++.+++.+++.+..
T Consensus       299 ~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~  376 (394)
T PRK03699        299 YAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF-GLQAALLTANGLYAVVFVMC  376 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-CchhhhhhhHHHHHHHHHHH
Confidence            77888999888888888888888776 44678888888899999999999999999887 89999998888877776655


Q ss_pred             hhcccc
Q 018453          232 WWLPAS  237 (355)
Q Consensus       232 ~~~~es  237 (355)
                      .++++.
T Consensus       377 ~~~~~~  382 (394)
T PRK03699        377 ILLGFV  382 (394)
T ss_pred             HHHHHH
Confidence            555443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.48  E-value=8.6e-12  Score=119.16  Aligned_cols=177  Identities=21%  Similarity=0.231  Sum_probs=141.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018453           43 ENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG  122 (355)
Q Consensus        43 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G  122 (355)
                      .....+..|..-++..++..++.........      +        ..-|+...+++.++..+..++.++++|.+.||+.
T Consensus         8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~------~--------lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~d   73 (524)
T PF05977_consen    8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVT------Q--------LTGSPLMVALVQAASTLPILLLSLFAGALADRFD   73 (524)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            3445666777777777777666655433221      1        3447889999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH
Q 018453          123 RRRELILAALLYLVGALVTALA-----PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV  197 (355)
Q Consensus       123 rr~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~  197 (355)
                      ||++++.+.++..+..++.++.     .+.+.+++.-++.|++.+...|...+.+.|..|+++...++++.++..++..+
T Consensus        74 rrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~  153 (524)
T PF05977_consen   74 RRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARI  153 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHh
Confidence            9999999888776555444332     36788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhc
Q 018453          198 GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (355)
Q Consensus       198 ~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  234 (355)
                      +||.++|.++... |-.+.|++.++..++..+....+
T Consensus       154 iGPalgG~Lva~~-G~~~~f~inalsfl~~i~~l~~~  189 (524)
T PF05977_consen  154 IGPALGGILVAFF-GAAAAFLINALSFLISILALLRW  189 (524)
T ss_pred             ccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999998876 78888888776655544443333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.48  E-value=8.8e-12  Score=115.96  Aligned_cols=174  Identities=15%  Similarity=0.010  Sum_probs=127.4

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHH--HHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLI--TSGSLYGALIGSILA-FNIADILGRRRELILAA  131 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~~~~-g~l~dr~Grr~~~~~~~  131 (355)
                      +.+...++..|+..+...+.+|.+.++       .|.+.++.|++  .+...+.-.+.+++. ++..||+|||+..++..
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~-------~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~   76 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLLRE-------DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM   76 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence            344455677888888888999999886       79999999997  356677777778777 45789999998875555


Q ss_pred             HHH-HHHHHHHH-h--hhh-HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018453          132 LLY-LVGALVTA-L--APD-FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL  206 (355)
Q Consensus       132 ~l~-~~~~~~~~-~--~~~-~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  206 (355)
                      .+. .+.....+ +  ..+ ...++...++.++..+...+....+..|..++++++...+....+..+|.++|+.+.+.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l  156 (390)
T TIGR02718        77 QCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVL  156 (390)
T ss_pred             HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332 21222222 1  222 333344455566677777777788888999888889888889998999999999988888


Q ss_pred             hccccchhHHHHhHHHHHHHHHHHHhhccc
Q 018453          207 VDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (355)
Q Consensus       207 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  236 (355)
                      .+.. |||..|++.+++.++..+..++++|
T Consensus       157 ~~~~-gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       157 FGKF-GQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             HHHh-CHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8887 9999999998887776555555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.48  E-value=3e-12  Score=120.10  Aligned_cols=142  Identities=15%  Similarity=0.045  Sum_probs=103.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGR-RRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      +|++..+.|++.+++.++.++++++.|.++||+|| |+.+.++.++..+...+..+.++++.+++.|++.|++.+...+.
T Consensus        33 ~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  112 (418)
T TIGR00889        33 LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIAL  112 (418)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHH
Confidence            79999999999999999999999999999999965 77888888888888888888888999999999999987666555


Q ss_pred             HHHHHH--------hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcccch
Q 018453          168 APMYIA--------ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP  238 (355)
Q Consensus       168 ~~~~~~--------e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp  238 (355)
                      ......        |......|.+..|      .+|.++++.+++.+... ..|+ .|++.+++.++..+..+++||+|
T Consensus       113 ~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~-~~~~-~f~~~~~~~~~~~~~~~~~~e~~  183 (418)
T TIGR00889       113 TNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE-LSNI-QLYITAGSSALLGVFALTLPDIP  183 (418)
T ss_pred             HHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc-chhH-HHHHHHHHHHHHHHHHhcCCCCC
Confidence            544322        2222223444444      36788888888877322 1354 45555555555555556678765

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.46  E-value=1.5e-12  Score=121.19  Aligned_cols=131  Identities=21%  Similarity=0.206  Sum_probs=109.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL-VTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      +|++..+.+++.+...++.+++.++.|++.||+|||+.+.++.++..+..+ +....++.+.+.+..++.|++.+...+.
T Consensus       269 ~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (405)
T TIGR00891       269 LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGI  348 (405)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhh
Confidence            688999999999999999999999999999999999998887776533333 3333456666667777888877777788


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHh
Q 018453          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGA  219 (355)
Q Consensus       168 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~  219 (355)
                      .+.++.|.+|+++|++++|+.+....+|..++|++.+.+.+..+.|+..+..
T Consensus       349 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       349 LPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            8899999999999999999999999999999999999999987348776654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.46  E-value=2.8e-12  Score=119.80  Aligned_cols=138  Identities=18%  Similarity=0.272  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHh
Q 018453           95 EIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAE  174 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e  174 (355)
                      ..+.+.++..++.+++.+..|++.||+|||+.+..+.++..++.+...+.++.+.+.+.+++.|++.+...+.....+.+
T Consensus       259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  338 (408)
T PRK09874        259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY  338 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence            35667777888889999999999999999999999888888877777777788888889999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          175 TAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       175 ~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      ..|+++||+.+++.+....+|..+||.+++.+.+.. ||+..|++.+++.++..+..++
T Consensus       339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-GFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887 8999999998887776655443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.46  E-value=2e-12  Score=119.59  Aligned_cols=143  Identities=21%  Similarity=0.138  Sum_probs=105.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRR--ELIL------AALLYLVGALVTALAPDFIIMVVGRFVFGIG  160 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~--~~~~------~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~  160 (355)
                      +|.+..+.+++.+...++..++.++.|++.||+|||+  ....      +.++..+..+.....++.+..+...++.+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (399)
T TIGR00893       246 RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFG  325 (399)
T ss_pred             hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence            6888999999999999999999999999999999996  1111      1111111111111122334444444444444


Q ss_pred             HhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHh
Q 018453          161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW  232 (355)
Q Consensus       161 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  232 (355)
                      .+ ..+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..++|+..|++.++++++..+..+
T Consensus       326 ~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       326 LG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             hh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            44 788889999999999999999999999999999999999999998873399999988888777655443

>PRK09952 shikimate transporter; Provisional

Probab=99.46  E-value=6.2e-12  Score=118.80  Aligned_cols=149  Identities=17%  Similarity=0.038  Sum_probs=113.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh---h-hhHHHHHHHHHHHHHHHhhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL---A-PDFIIMVVGRFVFGIGIGLA  164 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~---~-~~~~~~~~~r~l~G~~~g~~  164 (355)
                      +|.+......+.....+..+++.++.|+++||+|||+.++.+.++..++.+....   . ++.+.+++..++.|++.+..
T Consensus       281 ~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  360 (438)
T PRK09952        281 LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMV  360 (438)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence            5777776666666667777888999999999999999988887766555433322   1 23444455667778888888


Q ss_pred             HhHHHHHHHhhcCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhhccc-cchhHHHHhHHHHHHHHHHHHhhcccc
Q 018453          165 MHAAPMYIAETAPTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLV-AGWRYMYGASTPLAVIMGMGMWWLPAS  237 (355)
Q Consensus       165 ~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~l~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~es  237 (355)
                      .+....++.|.+|++.|+.+.++.+ .+..+|+.++|.+.+.+.+.. ++|+..+.+.++++++..+..+.++|+
T Consensus       361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence            8888999999999999999999854 455689999999999998743 358888888888777777666666664

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.45  E-value=7e-12  Score=116.27  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=116.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      .|.+..+.+++.+...++.++++++.|++.||+|+|+.+..+..+.+++.+...  . ........++.|++.+...+..
T Consensus       230 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~  306 (381)
T PRK03633        230 QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVA  306 (381)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHH
Confidence            588888999999999999999999999999999999998888877777665443  2 2333456778888877788888


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      ..++.|..|+++++...+.......+|.++||.+++.+.+.. +|++.|.+.+.+.++..+..+.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        307 MAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-SDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHh
Confidence            899999999888888888888899999999999999999887 8999999888777665544433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.43  E-value=9.2e-13  Score=124.33  Aligned_cols=149  Identities=17%  Similarity=0.127  Sum_probs=116.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----hccHH-HHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRRR-ELILAALLYLVGALVTALAPD------FIIMVVGRFVF  157 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~l~~~~~~~~~~~~~------~~~~~~~r~l~  157 (355)
                      +|+++.+.|++.++..+..++..++.|.++||    +|||| .++.+..+.+++.+++.+.++      ...+++.+++.
T Consensus        30 ~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (437)
T TIGR00792        30 LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILL  109 (437)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence            79999999999999999999999999999998    67754 566777788877777766543      35566777888


Q ss_pred             HHHHhhHHhHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc------cccchhHHHHhHHHHHHHHHHH
Q 018453          158 GIGIGLAMHAAPMYIAETA-PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD------LVAGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       158 G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~------~~~~w~~~~~~~~~~~~~~~~~  230 (355)
                      +++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+..      ...+|++.+++.++++++..+.
T Consensus       110 ~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~  189 (437)
T TIGR00792       110 GLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLII  189 (437)
T ss_pred             HHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHH
Confidence            8888877777778888887 56889999999999888988877776655542      1238999999888887766544


Q ss_pred             -Hhhcccc
Q 018453          231 -MWWLPAS  237 (355)
Q Consensus       231 -~~~~~es  237 (355)
                       .++.+|+
T Consensus       190 ~~~~~~e~  197 (437)
T TIGR00792       190 CFFGTKER  197 (437)
T ss_pred             HHcCCEec
Confidence             3445654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.42  E-value=1.3e-11  Score=117.15  Aligned_cols=156  Identities=16%  Similarity=0.094  Sum_probs=108.4

Q ss_pred             ccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHH-HHHHHHHHHHHHHHh--hhh
Q 018453           72 SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL--GRRRELI-LAALLYLVGALVTAL--APD  146 (355)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~-~~~~l~~~~~~~~~~--~~~  146 (355)
                      ...+|.+.++      ..|++..+.+++...+.++.+++.++.|+++||+  |||.... ....+..++.++..+  ..+
T Consensus       273 ~~~~P~~l~~------~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~  346 (452)
T PRK11273        273 LDWSPTYLKE------VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGN  346 (452)
T ss_pred             HHHHHHHHHH------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccC
Confidence            4456666552      1578888899999999999999999999999999  5554322 222333333332222  234


Q ss_pred             HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH-HHHHHHHHhhccccchhHHHHhHHHHHH
Q 018453          147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV-GGYGIGSLLVDLVAGWRYMYGASTPLAV  225 (355)
Q Consensus       147 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~-~~~~i~~~l~~~~~~w~~~~~~~~~~~~  225 (355)
                      .+...++.++.|.+..........+..|.+|++.||+++|+.+....+|+. ++|.+.+.+.+.. ||+..|++.++.++
T Consensus       347 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~-g~~~~f~~~~~~~~  425 (452)
T PRK11273        347 PTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSI  425 (452)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh-cchHHHHHHHHHHH
Confidence            444444555555544333334455678999999999999999888888765 4799999999887 89999998888777


Q ss_pred             HHHHHHhhc
Q 018453          226 IMGMGMWWL  234 (355)
Q Consensus       226 ~~~~~~~~~  234 (355)
                      ++++...++
T Consensus       426 ~~~~~~~~~  434 (452)
T PRK11273        426 LAVILLIVV  434 (452)
T ss_pred             HHHHHHHHH
Confidence            766555443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.42  E-value=1.4e-11  Score=114.81  Aligned_cols=149  Identities=18%  Similarity=0.184  Sum_probs=118.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      +|.+..+.+.+.+.+.++.+++.++.|++.||+|||+.+..+..+..++.++....+ +...+  .-++.|++.+...+.
T Consensus       235 ~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~  312 (393)
T PRK09705        235 IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPL  312 (393)
T ss_pred             cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHH
Confidence            688999999999999999999999999999999999998888877777766554323 22222  234668887777777


Q ss_pred             HHHHHHhhcC-CCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHH-Hhhcccchh
Q 018453          168 APMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG-MWWLPASPR  239 (355)
Q Consensus       168 ~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~esp~  239 (355)
                      ......+..+ +++|++..++.+....++..++|.+.+++.+..++|...|++..+.+++..+. ..+.||++.
T Consensus       313 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        313 CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            7766677774 57899999999999999999999999999998767888888877776665444 455677654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.42  E-value=3.5e-12  Score=118.10  Aligned_cols=137  Identities=23%  Similarity=0.158  Sum_probs=110.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH--HHHHh--hhhHHHHHHHHHHHHHHHhhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGA--LVTAL--APDFIIMVVGRFVFGIGIGLA  164 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~--~~~~~--~~~~~~~~~~r~l~G~~~g~~  164 (355)
                      +|.+..+.+.+.+...++..++.++.|+++||+|||+.+.....+..+..  ++..+  .++.+.+++..++.|++.+..
T Consensus       250 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  329 (394)
T TIGR00883       250 LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMY  329 (394)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence            68888999999999999999999999999999999998775554443333  12222  245667777888899998889


Q ss_pred             HhHHHHHHHhhcCCCchhHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHH
Q 018453          165 MHAAPMYIAETAPTPMRGQLISL-KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV  225 (355)
Q Consensus       165 ~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~  225 (355)
                      .+....++.|.+|+++|+++.++ .+....+|..++|.+++.+.+..++|+..++..++.++
T Consensus       330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       330 TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            99999999999999999999998 46667789999999999999887448887776655544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.42  E-value=1.4e-11  Score=114.53  Aligned_cols=142  Identities=20%  Similarity=0.089  Sum_probs=116.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGA-LVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      +|.+..+.+++.+...++.+++.++.|+++||+|||..+. +..+..++. ++....++.+.+.++.++.|++.+...+.
T Consensus       236 ~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~  314 (390)
T PRK03545        236 AGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLA  314 (390)
T ss_pred             cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHH
Confidence            5888889999999999999999999999999999887544 444444443 33345567778888889999988777777


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       168 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      ....+.+..| ++|+++++++.....+|..+||++++.+.+.. |++..|++.+++.+++++....
T Consensus       315 ~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~-g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        315 MQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL-GLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHHHHHHH
Confidence            7788888876 68899999999999999999999999999987 9999999988888776665444

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.42  E-value=4.8e-12  Score=120.27  Aligned_cols=148  Identities=15%  Similarity=0.029  Sum_probs=114.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh-----h------hHHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-----P------DFIIMVVGRFVF  157 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-----~------~~~~~~~~r~l~  157 (355)
                      +|++..+.++......++.+++.++.|+++||+|||+.+.++.++.+++.++..+.     +      +...+....++.
T Consensus       314 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (481)
T TIGR00879       314 AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFI  393 (481)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHH
Confidence            68888888899999999999999999999999999999998888887777766521     1      222222223332


Q ss_pred             HHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHh-hccc
Q 018453          158 GIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW-WLPA  236 (355)
Q Consensus       158 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~e  236 (355)
                      +....+..+....++.|.+|+++|++++++......+|.++++.+.+.+.+.. +|++.|++.++++++..+..+ +.||
T Consensus       394 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~i~~~~~~~~  472 (481)
T TIGR00879       394 AFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI-GVGGVFIFFGGLNVLGLIFVYFFLPE  472 (481)
T ss_pred             HHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccceehhHHHHHHHHHHHHheeccc
Confidence            22222334566677799999999999999999999999999999999998876 899999988888777665544 4565


Q ss_pred             c
Q 018453          237 S  237 (355)
Q Consensus       237 s  237 (355)
                      +
T Consensus       473 ~  473 (481)
T TIGR00879       473 T  473 (481)
T ss_pred             C
Confidence            4

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.41  E-value=2.1e-11  Score=113.03  Aligned_cols=190  Identities=19%  Similarity=0.198  Sum_probs=140.2

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018453           40 PSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD  119 (355)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d  119 (355)
                      .++.+.+|+..++..+..++..+..........   |...+      =|.+.+.+..|++.++..+|.+++++..|+++.
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~w---pYl~~------lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~   96 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMW---PYLQK------LDPTATATFFGLVIAASSLGHAIFSLIFGIWSN   96 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecc---hhhhh------cCCCCCcchhhHHHHHHHHHHHhcchhhccccc
Confidence            344556777777775555554444333332222   22222      114678889999999999999999999999999


Q ss_pred             Hhcc-HHHHHHHHHHHHHHHHHHH-hh---h-hHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHH
Q 018453          120 ILGR-RRELILAALLYLVGALVTA-LA---P-DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIV  193 (355)
Q Consensus       120 r~Gr-r~~~~~~~~l~~~~~~~~~-~~---~-~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~  193 (355)
                      |.+. |+.++++.++..++.++.. +.   + ..+.++++|++.|+|.| .....-.|+++-...++|.++++....+..
T Consensus        97 k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~v  175 (488)
T KOG2325|consen   97 KTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFV  175 (488)
T ss_pred             ccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHH
Confidence            9986 8888999999999999983 32   3 57889999999999977 567778899998888999999999999999


Q ss_pred             HHHHHHHHHHHHhhccc------------cchhHHHHhHHHHHHHHHHH-Hhhcccchh
Q 018453          194 LGMVGGYGIGSLLVDLV------------AGWRYMYGASTPLAVIMGMG-MWWLPASPR  239 (355)
Q Consensus       194 ~g~~~~~~i~~~l~~~~------------~~w~~~~~~~~~~~~~~~~~-~~~~~esp~  239 (355)
                      +|..+||.+...+....            .-+...-|+.+++.++.++. .++++|.++
T Consensus       176 lg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  176 LGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            99999999887765311            12345667777777775544 445677643

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.41  E-value=3.5e-12  Score=122.41  Aligned_cols=137  Identities=13%  Similarity=0.049  Sum_probs=109.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhHHh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA--PDFIIMVVGRFVFGIGIGLAMH  166 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~  166 (355)
                      +|++..+.+++.+...++.+++.++.|+++||+|||+.++++.++..+..++....  .+.+.+.+..++.++...+..+
T Consensus       306 ~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (496)
T PRK03893        306 LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISG  385 (496)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccch
Confidence            78999999999999999999999999999999999999888877766665544332  2334444445554444444556


Q ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHH
Q 018453          167 AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (355)
Q Consensus       167 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~  226 (355)
                      ..+.++.|.+|+++|++.+++.+....+|..+||.+++.+.+.. ||+..+.+.+..+.+
T Consensus       386 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~-g~~~~~~~~~~~~~~  444 (496)
T PRK03893        386 LLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL-DLGTALASLSFSLTF  444 (496)
T ss_pred             hhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHH
Confidence            77788999999999999999999999999999999999999887 898887665544433

>TIGR00897 2A0118 polyol permease family

Probab=99.41  E-value=2.3e-11  Score=113.71  Aligned_cols=152  Identities=13%  Similarity=0.084  Sum_probs=116.4

Q ss_pred             cccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHh-----hhh
Q 018453           73 CATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI-LAALLYLVGALVTAL-----APD  146 (355)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~l~~~~~~~~~~-----~~~  146 (355)
                      ...|.+.++       +|++..+.+++.+...++..++.++.|+++||+|||+.+. .+.+...+..+....     .++
T Consensus       243 ~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~  315 (402)
T TIGR00897       243 VFLPMFVAE-------LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHS  315 (402)
T ss_pred             HHHHHHHHH-------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            345555554       6888889999999999999999999999999999988764 333333333322221     235


Q ss_pred             HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHH
Q 018453          147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (355)
Q Consensus       147 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~  226 (355)
                      .+.+++..++.|++.+...+. ...+.|..| ++||+++|+.+....+|..++|.+.+.+.+.. ||...+++.+++.++
T Consensus       316 ~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~-g~~~~~~~~a~~~~i  392 (402)
T TIGR00897       316 FAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF-GAIGVVWIFAALYVV  392 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHH
Confidence            666777888889888766543 456677655 68999999999999999999999999999987 899999998888777


Q ss_pred             HHHHHhhc
Q 018453          227 MGMGMWWL  234 (355)
Q Consensus       227 ~~~~~~~~  234 (355)
                      ..+..+|+
T Consensus       393 ~~~~~~~~  400 (402)
T TIGR00897       393 SAFLTAFI  400 (402)
T ss_pred             HHHHHHHh
Confidence            66665554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.40  E-value=2.1e-12  Score=124.39  Aligned_cols=264  Identities=16%  Similarity=0.200  Sum_probs=193.3

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 018453           53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL  132 (355)
Q Consensus        53 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  132 (355)
                      ..++.++..+..++..+.+...+.++.+.       ++++.++.|++.+.+-++..+...+..++..|..|-+.+-++.+
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~IttiErR-------F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~  170 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITTIERR-------FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLV  170 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhh-------cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechh
Confidence            33555666677777778888888888876       89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh-------------------------------------------------h--HH-HHHHHHHHHHHH
Q 018453          133 LYLVGALVTALAP-------------------------------------------------D--FI-IMVVGRFVFGIG  160 (355)
Q Consensus       133 l~~~~~~~~~~~~-------------------------------------------------~--~~-~~~~~r~l~G~~  160 (355)
                      +++++.++.++-+                                                 +  .+ +++++.++.|+|
T Consensus       171 ~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG  250 (735)
T KOG3626|consen  171 LMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG  250 (735)
T ss_pred             HHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC
Confidence            9999999988731                                                 0  22 566889999999


Q ss_pred             HhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc------------------cchhHHHHhHHH
Q 018453          161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV------------------AGWRYMYGASTP  222 (355)
Q Consensus       161 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~------------------~~w~~~~~~~~~  222 (355)
                      ....++...+|+-|...+++-...+|+......+|.++|-++++++...+                  +.|+.-|+++++
T Consensus       251 ~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~  330 (735)
T KOG3626|consen  251 ATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGA  330 (735)
T ss_pred             CCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999877411                  247888888899


Q ss_pred             HHHHHHHHHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCC-chhHHHHHHHhhccccccccchhhhhh
Q 018453          223 LAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDS-APTEVDEILTELSYVGEDKEVSLREVF  301 (355)
Q Consensus       223 ~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (355)
                      +.++..+.++++|...+.-.++                ...++.+....+++ .+...     ...+.-++-....+.++
T Consensus       331 ~~~~~a~p~f~fPk~lp~~~~~----------------~~~~~~~~~k~~~~~~~~~~-----~~~~~ikdfp~s~~~ll  389 (735)
T KOG3626|consen  331 LLLFSAVPLFFFPKELPKSQKR----------------KRARDLHVLKTESGGAKSDK-----TFGKKIKDFPKSIKRLL  389 (735)
T ss_pred             HHHHHHHHHHhCcccCcccccc----------------chhhhhcccccccccccCCc-----chhhhHHHHHHHHHHHh
Confidence            9888888888887654311000                00000000000000 00000     00000012233444455


Q ss_pred             cccchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhccccchhhhh
Q 018453          302 HGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQPLMQHGSQ  348 (355)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (355)
                      ++    +++++..+....+...+.++..|+|.|++.....-++..+.
T Consensus       390 ~N----~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~  432 (735)
T KOG3626|consen  390 SN----PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANI  432 (735)
T ss_pred             cC----chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHH
Confidence            54    67777777788888889999999999999877665555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.39  E-value=2.3e-11  Score=114.22  Aligned_cols=149  Identities=18%  Similarity=0.131  Sum_probs=127.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|.+..+.+++.+...++.+++.++.+++.||.++++.+..+.++..++.++..+.++.+.+.++.++.|++.+...+..
T Consensus       254 ~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  333 (417)
T PRK10489        254 WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQ  333 (417)
T ss_pred             cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            68888999999999999999999999999999888888888888888888877777888878888899999888877888


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHH-HHHHHhhcccch
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI-MGMGMWWLPASP  238 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~esp  238 (355)
                      ..++.|..|++.||++++++.....+|..+|+.+.+.+.+.. |++..+++.+++.++ ..+....+++.+
T Consensus       334 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        334 YTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM-TPVASASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            889999999999999999999999999999999999999887 788888776666554 444445556543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.38  E-value=6.4e-11  Score=109.89  Aligned_cols=138  Identities=15%  Similarity=0.057  Sum_probs=117.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      .|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.++.++.+.+++..++.|++.+...+..
T Consensus       235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  314 (382)
T PRK11128        235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAA  314 (382)
T ss_pred             CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999988888888888899988999999999999888888


Q ss_pred             HHHHHhhcCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHH
Q 018453          169 PMYIAETAPTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM  229 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~  229 (355)
                      ..++.+. +++++++..++.. ....+|..+||.++|.+.+.. |+ ..|+..+++.+++++
T Consensus       315 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~-g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        315 MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL-GA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHH
Confidence            8888886 5666788888875 667788899999999999887 66 466666655554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.37  E-value=3.8e-11  Score=114.72  Aligned_cols=149  Identities=15%  Similarity=0.086  Sum_probs=110.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhh--hH--HHHHHHHHHHHHHHhh-
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DF--IIMVVGRFVFGIGIGL-  163 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~--~~~~~~r~l~G~~~g~-  163 (355)
                      .|.+....++......++.+++.++.+++.||+|||+.++.+.++.+++.++.+...  +.  .....+.++.+.+.+. 
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (479)
T PRK10077        301 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS  380 (479)
T ss_pred             cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence            577777777777788889999999999999999999999999999888887765431  21  1222334444544443 


Q ss_pred             HHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh------ccccchhHHHHhHHHHHHHHHHHH-hhccc
Q 018453          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV------DLVAGWRYMYGASTPLAVIMGMGM-WWLPA  236 (355)
Q Consensus       164 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~------~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e  236 (355)
                      ..+....++.|.+|+++|++++++......+|.++++.+.+.+.      +.. +|++.|++.++++++..++. ++.||
T Consensus       381 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e  459 (479)
T PRK10077        381 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF-HNGFSYWIYGCMGVLAALFMWKFVPE  459 (479)
T ss_pred             ccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc-cCccHHHHHHHHHHHHHHHHHhcccc
Confidence            23667889999999999999999999999999998876665443      344 78888888877766665544 44566


Q ss_pred             ch
Q 018453          237 SP  238 (355)
Q Consensus       237 sp  238 (355)
                      +.
T Consensus       460 ~~  461 (479)
T PRK10077        460 TK  461 (479)
T ss_pred             CC
Confidence            53

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.37  E-value=4.5e-14  Score=135.18  Aligned_cols=259  Identities=18%  Similarity=0.211  Sum_probs=3.0

Q ss_pred             HHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 018453           58 ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVG  137 (355)
Q Consensus        58 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~  137 (355)
                      ++..+..+...+.....+.++.+.       |++++++.|++.+.+-++.++..++..++.+|..|-+.+-.+.++++++
T Consensus         9 ~~~~~~q~~~~g~~~~~lttiErR-------F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g   81 (539)
T PF03137_consen    9 CLLGLFQMMVSGYVNSSLTTIERR-------FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLG   81 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHH
Confidence            333344477777888888888887       9999999999999999999999999999999999989999999999999


Q ss_pred             HHHHHhhh--------------------------------------------------hHHHHHHHHHHHHHHHhhHHhH
Q 018453          138 ALVTALAP--------------------------------------------------DFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus       138 ~~~~~~~~--------------------------------------------------~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      ++++++-+                                                  -+..++++.++.|+|....+++
T Consensus        82 ~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tL  161 (539)
T PF03137_consen   82 SLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTL  161 (539)
T ss_dssp             ----------------------------------------------------------------------SSS-------
T ss_pred             HHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccc
Confidence            98876511                                                  0356778999999999999999


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------------ccchhHHHHhHHHHHHH
Q 018453          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL---------------------VAGWRYMYGASTPLAVI  226 (355)
Q Consensus       168 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~---------------------~~~w~~~~~~~~~~~~~  226 (355)
                      ..+|+-|..++++-+..+|+.+....+|.++|-++++.+...                     .+.|+.-|++.+++.++
T Consensus       162 G~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l  241 (539)
T PF03137_consen  162 GITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFL  241 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999877631                     12477777777777777


Q ss_pred             HHHHHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcccch
Q 018453          227 MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCL  306 (355)
Q Consensus       227 ~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (355)
                      ..+.++++|++-+...+..           ++.+.  ++.+.+...++ +...++..+...+..++-....+.++++   
T Consensus       242 ~aipl~~FPk~lp~~~~~~-----------~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~df~~~l~~Ll~N---  304 (539)
T PF03137_consen  242 SAIPLFFFPKKLPGTSERQ-----------EEKES--SERKEEDSDKD-SFKDPKSKKSFGKSIKDFPKALKRLLTN---  304 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHcCCccCCCccccc-----------chhhh--hhcchhhhhhh-cccccccccchhhhhhhHHHHHHHHhcC---
Confidence            7666666765422110000           00000  00000000000 0000000000000112223344444554   


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhccc
Q 018453          307 KALIIGAGLVLFQQITGQPSVLYYAASILQDFLQP  341 (355)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (355)
                       +.+++..+..........++..|+|.|++.....
T Consensus       305 -p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~  338 (539)
T PF03137_consen  305 -PVFMCLILAGVFESFIVSGFATFLPKYLESQFGL  338 (539)
T ss_dssp             -----------------------------------
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             6677777777777778899999999999975543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.37  E-value=7.3e-11  Score=111.61  Aligned_cols=148  Identities=16%  Similarity=0.149  Sum_probs=133.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR--RELILAALLYLVGALVTAL--------APDFIIMVVGRFVFG  158 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~r~l~G  158 (355)
                      +|++..+...+..+..+..++|++++|++.||+|.|  ++++++.+++.+..+...+        .++.+.+.+.-++.|
T Consensus       312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G  391 (477)
T PF11700_consen  312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG  391 (477)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999  8888888887666555555        577888999999999


Q ss_pred             HHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhccc
Q 018453          159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (355)
Q Consensus       159 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  236 (355)
                      +..|..++..-++.+|+.|+++.+..+|++.+.....+.+||++.+.+.+..++.|+.++...++.++.+++.++++.
T Consensus       392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~  469 (477)
T PF11700_consen  392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV  469 (477)
T ss_pred             HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999999999999999999999988877999999888888888877776654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.37  E-value=2.2e-11  Score=113.50  Aligned_cols=140  Identities=13%  Similarity=0.159  Sum_probs=120.9

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHH
Q 018453           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP  169 (355)
Q Consensus        90 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  169 (355)
                      +.+....|.+.++..+...++.+..|++.||+|+|+.+.++.++.++...+....++.+.+++.+++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667788999999999999999999999999999999999998888888777788888888899999999887777777


Q ss_pred             HHHHhhcCCCchhHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHH
Q 018453          170 MYIAETAPTPMRGQLISL-KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       170 ~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~  230 (355)
                      .+..+..+++.+++..+. .+....+|..+++.+++++.+.. ||+..|.+.+++.++..++
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-GFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-ccHHHHHHHHHHHHHHHHH
Confidence            788888888888887766 67899999999999999999987 8999999988887765544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.37  E-value=2.8e-11  Score=115.64  Aligned_cols=152  Identities=21%  Similarity=0.280  Sum_probs=135.0

Q ss_pred             cccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 018453           73 CATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVV  152 (355)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~  152 (355)
                      ..+|.+.++      .+|.+...+|++.+.+.+|.++|.++.+++.+|+++++.+..+.++.+++.+..++.++.+..++
T Consensus       239 aLlPl~a~~------~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~  312 (524)
T PF05977_consen  239 ALLPLFARD------VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALI  312 (524)
T ss_pred             HhhhHHHHH------HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            346666542      27889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHH
Q 018453          153 GRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM  231 (355)
Q Consensus       153 ~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  231 (355)
                      +.++.|++.....+...+.+.+..|++.||+.++++++....+..+|.++.|.+.+.. |.+..+.+.++..++..++.
T Consensus       313 ~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~-g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  313 ALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF-GVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999887 88888888777655554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.34  E-value=1.3e-10  Score=111.31  Aligned_cols=148  Identities=16%  Similarity=0.168  Sum_probs=117.3

Q ss_pred             ccCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHHHHHHHHhh
Q 018453           89 YDLSSVEIGLITS-GSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT---ALA-PDFIIMVVGRFVFGIGIGL  163 (355)
Q Consensus        89 ~~~s~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~---~~~-~~~~~~~~~r~l~G~~~g~  163 (355)
                      +|++..+.+++.. ...++.+++.+++|+++||+|+|+.+.++.++.++..++.   +.. ++.+.+.+.-++..++.|.
T Consensus       253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~  332 (491)
T PRK11010        253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGM  332 (491)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            6899999999974 5668999999999999999999988776666555444322   222 3455555566666666666


Q ss_pred             HHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcccc
Q 018453          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS  237 (355)
Q Consensus       164 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~es  237 (355)
                      ..+....+..+..+++.+++..++.+....+|..+++.++|.+.+.. ||+..|.+.+++++++++...+++++
T Consensus       333 ~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        333 GTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66777888899999999999999999999999999999999999987 89999999888888877666665543

>TIGR00895 2A0115 benzoate transport

Probab=99.34  E-value=2.5e-11  Score=112.63  Aligned_cols=118  Identities=20%  Similarity=0.112  Sum_probs=99.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|.+..+.+++.+...++.+++.++.|++.||+|||+.+....+......++.....+.+.+++..++.|++.+...+..
T Consensus       280 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  359 (398)
T TIGR00895       280 LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGL  359 (398)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            68889999999999999999999999999999999955444444433333333335667777788899999999999999


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL  206 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  206 (355)
                      ..++.|.+|+++|++++++......+|..+||.+.+.+
T Consensus       360 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       360 YALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            99999999999999999999999999999999999875

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.33  E-value=1e-10  Score=110.08  Aligned_cols=129  Identities=14%  Similarity=0.128  Sum_probs=98.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HhhHHh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIG--IGLAMH  166 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~--~g~~~~  166 (355)
                      .|.+..+.+.+.+...++.+++.++.|++.||+|||+.+..+.++..+..++....++.....+.-++.|++  ..+..+
T Consensus       261 ~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (426)
T PRK12307        261 EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGG  340 (426)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhH
Confidence            578888999999999999999999999999999999998888877766655444332211122222333332  223345


Q ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHH
Q 018453          167 AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYG  218 (355)
Q Consensus       167 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~  218 (355)
                      ..+.++.|.+|++.||+++|+......+|+.++|.+.+.+.+.. ++....+
T Consensus       341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~-g~~~~~~  391 (426)
T PRK12307        341 LVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM-GLGAALT  391 (426)
T ss_pred             HHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc-cHHHHHH
Confidence            66778899999999999999999999999999999999998876 6655433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.33  E-value=1.1e-10  Score=110.19  Aligned_cols=155  Identities=15%  Similarity=0.039  Sum_probs=106.9

Q ss_pred             cccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cc-HHHHHHHHHHHHHHHHHHH--hhh
Q 018453           71 TSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL--GR-RRELILAALLYLVGALVTA--LAP  145 (355)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Gr-r~~~~~~~~l~~~~~~~~~--~~~  145 (355)
                      ....+|.+..+      ++|++..+.++..+.+.++..++.++.|+++||+  ++ |.......+...+......  ...
T Consensus       262 ~~~~~p~~l~~------~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  335 (434)
T PRK11663        262 INDWGNLYMSE------TLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFA  335 (434)
T ss_pred             HHHHHHHHHHh------ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccc
Confidence            34455655532      1689999999999999999999999999999999  33 3322222111111111111  122


Q ss_pred             hHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHH
Q 018453          146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV  225 (355)
Q Consensus       146 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~  225 (355)
                      +.....+..+..|++...........+.|.+|+++|++++|+.+....+|..++|.+.+.+.+.. ||+..|++.+++++
T Consensus       336 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~-g~~~~f~~~~~~~~  414 (434)
T PRK11663        336 SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW-HWTGFFVVISIAAG  414 (434)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc-ccHHHHHHHHHHHH
Confidence            33333344444554433333344567789999999999999999999999999999999999887 89999998888877


Q ss_pred             HHHHHHh
Q 018453          226 IMGMGMW  232 (355)
Q Consensus       226 ~~~~~~~  232 (355)
                      +..+..+
T Consensus       415 ~~~~~~~  421 (434)
T PRK11663        415 ISALLLL  421 (434)
T ss_pred             HHHHHHH
Confidence            7655443

>PRK10054 putative transporter; Provisional

Probab=99.32  E-value=4.6e-11  Score=111.34  Aligned_cols=142  Identities=12%  Similarity=0.079  Sum_probs=117.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-PDFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      .+.+....+++.+...+.....+.+.|++.||+++|+.+..+.++..++.++..+. ++.+.+.++.++.|+|.+...+.
T Consensus       239 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~  318 (395)
T PRK10054        239 SDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPG  318 (395)
T ss_pred             cchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhh
Confidence            46677788888888888888888899999999999999998988888887777654 56777777889999999888888


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHh
Q 018453          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW  232 (355)
Q Consensus       168 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  232 (355)
                      ....+.+..|++.|+++.+..+ ...+|..+||.+++.+.+.. |....|++.+...++..+..+
T Consensus       319 ~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        319 EYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL-PPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc-ChhhHHHHHHHHHHHHHHHHH
Confidence            8889999999999999988755 56689999999999999988 888888876666555554444

>TIGR00898 2A0119 cation transport protein

Probab=99.32  E-value=1e-10  Score=112.55  Aligned_cols=136  Identities=21%  Similarity=0.139  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhhHHhHHHHHHHhhcC
Q 018453          100 TSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF--IIMVVGRFVFGIGIGLAMHAAPMYIAETAP  177 (355)
Q Consensus       100 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~  177 (355)
                      .....+..+++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +..++..++.+++.+...+....+..|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            344556778889999999999999999999999988888877776543  455556667777777788888999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcccch
Q 018453          178 TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP  238 (355)
Q Consensus       178 ~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp  238 (355)
                      ++.|++++|+.+....+|++++|.+.+ +.+ . ++...+++.++.++++.+..+++||+.
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE-K-WLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-H-HHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            999999999999999999999999988 433 2 567778887877777777777788864

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.32  E-value=3.7e-11  Score=114.29  Aligned_cols=171  Identities=19%  Similarity=0.191  Sum_probs=147.6

Q ss_pred             HHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Q 018453           58 ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG--RRRELILAALLYL  135 (355)
Q Consensus        58 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~l~~  135 (355)
                      .++..+..+........++.+...       .+++..+.+.+.++..+..+++.++.|+++|+..  ++....++.++.+
T Consensus       304 ~~~~~~~~~g~~~p~~~l~~~~~~-------~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~g  376 (509)
T KOG2504|consen  304 ALSNLFAYLGFNVPFVYLPSYAKS-------LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAG  376 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-------cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHH
Confidence            333333334444445556666664       7999999999999999999999999999999988  5566667888888


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhH
Q 018453          136 VGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY  215 (355)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  215 (355)
                      ++.+...++++++.++..-.+.|++.|......+..+.|..+.++-..+.|+...+.+++.++||++++.+.+..++|..
T Consensus       377 l~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~  456 (509)
T KOG2504|consen  377 LARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDH  456 (509)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeee
Confidence            88888999999999999999999999999999889999999999999999999999999999999999999998877999


Q ss_pred             HHHhHHHHHHHHHHHHhhcc
Q 018453          216 MYGASTPLAVIMGMGMWWLP  235 (355)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~  235 (355)
                      .|+++++..+++.+.+++.+
T Consensus       457 ~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  457 AFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ehhhcChHHHHHHHHHHHhH
Confidence            99999999888887777765

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.31  E-value=6.4e-11  Score=113.91  Aligned_cols=139  Identities=13%  Similarity=-0.002  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhHHhHHHHHHHhhc
Q 018453          101 SGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD----FIIMVVGRFVFGIGIGLAMHAAPMYIAETA  176 (355)
Q Consensus       101 ~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~  176 (355)
                      .+..++.+++.++.+++.||+|||+.++++.++.+++.++.++..+    ...+...-+...++..+..+....+..|.+
T Consensus       342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            3445567778899999999999999998888777776665554321    111111111112222223456677789999


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cchhHHHHhHHHHHHHHHHHHhhcccchh
Q 018453          177 PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV---------AGWRYMYGASTPLAVIMGMGMWWLPASPR  239 (355)
Q Consensus       177 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~---------~~w~~~~~~~~~~~~~~~~~~~~~~esp~  239 (355)
                      |++.|+++.++.+....+|++++|.+.+.+.+..         .++...|++.++++++..+..+++||+..
T Consensus       422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~  493 (502)
T TIGR00887       422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG  493 (502)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence            9999999999999999999999999999888632         14566777777777766666667788743

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.30  E-value=5.6e-10  Score=105.37  Aligned_cols=119  Identities=19%  Similarity=0.266  Sum_probs=101.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhhHHhHHHH
Q 018453           92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-PDFIIMVVGRFVFGIGIGLAMHAAPM  170 (355)
Q Consensus        92 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~  170 (355)
                      +....+++.+...++.+++.++.+++.||+|+|+.+.++.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567788888899999999999999999999999999988888887776664 35667777888899999988888888


Q ss_pred             HHHhhcC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018453          171 YIAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV  210 (355)
Q Consensus       171 ~~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  210 (355)
                      +++|..+       ++.+|...++.+....+|..+++.+.+.+.+..
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9888865       566899999999999999999999999988654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.29  E-value=2.7e-10  Score=107.49  Aligned_cols=146  Identities=13%  Similarity=-0.003  Sum_probs=96.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--h--hhhHHHHHHHHHHHHHHHhhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA--L--APDFIIMVVGRFVFGIGIGLA  164 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~--~--~~~~~~~~~~r~l~G~~~g~~  164 (355)
                      +|.+..+.+...++..++..+++++.|+++||+|||+.+.+..++..+..+...  .  ..+....+..-.+.+++.+..
T Consensus       274 ~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (432)
T PRK10406        274 AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFY  353 (432)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence            688888889988888888899999999999999999988776555433332111  1  122222222222233333444


Q ss_pred             HhHHHHHHHhhcCCCchhHHHHHHHHHHHH-HHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcc
Q 018453          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLP  235 (355)
Q Consensus       165 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  235 (355)
                      .+....++.|++|++.|++++|+.+...++ ++...|.+.+.+ +..+.|...+++.++..++..+..++++
T Consensus       354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l~  424 (432)
T PRK10406        354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLMLH  424 (432)
T ss_pred             HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence            455677889999999999999998765443 344577777754 4443466666666666666655555543

>PRK10504 putative transporter; Provisional

Probab=99.29  E-value=2.6e-10  Score=108.81  Aligned_cols=122  Identities=19%  Similarity=0.237  Sum_probs=104.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA---PDFIIMVVGRFVFGIGIGLAM  165 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~  165 (355)
                      +|.++.+.++......++..++.++.+++.||+|+|+.+..+.++.++..++..+.   .+.+.+.+..++.|++.+...
T Consensus       292 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  371 (471)
T PRK10504        292 LGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRF  371 (471)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH
Confidence            58889999999999999999999999999999999999998888887776665553   334444556778888888888


Q ss_pred             hHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018453          166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV  210 (355)
Q Consensus       166 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  210 (355)
                      +.....+.+..|++.++.+.++.+....+|..+|+.+++.+.+..
T Consensus       372 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        372 SSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888999999999999999999999999999999999999887644

>TIGR01272 gluP glucose/galactose transporter

Probab=99.29  E-value=5e-10  Score=100.69  Aligned_cols=131  Identities=15%  Similarity=0.169  Sum_probs=106.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|+++.+.++..+.+..+.++|.++.+++.||+|+|+.+.++.++..++.++....++...+ .+-++.|++.+..+|..
T Consensus       173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~  251 (310)
T TIGR01272       173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTI  251 (310)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999888888888777666555443333 35568899999999999


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHH
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPL  223 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~  223 (355)
                      .....+..|++ .+++.++. ....+|++++|.+.|.+.+.. |.+..|++..+.
T Consensus       252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~-g~~~a~~v~~~~  303 (310)
T TIGR01272       252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCL-GIQLAFALPVPC  303 (310)
T ss_pred             HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhc-cchHHHHHHHHH
Confidence            98888888754 46666765 566799999999999999877 788888744433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.29  E-value=6.7e-11  Score=106.46  Aligned_cols=149  Identities=17%  Similarity=0.161  Sum_probs=136.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|++..+..++.....+..++|+++.|++.||+|.|+++.++.++..+.++...+......+.++-.+.|...|+.+...
T Consensus       283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~S  362 (438)
T COG2270         283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASS  362 (438)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHH
Confidence            89999999999999999999999999999999999999999999999888877777777777788899999999999999


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcccc
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS  237 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~es  237 (355)
                      -+|..+..|+++-++.+|++......++.+||.+-+.+.+..++-|..+....++.++.+++.+.+|+.
T Consensus       363 RSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         363 RSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            999999999999999999999999999999999999999888788988888888877777777777654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.28  E-value=5.2e-11  Score=109.16  Aligned_cols=122  Identities=20%  Similarity=0.254  Sum_probs=111.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD-FIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      +|.+..+.+++.+...++.+++.++.+++.||+|||+.+..+..+.+++.++..+.++ .+.+++..++.|++.+...+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  321 (365)
T TIGR00900       242 LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVP  321 (365)
T ss_pred             hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            5888999999999999999999999999999999999998888888888777777664 888888999999999999999


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018453          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV  210 (355)
Q Consensus       168 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  210 (355)
                      ...++.|..|+++|++..++.+....+|..+++.+.+.+.+..
T Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       322 QGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999987653

>PRK09669 putative symporter YagG; Provisional

Probab=99.27  E-value=4.6e-11  Score=113.13  Aligned_cols=148  Identities=18%  Similarity=0.108  Sum_probs=107.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----hccH-HHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRR-RELILAALLYLVGALVTALAPD------FIIMVVGRFVF  157 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~r~l~  157 (355)
                      +|++....|.+.++..+...+..++.|+++||    +||| +.++.+.+..++..++....++      ...+++..++.
T Consensus        40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~  119 (444)
T PRK09669         40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL  119 (444)
T ss_pred             cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence            89999999999999999999999999999998    7775 5555676666666655444432      34455566666


Q ss_pred             HHHHhhHHhHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc------ccchhHHHHhHHHHHHHHHHH
Q 018453          158 GIGIGLAMHAAPMYIAETA-PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL------VAGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       158 G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~------~~~w~~~~~~~~~~~~~~~~~  230 (355)
                      +.+.........++..|+. ++++|++..++-..+..+|..+++.+...+...      ..+|+..+.+.++++++..+.
T Consensus       120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~  199 (444)
T PRK09669        120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC  199 (444)
T ss_pred             HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            7776667777778889988 557899988888888888888777655443321      127888888777776665444


Q ss_pred             Hh-hccc
Q 018453          231 MW-WLPA  236 (355)
Q Consensus       231 ~~-~~~e  236 (355)
                      .+ ..+|
T Consensus       200 ~~~~~~e  206 (444)
T PRK09669        200 CFFMTKE  206 (444)
T ss_pred             HhCCeEE
Confidence            33 3444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.27  E-value=7.3e-10  Score=102.80  Aligned_cols=218  Identities=16%  Similarity=0.150  Sum_probs=140.6

Q ss_pred             hcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhhh
Q 018453           68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR-RRELILAALLYLVGALVTALAPD  146 (355)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~l~~~~~~~~~~~~~  146 (355)
                      .+...+.++.+.++       .|.|..|+|.+.+...+..+++++++|.++||+++ |+.+.+..++.++..+.....++
T Consensus        18 ~G~~~p~~~~~L~~-------~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~   90 (400)
T PF03825_consen   18 YGAFLPYLPLYLES-------RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSS   90 (400)
T ss_pred             HHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33344556666665       69999999999999999999999999999999864 66666777777776767777788


Q ss_pred             HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH-HHhhccc--cchhHHHHhHHHH
Q 018453          147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIG-SLLVDLV--AGWRYMYGASTPL  223 (355)
Q Consensus       147 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~-~~l~~~~--~~w~~~~~~~~~~  223 (355)
                      ++.+++..++..+......+...++..+...  +++.-.|-.-.+.++|-+++.... ..+....  .+....+++.++.
T Consensus        91 f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  168 (400)
T PF03825_consen   91 FWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAIL  168 (400)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence            8888888888888888888888888888765  234444555556666665554432 2222211  1233455666655


Q ss_pred             HHHHHHHHhhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcc
Q 018453          224 AVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHG  303 (355)
Q Consensus       224 ~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (355)
                      .++.....+.+|+.|..   +.    .                                   .++.++....+..+++|+
T Consensus       169 ~~ll~~~~l~lp~~~~~---~~----~-----------------------------------~~~~~~~~~~~~~~llk~  206 (400)
T PF03825_consen  169 SLLLAGFALFLPKTPPK---RS----A-----------------------------------KESVKKLLGLDALKLLKN  206 (400)
T ss_pred             HHHHHHHHHhCCCCccc---cc----c-----------------------------------CCCcccccchHHHHHhcC
Confidence            55555555667877620   00    0                                   000012223345578888


Q ss_pred             cchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHhcc
Q 018453          304 KCLKALIIGAGLVLFQQITGQPSVLYYAASILQDFLQ  340 (355)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (355)
                      |.....++..++...    ....+..|.+.++++.+.
T Consensus       207 ~~~~~Fll~~~l~~~----~~~~~~~f~~~yl~~~gg  239 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGI----SHAAYYTFFSIYLQELGG  239 (400)
T ss_pred             ccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccc
Confidence            766555554443333    245677888888998884

>PRK15075 citrate-proton symporter; Provisional

Probab=99.26  E-value=5.1e-10  Score=105.71  Aligned_cols=136  Identities=21%  Similarity=0.140  Sum_probs=98.5

Q ss_pred             cccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHH---hhhh
Q 018453           71 TSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL-VTA---LAPD  146 (355)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~-~~~---~~~~  146 (355)
                      .....|.+.++      .+|++..+.++......++.+++.++.|+++||+|||+.++.+.++..+..+ ...   ..++
T Consensus       257 ~~~~~p~~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (434)
T PRK15075        257 ITVYTPTFGKT------VLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPS  330 (434)
T ss_pred             HHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            34445555442      1588888889988899999999999999999999999988776554433221 111   1233


Q ss_pred             HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHH-HHHHHHHHHHHHHHHhhccccch
Q 018453          147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEF-FIVLGMVGGYGIGSLLVDLVAGW  213 (355)
Q Consensus       147 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~i~~~l~~~~~~w  213 (355)
                      ...+.+..++.|++.+...+....++.|.+|++.|+++.++... +..+++.++|.+.+.+.+.. |+
T Consensus       331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~-g~  397 (434)
T PRK15075        331 FARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT-GD  397 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc-CC
Confidence            44444555666777777777777889999999999999998644 44456788999999998876 54

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.26  E-value=5.8e-10  Score=102.19  Aligned_cols=182  Identities=13%  Similarity=0.148  Sum_probs=141.6

Q ss_pred             chHHHHHHHHH-HHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Q 018453           46 SVSAAILPFLF-PALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR  124 (355)
Q Consensus        46 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr  124 (355)
                      +.++.|...+. ....++.+.+++. .......+-++       -+.+....|.+.+...+.-++.-.+.+++.+|+|.|
T Consensus       218 k~~~fw~~~l~v~g~~~~Y~vfdqq-f~~y~~~~f~~-------~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k  289 (412)
T PF01306_consen  218 KMRNFWFFVLFVIGVAAIYDVFDQQ-FPIYFASFFQS-------AGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK  289 (412)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSSS-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc-------cccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence            34455554333 3333455555554 33333333332       355677889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHH-HHHHHHHHHHHHHHHH
Q 018453          125 RELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISL-KEFFIVLGMVGGYGIG  203 (355)
Q Consensus       125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~  203 (355)
                      +.++++.+++.+=.++++++++.+.+.+.+.+.|+..+........|+.+.+|++..++...+ .+....+|.++.+.++
T Consensus       290 ~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~  369 (412)
T PF01306_consen  290 NLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLA  369 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            999999999999999999999999999999999999999999999999999999988888887 4899999999999999


Q ss_pred             HHhhccccchhHHHHhHHHHHHHHHHHH-hhccc
Q 018453          204 SLLVDLVAGWRYMYGASTPLAVIMGMGM-WWLPA  236 (355)
Q Consensus       204 ~~l~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e  236 (355)
                      |.+.++. |++.+|++.+.+.++..++. +.+++
T Consensus       370 G~lyd~~-G~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  370 GYLYDRI-GFQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HhhHhhc-CcHHHHHHHHHHHHHHHHHheeeecC
Confidence            9999998 99999998888877655544 44543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.26  E-value=4.9e-10  Score=101.68  Aligned_cols=142  Identities=21%  Similarity=0.256  Sum_probs=120.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-PDFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      .|.+.+..+++..++.++..+|+.++|++.|| +.|+.+.....+.++..+...+. .+.+..++.-++.|+..+.....
T Consensus       242 ~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~  320 (394)
T COG2814         242 AGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQG  320 (394)
T ss_pred             cCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhH
Confidence            68899999999999999999999999999999 89998888878877777766654 45556666777788877766666


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       168 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      ....+.+ .-++.+..+.++.....++|..+|..+++.+.++. |+....++.+++.+++++..++
T Consensus       321 ~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~-g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         321 LQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL-GYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             HHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHH
Confidence            6666676 44588999999999999999999999999999996 9999999999998887776555

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.25  E-value=1.3e-10  Score=110.95  Aligned_cols=144  Identities=15%  Similarity=-0.011  Sum_probs=102.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR-------RELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGI  161 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~  161 (355)
                      +|++..+.+.+.+++.++.+++.+++|+++||+|||       ..+.+..++.++..++....++.+..++..++.+++.
T Consensus       283 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~  362 (476)
T PLN00028        283 FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFV  362 (476)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999875       2222333333333344444555555555566667766


Q ss_pred             hhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcc
Q 018453          162 GLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLP  235 (355)
Q Consensus       162 g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  235 (355)
                      +........++.+.. +++||...|+...+..+|+.+++.+.+  .+..++|+..|++.+++.+++.++.++++
T Consensus       363 ~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        363 QAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            555555555666655 468999999998877788877776643  22233799999999888888777666654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.25  E-value=7.5e-10  Score=103.01  Aligned_cols=141  Identities=19%  Similarity=0.044  Sum_probs=109.2

Q ss_pred             ccCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSL-YGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL------APDFIIMVVGRFVFGIGI  161 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~r~l~G~~~  161 (355)
                      .|++.++.|++..... ++.+++.++.|++.||+|+|+.+.++.++.++..+....      .++...+.....+.+++.
T Consensus       238 ~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (390)
T TIGR02718       238 AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLIT  317 (390)
T ss_pred             cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHH
Confidence            6999999999988776 466788899999999999999988877665333332221      123334444555666777


Q ss_pred             hhHHhHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHH
Q 018453          162 GLAMHAAPMYIAETAPT-PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       162 g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~  230 (355)
                      |...+.....+.+..++ +.+++.+++.+....+|..+||.+++.+.+.. ||+..|++.+++.+++.+.
T Consensus       318 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       318 GITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHH
Confidence            77778888887777776 88999999999999999999999999999887 8999998887776665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.24  E-value=1.7e-10  Score=103.86  Aligned_cols=170  Identities=21%  Similarity=0.133  Sum_probs=135.5

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHH-H
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL--GRRRELILA-A  131 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~-~  131 (355)
                      ..+++++++.+.....+.-..|.+..+      ..|+|...+++..+.+-++.+.|.++.|+++||+  |||....+. +
T Consensus       255 W~la~a~vfvYivR~gi~dW~p~YL~e------~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~  328 (448)
T COG2271         255 WLLALANVFVYVVRYGINDWGPLYLSE------VKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFM  328 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHH------hcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHH
Confidence            455677777777887788888877763      2699999999999999999999999999999996  677655443 3


Q ss_pred             HHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHH-HHHHHHHHHHHhhc
Q 018453          132 LLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVD  208 (355)
Q Consensus       132 ~l~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~  208 (355)
                      ++..++.+..-.++  |+++..++.++.|+..-+..-.......|..|++--|++.|+...+.-+ |.+.+....+.+.+
T Consensus       329 ~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d  408 (448)
T COG2271         329 LLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD  408 (448)
T ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe
Confidence            33344444444444  4588888999999988888888888899999999999999999888888 99999999999888


Q ss_pred             cccchhHHHHhHHHHHHHHHHHH
Q 018453          209 LVAGWRYMYGASTPLAVIMGMGM  231 (355)
Q Consensus       209 ~~~~w~~~~~~~~~~~~~~~~~~  231 (355)
                      .. ||...|++..+.++++.++.
T Consensus       409 ~~-gW~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         409 TW-GWDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             cC-CCcchHHHHHHHHHHHHHHH
Confidence            86 99999988777766655443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.24  E-value=9.7e-11  Score=107.87  Aligned_cols=128  Identities=23%  Similarity=0.231  Sum_probs=96.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHH-HHH-HHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGR-RRELI-LAA-LLYLVGALVTAL--APDFIIMVVGRFVFGIGIGL  163 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~-~~~-~l~~~~~~~~~~--~~~~~~~~~~r~l~G~~~g~  163 (355)
                      +|.+..+.+++.+...++.+++.++.|++.||+++ |+... ... .+..++..+...  ..+.....+..++.|+..+.
T Consensus       247 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  326 (379)
T TIGR00881       247 KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYG  326 (379)
T ss_pred             hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999999999998643 33222 211 122222222222  23445556667777876666


Q ss_pred             HHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH
Q 018453          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMY  217 (355)
Q Consensus       164 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~  217 (355)
                      ..+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+.. ||++.|
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~f  379 (379)
T TIGR00881       327 PQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF-GWAGAF  379 (379)
T ss_pred             hhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh-cccccC
Confidence            66667788999999999999999999999999999999999999887 888653

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.23  E-value=1.8e-10  Score=106.01  Aligned_cols=146  Identities=21%  Similarity=0.182  Sum_probs=129.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAM  165 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~  165 (355)
                      +|++++++.-+.+++..-.-+..+++||++||+ |+|+.+..+.++..+|.++.+...  +...++++.++.++|.|..=
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K  135 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK  135 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence            678998888888888888888999999999996 999999999999999999999874  68889999999999999999


Q ss_pred             hHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcc
Q 018453          166 HAAPMYIAETAPTPM--RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLP  235 (355)
Q Consensus       166 ~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  235 (355)
                      +.....+.|.+|+++  |-.+.++++++.++|++++|++.+++.+.. ||...|.+.++-..+.++..+..+
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-GWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999997644  777888999999999999999999999988 899999998888877777666554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.22  E-value=1.6e-09  Score=96.23  Aligned_cols=149  Identities=20%  Similarity=0.305  Sum_probs=111.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|++..+++.+...-+...++...+.|.++||+|||+.-++-+++.+++++... .++++.++++|++.|++....+.+-
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-~~~~~~L~~GRvlgGiaTSLLfS~F  142 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-SSNYPVLLLGRVLGGIATSLLFSAF  142 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999999998999888886544 4889999999999999999998888


Q ss_pred             HHHH-Hhh----cCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhhcccc-chhHHHHhHHHHHHHHHHHHh-hcccch
Q 018453          169 PMYI-AET----APTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLVA-GWRYMYGASTPLAVIMGMGMW-WLPASP  238 (355)
Q Consensus       169 ~~~~-~e~----~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~l~~~~~-~w~~~~~~~~~~~~~~~~~~~-~~~esp  238 (355)
                      -+++ .|.    +|++..+...+... ..+++-.+.+..++..+.+..+ |-..+|....++.+++.++.. ..+|+.
T Consensus       143 EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENy  220 (354)
T PF05631_consen  143 ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENY  220 (354)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence            7754 444    24444444444343 3445555566666666665441 347888888777777655443 356653

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.22  E-value=1.5e-09  Score=98.43  Aligned_cols=158  Identities=18%  Similarity=0.133  Sum_probs=123.9

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Q 018453           45 YSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR  124 (355)
Q Consensus        45 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr  124 (355)
                      +-.+++|+.++..++-.+..++.-...++.......       +|| +....-|+..++++.++...+++-|+.|++|-|
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~-------~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR  109 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNS-------FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLR  109 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHH-------Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchH
Confidence            445566776666666666666655444444333333       267 777888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh------hHH--HHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Q 018453          125 RELILAALLYLVGALVTALAP------DFI--IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGM  196 (355)
Q Consensus       125 ~~~~~~~~l~~~~~~~~~~~~------~~~--~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~  196 (355)
                      ..++++..+.+++..+-..+.      .++  ....+..+.+.++-.....-.-...-|+|+++|..+..+-.+++.+|.
T Consensus       110 ~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGv  189 (480)
T KOG2563|consen  110 TALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGV  189 (480)
T ss_pred             HHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHH
Confidence            999999999999999887652      234  666778888887766666656677788999999999999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 018453          197 VGGYGIGSLLVDLV  210 (355)
Q Consensus       197 ~~~~~i~~~l~~~~  210 (355)
                      ++|.++...++.+.
T Consensus       190 avg~llppilV~~~  203 (480)
T KOG2563|consen  190 AVGFLLPPILVPSS  203 (480)
T ss_pred             HHHhhccceecCCC
Confidence            99999998888543

>TIGR00788 fbt folate/biopterin transporter

Probab=99.20  E-value=4.9e-10  Score=106.60  Aligned_cols=169  Identities=14%  Similarity=-0.024  Sum_probs=122.6

Q ss_pred             HHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cHHHHHHHHHHH
Q 018453           60 GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG-----RRRELILAALLY  134 (355)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~l~  134 (355)
                      .++..|+. ......++.+..+      ++|++..+.+.+.+...+...+-.+ +|.++||++     ||+.++++.++.
T Consensus        34 ~y~~qGl~-~l~~~~~~~~l~~------~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        34 VLFVKGIA-GLMRLPLSPMLTD------DLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHhhHH-HHhhhhhhHHHHH------hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence            34556666 4444444444442      2799999999999999999998666 999999997     777777777666


Q ss_pred             H-HHHHHHHhhhhHH-HHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHH---HHHHHHHHHHHHHHHHHHhhcc
Q 018453          135 L-VGALVTALAPDFI-IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISL---KEFFIVLGMVGGYGIGSLLVDL  209 (355)
Q Consensus       135 ~-~~~~~~~~~~~~~-~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~---~~~~~~~g~~~~~~i~~~l~~~  209 (355)
                      . +.....+..++.. ...+..++.+++.+...++.-.+..|..+ +++....+.   ......+|.++|+.+++.+.+.
T Consensus       106 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~  184 (468)
T TIGR00788       106 SAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK  184 (468)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3 3333333334433 33447889999999999999999999998 555443333   3444458999999999999887


Q ss_pred             ccchhHHHHhHHHHHHHHHHHHhhcccch
Q 018453          210 VAGWRYMYGASTPLAVIMGMGMWWLPASP  238 (355)
Q Consensus       210 ~~~w~~~~~~~~~~~~~~~~~~~~~~esp  238 (355)
                      . +|+..|++.+++.++..+..++++|++
T Consensus       185 ~-~~~~~f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       185 T-LTRILFLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             c-CcchHHHHHHHHHHHHHHHHHhccccc
Confidence            7 899999998888777766667778753

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.20  E-value=4.9e-11  Score=112.40  Aligned_cols=204  Identities=20%  Similarity=0.232  Sum_probs=143.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHH-HHHHHHHHHHHHHHhh-h-------hHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD----ILGRRRELI-LAALLYLVGALVTALA-P-------DFIIMVVGRF  155 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~~~-~~~~l~~~~~~~~~~~-~-------~~~~~~~~r~  155 (355)
                      .|+++...|++..+.-+..++..++.|.++|    |+|||+..+ ++.++.+++.++.... +       ....+.+..+
T Consensus        32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~  111 (428)
T PF13347_consen   32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI  111 (428)
T ss_pred             cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence            6999999999999999999999999999999    899876555 5777777777777655 3       1223456667


Q ss_pred             HHHHHHhhHHhHHHHHHHhhcC-CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc------chhHHHHhHHHHHHHHH
Q 018453          156 VFGIGIGLAMHAAPMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA------GWRYMYGASTPLAVIMG  228 (355)
Q Consensus       156 l~G~~~g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~------~w~~~~~~~~~~~~~~~  228 (355)
                      +..++.........++..|+.+ +++|.+..+.-..+..+|.++...+.+.+.+..+      +|++..++.+++.++..
T Consensus       112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~  191 (428)
T PF13347_consen  112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF  191 (428)
T ss_pred             HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence            7788888888888889999997 5789999999999999998777777766663222      69999888888877765


Q ss_pred             HHH-hhcccchhHHHHhhccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcccchh
Q 018453          229 MGM-WWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLK  307 (355)
Q Consensus       229 ~~~-~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (355)
                      ++. +..+|.++.                                           .+.++++.+-....++++++|.++
T Consensus       192 ~i~~~~~ke~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~nr~~~  228 (428)
T PF13347_consen  192 LITFFFVKERSVE-------------------------------------------VTEQEKKISLRDSLRSLFRNRPFR  228 (428)
T ss_pred             hhhhheeeecccc-------------------------------------------ccccccccccccchhhhcccchHH
Confidence            544 445661100                                           000001223355678888888877


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHhHHHHH
Q 018453          308 ALIIGAGLVLFQQITGQPSVLYYAASIL  335 (355)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (355)
                      .++...++..+..........+|..+.+
T Consensus       229 ~l~~~~~~~~~~~~~~~~~~~y~~~~vl  256 (428)
T PF13347_consen  229 ILLLAFFLQWLAFALMNTFLPYYFTYVL  256 (428)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHh
Confidence            7777666655554433334444444443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.20  E-value=2.1e-10  Score=107.53  Aligned_cols=149  Identities=17%  Similarity=0.091  Sum_probs=102.7

Q ss_pred             cccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHhhhhHHH
Q 018453           71 TSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRE-LILAALLYLVGALVTALAPDFII  149 (355)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~~l~~~~~~~~~~~~~~~~  149 (355)
                      +...+|.+.++.     ..+.+..+.+++.+...++..++.++.|+++||+++|+. .....++..++.++.....+...
T Consensus       261 ~~~~~p~~l~~~-----~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (412)
T TIGR02332       261 INIWTPQILQSF-----NQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLI  335 (412)
T ss_pred             HHHHHHHHHHhc-----CCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            445566666530     135677888999999999999999999999999997764 33344444443333222223222


Q ss_pred             HHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHH
Q 018453          150 MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLA  224 (355)
Q Consensus       150 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~  224 (355)
                      .+++-++.+++.....+.......|.+|+++|++++|+.+....+|.+++|.+.+.+.+..++|+..+++.+++.
T Consensus       336 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       336 QLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            222223333333333344445556788999999999999999999999999999999988767999988766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.19  E-value=2.6e-09  Score=99.56  Aligned_cols=138  Identities=15%  Similarity=0.119  Sum_probs=110.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|++..+.+++...+.++.+++.++.+++.||.+++..+....+......++....++.+.+.+..++.|++.+...+..
T Consensus       247 ~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~  326 (394)
T PRK10213        247 AGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGW  326 (394)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence            68899999999999999999999999999999654443443333344444444555677778888899999999999999


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHH
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMG  228 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~  228 (355)
                      ..++.+..| +++++..++......+|..+|+.+++.+.+.. |++..++..+++.++..
T Consensus       327 ~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~-g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        327 STWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNI-GLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHHHHHHHHHHHHH
Confidence            989999887 55678888888899999999999999999886 88888888776655443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.19  E-value=1.3e-09  Score=101.18  Aligned_cols=140  Identities=12%  Similarity=0.127  Sum_probs=106.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL-APDFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      +|.+..+.+++.+...++.+++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..++.+++.++..+.
T Consensus       230 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  309 (382)
T PRK10091        230 SGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAP  309 (382)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHH
Confidence            6889999999999999999999999999999999999998888887877765543 445556666666777765544444


Q ss_pred             HHH-HHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHH
Q 018453          168 APM-YIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       168 ~~~-~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~  230 (355)
                      ... ...+..+++.++..  ..+....+|..+||.+++.+.+...+|+..+.+.++++++....
T Consensus       310 ~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~  371 (382)
T PRK10091        310 LQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS  371 (382)
T ss_pred             HHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence            443 34444444545544  34677899999999999999986558999999887776665443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.18  E-value=4.2e-10  Score=106.36  Aligned_cols=148  Identities=14%  Similarity=0.125  Sum_probs=100.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HHHHHHHhh--hhHHHHHHHHHHHHHHHhh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL---VGALVTALA--PDFIIMVVGRFVFGIGIGL  163 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~---~~~~~~~~~--~~~~~~~~~r~l~G~~~g~  163 (355)
                      +|.+..+.++....+.++.+++.++.|+++||+++++....+..+..   ++.++....  .+.+......++.|++...
T Consensus       282 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  361 (438)
T TIGR00712       282 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYG  361 (438)
T ss_pred             cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHcc
Confidence            58889999999999999999999999999999965432222322221   122221221  2334334444555554333


Q ss_pred             HHhHHHHHHHhhcCCCchhHHHHHHHHHHHHH-HHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHH-hhcccc
Q 018453          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLG-MVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM-WWLPAS  237 (355)
Q Consensus       164 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g-~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~es  237 (355)
                      ..........|.+|++.||+++|+.+....+| .+++|.+.+.+.+.. ||...|++.+++++++.+.. +++||.
T Consensus       362 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       362 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             HHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33333456789999999999999998887776 478999999999887 89999988777766655443 445553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09848 glucuronide transporter; Provisional

Probab=99.18  E-value=6.8e-09  Score=98.45  Aligned_cols=121  Identities=21%  Similarity=0.252  Sum_probs=98.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhHHh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAMH  166 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~  166 (355)
                      +|.+....++......++.+++.++.+++.||+|+|+.+.++.++.+++.++..+.+  +.+.+++..++.|+|.+...+
T Consensus       259 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~  338 (448)
T PRK09848        259 LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMT  338 (448)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence            566655555555555677888999999999999999999999988888877766643  566677778889999999999


Q ss_pred             HHHHHHHhhcCCC-------chhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018453          167 AAPMYIAETAPTP-------MRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (355)
Q Consensus       167 ~~~~~~~e~~~~~-------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  209 (355)
                      ...+...|..+.+       ++|...++.+....+|..+|+.+.+.+.+.
T Consensus       339 ~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        339 VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888888887643       469999999999999999999999887643

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.18  E-value=1e-09  Score=115.87  Aligned_cols=138  Identities=21%  Similarity=0.247  Sum_probs=117.8

Q ss_pred             ccCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSV-EIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      +|++.. +.+++.+...++.+++.++.|++.||+++++.+.++.++.+++.++..+..+.+.++++.++.|++.+...+.
T Consensus       263 ~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  342 (1146)
T PRK08633        263 LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVP  342 (1146)
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence            688888 9999999999999999999999999999999988888888888888887788888888899999999999899


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHH
Q 018453          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (355)
Q Consensus       168 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~  226 (355)
                      ...++.+.+|++.||+++++.+....+|.++++.+++.+.....++...|++.+.++++
T Consensus       343 ~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        343 LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888888776654222555666665555444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.18  E-value=1.2e-09  Score=101.92  Aligned_cols=141  Identities=16%  Similarity=0.093  Sum_probs=110.4

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           90 DLSSVEIGLITSGSLYGALIGSILAFNIAD-ILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        90 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +.++.+.+++.+...++..++..+.+++.| |++.++.+..+.++.+++.++.++.++++.+.+..++.|++.+...+..
T Consensus       239 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~  318 (400)
T PRK11646        239 AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPAR  318 (400)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccH
Confidence            346678888888877777666666666665 5676777778888888888777777888777778888999988888898


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc--c-hhHHHHhHHHHHHHHHHH
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA--G-WRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~--~-w~~~~~~~~~~~~~~~~~  230 (355)
                      ..++.+..|+++||+.+++.+....+|..+||.+++.+.+..+  + ....+++.++++++..+.
T Consensus       319 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        319 ETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987642  2 345555555555555444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.15  E-value=6.2e-10  Score=106.07  Aligned_cols=159  Identities=13%  Similarity=0.040  Sum_probs=106.0

Q ss_pred             cccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--------HHHHHHHH--HHHH
Q 018453           69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRE--------LILAALLY--LVGA  138 (355)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~--------~~~~~~l~--~~~~  138 (355)
                      ......+|.+..+      .+|.+..+.+++.++..++..++.++.|+++||+++|+.        +..+..+.  .+..
T Consensus       278 ~~~~~~lp~~l~~------~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (465)
T TIGR00894       278 TILPTYLPTFISW------VLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFA  351 (465)
T ss_pred             HHHHHHHHHHHHH------HhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            3344456666542      268899999999999999999999999999999865421        11111111  1111


Q ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchhH
Q 018453          139 LVTAL-APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV--AGWRY  215 (355)
Q Consensus       139 ~~~~~-~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~--~~w~~  215 (355)
                      +.... ..+....+++-.+.+.+.+...+.......|..|+ .+|...++.+....+|+.++|.+.+.+.+..  ++|+.
T Consensus       352 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~  430 (465)
T TIGR00894       352 YALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLI  430 (465)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHH
Confidence            11122 22334444444555555554445444555676665 8999999999999999999999999887643  36899


Q ss_pred             HHHhHHHHHHHHHHHHhhc
Q 018453          216 MYGASTPLAVIMGMGMWWL  234 (355)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~  234 (355)
                      .|++.+++.++..+...++
T Consensus       431 ~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       431 VFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             HHHHHHHHHHHHHHHeeee
Confidence            9999888877776655444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.15  E-value=1.9e-10  Score=101.40  Aligned_cols=133  Identities=17%  Similarity=0.181  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchh
Q 018453          103 SLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRG  182 (355)
Q Consensus       103 ~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~  182 (355)
                      ..+.-..|.++.+++.||+|||+.+....++.++..++...+.+.....+..+..-++..+.+.+.++|..|.+|.+-|+
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence            34566788999999999999999999999999999998887765444444444444555556677788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhcccch
Q 018453          183 QLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP  238 (355)
Q Consensus       183 ~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp  238 (355)
                      ++.|.......+|+++.|.++.. .+.  +-..+..+.+.+++++.+...++|-.+
T Consensus       470 tgvGtcSsmaRIggI~~p~iA~~-~e~--s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  470 TGVGTCSSMARIGGIFSPVIAMR-AEL--STSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             cchhhhhhHHhhhhhhhhHHHHH-hcc--ceeehHHHHHHHHHHHHHHheeeeecc
Confidence            99999999999999999999932 222  334555666777777777777777433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.14  E-value=8.7e-09  Score=95.67  Aligned_cols=148  Identities=22%  Similarity=0.276  Sum_probs=116.5

Q ss_pred             cc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh-hhHHHHH----HHHHHHHHHHh
Q 018453           89 YD-LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-PDFIIMV----VGRFVFGIGIG  162 (355)
Q Consensus        89 ~~-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-~~~~~~~----~~r~l~G~~~g  162 (355)
                      .| .+....+.+.++..++-++.-...+++..|+|.|+.+.++.+..++=..+.+.. ++.+...    ....+.|++.|
T Consensus       237 ~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~  316 (400)
T PF03825_consen  237 LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFG  316 (400)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHH
Confidence            45 667777877788788888898999999999999999999999999998888877 5544433    33457999999


Q ss_pred             hHHhHHHHHHHhhcCCCchhHHHHHHHH-HHHHHHHHHHHHHHHhhcccc-----chhHHHHhHHHHHHHHHHHH-hhcc
Q 018453          163 LAMHAAPMYIAETAPTPMRGQLISLKEF-FIVLGMVGGYGIGSLLVDLVA-----GWRYMYGASTPLAVIMGMGM-WWLP  235 (355)
Q Consensus       163 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~i~~~l~~~~~-----~w~~~~~~~~~~~~~~~~~~-~~~~  235 (355)
                      ........|+.+.+|++.|+++.+++.. ..++|..+|..++|++.+..+     .|...+.+.+++.++..+++ ++.+
T Consensus       317 ~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk  396 (400)
T PF03825_consen  317 LFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK  396 (400)
T ss_pred             HHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999865 579999999999999998652     24445555555555444333 3344


Q ss_pred             c
Q 018453          236 A  236 (355)
Q Consensus       236 e  236 (355)
                      |
T Consensus       397 ~  397 (400)
T PF03825_consen  397 P  397 (400)
T ss_pred             C
Confidence            4

>TIGR00896 CynX cyanate transporter

Probab=99.14  E-value=1.7e-09  Score=99.27  Aligned_cols=125  Identities=20%  Similarity=0.173  Sum_probs=100.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      .|.+..+.+.+.+...++.++++++.|++.||+ +||+.+.++.++.+++.++..+..+..... ..++.|++.|...+.
T Consensus       227 ~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~  305 (355)
T TIGR00896       227 HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPL  305 (355)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHH
Confidence            688899999999999999999999999999999 566677777777777776666654433222 456789999888888


Q ss_pred             HHHHHHhhcC-CCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 018453          168 APMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR  214 (355)
Q Consensus       168 ~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  214 (355)
                      ....+.+..+ +++++...++.+....+|..++|.+.+.+.+..++|.
T Consensus       306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       306 ALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            7777665554 5667899999999999999999999999998775554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.14  E-value=1.9e-09  Score=100.79  Aligned_cols=148  Identities=18%  Similarity=0.144  Sum_probs=114.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhh---hHH------HHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP---DFI------IMVVGRFVFGI  159 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~---~~~------~~~~~r~l~G~  159 (355)
                      -|++..++.++.....+...+..+++.++.||+|||+.++.+..++.+..++.....   +..      ..+++.++..+
T Consensus       300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~  379 (485)
T KOG0569|consen  300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFII  379 (485)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999999999999999888877665532   111      12344444444


Q ss_pred             HHhh-HHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHH-HHhhcccc
Q 018453          160 GIGL-AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM-GMWWLPAS  237 (355)
Q Consensus       160 ~~g~-~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~es  237 (355)
                      +.+. ..|+..-+.+|++|++.|..++++....+.++.++-...-..+.+..++  +.|++..+++++..+ .+..+|||
T Consensus       380 ~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  380 SFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             hhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhCccc
Confidence            3333 3577788899999999999999999999888888877777777666633  677777777666554 55669998


Q ss_pred             h
Q 018453          238 P  238 (355)
Q Consensus       238 p  238 (355)
                      .
T Consensus       458 k  458 (485)
T KOG0569|consen  458 K  458 (485)
T ss_pred             C
Confidence            4

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.14  E-value=7.9e-10  Score=116.69  Aligned_cols=138  Identities=19%  Similarity=0.063  Sum_probs=113.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh--------------------hhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA--------------------PDFI  148 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~--------------------~~~~  148 (355)
                      +|.+..+.|++.+.+.+|.++++++.|+++++.++++.+..+.++.+++.+...+.                    .+.+
T Consensus       256 ~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (1140)
T PRK06814        256 LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGW  335 (1140)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccH
Confidence            68899999999999999999999999999988887776666665555555444432                    5677


Q ss_pred             HHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHH
Q 018453          149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (355)
Q Consensus       149 ~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~  226 (355)
                      .++++.++.|++.+...+...+++.+.+|++.||+++|+.++...+|..+++++.+.+.....++...+++.+++.++
T Consensus       336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLI  413 (1140)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            778888999999999999999999999999999999999999999999999999998875434677776665554443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.14  E-value=5.2e-09  Score=97.86  Aligned_cols=136  Identities=17%  Similarity=0.163  Sum_probs=107.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHhh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-----PDFIIMVVGRFVFGIGIGL  163 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~  163 (355)
                      +|+++.+.++......++.+++.++.|++.||+|+|+.+.++.++..++.++..+.     .+.+.+++..++.|++.+.
T Consensus       246 ~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~  325 (406)
T PRK15402        246 EQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGL  325 (406)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHH
Confidence            68889999998888888999999999999999999999988888777777666543     2456667788899999888


Q ss_pred             HHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHH
Q 018453          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (355)
Q Consensus       164 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~  226 (355)
                      ..+........ .++++||+..++.+....+|..+|+.+.+.+.+.. ++....+..++..++
T Consensus       326 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~  386 (406)
T PRK15402        326 ANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG-GNGLFNLFNLANGLL  386 (406)
T ss_pred             HhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC-chHHHHHHHHHHHHH
Confidence            77766665543 44589999999999999999999999999988776 555444444433333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.13  E-value=5.1e-09  Score=97.85  Aligned_cols=140  Identities=19%  Similarity=0.194  Sum_probs=101.0

Q ss_pred             ccCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHH----HHHH
Q 018453           89 YDLSSVEIGLITSGSL-YGALIGSILAFNIADILGRRRELILAALLYLVGALVT---ALA-PDFIIMVVGRF----VFGI  159 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~---~~~-~~~~~~~~~r~----l~G~  159 (355)
                      +|++..+.+++.+... ++.+++.++.|++.||+|+|+.+.++.++.++..+..   ++. ++.+.+++.-+    ..|+
T Consensus       240 ~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~  319 (402)
T PRK11902        240 AGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGM  319 (402)
T ss_pred             cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence            6899999999886654 5689999999999999999998877776665554333   333 35555555543    4455


Q ss_pred             HHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          160 GIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       160 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      +.+...+....++.+..|.+    ..++.+...++|..+++.+++.+.+.. ||+..|.+.++++++++++.+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~-G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        320 GTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAY-GWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHH
Confidence            55555666666666666644    456666667788887778899999887 9999999988888777655433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.12  E-value=1.6e-08  Score=96.58  Aligned_cols=118  Identities=16%  Similarity=0.120  Sum_probs=94.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHhhHHh
Q 018453           92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL-----APDFIIMVVGRFVFGIGIGLAMH  166 (355)
Q Consensus        92 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~  166 (355)
                      +....+++.+...++.+++.++.+++.||+|+|+.+.++.++.+++.+...+     ..+.+.+++.-++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777777899999999999999999999998888776666554432     24566677777889999999999


Q ss_pred             HHHHHHHhhcC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018453          167 AAPMYIAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (355)
Q Consensus       167 ~~~~~~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  209 (355)
                      ...++++|..+       ++..|...++......+|..+++.+.+.+.+.
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98999999855       44456688999999999999999999988753

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.09  E-value=8.7e-10  Score=105.26  Aligned_cols=149  Identities=13%  Similarity=0.090  Sum_probs=105.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHH----Hhcc-HHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD----ILGR-RRELILAALLYLVGALVTALAPD------FIIMVVGRFVF  157 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~r~l~  157 (355)
                      +|++....|.+..+.-+..++..++.|.++|    |+|| |+.++++.+..+++.++....++      +..+++..++.
T Consensus        37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~  116 (473)
T PRK10429         37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW  116 (473)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999    6699 55666677777777655543221      23344556677


Q ss_pred             HHHHhhHHhHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc------ccchhHHHHhHHHHHHHHHHH
Q 018453          158 GIGIGLAMHAAPMYIAETA-PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL------VAGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       158 G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~------~~~w~~~~~~~~~~~~~~~~~  230 (355)
                      +++.....+...++..|+. ++++|.+..++-..+..+|+.+.+.+...+...      ..+|+...++.+++.++..+.
T Consensus       117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~  196 (473)
T PRK10429        117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII  196 (473)
T ss_pred             HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            7777778888888999998 588999999987777777766665554433211      115677666666665554433


Q ss_pred             H-hhcccc
Q 018453          231 M-WWLPAS  237 (355)
Q Consensus       231 ~-~~~~es  237 (355)
                      . +..+|.
T Consensus       197 ~~~~~~e~  204 (473)
T PRK10429        197 TLRNVHEV  204 (473)
T ss_pred             HHcCceec
Confidence            3 335553

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.07  E-value=1.1e-08  Score=95.40  Aligned_cols=132  Identities=17%  Similarity=0.106  Sum_probs=104.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|.++.+.|++.+...++.++++++.+++.||+++|+.+..+.. .++..++..+.++++...+..++.|++.+...+..
T Consensus       236 lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~  314 (393)
T PRK11195        236 LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPM  314 (393)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhH
Confidence            68899999999999999999999999999999999988777753 34444445556677777778889999988888888


Q ss_pred             HHHHHhhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHH
Q 018453          169 PMYIAETAPTPM-RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPL  223 (355)
Q Consensus       169 ~~~~~e~~~~~~-r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~  223 (355)
                      .+.+.+..|++. +|++.++.+....+|..++..+.+.+...  |-+..+++.+..
T Consensus       315 ~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  368 (393)
T PRK11195        315 NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL--GVPVVAVIVGFG  368 (393)
T ss_pred             HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHH
Confidence            888888766654 79999999999999999999998866433  445554443333

>PRK11462 putative transporter; Provisional

Probab=99.07  E-value=6.4e-09  Score=98.83  Aligned_cols=143  Identities=15%  Similarity=0.061  Sum_probs=108.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----hccHHHHH-HHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRRRELI-LAALLYLVGALVTALAPD------FIIMVVGRFVF  157 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~~-~~~~l~~~~~~~~~~~~~------~~~~~~~r~l~  157 (355)
                      +|+++...|.+..+.-+.-++..++.|.++||    +|||+..+ ++.+..+++.++....++      ...+++...+.
T Consensus        40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~  119 (460)
T PRK11462         40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL  119 (460)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence            79999999999999999999999999999996    68865554 566777777665544442      23345566677


Q ss_pred             HHHHhhHHhHHHHHHHhhcC-CCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc------cchhHHHHhHHHHHHHHHHH
Q 018453          158 GIGIGLAMHAAPMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV------AGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       158 G~~~g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~------~~w~~~~~~~~~~~~~~~~~  230 (355)
                      .++.......-.++..|..+ +++|++..++-..+..+|..+++.+...+....      .+|+....+.+++.+++.++
T Consensus       120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i  199 (460)
T PRK11462        120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF  199 (460)
T ss_pred             HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            88888888888889999986 788999999999999999888877765554322      25777777666665555443


Q ss_pred             H
Q 018453          231 M  231 (355)
Q Consensus       231 ~  231 (355)
                      .
T Consensus       200 ~  200 (460)
T PRK11462        200 C  200 (460)
T ss_pred             H
Confidence            3

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.07  E-value=6.8e-09  Score=89.20  Aligned_cols=160  Identities=20%  Similarity=0.159  Sum_probs=122.6

Q ss_pred             cccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh----
Q 018453           69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA----  144 (355)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~----  144 (355)
                      ...+..-|.+.+.       +|+|.++...+.+.-.+|..+| ++.|.+.|++|++.+++++.+...++..+...+    
T Consensus        19 Y~Fs~yS~~Lk~~-------l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~   90 (250)
T PF06813_consen   19 YTFSAYSPQLKSR-------LGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR   90 (250)
T ss_pred             cchhhhhHHHHHH-------hCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            3445556666665       8999999999999999999874 888999999999999999999999988877553    


Q ss_pred             ---hhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHH
Q 018453          145 ---PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAST  221 (355)
Q Consensus       145 ---~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~  221 (355)
                         .++|.+.+..++.|.+.+...+.......+.+| ++||++.|+.-...++++.+-..+...+.+.. .-...+.+..
T Consensus        91 i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~-~~~fll~la~  168 (250)
T PF06813_consen   91 IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD-PSSFLLFLAV  168 (250)
T ss_pred             cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC-hHHHHHHHHH
Confidence               246777777788888777777777777778898 57999999999999999988888877776553 3444444444


Q ss_pred             HHHHHHHHHHhhcccch
Q 018453          222 PLAVIMGMGMWWLPASP  238 (355)
Q Consensus       222 ~~~~~~~~~~~~~~esp  238 (355)
                      .+.++.++..++++..|
T Consensus       169 ~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  169 LPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             HHHHHHHHHhhheeccC
Confidence            45555555555655443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.07  E-value=3.6e-09  Score=101.21  Aligned_cols=121  Identities=19%  Similarity=0.265  Sum_probs=106.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL----APDFIIMVVGRFVFGIGIGLA  164 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~  164 (355)
                      +|.+..+.+++.....++..++.++.|++.||+|||+.+.++.++.+++..+..+    ..+.+.+....++.|++.+..
T Consensus       286 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~  365 (485)
T TIGR00711       286 LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCF  365 (485)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999998888888877662    134566677788999999988


Q ss_pred             HhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018453          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (355)
Q Consensus       165 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  209 (355)
                      .+.......+..|+++|+.+.++.+....+|+.+|+.+.+.+.++
T Consensus       366 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       366 FMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888788888889999999999999999999999999999988654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.07  E-value=1.2e-08  Score=94.49  Aligned_cols=127  Identities=19%  Similarity=0.333  Sum_probs=96.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHhh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-----PDFIIMVVGRFVFGIGIGL  163 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~  163 (355)
                      +|.++.+.+++.+...++.+++.++.|++.||+|+|+.+..+.++..++.++..+.     .+...++...++.|++.+.
T Consensus       237 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (385)
T TIGR00710       237 MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSM  316 (385)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999888887777776655543     2344555667788999998


Q ss_pred             HHhHHHHHHHhhcCCCchhHHHHHHHHHHHH-HHHHHHHHHHHhhccccchhHHHH
Q 018453          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVDLVAGWRYMYG  218 (355)
Q Consensus       164 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~~~~~w~~~~~  218 (355)
                      ..+....+..|..| ++|+++.++.+..... |.+.++.++ .+.+.. +|...+.
T Consensus       317 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~-~~~~~~~  369 (385)
T TIGR00710       317 ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNT-AWPMSLS  369 (385)
T ss_pred             HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccC-hHHHHHH
Confidence            88888888888876 6789999998766654 555555544 443332 4444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.04  E-value=1.1e-08  Score=94.28  Aligned_cols=151  Identities=19%  Similarity=0.077  Sum_probs=100.7

Q ss_pred             ccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---HHHHHH-HHHHHHHHHHHHHhhhhH
Q 018453           72 SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR---RRELIL-AALLYLVGALVTALAPDF  147 (355)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr---r~~~~~-~~~l~~~~~~~~~~~~~~  147 (355)
                      ...+|.+.++       .|++.. .+...++..++..++   .++++||..|   |+.... ..++.++...+.++..+.
T Consensus       212 ~~wlp~~L~~-------~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~  280 (368)
T TIGR00903       212 AIWLEAALRP-------AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNR  280 (368)
T ss_pred             HHHHHHHHHH-------CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            3467777664       466654 556555555555554   4677777654   333232 333334444444444444


Q ss_pred             HHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHH
Q 018453          148 IIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM  227 (355)
Q Consensus       148 ~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~  227 (355)
                      ...++.-++.|++.....+....+..|.+|++.||+++|+.+....+|++++|++.+.+..   +.+..|.+.+++.+++
T Consensus       281 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~---~~~~~f~~~~~~~~i~  357 (368)
T TIGR00903       281 LALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS---SAEAYFTFLAILITIA  357 (368)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHH
Confidence            4445555667777777777788899999999999999999999999999999999987773   6677777777777766


Q ss_pred             HHHHhhccc
Q 018453          228 GMGMWWLPA  236 (355)
Q Consensus       228 ~~~~~~~~e  236 (355)
                      .+..+++++
T Consensus       358 ~~~~~~~~~  366 (368)
T TIGR00903       358 FAIALLLPN  366 (368)
T ss_pred             HHHHHhCCC
Confidence            555444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10133 L-fucose transporter; Provisional

Probab=99.04  E-value=1.5e-08  Score=95.76  Aligned_cols=136  Identities=10%  Similarity=-0.014  Sum_probs=109.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|.++.+.++....+.++.++++++.+++.||+|+|+++..+.++.+++.++..+.++.. .+..-++.|++.+..+|..
T Consensus       290 ~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~~  368 (438)
T PRK10133        290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPTI  368 (438)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999888888777776666655542 2456678999999999999


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccc-hhHHHHhHHHHHHHHH
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG-WRYMYGASTPLAVIMG  228 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~-w~~~~~~~~~~~~~~~  228 (355)
                      .....+..|+ +.+.+.++..+ ..+|+.++|.+.+.+.+.. | -+..|++..+..+...
T Consensus       369 ~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~-g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        369 FSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAA-GNIPTAELIPALCFAVIF  426 (438)
T ss_pred             HHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHH
Confidence            9999998875 45777777754 4468888989999888876 5 7788876555544433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.03  E-value=8.9e-08  Score=87.54  Aligned_cols=239  Identities=16%  Similarity=0.145  Sum_probs=161.3

Q ss_pred             cccCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHh
Q 018453           88 WYDLSSVEIG-LITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMH  166 (355)
Q Consensus        88 ~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  166 (355)
                      |.|++..+.. -+.-+..-.+++..++...++|..|.|++++++.+..++..++..+.++...+-+..++.|++.+. ..
T Consensus        34 ~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-ev  112 (412)
T PF01770_consen   34 DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EV  112 (412)
T ss_pred             ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HH
Confidence            3688776654 455566667788888999999999999999999999999999999999999999999999998885 67


Q ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchhHHHHhHHHHHHHHHHHHhhcccchhHHHHhh
Q 018453          167 AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD-LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCA  245 (355)
Q Consensus       167 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~  245 (355)
                      +-.+|+.-..|+++.-++.+....+.-+|.+++..++..++. ...+++...++......++++..+++|..++-..-++
T Consensus       113 ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r  192 (412)
T PF01770_consen  113 AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHR  192 (412)
T ss_pred             HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceec
Confidence            778888888999999999999999999999999999888775 2236777777777777777777788887554332221


Q ss_pred             ccccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcc---cchhHHHHHHHHHHHHhhh
Q 018453          246 MKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHG---KCLKALIIGAGLVLFQQIT  322 (355)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  322 (355)
                      +.+..+      +    ..+...+..++..+.. ++..++.+......+..++.++++   -...+.++...++|....+
T Consensus       193 ~~~~~~------~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atc  261 (412)
T PF01770_consen  193 KPPAEQ------D----ANESESDKMNESPESS-SSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATC  261 (412)
T ss_pred             cCcccc------c----cccccccccccccccc-cccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence            110000      0    0000000000000000 000000000011112222222222   2334666777888999999


Q ss_pred             hhhHHHHhHHHHHHHh
Q 018453          323 GQPSVLYYAASILQDF  338 (355)
Q Consensus       323 ~~~~~~~~~~~~~~~~  338 (355)
                      |.+-+..|...+.++.
T Consensus       262 gy~qv~nYvQ~LW~~v  277 (412)
T PF01770_consen  262 GYYQVINYVQSLWDTV  277 (412)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999888

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.03  E-value=6.8e-09  Score=99.72  Aligned_cols=120  Identities=18%  Similarity=0.092  Sum_probs=106.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA---PDFIIMVVGRFVFGIGIGLAM  165 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~  165 (355)
                      +|.++.+.|+......++..++.++.|++.||+|+|+.+..+.++..++.++....   ++.+......++.|++.|...
T Consensus       290 ~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~  369 (495)
T PRK14995        290 HGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASAL  369 (495)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHH
Confidence            58899999999999999999999999999999999999888888887777655432   355566678899999999998


Q ss_pred             hHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018453          166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (355)
Q Consensus       166 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  208 (355)
                      +.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus       370 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        370 LASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999998764

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.03  E-value=9.6e-09  Score=94.28  Aligned_cols=141  Identities=17%  Similarity=0.232  Sum_probs=91.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--H-HHHHHHHhh----hhHH-HHHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY--L-VGALVTALA----PDFI-IMVVGRFVFGIG  160 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~--~-~~~~~~~~~----~~~~-~~~~~r~l~G~~  160 (355)
                      .|++.++.|.+.++..+..++.+++.|.++||.|.||.++....+.  . ...+...+.    .|.+ ..+++-+..|++
T Consensus        38 ~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~  117 (412)
T PF01306_consen   38 AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLV  117 (412)
T ss_dssp             H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTT
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999999999999776655433222  1 222222222    2322 233334445555


Q ss_pred             HhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       161 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      .....++.-+++.++.  ++.+.=.|-.-++.++|-+++..++|.+.+.  +....||+..+..++..++.++
T Consensus       118 f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~~fwi~s~~~~il~lll~~  186 (412)
T PF01306_consen  118 FNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--NPNIIFWIASAAAIILLLLLLL  186 (412)
T ss_dssp             TTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--CccHHHHHHHHHHHHHHHHHHH
Confidence            5566677676665554  3345556667888999999999999988864  5678888776665554444333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.02  E-value=6e-09  Score=95.63  Aligned_cols=105  Identities=15%  Similarity=0.191  Sum_probs=89.3

Q ss_pred             ccCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSL-YGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-----------PDFIIMVVGRFV  156 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~r~l  156 (355)
                      +|++..+.+.+.++.. ++.+++.+++|++.||+|||+.+..+.++.+++..+..+.           ++.+.+..+.++
T Consensus       239 ~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  318 (356)
T TIGR00901       239 MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITL  318 (356)
T ss_pred             cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence            6889999998887665 6788999999999999999999888888877776655443           345677788899


Q ss_pred             HHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHH
Q 018453          157 FGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIV  193 (355)
Q Consensus       157 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~  193 (355)
                      .+++.+...+....++.|.+|+++||+.+++.+...+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       319 EAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            9999999999999999999999999999999887654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.00  E-value=2.2e-09  Score=96.78  Aligned_cols=150  Identities=17%  Similarity=0.098  Sum_probs=118.1

Q ss_pred             cccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhh-------
Q 018453           73 CATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP-------  145 (355)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~-------  145 (355)
                      ..+|.+..+      .|+++..+.|.+...+.+...+..+.+|+++||+|.++++.+....++++..+..+..       
T Consensus       239 ~~l~~~~~~------~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~  312 (417)
T COG2223         239 AYLPMYLVT------QFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGG  312 (417)
T ss_pred             HHHHHHHHH------hcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCc
Confidence            345655553      2899999999999999999999999999999999999999999988888888777653       


Q ss_pred             hHHH----HHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHH
Q 018453          146 DFII----MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAST  221 (355)
Q Consensus       146 ~~~~----~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~  221 (355)
                      +...    ++...++.|+|.|..+    ..+..++|+ +-|...|+.....++|+++-|..-+...+..+++...|++..
T Consensus       313 ~~~~~~~~~l~l~~~~G~GnGsvf----k~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~  387 (417)
T COG2223         313 SFVVFVAVFLALFVFAGLGNGSVF----KMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLL  387 (417)
T ss_pred             chHHHHHHHHHHHHHhccCcchhe----eechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHH
Confidence            3333    3444555555555554    445555543 679999999999999999999999999988867999999988


Q ss_pred             HHHHHHHHHHhh
Q 018453          222 PLAVIMGMGMWW  233 (355)
Q Consensus       222 ~~~~~~~~~~~~  233 (355)
                      .+.+++.+..+.
T Consensus       388 ~~~~~a~v~~~~  399 (417)
T COG2223         388 AFYLVALVLTWA  399 (417)
T ss_pred             HHHHHHHHHHHH
Confidence            888877765544

>PRK09669 putative symporter YagG; Provisional

Probab=99.00  E-value=1.1e-07  Score=90.23  Aligned_cols=117  Identities=14%  Similarity=0.202  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhHHhHHHHH
Q 018453           94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL--APDFIIMVVGRFVFGIGIGLAMHAAPMY  171 (355)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~  171 (355)
                      ...+.+.....++.+++.+++++++||+|+|+.+.++.++.++..+...+  .++.+.+++..++.|++.+...+...+.
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am  343 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM  343 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666677888899999999999999999998887766654433322  3467777788889999999999999999


Q ss_pred             HHhhcC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018453          172 IAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV  210 (355)
Q Consensus       172 ~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  210 (355)
                      ++|..+       ++..|...+....+..+|..+|+.+++.+.+..
T Consensus       344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            998875       334567788899999999999999999887643

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.00  E-value=2.2e-08  Score=93.19  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=88.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|.+..+.+.+.+...++.+++.++.+++.||+|||+.+.++.++..++.++..+.++.+..+..-.+.+.|.+...+. 
T Consensus       234 ~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-  312 (392)
T PRK10473        234 MGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV-  312 (392)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-
Confidence            6888999999999999999999999999999999999999999888888887777665554444445555544443333 


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHH
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPL  223 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~  223 (355)
                       ....+..|.++|+   +......+++..+++.+++++.+.. |+.....+.+.+
T Consensus       313 -~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~-g~~~~~~~~~~~  362 (392)
T PRK10473        313 -AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVL-GISAWNMLIGIL  362 (392)
T ss_pred             -HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH
Confidence             2334555654443   3333445566666666666666554 555544444443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.98  E-value=5.2e-09  Score=95.42  Aligned_cols=112  Identities=31%  Similarity=0.440  Sum_probs=98.4

Q ss_pred             ccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhhH
Q 018453           89 YDLS-SVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA---PDFIIMVVGRFVFGIGIGLA  164 (355)
Q Consensus        89 ~~~s-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~  164 (355)
                      +|.+ ..+.+.+.+...++..++.++.|++.||+|+|+...+......+..+...+.   ++....++..++.|++.+..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  316 (352)
T PF07690_consen  237 LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIV  316 (352)
T ss_dssp             HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            7888 7899999999999999999999999999999888877777777666655543   34566777888999999999


Q ss_pred             HhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 018453          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGY  200 (355)
Q Consensus       165 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~  200 (355)
                      .+....++.|..|+++||++.++.+...++|..+||
T Consensus       317 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  317 FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.97  E-value=1e-08  Score=87.57  Aligned_cols=125  Identities=17%  Similarity=0.075  Sum_probs=101.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL-VTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      +|+|+...+.+.+....-..+.+++.|.++|++|++...+.+..+..+..- +..+  +.+.-..+..+.|+........
T Consensus       295 fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcs  372 (459)
T KOG4686|consen  295 FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACS  372 (459)
T ss_pred             hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHH
Confidence            899999999999999999999999999999999999877766555444333 2222  3334456677888888777777


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhH
Q 018453          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY  215 (355)
Q Consensus       168 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  215 (355)
                      ....++-..|.++-|++.|..+...++|-.+-|++++.+.++.+++-+
T Consensus       373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~  420 (459)
T KOG4686|consen  373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDN  420 (459)
T ss_pred             HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhh
Confidence            778888899999999999999999999999999999999987754443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.95  E-value=2.5e-08  Score=93.50  Aligned_cols=134  Identities=10%  Similarity=-0.014  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-hh-----hhHHHHHHHHHHHHHHHhhHHhHHHHHHH
Q 018453          100 TSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA-LA-----PDFIIMVVGRFVFGIGIGLAMHAAPMYIA  173 (355)
Q Consensus       100 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~-~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~~~  173 (355)
                      ..+..+...+..+++|+++||+|+|+++.++.++..+...... ..     .+.+.+.++.+...++.|........++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            4445677888999999999999999999988887766654322 22     24555555555544555555555566666


Q ss_pred             hhcCC---------------------CchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHh
Q 018453          174 ETAPT---------------------PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW  232 (355)
Q Consensus       174 e~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  232 (355)
                      +.+|+                     ++-|...|+......+|+++-|.+-+...+..+++...|++..+..+++.++.+
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            66663                     257788999999999999999988888887777899999888887777666554


Q ss_pred             h
Q 018453          233 W  233 (355)
Q Consensus       233 ~  233 (355)
                      +
T Consensus       452 ~  452 (462)
T PRK15034        452 L  452 (462)
T ss_pred             H
Confidence            4

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.91  E-value=1.3e-07  Score=83.85  Aligned_cols=178  Identities=23%  Similarity=0.156  Sum_probs=136.6

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Q 018453           44 NYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-G  122 (355)
Q Consensus        44 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G  122 (355)
                      -|+.+..|.+.+...+.++.++...    ..+|.+..|       .|+|..+.|+..+...+..+..++....+.+|. .
T Consensus       204 vw~~~~aW~vtLfmGlqS~~~Y~~~----~WLP~ili~-------~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n  272 (395)
T COG2807         204 VWRSPLAWQVTLFMGLQSLLYYIVI----GWLPAILID-------RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN  272 (395)
T ss_pred             cccCchhHHHHHHHHhhHHHHHHHH----HHHHHHHHH-------cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4555666776677776666655544    356666665       699999999999999999999999999999965 5


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHH
Q 018453          123 RRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPT-PMRGQLISLKEFFIVLGMVGGYG  201 (355)
Q Consensus       123 rr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~  201 (355)
                      +|+..+....+..++...+.+.+....+.. -++.|+|.|..++.....+..-... ++-+...++.|...-+=..+||.
T Consensus       273 ~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~  351 (395)
T COG2807         273 QRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW  351 (395)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence            677777777777788777777655333333 4899999999999999988877644 55566777778777777899999


Q ss_pred             HHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          202 IGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       202 i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      +.|++-|..++|+...+......++..+.-+.
T Consensus       352 l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         352 LFGFLHDATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             hHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999888777776665554433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.89  E-value=4.1e-09  Score=97.47  Aligned_cols=145  Identities=17%  Similarity=0.155  Sum_probs=130.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      ++-.+...|........|-++.-++.+++.+++|+-+++.+++.+.++=.+..++..|.|+.+..-+++|+..+..+..+
T Consensus       401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~  480 (618)
T KOG3762|consen  401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI  480 (618)
T ss_pred             cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence            56666777777778888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCchhHHHHHH-HHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhc
Q 018453          169 PMYIAETAPTPMRGQLISLK-EFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  234 (355)
                      .+|++...|++.|.++-++. ....++|--+|.+|++.+.+.. +-|..|.+.++.|++.+++...+
T Consensus       481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-g~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-GARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-hhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999987 6678999999999999999988 88999999888888876665554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.88  E-value=3.5e-08  Score=93.06  Aligned_cols=115  Identities=21%  Similarity=0.255  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhHHhHHHHH
Q 018453           94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAMHAAPMY  171 (355)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~  171 (355)
                      ...+.+..+..++.+++.++.++++||+|+|+.+..+.++.+++.++..+.+  +.+.+++..++.|++.+...+...+.
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~  339 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM  339 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence            5677888899999999999999999999999999999999999999888775  89999999999999999999999999


Q ss_pred             HHhhcC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018453          172 IAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (355)
Q Consensus       172 ~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  208 (355)
                      ++|..+       ++..|...++......+|..+++.+.+.+.+
T Consensus       340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~  383 (428)
T PF13347_consen  340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA  383 (428)
T ss_pred             cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            998876       3456899999999999999999999888774

>PRK11043 putative transporter; Provisional

Probab=98.87  E-value=2.5e-07  Score=86.38  Aligned_cols=120  Identities=16%  Similarity=0.146  Sum_probs=93.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH---Hh--hhhHHHHHHHHHHHHHHHhh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT---AL--APDFIIMVVGRFVFGIGIGL  163 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~---~~--~~~~~~~~~~r~l~G~~~g~  163 (355)
                      +|.+..+.++......++..++.+..+++.||+|+|+.+....++..++.+..   ..  .++.+.+++...+.|++.+.
T Consensus       233 ~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (401)
T PRK11043        233 MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGA  312 (401)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence            68899999998888889999999999999999999987665554444433322   22  23455556667788888888


Q ss_pred             HHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018453          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (355)
Q Consensus       164 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  209 (355)
                      ..+.......+..| ++||++.++.+.....+...++.+.+.+.+.
T Consensus       313 ~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        313 IYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            88888888777776 5799999999998888889999998888764

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.87  E-value=1.6e-07  Score=89.69  Aligned_cols=137  Identities=18%  Similarity=0.149  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc-----HHH--HHHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHHH
Q 018453           96 IGLITSGSLYGALIGSILAFNIADILGR-----RRE--LILAALLYLVGALVTAL---------APDFIIMVVGRFVFGI  159 (355)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-----r~~--~~~~~~l~~~~~~~~~~---------~~~~~~~~~~r~l~G~  159 (355)
                      .+++.+...+..++.+++..++..+.+|     +..  +.+|.++.+++.+..++         ..+++.++...++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            6788888888888888876654444443     232  36788888888877764         3588899999999999


Q ss_pred             HHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          160 GIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       160 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      |.....+....++.+..|++.||+++|++.....+|..+++.+........ +|...|...++.+++..++.++
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  466 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ-GVTGVFGKIGLVTLLVGVVMAL  466 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988776654 7888888777776665554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.87  E-value=1.3e-07  Score=83.66  Aligned_cols=133  Identities=32%  Similarity=0.524  Sum_probs=109.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhhHHhHHHHH
Q 018453           94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD--FIIMVVGRFVFGIGIGLAMHAAPMY  171 (355)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~r~l~G~~~g~~~~~~~~~  171 (355)
                      ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++..+..+  .+.+++.|++.|++.+...+....+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            47899999999999999999999999999998888887765666666666665  8889999999999999999999999


Q ss_pred             HHhhcCC-CchhHHHHHHHH-HHHHHHHHHHHHHHHhhcc-ccchhHHHHhHHHHHHH
Q 018453          172 IAETAPT-PMRGQLISLKEF-FIVLGMVGGYGIGSLLVDL-VAGWRYMYGASTPLAVI  226 (355)
Q Consensus       172 ~~e~~~~-~~r~~~~~~~~~-~~~~g~~~~~~i~~~l~~~-~~~w~~~~~~~~~~~~~  226 (355)
                      +.|+.|+ ++|+...+.... ...+|..+++.+++.+... ..+|+..|.+.......
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            9999998 678999998888 6888888988777766544 22788866665555443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.85  E-value=2.4e-07  Score=86.84  Aligned_cols=131  Identities=8%  Similarity=-0.017  Sum_probs=100.4

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHH
Q 018453           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP  169 (355)
Q Consensus        90 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  169 (355)
                      +.+....+...+.+..+..+|.++++++.||+++|+.+.+..++..+..++..+.++... ..+-++.|++.+..+|...
T Consensus       265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~  343 (410)
T TIGR00885       265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIY  343 (410)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHH
Confidence            445555566677777888999999999999999999998888888888888887766544 5667788888888999999


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cchhHHHHhHHHH
Q 018453          170 MYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-----AGWRYMYGASTPL  223 (355)
Q Consensus       170 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-----~~w~~~~~~~~~~  223 (355)
                      ....+..+++.+....++...  .+|+.+.|++.|.+.|..     ++.+..|++..++
T Consensus       344 sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~  400 (410)
T TIGR00885       344 GIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC  400 (410)
T ss_pred             HHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence            999999986654334443333  399999999999999843     2577777764443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.82  E-value=2.1e-06  Score=79.98  Aligned_cols=120  Identities=25%  Similarity=0.328  Sum_probs=100.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhHHh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAMH  166 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~  166 (355)
                      +|.++....+.......+.+++.++...+.+|+|+|+.+.++.++.+++.++.-+.+  +.+.+++..++.+++.+...+
T Consensus       267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~  346 (467)
T COG2211         267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP  346 (467)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence            455667777788888888888899999999999999999999999999999888765  678888889999999999988


Q ss_pred             HHHHHHHhhcC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018453          167 AAPMYIAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (355)
Q Consensus       167 ~~~~~~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  208 (355)
                      ...+.++|..+       .+.-|...+....+.-+|..++..+.+++.+
T Consensus       347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888776653       3445677888888888999999888888774

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.82  E-value=3.3e-07  Score=84.71  Aligned_cols=115  Identities=17%  Similarity=0.160  Sum_probs=83.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH---h-hhhHHHHHHHHHHHHHHHhhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA---L-APDFIIMVVGRFVFGIGIGLA  164 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~---~-~~~~~~~~~~r~l~G~~~g~~  164 (355)
                      +|.+..+.+++.+...++.+++.++.|++.||+|||+.+..+..+..+..+...   . ..+.+.+.++-.+.+.+.+..
T Consensus       225 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T PRK11102        225 NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMI  304 (377)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            688999999999999999999999999999999999998887766544333222   1 123444444554555555555


Q ss_pred             HhHHHHHHHhhcCCCchhHHHHHHHH-HHHHHHHHHHHHHH
Q 018453          165 MHAAPMYIAETAPTPMRGQLISLKEF-FIVLGMVGGYGIGS  204 (355)
Q Consensus       165 ~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~i~~  204 (355)
                      ......++.|..| +.+|.+.++... ...+|..++++++.
T Consensus       305 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        305 SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555667777766 789999988654 35677777777654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.81  E-value=5.4e-09  Score=89.24  Aligned_cols=121  Identities=21%  Similarity=0.239  Sum_probs=102.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTAL---APDFIIMVVGRFVFGIGIGLA  164 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~  164 (355)
                      .+++.++..++.+++..-..+-.+++|++.|| +|.|..-++-++...++-++.+.   .+.+|++.++||+.|+|.-..
T Consensus        74 ~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESl  153 (459)
T KOG4686|consen   74 SNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESL  153 (459)
T ss_pred             cccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhh
Confidence            67778888999999999999999999999986 68887766666666666665543   578999999999999998888


Q ss_pred             HhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018453          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (355)
Q Consensus       165 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  209 (355)
                      .+.-+.|..-|+..|+-+..+|+......+|+.+-..+.+++.+.
T Consensus       154 AVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  154 AVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             hhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence            888899999999999999999999999999998877777777654

>TIGR00788 fbt folate/biopterin transporter

Probab=98.81  E-value=1.1e-07  Score=90.44  Aligned_cols=147  Identities=15%  Similarity=0.134  Sum_probs=118.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA----------PDFIIMVVGRFVFG  158 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~r~l~G  158 (355)
                      +|.++.+.|++.....++.+++....+++.+|++.|+.+.++.++.+++.+.....          ++.+.++...++.+
T Consensus       283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~  362 (468)
T TIGR00788       283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE  362 (468)
T ss_pred             CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence            79999999999999999999999999999999999999999999998887554311          33344556678889


Q ss_pred             HHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccc-----hhHHHH---hHHHHHHHHHHH
Q 018453          159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG-----WRYMYG---ASTPLAVIMGMG  230 (355)
Q Consensus       159 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~-----w~~~~~---~~~~~~~~~~~~  230 (355)
                      ++.+........++.+..|++.+|+..++.+...++|..+++.+++.+.+.. |     ++..+.   ++.+..++.+..
T Consensus       363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~-g~~~~~~~~~~~~i~i~~~~~l~~l~~  441 (468)
T TIGR00788       363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI-GITCDNSNNLWLLILGHSLAPLLPLPL  441 (468)
T ss_pred             HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999888655 3     443333   333334444444


Q ss_pred             Hhhccc
Q 018453          231 MWWLPA  236 (355)
Q Consensus       231 ~~~~~e  236 (355)
                      .+++|+
T Consensus       442 ~~llP~  447 (468)
T TIGR00788       442 LHLLPR  447 (468)
T ss_pred             HHhCCC
Confidence            456776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=98.80  E-value=1.9e-07  Score=88.61  Aligned_cols=117  Identities=10%  Similarity=0.102  Sum_probs=78.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccHHHH-HHHHHHHHHHHHHHH-hh----hh--HHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL----GRRREL-ILAALLYLVGALVTA-LA----PD--FIIMVVGRFV  156 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----Grr~~~-~~~~~l~~~~~~~~~-~~----~~--~~~~~~~r~l  156 (355)
                      +|++..+.|.+.+...+..++..++.|+++||.    |||+.. +++.+...+..++.. ..    .+  ...+++..++
T Consensus        39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (448)
T PRK09848         39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG  118 (448)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence            699999999999999999999999999999996    777655 445554444433322 11    11  2233445567


Q ss_pred             HHHHHhhHHhHHHHHHHhhcC-CCchhHHHHHHHHHHH-----HHHHHHHHHHHH
Q 018453          157 FGIGIGLAMHAAPMYIAETAP-TPMRGQLISLKEFFIV-----LGMVGGYGIGSL  205 (355)
Q Consensus       157 ~G~~~g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~-----~g~~~~~~i~~~  205 (355)
                      .+++.+...+...+...+... +++|.+..+.-..+.+     +|..++|.+++.
T Consensus       119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848        119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            788888777777777777764 4678887666554433     445556655543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.80  E-value=3.8e-08  Score=92.76  Aligned_cols=175  Identities=12%  Similarity=0.046  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------H
Q 018453           54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR---------R  124 (355)
Q Consensus        54 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr---------r  124 (355)
                      +..+.++.+...+....+...+|.+.++      .+|.+..+.|++.++..+...+..++.|.++||.-+         |
T Consensus       260 vwai~~~~f~~~~~~~~l~~y~PtY~~~------VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk  333 (466)
T KOG2532|consen  260 VWAIWISAFGGNWGFYLLLTYLPTYLKE------VLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK  333 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHH------HhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH
Confidence            3445566666666777777888888883      389999999999999999999999999999998855         3


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018453          125 RELILAALLYLVGALVTALAPD-FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIG  203 (355)
Q Consensus       125 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  203 (355)
                      ..-.++....++..++.++.++ ...+.+.-+..+++..+........-.....+++-+..+|+.+....+.++++|.+.
T Consensus       334 ifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~v  413 (466)
T KOG2532|consen  334 IFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLV  413 (466)
T ss_pred             HHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhe
Confidence            3333455555666666666542 111111111222222222222222222221567889999999999999999999999


Q ss_pred             HHhhc--cccchhHHHHhHHHHHHHHHHHHhhc
Q 018453          204 SLLVD--LVAGWRYMYGASTPLAVIMGMGMWWL  234 (355)
Q Consensus       204 ~~l~~--~~~~w~~~~~~~~~~~~~~~~~~~~~  234 (355)
                      +.+..  ....|+++|++.+++.++..+.+.++
T Consensus       414 g~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  414 GIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             eeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            99984  23489999999999988876655443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.80  E-value=2.4e-07  Score=87.16  Aligned_cols=131  Identities=21%  Similarity=0.295  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HhhHHhHHHHHHHhhcCCC
Q 018453          102 GSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIG--IGLAMHAAPMYIAETAPTP  179 (355)
Q Consensus       102 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~--~g~~~~~~~~~~~e~~~~~  179 (355)
                      ...+..++..+..|.++||+|||..+.+..+...+..++..+.. +|.++    +.|+.  .+.......+++++....+
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence            44677889999999999999999999999999888888777755 44433    33332  3445677788999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHH-hhcccch
Q 018453          180 MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM-WWLPASP  238 (355)
Q Consensus       180 ~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~esp  238 (355)
                      +|....++.......+..++|.+++.+.... |.-..|.+..+..++..+.. +++||+-
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~-~~a~~f~ia~~~~~~~~~y~~~~l~Esl  203 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFL-GIALVFLIAAASGILSLLYMLLFLPESL  203 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhhcccccc
Confidence            9999999999999999999999999999886 88899999988888876654 5578874

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.79  E-value=4.4e-07  Score=87.20  Aligned_cols=136  Identities=12%  Similarity=0.062  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHhccHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHh
Q 018453           96 IGLITSGSLYGALIGSILA----FNIADILGRRRELILAALLYLVGALVTALAPD---------FIIMVVGRFVFGIGIG  162 (355)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~----g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~r~l~G~~~g  162 (355)
                      .+++.++..+..++..++.    +++.+|++.++.+.++.++.+++.++.++..+         .+.++..+++.|+|.+
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4566666666666666665    55556666668888999999999988776654         4578889999999999


Q ss_pred             hHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc---------cccchhHHHHhHHHHHHHHHHHH
Q 018453          163 LAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD---------LVAGWRYMYGASTPLAVIMGMGM  231 (355)
Q Consensus       163 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~---------~~~~w~~~~~~~~~~~~~~~~~~  231 (355)
                      ...+....++.+..|++.||+++|++.....+|..++..+......         ..+++.+.|...++++++..++.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~  475 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM  475 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888888888777653221         11146778877777766544333

>TIGR01272 gluP glucose/galactose transporter

Probab=98.78  E-value=2.1e-07  Score=83.79  Aligned_cols=92  Identities=17%  Similarity=0.184  Sum_probs=77.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc------------
Q 018453          143 LAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV------------  210 (355)
Q Consensus       143 ~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~------------  210 (355)
                      ...+++.++++-++.|.|.+...+..+.++.+..|++++++.+++.+.++++|.+++|.+++.+....            
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            45789999999999999999999999999999999999999999999999999999999999887321            


Q ss_pred             ---cchhHHHHhHHHHHHHHHHHHhhc
Q 018453          211 ---AGWRYMYGASTPLAVIMGMGMWWL  234 (355)
Q Consensus       211 ---~~w~~~~~~~~~~~~~~~~~~~~~  234 (355)
                         .+|++.|++.+.+.++..+.+.+.
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~  112 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFL  112 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence               268999987666655544444443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.77  E-value=2.9e-07  Score=85.62  Aligned_cols=149  Identities=21%  Similarity=0.172  Sum_probs=114.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----hccH-HHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRR-RELILAALLYLVGALVTALAPD------FIIMVVGRFVF  157 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~r~l~  157 (355)
                      +|++....|.+..+.=+.-++.-++.|.+.||    +||+ +.++++.+..++...++...++      ..-.++...+.
T Consensus        43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~  122 (467)
T COG2211          43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLL  122 (467)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHH
Confidence            79999999999999999999999999999995    7775 5555677777877777776653      33445667888


Q ss_pred             HHHHhhHHhHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc----c--ccchhHHHHhHHHHHHHHHHH
Q 018453          158 GIGIGLAMHAAPMYIAETA-PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD----L--VAGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       158 G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~----~--~~~w~~~~~~~~~~~~~~~~~  230 (355)
                      +++.......-.++..|+. .+++|.+..++-+.+..+|.++...+...+..    .  ..||+...++.+++.++..+.
T Consensus       123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~  202 (467)
T COG2211         123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF  202 (467)
T ss_pred             HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            8988888888888888887 46889999999999999998777666655552    1  237888888877777766555


Q ss_pred             Hhh-cccc
Q 018453          231 MWW-LPAS  237 (355)
Q Consensus       231 ~~~-~~es  237 (355)
                      .++ .+|.
T Consensus       203 ~~~~v~ER  210 (467)
T COG2211         203 CFFNVKER  210 (467)
T ss_pred             HHHHhhcc
Confidence            444 5554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.76  E-value=1.5e-06  Score=78.89  Aligned_cols=143  Identities=20%  Similarity=0.206  Sum_probs=120.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD-ILGRRRELILAALLYLVGALVTAL---APDFIIMVVGRFVFGIGIGLA  164 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~  164 (355)
                      +|++..+...+......|..++-...|++.. |.++++...+++.+..++..+..+   ..+.+.+...-++.|++.|..
T Consensus       239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f  318 (403)
T PF03209_consen  239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLF  318 (403)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHH
Confidence            8999999999999999999999999998876 678888877888887777665544   356888999999999999999


Q ss_pred             HhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc---------ccchhHHHHhHHHHHHHHHHHH
Q 018453          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL---------VAGWRYMYGASTPLAVIMGMGM  231 (355)
Q Consensus       165 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~---------~~~w~~~~~~~~~~~~~~~~~~  231 (355)
                      .......+.+...+++.|..+|.+...+.++..++..+++.+.|.         ..+|..+|.+.++..++++++.
T Consensus       319 ~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  319 TVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999887751         1257777777777766655443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK11462 putative transporter; Provisional

Probab=98.72  E-value=4e-06  Score=79.78  Aligned_cols=115  Identities=22%  Similarity=0.194  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhHHhHHHHH
Q 018453           94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAMHAAPMY  171 (355)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~  171 (355)
                      ...+.+...+.++.+++.++++++.||+|+|+.+..+..+.++..++..+.+  +...+++.-++.|++.+...+....+
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m  342 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677788888999999999999999999987755554444333333322  23334455566788777666666666


Q ss_pred             HHhhcC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018453          172 IAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (355)
Q Consensus       172 ~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  208 (355)
                      +.|..+       .+..|...+.......+|..+++.+++.+++
T Consensus       343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~  386 (460)
T PRK11462        343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA  386 (460)
T ss_pred             HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666654       3334555677778888999999988888774

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.71  E-value=3.6e-06  Score=78.37  Aligned_cols=120  Identities=15%  Similarity=0.089  Sum_probs=92.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHHHHHh--hhhHHHHHHHHHHHHHHHhhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL-VGALVTAL--APDFIIMVVGRFVFGIGIGLAM  165 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~-~~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~  165 (355)
                      +|.+..+.+++.....++..++..+.+++.||++++........+.. +.......  ..+.+.+.+..++.|++.+...
T Consensus       238 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  317 (394)
T PRK11652        238 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLF  317 (394)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            68888999999989999999999999999999984433322222222 22222222  2355667778899999999999


Q ss_pred             hHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018453          166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (355)
Q Consensus       166 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  209 (355)
                      +....+..|..| +++|...++.+....+|..+++.+++.+...
T Consensus       318 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        318 PLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            999999999887 5789999999999999999999999887654

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.70  E-value=4.1e-06  Score=82.38  Aligned_cols=145  Identities=16%  Similarity=0.236  Sum_probs=118.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAP--------DFIIMVVGRFVFGI  159 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~r~l~G~  159 (355)
                      +|++......+...+....-+..+++|+++|+ +|+++.++++.++..++.++.++..        .....+++-++..+
T Consensus        18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~   97 (654)
T TIGR00926        18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL   97 (654)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence            57888888888888888888999999999996 6999999999999999988877642        12345677788889


Q ss_pred             HHhhHHhHHHHHHHhhcCCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhccc------cchhHHHHhHHHHHHHHHHH
Q 018453          160 GIGLAMHAAPMYIAETAPTP---MRGQLISLKEFFIVLGMVGGYGIGSLLVDLV------AGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       160 ~~g~~~~~~~~~~~e~~~~~---~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~------~~w~~~~~~~~~~~~~~~~~  230 (355)
                      |.|+.-+...+...|.++++   +|-....++..+.++|+++++++..++.+..      .+|...|.+.++..++++++
T Consensus        98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926        98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence            99999999999999998754   3677888899999999999999998886332      26999999998888877665


Q ss_pred             Hhh
Q 018453          231 MWW  233 (355)
Q Consensus       231 ~~~  233 (355)
                      ...
T Consensus       178 f~~  180 (654)
T TIGR00926       178 FMA  180 (654)
T ss_pred             HHH
Confidence            544

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.69  E-value=1.3e-08  Score=92.48  Aligned_cols=177  Identities=15%  Similarity=-0.001  Sum_probs=122.4

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHH--------HHH-HHHHHHHHHHHHHHHHHHHhccHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGL--------ITS-GSLYGALIGSILAFNIADILGRRR  125 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--------~~~-~~~~~~~~~~~~~g~l~dr~Grr~  125 (355)
                      +..+..+|.+.+.....+.....+.+.       +++.+.....        ... +...+++.|-.+...+.|++|||+
T Consensus       307 lgt~~~WFllDiafy~~nL~~s~I~~~-------ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~  379 (538)
T KOG0252|consen  307 LGTAGTWFLLDIAFYGQNLFQSVIFSA-------IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKY  379 (538)
T ss_pred             HHHHHHHHhhhhhhhccccHHHHHHHh-------hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHH
Confidence            455666676666655555555555542       3332222111        111 122233345555667799999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHH-HHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 018453          126 ELILAALLYLVGALVTALAPDF----IIMVVGRFVFGI-GIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGY  200 (355)
Q Consensus       126 ~~~~~~~l~~~~~~~~~~~~~~----~~~~~~r~l~G~-~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~  200 (355)
                      +.+.+.+++++..+..+...|.    ..+++...+..+ +.-+.......+.+|.+|.+.|+++-|+.....-+|+++|.
T Consensus       380 iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~  459 (538)
T KOG0252|consen  380 IQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGA  459 (538)
T ss_pred             HHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHH
Confidence            9999999999999988886551    122222222222 22334455566778999999999999999999999999999


Q ss_pred             HHHHHhhc-----cccchhHHHHhHHHHHHHHHHHHhhcccchh
Q 018453          201 GIGSLLVD-----LVAGWRYMYGASTPLAVIMGMGMWWLPASPR  239 (355)
Q Consensus       201 ~i~~~l~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~  239 (355)
                      ..-.++.+     .. +.+++|++.++++++..+..+++||+..
T Consensus       460 ~~F~~~t~~~yp~~~-g~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  460 FGFLYLTDHNYPPNI-GVRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             HHhhHhhhccCCccc-cchHHHHHHHHHHHHhHheeEEeecccc
Confidence            99888887     54 8999999999999999998899998754

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.66  E-value=1.5e-06  Score=83.14  Aligned_cols=138  Identities=14%  Similarity=0.130  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHHHHHHHH-----hh-----hhHHHHHHHHHHHH
Q 018453           96 IGLITSGSLYGALIGSILAFNIADILGRRR-------ELILAALLYLVGALVTA-----LA-----PDFIIMVVGRFVFG  158 (355)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-------~~~~~~~l~~~~~~~~~-----~~-----~~~~~~~~~r~l~G  158 (355)
                      .+++.+...+..++..++.+++.||+|+|+       -+.+|.++.+++.+..+     ..     .+.+.++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            355666677778888889999999999986       36677777776664321     11     24677778899999


Q ss_pred             HHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc---------cccchhHHHHhHHHHHHHHHH
Q 018453          159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD---------LVAGWRYMYGASTPLAVIMGM  229 (355)
Q Consensus       159 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~---------~~~~w~~~~~~~~~~~~~~~~  229 (355)
                      +|.+...+....++.+..|++.+|.+++++.....+|..+|..++.....         ....+.+.|...++.++++.+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988865531         011356677766666665544


Q ss_pred             HHhh
Q 018453          230 GMWW  233 (355)
Q Consensus       230 ~~~~  233 (355)
                      ++++
T Consensus       471 ~~~~  474 (489)
T PRK10207        471 VMAL  474 (489)
T ss_pred             HHHH
Confidence            4433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.63  E-value=1.9e-05  Score=75.11  Aligned_cols=146  Identities=19%  Similarity=0.139  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHHHHHhh-h-hHHHHHHHHHHHHHHHhhHHhHHHH
Q 018453           94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL-YLVGALVTALA-P-DFIIMVVGRFVFGIGIGLAMHAAPM  170 (355)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l-~~~~~~~~~~~-~-~~~~~~~~r~l~G~~~g~~~~~~~~  170 (355)
                      +..++..++..+...+..++.|.++|+-|+||.++....+ .++.+.+..+. + +++...+..++.-++.+...+...+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456778888888899999999999999988777654444 44455555553 3 3555555666666788888899999


Q ss_pred             HHHhhcCCCch--------------------------hHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------chhHHH
Q 018453          171 YIAETAPTPMR--------------------------GQLISLKEFFIVLGMVGGYGIGSLLVDLVA-------GWRYMY  217 (355)
Q Consensus       171 ~~~e~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~-------~w~~~~  217 (355)
                      ++.|+.+++.+                          ++..+.-.....+|+++.-++...+....+       +.|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999999888                          899998888888888888777666543221       358888


Q ss_pred             HhHHHHHHHH-HHHHhhcccchh
Q 018453          218 GASTPLAVIM-GMGMWWLPASPR  239 (355)
Q Consensus       218 ~~~~~~~~~~-~~~~~~~~esp~  239 (355)
                      .+.++..++. ....+++|+.|+
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCC
Confidence            8877776554 444556777654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=9.3e-08  Score=85.62  Aligned_cols=158  Identities=18%  Similarity=0.126  Sum_probs=119.9

Q ss_pred             hhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHH
Q 018453           65 GYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG--RRRELILAALLYLVGALVTA  142 (355)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~l~~~~~~~~~  142 (355)
                      +...+..-+.++..+.+.      +..+.-+.|+..--..+.+.++..+.|.+.||++  |......++++.++......
T Consensus       283 n~~lafLePtlslwm~e~------m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP  356 (464)
T KOG3764|consen  283 NSSLAFLEPTLSLWMLET------MFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIP  356 (464)
T ss_pred             cchHHHhCcccHHHHHHh------ccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhH
Confidence            334444455555544321      3433336677777788899999999999999999  54444456666666777778


Q ss_pred             hhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCC------chhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHH
Q 018453          143 LAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP------MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM  216 (355)
Q Consensus       143 ~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~  216 (355)
                      +++++..+++-++..|++.+...........+....+      -.|...++...++++|.++||.+++.+.+.. |++|.
T Consensus       357 ~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i-GF~wl  435 (464)
T KOG3764|consen  357 FATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI-GFEWL  435 (464)
T ss_pred             hhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeeh-hHHHH
Confidence            8899999999999999988888777777666666443      3568889999999999999999999999998 99999


Q ss_pred             HHhHHHHHHHHHH
Q 018453          217 YGASTPLAVIMGM  229 (355)
Q Consensus       217 ~~~~~~~~~~~~~  229 (355)
                      ..+.++..++-..
T Consensus       436 ~~iig~~n~iyap  448 (464)
T KOG3764|consen  436 MTIIGILNLIYAP  448 (464)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988888776443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.59  E-value=5.3e-06  Score=75.36  Aligned_cols=126  Identities=16%  Similarity=0.198  Sum_probs=97.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cHHHHHH-HHHHHHHHHHHHHhh-----h-------h--HH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILG-----RRRELIL-AALLYLVGALVTALA-----P-------D--FI  148 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~-~~~l~~~~~~~~~~~-----~-------~--~~  148 (355)
                      +++...-.+...+...+... ..+..|..+|+.+     ||..+++ +.++...+..+..++     .       +  .+
T Consensus        10 L~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g   88 (403)
T PF03209_consen   10 LGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG   88 (403)
T ss_pred             hccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence            67887788887777766655 5889999999999     8866665 555555554444432     2       1  12


Q ss_pred             --HHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhH
Q 018453          149 --IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY  215 (355)
Q Consensus       149 --~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  215 (355)
                        ...++.++.|+|.+...+...+.+.|..|+++|++..++......+|.+++..+.+.+.+.+..-|.
T Consensus        89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL  157 (403)
T PF03209_consen   89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERL  157 (403)
T ss_pred             HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence              3345567899999999999999999999999999999999999999999999999999887633333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.53  E-value=3.4e-06  Score=81.28  Aligned_cols=147  Identities=20%  Similarity=0.258  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhHHhHHHHH
Q 018453           95 EIGLITSGSLYGALIGSILAFNIADILGR-RRELILAALLYLVGALVTAL--APDFIIMVVGRFVFGIGIGLAMHAAPMY  171 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~  171 (355)
                      ..++....+.++..++.++.|.+..+++| |+.++++.+++.++.-+++.  .+|....+..-++.|++.|.........
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            56788888899999999999999988877 45555666666544333333  2455556677889999999888887777


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-------------------------------------------
Q 018453          172 IAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD-------------------------------------------  208 (355)
Q Consensus       172 ~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~-------------------------------------------  208 (355)
                      ..-..|.++-|.+.++..+...+|+.+|..+...+..                                           
T Consensus       430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~i  509 (599)
T PF06609_consen  430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAI  509 (599)
T ss_pred             eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhC
Confidence            7777899999999999999999999988887655442                                           


Q ss_pred             ------------------cccchhHHHHhHHHHHHHHHHHHhhcccchhHH
Q 018453          209 ------------------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWL  241 (355)
Q Consensus       209 ------------------~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l  241 (355)
                                        ...++|++|+....+..++++..+++++..++.
T Consensus       510 PGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~m  560 (599)
T PF06609_consen  510 PGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKYM  560 (599)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhh
Confidence                              001588999999889889888888888765543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.50  E-value=6.2e-06  Score=74.43  Aligned_cols=157  Identities=13%  Similarity=0.088  Sum_probs=120.9

Q ss_pred             HHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 018453           60 GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL  139 (355)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~  139 (355)
                      +.|++--.....+..++.+..+      ..|.+..+.+...+.+..+.++|.+++.++..|+...|.+....++..+-++
T Consensus       244 ~~FlYVG~Eva~gsfl~~y~~~------~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~  317 (422)
T COG0738         244 AIFLYVGAEVAIGSFLVSYLEE------LLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLL  317 (422)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHh------cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            3344444455556666666653      1588999999999999999999999999999999999999998888888888


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHh
Q 018453          140 VTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGA  219 (355)
Q Consensus       140 ~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~  219 (355)
                      ..++.++...+ .+-++.|+..++.+|...+...+..| ++ ....+..-+...+|+++-|.+.|++.+.. +-...+.+
T Consensus       318 ~~~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~-g~~~~~~~  393 (422)
T COG0738         318 AVALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMF-GIQLTFLI  393 (422)
T ss_pred             HHHHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhh-hhHHHHHH
Confidence            88888885444 35677888899999999999999998 33 44455556667889999999999999887 66666653


Q ss_pred             HHHHHHH
Q 018453          220 STPLAVI  226 (355)
Q Consensus       220 ~~~~~~~  226 (355)
                      ...+|.+
T Consensus       394 ~pllc~l  400 (422)
T COG0738         394 VPLLCYL  400 (422)
T ss_pred             HHHHHHH
Confidence            3333333

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.50  E-value=1.6e-05  Score=75.38  Aligned_cols=141  Identities=13%  Similarity=0.021  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhhh---------------------HHHHHHHHH
Q 018453           98 LITSGSLYGALIGSILAFNIADILGR-RRELILAALLYLVGALVTALAPD---------------------FIIMVVGRF  155 (355)
Q Consensus        98 ~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~l~~~~~~~~~~~~~---------------------~~~~~~~r~  155 (355)
                      +....+.+...+.+++..++.+++|+ |+...++.++.+++.+...+.++                     .+..++...
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            44555556666888888999999995 67778888888888887765543                     367778888


Q ss_pred             HHHHHHhhHHhHHHHHHHhhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chhHHHHhHHHHHHHHHHHH-
Q 018453          156 VFGIGIGLAMHAAPMYIAETAPT--PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA-GWRYMYGASTPLAVIMGMGM-  231 (355)
Q Consensus       156 l~G~~~g~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~-~w~~~~~~~~~~~~~~~~~~-  231 (355)
                      +.|+..+..+.+-.+++++..++  ++.|..+|+++.+..+.+++..+..+.+.+..+ +-.+++.+.++..+++.+.. 
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999995  455999999999999999999988877554332 45677888888888766554 


Q ss_pred             hhcccch
Q 018453          232 WWLPASP  238 (355)
Q Consensus       232 ~~~~esp  238 (355)
                      +.+|+.+
T Consensus       469 ~~~~~~~  475 (477)
T TIGR01301       469 ILLPRPR  475 (477)
T ss_pred             HhCCCCC
Confidence            4467654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.47  E-value=5.1e-07  Score=83.00  Aligned_cols=106  Identities=21%  Similarity=0.187  Sum_probs=81.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh--h--hHHHHHHHHHHHHHHHhhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA--P--DFIIMVVGRFVFGIGIGLA  164 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~--~--~~~~~~~~r~l~G~~~g~~  164 (355)
                      +|.+..+.+++.+...++.+++.++.|++.||+|+|+.+..+..+...+..+..+.  .  +.+.+++...+.+++.|..
T Consensus       256 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  335 (366)
T TIGR00886       256 FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAG  335 (366)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccc
Confidence            68899999999999999999999999999999999988877776666665555432  2  5555555555566666666


Q ss_pred             HhHHHHHHHhhcCCCchhHHHHHHHHHHHHH
Q 018453          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLG  195 (355)
Q Consensus       165 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g  195 (355)
                      .+.....+.+..| +++|+.+|+.+....+|
T Consensus       336 ~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       336 NGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             cchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            6666777788877 68999999988877665

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.43  E-value=1.4e-05  Score=63.65  Aligned_cols=107  Identities=16%  Similarity=0.155  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCC
Q 018453          100 TSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP  179 (355)
Q Consensus       100 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~  179 (355)
                      .++.+....+++++.+.+.+++|.|+.++++.+...+-.... +-++.+.++.+-++.|++.+..++....++.+...++
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~  121 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE  121 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence            455666677888888999999999999999999888655543 4577889999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018453          180 MRGQLISLKEFFIVLGMVGGYGIGSLLV  207 (355)
Q Consensus       180 ~r~~~~~~~~~~~~~g~~~~~~i~~~l~  207 (355)
                      .|++..+++-.....+.++|.++...+.
T Consensus       122 ~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  122 TIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988876654

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PTZ00207 hypothetical protein; Provisional

Probab=98.41  E-value=7.4e-06  Score=79.29  Aligned_cols=141  Identities=9%  Similarity=-0.056  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc---------cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHH
Q 018453           99 ITSGSLYGALIGSILAFNIADILG---------RRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP  169 (355)
Q Consensus        99 ~~~~~~~~~~~~~~~~g~l~dr~G---------rr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  169 (355)
                      +++.+.++..+|.+.+|.+....-         |-..+.+..+ +.++.++.++.-....+.+.-++.|++.|..+++..
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~  474 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA  474 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence            788899999999999998872222         2223333444 556666665553336889999999999999999999


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHHHHHHHH-HHHHHHhhccc------------cchhHHHHhHHHHHHHHHHHHhhc-c
Q 018453          170 MYIAETAPTPMRGQLISLKEFFIVLGMVGG-YGIGSLLVDLV------------AGWRYMYGASTPLAVIMGMGMWWL-P  235 (355)
Q Consensus       170 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~-~~i~~~l~~~~------------~~w~~~~~~~~~~~~~~~~~~~~~-~  235 (355)
                      ..++|+|. |+-|+-..+......+|+.+- ..+.|.+.+..            .-++..|++.+.+++++.+....+ -
T Consensus       475 ~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~  553 (591)
T PTZ00207        475 LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHL  553 (591)
T ss_pred             HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheee
Confidence            99999999 999999999999999999887 45667666421            137899999999988877665443 3


Q ss_pred             cchhHH
Q 018453          236 ASPRWL  241 (355)
Q Consensus       236 esp~~l  241 (355)
                      ++.+++
T Consensus       554 R~r~~y  559 (591)
T PTZ00207        554 QYRRLC  559 (591)
T ss_pred             ehHHHH
Confidence            444444

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.40  E-value=2.1e-05  Score=75.97  Aligned_cols=141  Identities=16%  Similarity=0.137  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhH-------------HHHHH-HHHHHHHHHh
Q 018453           97 GLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF-------------IIMVV-GRFVFGIGIG  162 (355)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~-------------~~~~~-~r~l~G~~~g  162 (355)
                      .+...+..+...++..+...+.||+|||+.++.+...+.++.++.+.....             ..+.. +-++..+. .
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~-~  410 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFA-I  410 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHh-c
Confidence            455556666667777777899999999999999999999999877754211             11111 22222222 2


Q ss_pred             hHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHH--HHhhcccchh
Q 018453          163 LAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM--GMWWLPASPR  239 (355)
Q Consensus       163 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~--~~~~~~esp~  239 (355)
                      +..++...+.+|.+|.+.|+++.++....+.+...+-......+.... ++...|.+.+..+.+..+  ..+++||+..
T Consensus       411 g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~-~~~~~f~~f~~~~~~~~~~fv~~~~pETkg  488 (513)
T KOG0254|consen  411 GWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL-GIGGTFGYFGGICLLSLIIFVFFFVPETKG  488 (513)
T ss_pred             ccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHheEEcccCCC
Confidence            234555578899999999999999987777666655544433333332 235566655555555443  5566899843

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.33  E-value=2.4e-06  Score=59.97  Aligned_cols=80  Identities=23%  Similarity=0.241  Sum_probs=70.9

Q ss_pred             hhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Q 018453           64 YGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL  143 (355)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~  143 (355)
                      .|+......+.+|.+.++       .++|..+.+++.+.+++||.+|.+...++.++.++++.+..+.++.++..+.+++
T Consensus         4 mGigRFayTplLP~M~~~-------~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQAD-------GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             hhhHHHHHHhHhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            355666678899999887       7999999999999999999999999999999988899999999999999999998


Q ss_pred             hhhHHHH
Q 018453          144 APDFIIM  150 (355)
Q Consensus       144 ~~~~~~~  150 (355)
                      .++.+.+
T Consensus        77 ~~~~~~w   83 (85)
T PF06779_consen   77 THSFWLW   83 (85)
T ss_pred             HhchHHH
Confidence            8876654

Note that many members are hypothetical proteins.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.27  E-value=1.9e-09  Score=102.24  Aligned_cols=137  Identities=21%  Similarity=0.158  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--h--hhhH-----HHHHHHHHHHHHHHh-hHHhHHHHH
Q 018453          102 GSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA--L--APDF-----IIMVVGRFVFGIGIG-LAMHAAPMY  171 (355)
Q Consensus       102 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~--~--~~~~-----~~~~~~r~l~G~~~g-~~~~~~~~~  171 (355)
                      ...+...++.++...+.||+|||+.++.+..+.+++.+..+  .  ..+.     ...++.-.+..++.+ +..+....+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~  373 (451)
T PF00083_consen  294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIY  373 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccc
Confidence            34445556667777999999999999998888887777664  1  1111     111111222222222 344566688


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHH-HHHHHhhcccchh
Q 018453          172 IAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI-MGMGMWWLPASPR  239 (355)
Q Consensus       172 ~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~esp~  239 (355)
                      ..|.+|.+.|+++.++......++.++++.+...+.+.. +-...+++.++++++ ..+.++++|||..
T Consensus       374 ~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~i~~i~~~~~lpET~g  441 (451)
T PF00083_consen  374 TAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL-GGWGVFLIFAGVCLIAIIFVYFFLPETKG  441 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-cccccchhhHHHHHHHHhheeEEEeeCCC
Confidence            899999999999999999999999999988887777665 323444444444444 4455677899853

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.25  E-value=0.00017  Score=67.64  Aligned_cols=135  Identities=15%  Similarity=0.161  Sum_probs=88.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHhh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA-----LAPDFIIMVVGRFVFGIGIGL  163 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~r~l~G~~~g~  163 (355)
                      +|.+..+.++.......+..++..+.+.+.++.++++.+.....+..++.++..     ..++++.++++.++.|+|.+.
T Consensus       249 ~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~  328 (413)
T PRK15403        249 GGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGL  328 (413)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH
Confidence            688999999998888888888888888876554444443322222233322222     123343456788888998888


Q ss_pred             HHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHH
Q 018453          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (355)
Q Consensus       164 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~  226 (355)
                      ..+......- .-....+|++.++.......+..+++.+.+++.+.  +-+..|...++++.+
T Consensus       329 ~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~  388 (413)
T PRK15403        329 IFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN--GGRLPFHLLAVVAGV  388 (413)
T ss_pred             HhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHH
Confidence            8777765332 12233479999999998888899999998887655  345555554444333

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.23  E-value=0.0015  Score=61.76  Aligned_cols=116  Identities=6%  Similarity=-0.034  Sum_probs=84.8

Q ss_pred             ChhHHHHHHHHHHHHHHHH-HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh--h-----------------------
Q 018453           92 SSVEIGLITSGSLYGALIG-SILAFNIADILGRRRELILAALLYLVGALVTALA--P-----------------------  145 (355)
Q Consensus        92 s~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~--~-----------------------  145 (355)
                      +.+...++-+...+...+. .++.+++++|++|++.+.+......+..++.++.  +                       
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            3467788888777766666 8899999999999999887666666555555443  1                       


Q ss_pred             ------hHHHHHHHHHHHHHHHhhHHh-HHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018453          146 ------DFIIMVVGRFVFGIGIGLAMH-AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV  207 (355)
Q Consensus       146 ------~~~~~~~~r~l~G~~~g~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  207 (355)
                            +.|...+......+-...... .-..+.+|.++.++-.+..+++..+.++|.++++.+..++.
T Consensus       121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  122222333334443333444 66889999999999999999999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.21  E-value=0.00021  Score=69.27  Aligned_cols=133  Identities=21%  Similarity=0.162  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCch
Q 018453          105 YGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI---IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMR  181 (355)
Q Consensus       105 ~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r  181 (355)
                      .....+....+...|++|||.....+..+..++.++.++.....   ...+...+..++.+..+.....+..|.+|...|
T Consensus       361 ~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r  440 (521)
T KOG0255|consen  361 LVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVR  440 (521)
T ss_pred             HHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            35556666668899999999999999999999999998865432   355555666666677777779999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHH-HHHHHhhcccchh
Q 018453          182 GQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI-MGMGMWWLPASPR  239 (355)
Q Consensus       182 ~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~esp~  239 (355)
                      +.+.+...+...+|++++|.+..........+....  .+..+.+ +++..+++||+..
T Consensus       441 ~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~lpet~~  497 (521)
T KOG0255|consen  441 NTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL--FGWLALLLGLLSLLLLPETKG  497 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH--HHHHHHHHHHHHHhcCcccCC
Confidence            999999999999999999999865543221222222  3444444 4444577898754

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.20  E-value=3.6e-05  Score=72.58  Aligned_cols=144  Identities=27%  Similarity=0.221  Sum_probs=110.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILG-----RRRELILAALLYLVGALVTALAP----DFIIMVVGRFVFGI  159 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~r~l~G~  159 (355)
                      +|+++.+...+.+...+... ..++.|.++|-+.     ||.-++++.++..++.+..+..+    +.....+.-++..+
T Consensus        20 l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~   98 (433)
T PF03092_consen   20 LGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASF   98 (433)
T ss_pred             cCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence            89999999888877776664 4567789999863     55656667777766666555533    35566667788888


Q ss_pred             HHhhHHhHHHHHHHhhcC--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhc
Q 018453          160 GIGLAMHAAPMYIAETAP--TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (355)
Q Consensus       160 ~~g~~~~~~~~~~~e~~~--~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  234 (355)
                      |......+.-..+.|...  ++.||...+.......+|++++..++|.+.+.. +++..|.+.+++.++..+..+++
T Consensus        99 g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~~f~i~~~~~~l~~~~~~~~  174 (433)
T PF03092_consen   99 GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQGVFLISAALPLLMLIVALFL  174 (433)
T ss_pred             HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeEEehHHHHHHHHHHHHHHHh
Confidence            889899999999999872  233788899999999999999999999999887 89999988887766665544443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.16  E-value=0.0002  Score=67.59  Aligned_cols=119  Identities=17%  Similarity=0.201  Sum_probs=106.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAF-NIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      ++++..+.+.+.+...+...+++++.. .+...+|-|+.+..|+....+..++.+++++.|+++....+.++. +...+.
T Consensus       272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~~~pa  350 (463)
T KOG2816|consen  272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GIVFPA  350 (463)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cchhHH
Confidence            799999999888888888888888776 778889999999999999999999999999999998888777764 557888


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018453          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (355)
Q Consensus       168 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  208 (355)
                      ..++++.+..++++|+..++.....++..+++|.+-+.+..
T Consensus       351 ~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  351 IRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             HHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            89999999999999999999999999999999999887754

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.08  E-value=0.00026  Score=67.45  Aligned_cols=140  Identities=15%  Similarity=0.124  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--H-----HHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHH
Q 018453           95 EIGLITSGSLYGALIGSILAFNIADILGR--R-----RELILAALLYLVGALVTALA---------PDFIIMVVGRFVFG  158 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr--r-----~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~r~l~G  158 (355)
                      ..+|+.+...+..++.+++.+++-.|.+|  |     .=+.+++++.+++.++..++         .+.+.+++..++.+
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t  388 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG  388 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            35677888888888888888887666632  2     12567888888887666432         24567888899999


Q ss_pred             HHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHH-HHHHHHHHHHHHHHhhcc-----------ccchhHHHHhHHHHHHH
Q 018453          159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFF-IVLGMVGGYGIGSLLVDL-----------VAGWRYMYGASTPLAVI  226 (355)
Q Consensus       159 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~~~l~~~-----------~~~w~~~~~~~~~~~~~  226 (355)
                      +|.-+..|+..+.+++..|++.||+.+|++... ..+|..++..+++.....           ...+...|...++.+++
T Consensus       389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  468 (493)
T PRK15462        389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALA  468 (493)
T ss_pred             HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999764 467777777776655310           11355677766666554


Q ss_pred             H--HHHHhhc
Q 018453          227 M--GMGMWWL  234 (355)
Q Consensus       227 ~--~~~~~~~  234 (355)
                      .  ++++.++
T Consensus       469 ~~~~~~~~~~  478 (493)
T PRK15462        469 CVGVVLMIWL  478 (493)
T ss_pred             HHHHHHHHHH
Confidence            4  3344444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.05  E-value=6.2e-05  Score=67.54  Aligned_cols=120  Identities=16%  Similarity=0.184  Sum_probs=107.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILG--RRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMH  166 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  166 (355)
                      +|+++.+.|-+.+...+++.+.+.......+|..  .+..+..++.+..-..++.+.++....+..+-.+..++.+...+
T Consensus       292 fg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt  371 (451)
T KOG2615|consen  292 FGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVT  371 (451)
T ss_pred             cCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhH
Confidence            8999999999999999999999998888888887  67777777777777777778888888889999999999999999


Q ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018453          167 AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (355)
Q Consensus       167 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  208 (355)
                      .....+....|.++||..+|+.....+++-++||+++|.+..
T Consensus       372 ~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  372 CLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            999999999999999999999999999999999999987763

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.98  E-value=4.8e-05  Score=52.87  Aligned_cols=65  Identities=20%  Similarity=0.240  Sum_probs=53.0

Q ss_pred             HHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 018453           62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL  133 (355)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l  133 (355)
                      +.+....+...|.++.+.++       .|++..+.|.+.++..+...++.+++|.++||+++++.++....+
T Consensus        10 f~~f~~~g~~~Pfl~~~~~~-------~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   10 FFYFAALGCLYPFLPLYLKQ-------LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHhhhhHhhhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            33344455566677777765       799999999999999999999999999999999999887765554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.97  E-value=8.7e-05  Score=70.57  Aligned_cols=160  Identities=14%  Similarity=-0.040  Sum_probs=101.3

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----hccHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRRRELILA  130 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~~~~  130 (355)
                      ...+++.++...........+|.+..+      -.|++..+.+.+.+.+.++.+++.++.|.++||    +.+|..+...
T Consensus       276 w~~~l~~~~~~lv~~~~~~~lpl~l~~------~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~  349 (495)
T KOG2533|consen  276 WPFSLCYFFLKLVNYGFSYWLPLYLKS------NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVF  349 (495)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHc------CCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            444566666666777777788888774      146899999999999999999999999999999    6777776666


Q ss_pred             HHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCch-hHHHHHHHHHHHHHHHHHHHHHHHhh-
Q 018453          131 ALLYLVGA-LVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMR-GQLISLKEFFIVLGMVGGYGIGSLLV-  207 (355)
Q Consensus       131 ~~l~~~~~-~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r-~~~~~~~~~~~~~g~~~~~~i~~~l~-  207 (355)
                      ..+..+.. +......+......+-+..+.+.+...+......++....+.| -...+....+.+.++.+++.+-.... 
T Consensus       350 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~a  429 (495)
T KOG2533|consen  350 LCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDA  429 (495)
T ss_pred             HHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccC
Confidence            65555444 4443333333333333444455566667777777777655443 34444455555555555444433222 


Q ss_pred             ccccchhHHHHhHH
Q 018453          208 DLVAGWRYMYGAST  221 (355)
Q Consensus       208 ~~~~~w~~~~~~~~  221 (355)
                      ..+ +|...|....
T Consensus       430 p~y-~~~~~f~~~~  442 (495)
T KOG2533|consen  430 PRY-GWGAVFYMLV  442 (495)
T ss_pred             cch-hhhhHHHHHH
Confidence            223 6777774433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.94  E-value=4.9e-05  Score=69.73  Aligned_cols=118  Identities=24%  Similarity=0.352  Sum_probs=89.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----hccHHHHHH-HHHHHHHHHHHHHhhhhH----------------
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRRRELIL-AALLYLVGALVTALAPDF----------------  147 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~~~-~~~l~~~~~~~~~~~~~~----------------  147 (355)
                      +|++..+.+.+.-.--+...+.+++.|..+||    |||||.++. +..+..++.++..++.++                
T Consensus        62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra  141 (498)
T KOG0637|consen   62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA  141 (498)
T ss_pred             cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence            68888888888888888999999999999995    788776665 555566777777765542                


Q ss_pred             -HHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhH-HHHHHHHHHHHHHHHHHHHHHHh
Q 018453          148 -IIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQ-LISLKEFFIVLGMVGGYGIGSLL  206 (355)
Q Consensus       148 -~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~-~~~~~~~~~~~g~~~~~~i~~~l  206 (355)
                       ..++++.-+.-++.......+-+++.|....+++.+ +++++..+.++|+++|-.++++.
T Consensus       142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence             223333344445565677888889999987666666 99999999999999998887744

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.91  E-value=0.0014  Score=59.88  Aligned_cols=147  Identities=12%  Similarity=0.027  Sum_probs=100.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHhhHHhH
Q 018453           92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL-AALLYLVGALVTALAPD---FIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        92 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~l~~~~~~~~~~~~~---~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      +.+.++...++..+...+..++.|.++|+.|+||..+. ...+.+++.++..+.++   ++..++...+..++.....+.
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            34667788888888888999999999999997766554 44455555556666544   455556778888888888899


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh--c---------------cccchhHHHHhHHHHHHHHHHH
Q 018453          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV--D---------------LVAGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       168 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~--~---------------~~~~w~~~~~~~~~~~~~~~~~  230 (355)
                      -.+++.+..++++-++..++-....-+|+++.-++.....  .               ....-|.++.+.++..++..+.
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP  215 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP  215 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence            9999999999988888777766556666655544431111  1               1125677888777776665443


Q ss_pred             -Hhhcccch
Q 018453          231 -MWWLPASP  238 (355)
Q Consensus       231 -~~~~~esp  238 (355)
                       ++..++.+
T Consensus       216 m~~~v~~~~  224 (438)
T COG2270         216 MILNVHDAE  224 (438)
T ss_pred             HHhcccccc
Confidence             44455544

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.87  E-value=0.00012  Score=67.74  Aligned_cols=109  Identities=15%  Similarity=0.246  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhh--h-h------HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCC---chhHHHHHHHHHH
Q 018453          125 RELILAALLYLVGALVTALA--P-D------FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP---MRGQLISLKEFFI  192 (355)
Q Consensus       125 ~~~~~~~~l~~~~~~~~~~~--~-~------~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~---~r~~~~~~~~~~~  192 (355)
                      ++++++.++..+|.++..++  + .      ...++++.++.++|.|+.-+....+++|.++++   +|.....+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56788888888888884443  2 1      357888999999999999999999999999765   4677888899999


Q ss_pred             HHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhc
Q 018453          193 VLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (355)
Q Consensus       193 ~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  234 (355)
                      ++|..++..+.+++.++. +|.+.|.++++..+++++.++.-
T Consensus        82 n~G~~~~~~~~~~i~~~~-~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNY-GWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhcccc-chhhhhhHHHHHHHHHHHHHHhC
Confidence            999999999999998887 99999999998888877665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK03612 spermidine synthase; Provisional

Probab=97.85  E-value=0.0046  Score=59.64  Aligned_cols=118  Identities=17%  Similarity=0.127  Sum_probs=74.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---HHHHHhhhh----H-HHHHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVG---ALVTALAPD----F-IIMVVGRFVFGIG  160 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~---~~~~~~~~~----~-~~~~~~r~l~G~~  160 (355)
                      +|.+...++.+.++++.|..+|+.+++++.++.-++ ...+-..+..++   ..+......    . ..++...++.|+.
T Consensus        45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l  123 (521)
T PRK03612         45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG-FVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLL  123 (521)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577888999999999999999999998876433222 222221111111   111111111    1 2223444567788


Q ss_pred             HhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018453          161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (355)
Q Consensus       161 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  208 (355)
                      .|+..|....+..+.. .++-|...|-.+....+|+++|.++.+++.-
T Consensus       124 ~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        124 IGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            8888777776665432 2234677888889999999999999887664

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.82  E-value=0.00041  Score=63.75  Aligned_cols=111  Identities=21%  Similarity=0.095  Sum_probs=82.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHH---HHHhhhhHHHHHHHHHHHHHHHhhHHh
Q 018453           92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL--VGAL---VTALAPDFIIMVVGRFVFGIGIGLAMH  166 (355)
Q Consensus        92 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~--~~~~---~~~~~~~~~~~~~~r~l~G~~~g~~~~  166 (355)
                      ...++.+....+.+|-.++.--...+  |+  |+..+.+.+-.+  +..+   +.-+.++.|.+++.-+..|+..|..++
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            35677888888888877776543322  33  333333322222  2222   223357889998999999999999999


Q ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018453          167 AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL  206 (355)
Q Consensus       167 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  206 (355)
                      -....+.|-.|+++|-.+++....+.++|.+++.+++-.+
T Consensus       355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998887665

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.78  E-value=0.00054  Score=63.01  Aligned_cols=136  Identities=15%  Similarity=0.075  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhh
Q 018453           96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAET  175 (355)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~  175 (355)
                      .+.+.-+-.+-.++..+...++.+|+..+.-+.+..+++.+++++.+++++.+.-+++-.+.+++.|........+.. .
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~  139 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F  139 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence            455566666777888888999999998777778888899999999999999998889999999999988777777644 5


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh-ccc
Q 018453          176 APTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPA  236 (355)
Q Consensus       176 ~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~e  236 (355)
                      +++    ..++-+..+.+.++++|+..-..+...-.+.|..+.+..++.++..+.+++ +|.
T Consensus       140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             cCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            553    357788888888888888876655542125577887777766655544444 443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.68  E-value=0.0025  Score=60.22  Aligned_cols=149  Identities=17%  Similarity=0.206  Sum_probs=109.7

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHH
Q 018453           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA----------PDFIIMVVGRFVFGI  159 (355)
Q Consensus        90 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~r~l~G~  159 (355)
                      |.++...+.+..+..++.++|..+...+..+..-|+++.++.++.++..+.....          ++.+..+.--++..+
T Consensus       251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~  330 (433)
T PF03092_consen  251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV  330 (433)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence            4889999999988888999999998888888888888888887777666543221          122223334456666


Q ss_pred             HHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------chhHHHHhHHHHHHHHHHHHh
Q 018453          160 GIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA-------GWRYMYGASTPLAVIMGMGMW  232 (355)
Q Consensus       160 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~-------~w~~~~~~~~~~~~~~~~~~~  232 (355)
                      ..+..+-.....++|..|+..-|+..++.....++|..++..++..+.+..+       +-.+..+++.++.++.+....
T Consensus       331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~  410 (433)
T PF03092_consen  331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF  410 (433)
T ss_pred             HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            6676777778889999999999999999999999999999999988875331       233455566666655666666


Q ss_pred             hcccch
Q 018453          233 WLPASP  238 (355)
Q Consensus       233 ~~~esp  238 (355)
                      ++|+..
T Consensus       411 lLp~~~  416 (433)
T PF03092_consen  411 LLPPQK  416 (433)
T ss_pred             HcCCCc
Confidence            677654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.51  E-value=0.0039  Score=58.34  Aligned_cols=137  Identities=16%  Similarity=0.175  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHH
Q 018453           94 VEIGLITSGSLYGALIGSILAFNIADILGRR-------RELILAALLYLVGALVTALA----------PDFIIMVVGRFV  156 (355)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~r~l  156 (355)
                      -..++..+...+.-++.+++..++-.+.+++       .-+-+++.+.+.+.++....          .+.+.++...++
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l  403 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL  403 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            3457788888999999998888888775543       33456666666666655443          246888899999


Q ss_pred             HHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHh------hccccchhHHHHhHHHHHHHHHHH
Q 018453          157 FGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL------VDLVAGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       157 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l------~~~~~~w~~~~~~~~~~~~~~~~~  230 (355)
                      +++|.=+..++...++....|+...+.+++++......|..++..+++.-      .+.. .....|+..+...++..+.
T Consensus       404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~-~~~~~F~~~g~v~i~~~~~  482 (498)
T COG3104         404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAF-IEGRVFGTIGVVAIVIGIL  482 (498)
T ss_pred             HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhh-hhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988888888887777631      1222 4556677766666655444


Q ss_pred             H
Q 018453          231 M  231 (355)
Q Consensus       231 ~  231 (355)
                      .
T Consensus       483 ~  483 (498)
T COG3104         483 L  483 (498)
T ss_pred             H
Confidence            3

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.0041  Score=58.33  Aligned_cols=107  Identities=16%  Similarity=0.124  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCC
Q 018453          100 TSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP  179 (355)
Q Consensus       100 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~  179 (355)
                      .++.+..+.+.+++.+.+.|+.|.|+.+.++........+...+ .|-+-+++.-++.|+|.+..+..-..|+.|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            67788888999999999999999999999999998877776655 56778888999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018453          180 MRGQLISLKEFFIVLGMVGGYGIGSLLV  207 (355)
Q Consensus       180 ~r~~~~~~~~~~~~~g~~~~~~i~~~l~  207 (355)
                      .+.+..++.-.....+.++|..+...+.
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~  162 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYF  162 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence            9999999998888888888877655443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.40  E-value=0.004  Score=58.64  Aligned_cols=133  Identities=15%  Similarity=0.037  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-----h---hhHHHHHHHHHHHHHHHhhHHhHHHHHHH
Q 018453          102 GSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL-----A---PDFIIMVVGRFVFGIGIGLAMHAAPMYIA  173 (355)
Q Consensus       102 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~-----~---~~~~~~~~~r~l~G~~~g~~~~~~~~~~~  173 (355)
                      ...+...+..+....+..|+..|.-+..++++..+..++...     .   ..++..++.-++.|++.+........+.+
T Consensus        53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~  132 (437)
T TIGR00939        53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG  132 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence            344444444444555556666544445554433332222211     1   13556666777888888888877777665


Q ss_pred             hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHh---h-ccc-cchh--HHHHhHHHHHHHHHHHHhhcccchh
Q 018453          174 ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL---V-DLV-AGWR--YMYGASTPLAVIMGMGMWWLPASPR  239 (355)
Q Consensus       174 e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l---~-~~~-~~w~--~~~~~~~~~~~~~~~~~~~~~esp~  239 (355)
                       .+|++    .+..+..+.+++++++.++.-..   . +.. ..++  ..|.+.+++.+++++..+.+++.|.
T Consensus       133 -~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~  200 (437)
T TIGR00939       133 -VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLPKLPF  200 (437)
T ss_pred             -cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCHH
Confidence             45644    34555556666666555543221   1 110 0122  2333444445555555566666654

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.39  E-value=0.12  Score=48.47  Aligned_cols=118  Identities=13%  Similarity=0.052  Sum_probs=84.7

Q ss_pred             ChhHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhh---------h---------------
Q 018453           92 SSVEIGLITSGSLY-GALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP---------D---------------  146 (355)
Q Consensus        92 s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~---------~---------------  146 (355)
                      +++...++=+..-+ ++.+..++.+++++++.+.+++-+.........+++++.-         +               
T Consensus        59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l  138 (509)
T COG3202          59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL  138 (509)
T ss_pred             cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence            45666777666666 7788888999999999999998877777666666665520         1               


Q ss_pred             --------HHHHHHHHHHHHHHHhhHHh-HHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018453          147 --------FIIMVVGRFVFGIGIGLAMH-AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (355)
Q Consensus       147 --------~~~~~~~r~l~G~~~g~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  209 (355)
                              .|...+...+.-+-...... .-..+..|....++-.+..++++.+.+++..++..+..++...
T Consensus       139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                    13333333333332333333 4467789999999999999999999999999999999888753

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.037  Score=52.06  Aligned_cols=109  Identities=19%  Similarity=0.291  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHhhh------------------hHHHHHHHH
Q 018453           96 IGLITSGSLYGALIGSILAFNIA---DILGRRRELILAALLYLVGALVTALAP------------------DFIIMVVGR  154 (355)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~---dr~Grr~~~~~~~~l~~~~~~~~~~~~------------------~~~~~~~~r  154 (355)
                      .+...-...+|..+++.+.+.++   +++||++.+.++.++..++.++.-...                  ++...++.-
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence            34444445555566666666666   457889988888888877777665421                  355777788


Q ss_pred             HHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018453          155 FVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL  205 (355)
Q Consensus       155 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  205 (355)
                      ++.|++-++..+....++.... +++|..+.+++-.-..++..++-.....
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999999999999 5778999998888777777776555443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.36  E-value=0.001  Score=59.07  Aligned_cols=230  Identities=17%  Similarity=0.144  Sum_probs=146.0

Q ss_pred             ccCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSVEIG-LITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      .+++..+.. =+.-...-.+.+.-++.=.+.|-..-|++++.-.+..+...++..+.++.+.+=+.-++.|...+ ...+
T Consensus        36 ~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIA  114 (433)
T KOG3810|consen   36 KNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIA  114 (433)
T ss_pred             CCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHh
Confidence            466655432 22223344556666677789999999999988877777778888888999988888999999776 5666


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchhHHHHhHHHHHHHHHHHHhhcccchhHHHHhhc
Q 018453          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAM  246 (355)
Q Consensus       168 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~  246 (355)
                      -++|+.+..+++++.+..+..-...-.|-..|..++..++... .++...=.+......++.+..+++|..++-+.-+.+
T Consensus       115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~  194 (433)
T KOG3810|consen  115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRL  194 (433)
T ss_pred             hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcc
Confidence            7889999999999999999999999999999988888877543 144444455555556666667777776544333221


Q ss_pred             cccCchhhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcccchhHHHHHHHHHHHHhhhhhhH
Q 018453          247 KRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPS  326 (355)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (355)
                      ..+           ....    +.++...+....+..       ..-...+..=+..-..++.++...+++....+|.+-
T Consensus       195 ~~~-----------~~v~----~~e~~~~~~~~~~~l-------~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~Q  252 (433)
T KOG3810|consen  195 EDK-----------ISVG----DLEEMNPQASYMSYL-------RGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQ  252 (433)
T ss_pred             ccc-----------ceec----cchhcCccchhhHHH-------HHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHH
Confidence            100           0000    000000000000000       000111111122223446666777888889999999


Q ss_pred             HHHhHHHHHHHhccc
Q 018453          327 VLYYAASILQDFLQP  341 (355)
Q Consensus       327 ~~~~~~~~~~~~~~~  341 (355)
                      +..|.-...++..++
T Consensus       253 V~nY~Q~LW~~~~~~  267 (433)
T KOG3810|consen  253 VTNYTQILWKEVAPN  267 (433)
T ss_pred             HHHHHHHHHHhhCCC
Confidence            999988887776443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.14  E-value=0.01  Score=57.73  Aligned_cols=144  Identities=15%  Similarity=0.139  Sum_probs=109.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhhh---------------------
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAPD---------------------  146 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~~---------------------  146 (355)
                      ++.+...+.-..+.+.--.....+.++.++|-| ||-+.+.++.++..++.++..+...                     
T Consensus        68 ~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~  147 (571)
T KOG1237|consen   68 LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESP  147 (571)
T ss_pred             hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCc
Confidence            677667777777777777778888999999975 8888888888888877655443211                     


Q ss_pred             ----HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcC---C-Cc--hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHH
Q 018453          147 ----FIIMVVGRFVFGIGIGLAMHAAPMYIAETAP---T-PM--RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM  216 (355)
Q Consensus       147 ----~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~---~-~~--r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~  216 (355)
                          ...++.+..+..+|.|+.-+....+-+|-++   + +.  +...+.++....++|..++..+..++-++. +|.+.
T Consensus       148 s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lg  226 (571)
T KOG1237|consen  148 SKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLG  226 (571)
T ss_pred             chHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceee
Confidence                2355666677778899999999999999987   3 22  236788889999999999999888887776 99999


Q ss_pred             HHhHHHHHHHHHHHHhh
Q 018453          217 YGASTPLAVIMGMGMWW  233 (355)
Q Consensus       217 ~~~~~~~~~~~~~~~~~  233 (355)
                      |.+..++.++++++++.
T Consensus       227 f~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  227 FGIPTVLNALAILIFLP  243 (571)
T ss_pred             ccHHHHHHHHHHHHHHc
Confidence            99988887776655443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.01  E-value=0.022  Score=53.33  Aligned_cols=117  Identities=16%  Similarity=0.142  Sum_probs=88.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh---h---h----hHHHHHHHHHHHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL---A---P----DFIIMVVGRFVFG  158 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~---~---~----~~~~~~~~r~l~G  158 (355)
                      -|+++...|..-+.-.+..+.+.....++.+|+|..+.-+++.....++..++..   .   +    +...++.+-.+.-
T Consensus       288 ~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR  367 (432)
T PF06963_consen  288 QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSR  367 (432)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHH
Confidence            5999999999999999999999999999999999988877776655444433322   1   1    2344445555555


Q ss_pred             HHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018453          159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL  205 (355)
Q Consensus       159 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  205 (355)
                      +|.=+.--...-++.|..|+++||...|.-....++--++...+.-.
T Consensus       368 ~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii  414 (432)
T PF06963_consen  368 IGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTII  414 (432)
T ss_pred             HHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            65555666777889999999999999999988888877776665443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.00  E-value=0.0016  Score=59.96  Aligned_cols=147  Identities=17%  Similarity=0.055  Sum_probs=93.4

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHH-hh---hhHHHHHHHHHHHHHHHhhH
Q 018453           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGR-RRELILAALLYLVGALVTA-LA---PDFIIMVVGRFVFGIGIGLA  164 (355)
Q Consensus        90 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~l~~~~~~~~~-~~---~~~~~~~~~r~l~G~~~g~~  164 (355)
                      |++....|++.....++.++++.+.|.+.||... |...++......++.+... +.   .+.+.++..-.+.|.+..+.
T Consensus       297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~  376 (480)
T KOG2563|consen  297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGY  376 (480)
T ss_pred             cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCC
Confidence            5566788999999999999999999999999865 5555555555555532222 21   12344555566778877778


Q ss_pred             HhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc--chhH-HHHhHHHHHHHHHHHHhhccc
Q 018453          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA--GWRY-MYGASTPLAVIMGMGMWWLPA  236 (355)
Q Consensus       165 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~--~w~~-~~~~~~~~~~~~~~~~~~~~e  236 (355)
                      .|...-+-.|..-|..-+...|+......+-+++-..+.+...+..+  +|.. .-+.....+++..++..++++
T Consensus       377 ~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~  451 (480)
T KOG2563|consen  377 LPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP  451 (480)
T ss_pred             CCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence            88877777787655555677777766666556666666666665542  2333 333334444444444445443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.95  E-value=0.31  Score=45.85  Aligned_cols=132  Identities=6%  Similarity=-0.119  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh------h--h----hHHHH---HHHHHHHHHH
Q 018453           96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL------A--P----DFIIM---VVGRFVFGIG  160 (355)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~------~--~----~~~~~---~~~r~l~G~~  160 (355)
                      .+...-.-.+..++.++..|.+.||..|.+.+-.+.+..-++..+.+.      .  .    +.+..   ++.-.+.|..
T Consensus        40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i  119 (432)
T PF06963_consen   40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAI  119 (432)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH
Confidence            344444555677788888999999999988877666554433332221      1  1    11111   2222222221


Q ss_pred             HhhHHhHHHH--HHHhh----c--CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHH
Q 018453          161 IGLAMHAAPM--YIAET----A--PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM  229 (355)
Q Consensus       161 ~g~~~~~~~~--~~~e~----~--~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~  229 (355)
                      .- .......  .=-||    .  +++...+.++...-.--+.-+++|++.|.+.+.. +.+....+.++..++.++
T Consensus       120 ~~-Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~-s~~~~~~~i~~~N~~S~~  194 (432)
T PF06963_consen  120 ER-LASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA-SPVIAAIFIAGWNLASVF  194 (432)
T ss_pred             HH-HHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHH
Confidence            11 1111111  11223    2  3455667777777788888999999999998876 788777777766666544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.90  E-value=0.0027  Score=54.59  Aligned_cols=84  Identities=24%  Similarity=0.463  Sum_probs=64.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL---APDFIIMVVGRFVFGIGIGLAM  165 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~  165 (355)
                      |+....++|.+...-.-..++.+.+.|.+.|+-|||+.    ++...+..+++..   ++.+..++++|.+-|+..+..+
T Consensus        67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKra----cvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLF  142 (454)
T KOG4332|consen   67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA----CVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLF  142 (454)
T ss_pred             cCccCCccceeeecccchHHHHHHHHHHHHhhhccccc----eeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHH
Confidence            77788888887777777778888889999999999995    4444444554444   4668899999999999999888


Q ss_pred             hHHHHH-HHhhc
Q 018453          166 HAAPMY-IAETA  176 (355)
Q Consensus       166 ~~~~~~-~~e~~  176 (355)
                      ...-++ +.|.-
T Consensus       143 SaFEsWliaEHn  154 (454)
T KOG4332|consen  143 SAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHHhh
Confidence            887775 45544

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.86  E-value=0.46  Score=45.47  Aligned_cols=117  Identities=11%  Similarity=0.055  Sum_probs=77.9

Q ss_pred             ChhHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh--h-----------------------
Q 018453           92 SSVEIGLITSGSLY-GALIGSILAFNIADILGRRRELILAALLYLVGALVTALA--P-----------------------  145 (355)
Q Consensus        92 s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~--~-----------------------  145 (355)
                      +.+...++-....+ +.++...+..+++++++|.+.+-+..........+.++.  +                       
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            44555555443333 556667788999999999998877666655555544442  1                       


Q ss_pred             ------hHHHHHHHHHHHHHHHhhHHh-HHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018453          146 ------DFIIMVVGRFVFGIGIGLAMH-AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (355)
Q Consensus       146 ------~~~~~~~~r~l~G~~~g~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  208 (355)
                            +.|...+...+.-+-.....+ .-..+.+|.++.++-.+..+++..+.++|.+++..+...+..
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  112222222222222222223 457789999999999999999999999999999998888776

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.71  E-value=0.088  Score=48.45  Aligned_cols=87  Identities=10%  Similarity=0.026  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH----HHhhccccchhHHHHhHHH
Q 018453          147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIG----SLLVDLVAGWRYMYGASTP  222 (355)
Q Consensus       147 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~----~~l~~~~~~w~~~~~~~~~  222 (355)
                      +...++.-.+.+++.|..........++ +|++.-...+    .+.++++++..++.    ....+...+-..-|.+..+
T Consensus       117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm----~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~  191 (406)
T KOG1479|consen  117 FLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVM----SGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTV  191 (406)
T ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHH----hcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHH
Confidence            5555666677788877777776666554 5655543333    33333333333322    2222222233445556666


Q ss_pred             HHHHHHHHHhhcccch
Q 018453          223 LAVIMGMGMWWLPASP  238 (355)
Q Consensus       223 ~~~~~~~~~~~~~esp  238 (355)
                      +.+++++....+|+.|
T Consensus       192 ~~llC~i~y~~l~~lp  207 (406)
T KOG1479|consen  192 ILLLCFVLYLVLPKLP  207 (406)
T ss_pred             HHHHHHHHHHHhhcch
Confidence            6666666666667665

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.64  E-value=0.093  Score=47.69  Aligned_cols=138  Identities=14%  Similarity=0.076  Sum_probs=87.6

Q ss_pred             HHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccHHHHHH-HHH
Q 018453           59 LGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD-----ILGRRRELIL-AAL  132 (355)
Q Consensus        59 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~~~  132 (355)
                      +-+...|.-.+... .+|.+.+.       -|.|.++.+....++.=  ..-.+++..+.|     |+||||.-++ +..
T Consensus        38 ~LYllQGiP~GL~~-~iP~lL~a-------k~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvvp~q~  107 (510)
T KOG3574|consen   38 FLYLLQGIPLGLIG-AIPLLLQA-------KGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQY  107 (510)
T ss_pred             HHHHHcCCchhHhh-hhHHHhcC-------CCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence            33456666666666 77777774       47777776665444321  223446666777     9999987554 333


Q ss_pred             HHHHHHHHHHhh-----------hhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 018453          133 LYLVGALVTALA-----------PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYG  201 (355)
Q Consensus       133 l~~~~~~~~~~~-----------~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~  201 (355)
                      +.+..+++.+..           ++...+....++.-+..+.--.++-.+.-.+..+++.|.+......+...|.+++..
T Consensus       108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~  187 (510)
T KOG3574|consen  108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV  187 (510)
T ss_pred             HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence            333333333321           233344445566667777777777778888888999999988888888888888776


Q ss_pred             HHHHh
Q 018453          202 IGSLL  206 (355)
Q Consensus       202 i~~~l  206 (355)
                      +--.+
T Consensus       188 ifLaL  192 (510)
T KOG3574|consen  188 VFLAL  192 (510)
T ss_pred             eeeEe
Confidence            64433

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.62  E-value=0.051  Score=51.11  Aligned_cols=146  Identities=12%  Similarity=0.009  Sum_probs=78.7

Q ss_pred             HHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHH--HHHHHHHHH-HHHHHHHHhccHHHHHHH-HH
Q 018453           57 PALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGS--LYGALIGSI-LAFNIADILGRRRELILA-AL  132 (355)
Q Consensus        57 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~~-~~g~l~dr~Grr~~~~~~-~~  132 (355)
                      +.+-++..|.-.+......|.+.++..     .+.|.++.+.+.-+.  +--=++.++ +=.....|+||||.-++- -.
T Consensus         5 L~~LY~lQGiP~GL~~gsiPflL~~~~-----~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~   79 (544)
T PF13000_consen    5 LVLLYFLQGIPLGLAFGSIPFLLQSMA-----KKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQY   79 (544)
T ss_pred             HHHHHHHcCcccccccccchhhhcccc-----CCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHH
Confidence            344456667777666556777766311     266777766553321  111123333 233446689999876652 23


Q ss_pred             HHHHHHHHHHhhh------------------------hHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHH
Q 018453          133 LYLVGALVTALAP------------------------DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLK  188 (355)
Q Consensus       133 l~~~~~~~~~~~~------------------------~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~  188 (355)
                      +.++.++..+...                        +...+....++.=+-.+.--.++-.+.-.+..+++++.+....
T Consensus        80 l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcq  159 (544)
T PF13000_consen   80 LSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQ  159 (544)
T ss_pred             HHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHH
Confidence            3333333332211                        0112222232333334444445555666677888899888888


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 018453          189 EFFIVLGMVGGYGIGSLLV  207 (355)
Q Consensus       189 ~~~~~~g~~~~~~i~~~l~  207 (355)
                      ..+.++|.+++..+--.+.
T Consensus       160 tvG~~~Gyfls~tvFlaln  178 (544)
T PF13000_consen  160 TVGQTAGYFLSFTVFLALN  178 (544)
T ss_pred             HhHhhhhHHHHHHHHHhhC
Confidence            8888888887766655444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.30  E-value=0.21  Score=47.24  Aligned_cols=109  Identities=14%  Similarity=0.095  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHH--HHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHHHHhh
Q 018453           97 GLITSGSLYGALIGSILAFNIADILGRR--RELI--LAALLYLVGALVTALA---------PDFIIMVVGRFVFGIGIGL  163 (355)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~--~~~~l~~~~~~~~~~~---------~~~~~~~~~r~l~G~~~g~  163 (355)
                      -.....+++|-.+|..+..+.. .-++|  ..++  +.-++.+...+++..-         ++-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            4557778888888888554431 11222  2222  2223333333333221         3455666779999999999


Q ss_pred             HHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018453          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL  206 (355)
Q Consensus       164 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  206 (355)
                      ..+....+..+..++++|..+..+...+..+|..+|..++-.+
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988876543

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.38  E-value=0.0043  Score=60.13  Aligned_cols=150  Identities=15%  Similarity=0.223  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHhc--cHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLY-GALIGSILAFNIADILG--RRRELILAA  131 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~~~~~~  131 (355)
                      +...++.....+........+|.+.+.+      |++++++++++..+..+ +.++|.+++|++..|+.  .|..+.+..
T Consensus       308 ~~~~la~~~~~~~~~G~~tF~pKylE~Q------F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~  381 (539)
T PF03137_consen  308 MCLILAGVFESFIVSGFATFLPKYLESQ------FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCI  381 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHH
Confidence            4555666666667777788899988842      89999999988876665 66889999999999874  344444444


Q ss_pred             HHHHHHHHHH---Hh--hh-------------------------------------------------hHHHHHHHHHHH
Q 018453          132 LLYLVGALVT---AL--AP-------------------------------------------------DFIIMVVGRFVF  157 (355)
Q Consensus       132 ~l~~~~~~~~---~~--~~-------------------------------------------------~~~~~~~~r~l~  157 (355)
                      +...++.++.   .+  ++                                                 .+..+++..++.
T Consensus       382 v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~  461 (539)
T PF03137_consen  382 VVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFIL  461 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHH
Confidence            4443333321   11  00                                                 012222333333


Q ss_pred             HHHHhhHHhHHHHHHHhhcCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhhccc
Q 018453          158 GIGIGLAMHAAPMYIAETAPTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLV  210 (355)
Q Consensus       158 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~l~~~~  210 (355)
                      -+..+...+.....+-.-.|+++|+.++|+.. ....+|.+-||++-|.++|..
T Consensus       462 ~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  462 SFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            33334444444555667788889999999875 445567788888888877653

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.36  E-value=0.011  Score=55.75  Aligned_cols=77  Identities=21%  Similarity=0.227  Sum_probs=59.0

Q ss_pred             HHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHH
Q 018453           61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL-AALLYLVGAL  139 (355)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~l~~~~~~  139 (355)
                      ++.++...+.+.+.++.+...       +|+++.+.|.++..--+..+++.+++|.++||+.+|+.+++ +.++.+...+
T Consensus        20 ~~~~~~~~g~l~pll~vy~kQ-------LGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f   92 (618)
T KOG3762|consen   20 YLFFGARFGSLFPLLAVYFKQ-------LGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF   92 (618)
T ss_pred             eeeeeecccccchHHHHHHHH-------cCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            344455556666667766665       89999999999999999999999999999999988766665 4555556666


Q ss_pred             HHHhh
Q 018453          140 VTALA  144 (355)
Q Consensus       140 ~~~~~  144 (355)
                      +..+.
T Consensus        93 ll~fv   97 (618)
T KOG3762|consen   93 LLVFV   97 (618)
T ss_pred             heeec
Confidence            55554

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=95.32  E-value=0.018  Score=53.43  Aligned_cols=125  Identities=19%  Similarity=0.193  Sum_probs=72.1

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------HHHHHHHHHHH----HHHHHHHHhhh-hHHHHHHHHHHH
Q 018453           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGR-------RRELILAALLY----LVGALVTALAP-DFIIMVVGRFVF  157 (355)
Q Consensus        90 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-------r~~~~~~~~l~----~~~~~~~~~~~-~~~~~~~~r~l~  157 (355)
                      |.+.....++..+...+..+|.+++|.++||+-|       .+.=.+...+.    +...++....+ ....+.+..++.
T Consensus       279 ~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~  358 (493)
T KOG1330|consen  279 GFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLV  358 (493)
T ss_pred             CCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3345555677788888889999999999999432       11111111111    11111222122 222333344555


Q ss_pred             HHHHhhH-HhHHHHHHHhhcCCCchhHHHHHHHHHH-HHHHHHHHHHHHHhhccccchh
Q 018453          158 GIGIGLA-MHAAPMYIAETAPTPMRGQLISLKEFFI-VLGMVGGYGIGSLLVDLVAGWR  214 (355)
Q Consensus       158 G~~~g~~-~~~~~~~~~e~~~~~~r~~~~~~~~~~~-~~g~~~~~~i~~~l~~~~~~w~  214 (355)
                      |...... .........|..|+++|..+.++..... .+|.+-+|.+.|.+.+..-+|+
T Consensus       359 g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  359 GETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            5543332 3344456688889999999999975544 4455555557787776655666

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=94.83  E-value=0.045  Score=51.73  Aligned_cols=73  Identities=16%  Similarity=0.143  Sum_probs=58.3

Q ss_pred             HHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHH
Q 018453          155 FVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMG  228 (355)
Q Consensus       155 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~  228 (355)
                      ++.|++.-.......+.-+|...+++.+.+.++++....++.++||++...+.... |.|+...+.+...++..
T Consensus       396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~-g~~~v~~~~~~~~l~~~  468 (488)
T KOG2325|consen  396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS-GPRPVWIILLCLLLVVA  468 (488)
T ss_pred             heeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc-CccHHHHHHHHHHHHHH
Confidence            45666655556667788899999999999999999999999999999998888776 88877776665554433

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.66  E-value=0.51  Score=43.54  Aligned_cols=131  Identities=18%  Similarity=0.045  Sum_probs=85.6

Q ss_pred             ccccccccCCCCCCCccccCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-------h
Q 018453           72 SCATISIESPTLSGISWYDLSSVEIGLITSG-SLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA-------L  143 (355)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~-------~  143 (355)
                      -.+.|.+..+...+.   ..++...-++... ++++..+|.+...++.++=.|+..+....=+..+..+..+       +
T Consensus       263 LsiFPg~~~~~~~~~---~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~  339 (406)
T KOG1479|consen  263 LSIFPGFCSEVKSSG---LLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVV  339 (406)
T ss_pred             eEecchhhcccccCc---ccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCce
Confidence            334555555432211   1133344455566 8889999977777665544444333333333333333322       2


Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018453          144 APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL  205 (355)
Q Consensus       144 ~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  205 (355)
                      -.+-+.+++...+.|+..|-...+.+.+..+-.|++++-.+..+.......|.+.|..++..
T Consensus       340 ~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l  401 (406)
T KOG1479|consen  340 FESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV  401 (406)
T ss_pred             ecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            34567778889999999999999999999999999998888888888888888888777543

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=94.13  E-value=0.017  Score=51.92  Aligned_cols=108  Identities=21%  Similarity=0.197  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHH--HHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHhhH
Q 018453           98 LITSGSLYGALIGSILAFNIADI-LGRRRELIL--AALLYLVGALVTAL----------APDFIIMVVGRFVFGIGIGLA  164 (355)
Q Consensus        98 ~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~--~~~l~~~~~~~~~~----------~~~~~~~~~~r~l~G~~~g~~  164 (355)
                      .....++++-.+|..+.++..=+ -.+|+..+.  .-++.+...+++-.          .++-+..++..++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            34567889999999987764211 123433332  22222222222211          233455667789999999999


Q ss_pred             HhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018453          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL  205 (355)
Q Consensus       165 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  205 (355)
                      .+....+..+..++++|..+..+...+..+|..+|..++-.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             -HHHH------------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888888988888877644

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=94.07  E-value=2.5  Score=38.25  Aligned_cols=85  Identities=21%  Similarity=0.262  Sum_probs=57.6

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HH-Hhh----hhHHHHHHHHHHHHHH
Q 018453           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL----VT-ALA----PDFIIMVVGRFVFGIG  160 (355)
Q Consensus        90 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~----~~-~~~----~~~~~~~~~r~l~G~~  160 (355)
                      |-+-.+.+++.+.+...+.+|+...-++.|.--.-+.+.+-.++..++.+    +. .|+    +..+.+.++-+++|.-
T Consensus        39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L  118 (508)
T COG4262          39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL  118 (508)
T ss_pred             CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            55567888999999999999988887776654444333333333222211    11 222    3567788889999999


Q ss_pred             HhhHHhHHHHHHHh
Q 018453          161 IGLAMHAAPMYIAE  174 (355)
Q Consensus       161 ~g~~~~~~~~~~~e  174 (355)
                      .|...|..+.++..
T Consensus       119 VG~EiPL~mrml~~  132 (508)
T COG4262         119 VGAEIPLLMRMLQR  132 (508)
T ss_pred             HhcchHHHHHHHHH
Confidence            99999999888876

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.56  E-value=0.14  Score=47.77  Aligned_cols=129  Identities=16%  Similarity=-0.022  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcC
Q 018453           98 LITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAP  177 (355)
Q Consensus        98 ~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~  177 (355)
                      |-..++.+...+.+....++++|+|-|+.++.+.....++.-+.+..++.+.....+...|+-.+....+-...+.++.-
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~  415 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI  415 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence            44566777888889999999999997777777776677777777777887777788877775555443333333332221


Q ss_pred             -----------------------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHH
Q 018453          178 -----------------------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (355)
Q Consensus       178 -----------------------~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~  226 (355)
                                             ..-+|...|+.++...+..++.....|.+.+..++-+......++++++
T Consensus       416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~  487 (498)
T KOG0637|consen  416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALL  487 (498)
T ss_pred             hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHH
Confidence                                   1123555666677777777777776677776665666665555555444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.53  E-value=2.9  Score=38.94  Aligned_cols=97  Identities=19%  Similarity=0.156  Sum_probs=70.2

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHH
Q 018453           92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL--AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP  169 (355)
Q Consensus        92 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  169 (355)
                      ....-|.+-++..+.+.++.+..|.+..++.+..-+.+  ..++.+...++++..+|+|...++.++.+.......+.+.
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~  362 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS  362 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455777788888888899999998777776544443  3344455555667788999999999998888888888888


Q ss_pred             HHHHhhcCCCchhHHHHHH
Q 018453          170 MYIAETAPTPMRGQLISLK  188 (355)
Q Consensus       170 ~~~~e~~~~~~r~~~~~~~  188 (355)
                      .-++.....+..|...|+.
T Consensus       363 ~qIA~~l~~e~yaLVFGiN  381 (412)
T PF01770_consen  363 FQIAKNLSEERYALVFGIN  381 (412)
T ss_pred             HHHHHhccccceeeeeeeH
Confidence            7777777766666555543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=92.88  E-value=1  Score=40.32  Aligned_cols=104  Identities=18%  Similarity=0.253  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcC--CCc
Q 018453          103 SLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAP--TPM  180 (355)
Q Consensus       103 ~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~--~~~  180 (355)
                      ..+..+..+++.+.+..++|.|+++.++..........- +-+.+..++.+-.+.|++.+..+..-..|+.+...  .+.
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~  145 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ  145 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence            334455666666689999999999887766654433211 22567888889999999999887776666655542  223


Q ss_pred             h---------hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018453          181 R---------GQLISLKEFFIVLGMVGGYGIGSLLV  207 (355)
Q Consensus       181 r---------~~~~~~~~~~~~~g~~~~~~i~~~l~  207 (355)
                      |         .+..+.+.+++..+...|..++..+.
T Consensus       146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~  181 (390)
T KOG3097|consen  146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIM  181 (390)
T ss_pred             hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            3         45566666666666666655554443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=92.79  E-value=0.19  Score=49.93  Aligned_cols=65  Identities=15%  Similarity=0.082  Sum_probs=48.4

Q ss_pred             ccccccccccCCCCCCCccccCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHH
Q 018453           70 STSCATISIESPTLSGISWYDLSSVEIGLITSGSLY-GALIGSILAFNIADILG--RRRELILAALLYLVGALV  140 (355)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~~~~~~~l~~~~~~~  140 (355)
                      .....+|.+.++      .+|++..+.+++.+...+ +.+++.+++|++.||++  .|+.+.++.++.+++.++
T Consensus       348 ~~~~~lP~yl~~------~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       348 GYITFLPKYLEN------QYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHH------HcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            344466666652      279999999999988776 67899999999999998  456666666666666544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.25  E-value=7.2  Score=34.18  Aligned_cols=135  Identities=14%  Similarity=0.160  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHh----hh---hHHHHHHHHHHHHHHHhhHH
Q 018453           95 EIGLITSGSLYGALIGSILAFNIADILGRR--RELILAALLYLVGALVTAL----AP---DFIIMVVGRFVFGIGIGLAM  165 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~l~~~~~~~~~~----~~---~~~~~~~~r~l~G~~~g~~~  165 (355)
                      -.|.+.+.+++..++|+-+..++..|-..|  ....+..++.+....+...    ++   +...-+++..+.-.+.|..+
T Consensus       283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw  362 (454)
T KOG4332|consen  283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW  362 (454)
T ss_pred             CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence            347889999999999999888887765543  3333333333333222221    12   23333566677778899999


Q ss_pred             hHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHH
Q 018453          166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG  230 (355)
Q Consensus       166 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~  230 (355)
                      |..+-.-.+..|.+.|...+.++-.-.++-..++-... ..-+...+-|..|-++.+...++.+.
T Consensus       363 PSimkmRsqyIPEearstimNfFRvPLnifvClvLynl-h~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNL-HVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheec-ccccCccccchhhhhhHHHHHHHHHH
Confidence            99999999999999999998887655444332221110 00112225678888888776665443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=91.03  E-value=15  Score=35.17  Aligned_cols=73  Identities=11%  Similarity=0.072  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhhHHhHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHH
Q 018453          153 GRFVFGIGIGLAMHAAPMYIAETAPT-PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (355)
Q Consensus       153 ~r~l~G~~~g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~  226 (355)
                      .-++.|++........-..+.+.+|. ++|+..+|.++...++..++..++.+.+.... ||.....+.-++.++
T Consensus       272 ~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~-Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       272 LVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKY-GWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            33456666666676666777888764 56899999999998888878888888888887 999887765555444

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=88.66  E-value=5.2  Score=34.70  Aligned_cols=103  Identities=11%  Similarity=0.028  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHH----HHHHHHHHHHHHHHh-hh----hHHHHHHHHHHHHHHHhhHHh
Q 018453           97 GLITSGSLYGALIGSILAFNIADI-LGRRRELI----LAALLYLVGALVTAL-AP----DFIIMVVGRFVFGIGIGLAMH  166 (355)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~----~~~~l~~~~~~~~~~-~~----~~~~~~~~r~l~G~~~g~~~~  166 (355)
                      .....++..|..+|....|.+... +.||+.+.    .+.++.++..++... ..    +...+++.-++.|++.=+..+
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            455566677777887888877754 55565544    233334444433211 11    355667777788876555555


Q ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 018453          167 AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGY  200 (355)
Q Consensus       167 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~  200 (355)
                      +....-.|. +...+.+..-.+...+++|.++-.
T Consensus       224 ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY~~yT  256 (267)
T PF07672_consen  224 VILNLPHEY-KGYNPKKIGIQFGLIWGFGYIFYT  256 (267)
T ss_pred             HHhcChhhh-cCCCcceehhHHHHHHHHHHHHHH
Confidence            544444443 222222333334555555554433

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.11  E-value=3.7  Score=29.98  Aligned_cols=26  Identities=8%  Similarity=-0.045  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018453           96 IGLITSGSLYGALIGSILAFNIADIL  121 (355)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~dr~  121 (355)
                      .++-.+.-+++.++.....||+.|+|
T Consensus        44 ~a~klssefIsGilVGa~iG~llD~~   69 (116)
T COG5336          44 QAFKLSSEFISGILVGAGIGWLLDKF   69 (116)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445666777777777889999997

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=85.24  E-value=7.6  Score=29.07  Aligned_cols=40  Identities=35%  Similarity=0.627  Sum_probs=24.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 018453           94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL  133 (355)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l  133 (355)
                      ...+.......++..++..+.+.+.|..|.+..+.+...+
T Consensus        87 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (141)
T TIGR00880        87 VALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAIL  126 (141)
T ss_pred             HHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHH
Confidence            3445555666667777777777777766665554444333

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=85.24  E-value=37  Score=32.73  Aligned_cols=72  Identities=13%  Similarity=0.091  Sum_probs=51.9

Q ss_pred             HHHHHHHHHhhHHhHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHH
Q 018453          153 GRFVFGIGIGLAMHAAPMYIAETAPT-PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV  225 (355)
Q Consensus       153 ~r~l~G~~~g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~  225 (355)
                      .-+..|++........-..+.+.+|. +.+...+|-++...++-..+...+++.+.... ||+....+.=++++
T Consensus       288 lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~-GW~~~AlitPiv~l  360 (491)
T PF03219_consen  288 LVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRF-GWRTAALITPIVIL  360 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhHHHHH
Confidence            33456666666666666677777754 55788888888888888888888888888887 99987776433333

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=84.34  E-value=13  Score=35.63  Aligned_cols=62  Identities=15%  Similarity=0.131  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018453          149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV  210 (355)
Q Consensus       149 ~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  210 (355)
                      .+++..++..+..-..++..+++-+.+.+|..=|+.|.+.++..++|+-.-..+.-++++..
T Consensus       407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence            44456677778888889999999999999999999999999999998766666655555544

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=84.24  E-value=6  Score=35.36  Aligned_cols=111  Identities=13%  Similarity=-0.008  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHH
Q 018453           94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELIL---AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPM  170 (355)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~  170 (355)
                      .|+-|....+.+|-.+..--...+.-+  .-+.+.+   -.++..+.-.+..+.++++..++.-+.-|+-.|..++-..-
T Consensus       288 sqYRwyqvlYQlGVFiSRSS~~~~~~p--~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~  365 (409)
T KOG3880|consen  288 SQYRWYQVLYQLGVFISRSSINLFTMP--YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFH  365 (409)
T ss_pred             hcchhhheeeeeeEEEEeccceEEech--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHH
Confidence            456788888777765544322211111  1111111   11122222233445688898888999999988888888888


Q ss_pred             HHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018453          171 YIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL  206 (355)
Q Consensus       171 ~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  206 (355)
                      -+.+-.++++|-.+++.......+|..++..++-.+
T Consensus       366 ~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  366 NIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            888888899999999999999999999988876544

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=83.68  E-value=0.8  Score=40.61  Aligned_cols=133  Identities=12%  Similarity=0.027  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhh
Q 018453           96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAET  175 (355)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~  175 (355)
                      .|.+.-+-.+-..+..+....+.||+.--.-+.+..++.+.++++.+++++.++-+.+-.+..++.|.....-..+. ..
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~ls-s~  142 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALS-SR  142 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhh-cc
Confidence            45555566677778888888899987554445667778888888889999999988888888888886655544332 22


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchhHHHHhHHHHHHHHHHHHhh
Q 018453          176 APTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD-LVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       176 ~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~-~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      +++    ...+.+..+.+.++++|..--..+.+ ...+.|.++++...+.++.....++
T Consensus       143 Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~  197 (409)
T KOG3880|consen  143 YPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFF  197 (409)
T ss_pred             CCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHh
Confidence            332    22344444444455555443333333 1126788888777666655544444

>PRK10263 DNA translocase FtsK; Provisional

Probab=83.02  E-value=44  Score=35.99  Aligned_cols=26  Identities=23%  Similarity=-0.091  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHhhccccchhHHHHhH
Q 018453          194 LGMVGGYGIGSLLVDLVAGWRYMYGAS  220 (355)
Q Consensus       194 ~g~~~~~~i~~~l~~~~~~w~~~~~~~  220 (355)
                      .|+++|.+++..+.... |.....++.
T Consensus       142 gGGIIG~lLs~lL~~Lf-G~vGa~LIL  167 (1355)
T PRK10263        142 SGGVIGSLLSTTLQPLL-HSSGGTIAL  167 (1355)
T ss_pred             ccchHHHHHHHHHHHHH-hHHHHHHHH
Confidence            46666666666555444 444444333

>TIGR00806 rfc RFC reduced folate carrier

Probab=82.35  E-value=8.4  Score=36.85  Aligned_cols=93  Identities=14%  Similarity=0.113  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHh
Q 018453           97 GLITSGSLYGALIGSILAFNIADILGRRRELI--LAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAE  174 (355)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e  174 (355)
                      |.+-++..+...+..+..|++-.++.+---+.  +..++.+...++++..+|+|..+++.++.+.......+++..-++.
T Consensus       301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~  380 (511)
T TIGR00806       301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS  380 (511)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666677778888888876665432333  3444444555566777899999999999999999999999999998


Q ss_pred             hcCCCchhHHHHHHH
Q 018453          175 TAPTPMRGQLISLKE  189 (355)
Q Consensus       175 ~~~~~~r~~~~~~~~  189 (355)
                      ....+..|...|+..
T Consensus       381 ~L~~~~~aLvFGiNt  395 (511)
T TIGR00806       381 SLSKELCALVFGINT  395 (511)
T ss_pred             HhcccceEEEEecHH
Confidence            888777776666643

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=82.25  E-value=1.8  Score=37.50  Aligned_cols=56  Identities=13%  Similarity=0.064  Sum_probs=35.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHh---h-ccccchhHHHHhHHHHHHHHHHHHhhc
Q 018453          179 PMRGQLISLKEFFIVLGMVGGYGIGSLL---V-DLVAGWRYMYGASTPLAVIMGMGMWWL  234 (355)
Q Consensus       179 ~~r~~~~~~~~~~~~~g~~~~~~i~~~l---~-~~~~~w~~~~~~~~~~~~~~~~~~~~~  234 (355)
                      |+|+....+...++++|.++....-..-   . ....+|++++.+.+++.++.++++.++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566666666777788877665442211   0 111279999998888877766665554

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=80.66  E-value=62  Score=31.94  Aligned_cols=83  Identities=13%  Similarity=0.147  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHhhh-----------------hHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHH
Q 018453          127 LILAALLYLVGALVTALAP-----------------DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKE  189 (355)
Q Consensus       127 ~~~~~~l~~~~~~~~~~~~-----------------~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~  189 (355)
                      +-+|+++.++.+...+...                 +.++++--.++.|++.....+...-+..+-+|++.|+.+.+++.
T Consensus       421 ig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l  500 (571)
T KOG1237|consen  421 IGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWL  500 (571)
T ss_pred             eeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHH
Confidence            3466777777766665521                 24566677789999999998888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q 018453          190 FFIVLGMVGGYGIGSLLVDL  209 (355)
Q Consensus       190 ~~~~~g~~~~~~i~~~l~~~  209 (355)
                      ...++|..+...+.......
T Consensus       501 ~t~a~G~~lss~Lv~~v~~~  520 (571)
T KOG1237|consen  501 LTVAVGNYLSSVLVSLVQFS  520 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999988665543

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=80.56  E-value=33  Score=28.70  Aligned_cols=39  Identities=23%  Similarity=0.119  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHH
Q 018453          100 TSGSLYGALIGSILAFNIA---DILGRRRELILAALLYLVGA  138 (355)
Q Consensus       100 ~~~~~~~~~~~~~~~g~l~---dr~Grr~~~~~~~~l~~~~~  138 (355)
                      .....+++++|..+.+.+.   ++..+|+.....+.+..+..
T Consensus        52 ~~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll   93 (209)
T PF06912_consen   52 YLLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILL   93 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence            3444455566666666662   23334444444444433333

The function of this family is unknown although a few members are thought to be membrane proteins.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=80.31  E-value=0.54  Score=42.26  Aligned_cols=79  Identities=11%  Similarity=-0.053  Sum_probs=0.0

Q ss_pred             HHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH---hhccccchh--HHHHhHHHHHHHHHH
Q 018453          155 FVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL---LVDLVAGWR--YMYGASTPLAVIMGM  229 (355)
Q Consensus       155 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~---l~~~~~~w~--~~~~~~~~~~~~~~~  229 (355)
                      ++.|++.+........+.+. +|++.    +..+..+.++++++..++.-.   ..+.. .+.  ..|.+..++.+++++
T Consensus         5 ~~~~~~~~~~q~s~~glas~-~p~~y----~~a~~~Gq~~aGv~~s~l~ii~~~~~~~~-~~~a~~yF~~a~~i~i~~~~   78 (309)
T PF01733_consen    5 ALIGFANAVLQSSLFGLASL-FPPKY----TQAVMIGQGLAGVIVSLLRIITKASGSDV-KTSAFIYFIIAVLIVILCII   78 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEHhhhHHHhccHHHHHhc-CCHHH----HHHHHhhccHHHHHHHHHHHHHHHhhhcc-chhhhhHHHHHHHHHHHHHH
Confidence            45566666666666666664 56544    334445555555554443321   11111 122  233334444444555


Q ss_pred             HHhhcccchh
Q 018453          230 GMWWLPASPR  239 (355)
Q Consensus       230 ~~~~~~esp~  239 (355)
                      .++.++.+|.
T Consensus        79 ~~~~l~~~~~   88 (309)
T PF01733_consen   79 LYFILPRSPF   88 (309)
T ss_dssp             ----------
T ss_pred             HHHHhccChH
Confidence            5555666553

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	355
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		6e-14

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 24/181 (13%)
Query: 163 LAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD-------LVAGWRY 215
           LA   +PMYIAE AP  +RG+L+S  +F I+ G +  Y +   +            GWRY
Sbjct: 142 LASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201
Query: 216 MYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSA 275
           M+ +    A++  M ++ +P SPRWL+      +G     +E A   L ++ G ++   A
Sbjct: 202 MFASECIPALLFLMLLYTVPESPRWLM-----SRGK----QEQAEGILRKIMGNTLATQA 252
Query: 276 PTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL 335
             E+   L         ++   R +  G  +  ++IG  L +FQQ  G   VLYYA  + 
Sbjct: 253 VQEIKHSLD------HGRKTGGRLLMFG--VGVIVIGVMLSIFQQFVGINVVLYYAPEVF 304
Query: 336 Q 336
           +
Sbjct: 305 K 305

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	2e-06
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	3e-05
2cfq_A	417	Lactose permease; transport, transport mechanism,	6e-04

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 89  YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV---TALAP 145
           + L++ + GLI S   +G  I  I A  +   L  +  +I    LY +GA +    A   
Sbjct: 56  FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM 115

Query: 146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL 205
           ++ + +VG F+   G+G    AA  ++    P       ++L + F   G +     G  
Sbjct: 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175

Query: 206 LV 207
           L+
Sbjct: 176 LI 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 34/188 (18%)

Query: 180 MRGQLISLK-EFFIVL-GMVGGYGIG-SLLVDLVAGWRYMYGASTPLAVIMGMGMWWL-- 234
           +R  L+ L+    +++ G++G    G + +   V         S  +   M   ++WL  
Sbjct: 140 LRQALLELRPAKNVLIDGVLG---SGKTWVALDVC-------LSYKVQCKMDFKIFWLNL 189

Query: 235 --PASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGED 292
               SP  +L   M     +Q L                  +    +  I  EL  + + 
Sbjct: 190 KNCNSPETVL--EM-----LQKLLYQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKS 240

Query: 293 KE-----VSLREVFHGKCLKALIIGAGLVL---FQQITGQPSVLYYAASILQDFLQPLMQ 344
           K      + L  V + K   A  +   ++L   F+Q+T   S        L      L  
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 345 HGSQFYLA 352
              +  L 
Sbjct: 301 DEVKSLLL 308

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 13/124 (10%)

Query: 117 IADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETA 176
           I+D +GRR  +++   ++++  LV        +++    + G+G G+    A     +  
Sbjct: 58  ISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY 117

Query: 177 PTPMRGQLISLKEFFIVLGMVGGYG------IGSLLVDLVAGWRYMYGASTPLAVIMGMG 230
                    SL      L M           IG LL   +  WR  Y     L   +   
Sbjct: 118 ERTQLRHANSL------LNMGILVSPLLAPLIGGLLD-TMWNWRACYLFLLVLCAGVTFS 170

Query: 231 MWWL 234
           M   
Sbjct: 171 MARW 174

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 33/215 (15%), Positives = 65/215 (30%), Gaps = 16/215 (7%)

Query: 39  RPSPENYSVSAAILPFLFP-----ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSS 93
           +P+P    + AA +   +         G+ +GY          ++  P L        S 
Sbjct: 5   KPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV---EQGFSR 61

Query: 94  VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD----FII 149
            ++G   SG          +  +++D    R  L    +L     L     P       +
Sbjct: 62  GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 121

Query: 150 MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL 209
           M V  F+ G   G+        +        RG ++S+      +G      +  L +  
Sbjct: 122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181

Query: 210 VAGWRYMYGASTPLAVIMGMGMWWL----PASPRW 240
              W          A+++ +  + +    P S   
Sbjct: 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL 216

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 14/112 (12%), Positives = 38/112 (33%), Gaps = 8/112 (7%)

Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
           +G +  L+LA  +  V  + ++ A   + +V+ + +    +   +     YI        
Sbjct: 286 IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF 345

Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY-MYGASTPLAVIMGMGM 231
              +  +              +  + + ++AG  Y   G      V+  + +
Sbjct: 346 SATIYLV-------CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVAL 390

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.97
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.92
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.92
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.89
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.84
2xut_A	524	Proton/peptide symporter family protein; transport	99.72
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.61
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.52
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.5
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.46
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.33
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.32
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.08
2xut_A	524	Proton/peptide symporter family protein; transport	98.75

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.97  E-value=7.8e-29  Score=235.49  Aligned_cols=282  Identities=30%  Similarity=0.512  Sum_probs=218.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCC-ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018453           44 NYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGI-SWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG  122 (355)
Q Consensus        44 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G  122 (355)
                      +++.+..+.+.++++++.+.+||+.+.++..++.+.++..... ...+.+..+.|++.+++.+|.++|++++|+++||+|
T Consensus         4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G   83 (491)
T 4gc0_A            4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG   83 (491)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4556667777788899999999999999998888765321110 001334567899999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHH
Q 018453          123 RRRELILAALLYLVGALVTA------------------LAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQL  184 (355)
Q Consensus       123 rr~~~~~~~~l~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~  184 (355)
                      ||++++++.++..++.++++                  ++++++.++++|++.|++.|+..+..+.+++|+.|+++|++.
T Consensus        84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~  163 (491)
T 4gc0_A           84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL  163 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhh
Confidence            99999999999999999998                  478999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc-------ccchhHHHHhHHHHHHHHHHHHhhcccchhHHHHhhccccCchhhhHH
Q 018453          185 ISLKEFFIVLGMVGGYGIGSLLVDL-------VAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRE  257 (355)
Q Consensus       185 ~~~~~~~~~~g~~~~~~i~~~l~~~-------~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~  257 (355)
                      .++.+.+..+|.++++.++..+...       ...||+.+.+..++.++.++..+++||||+|+..++         +.+
T Consensus       164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~---------~~~  234 (491)
T 4gc0_A          164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRG---------KQE  234 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTT---------CHH
T ss_pred             HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcC---------chh
Confidence            9999999999999999988776542       126888888888888888888889999999999877         557


Q ss_pred             HHHHHHHHHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcccchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHH
Q 018453          258 SAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQD  337 (355)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (355)
                      ++++.+++.+++...+   ++..+..+..   .++++... ... ....++..+.....+++++.+.+.+.+|.|.+++.
T Consensus       235 ~a~~~l~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (491)
T 4gc0_A          235 QAEGILRKIMGNTLAT---QAVQEIKHSL---DHGRKTGG-RLL-MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT  306 (491)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHTT-HHH-HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHhcCCchhH---HHHHHHHHHH---Hhhhhhhh-HHH-HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh
Confidence            7777777765432211   1111111110   01111111 111 12345677778888899999999999999999988


Q ss_pred             hcccc
Q 018453          338 FLQPL  342 (355)
Q Consensus       338 ~~~~~  342 (355)
                      .+.+.
T Consensus       307 ~~~~~  311 (491)
T 4gc0_A          307 LGAST  311 (491)
T ss_dssp             SSCCH
T ss_pred             cCCCc
Confidence            77654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.92  E-value=6.3e-24  Score=198.52  Aligned_cols=230  Identities=17%  Similarity=0.193  Sum_probs=183.4

Q ss_pred             HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (355)
Q Consensus        55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~  134 (355)
                      +.+++..+..++.....++..|.+.++       +|++..+.+++.+++.+++.++.++.|+++||+|||+.++++.++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~  101 (438)
T 3o7q_A           29 ALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence            344555666777777888888888776       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH---HhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-ccc
Q 018453          135 LVGALVT---ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV-DLV  210 (355)
Q Consensus       135 ~~~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~-~~~  210 (355)
                      +++.++.   .++++++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.++++.+++.+. ...
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  181 (438)
T 3o7q_A          102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999   888999999999999999999999999999999999999999999999999999999999999988 554


Q ss_pred             cc------------------------hhHHHHhHHHHHHHHHHHHhhc--ccchhHHHHhhccccCchhhhHHHHHHHHH
Q 018453          211 AG------------------------WRYMYGASTPLAVIMGMGMWWL--PASPRWLLLCAMKRKGDMQDLRESAISCLC  264 (355)
Q Consensus       211 ~~------------------------w~~~~~~~~~~~~~~~~~~~~~--~esp~~l~~~~~~~~~~~~~~~~~~~~~~~  264 (355)
                      +.                        ||+.|++.+++.++..+..++.  ||+++.    .                   
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~-------------------  238 (438)
T 3o7q_A          182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----N-------------------  238 (438)
T ss_dssp             CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----C-------------------
T ss_pred             ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----c-------------------
Confidence            23                        9999988777766655544443  443220    0                   


Q ss_pred             HHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcccchhHHHHHHHHHHHHhhhhhhHHHHhHHHH-HHHh
Q 018453          265 RLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASI-LQDF  338 (355)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  338 (355)
                            ..              ++++++.+.+++++++++..+...+..++..+.    ...+..|.|.+ +++.
T Consensus       239 ------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  289 (438)
T 3o7q_A          239 ------HS--------------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGA----QTACWSYLIRYAVEEI  289 (438)
T ss_dssp             ------CC--------------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHS
T ss_pred             ------cc--------------cccccchhhhHHHHHhChHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcc
Confidence                  00              000122345667788887776666655444443    45677888888 7776

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.92  E-value=2.8e-24  Score=201.61  Aligned_cols=182  Identities=15%  Similarity=0.059  Sum_probs=163.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 018453           50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL  129 (355)
Q Consensus        50 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~  129 (355)
                      .+.....++++.+..++......+.+|.+.++       + .+..+.+++.+++.++..+++++.|+++||+|||+.+++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~   97 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA   97 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHH
Confidence            34444666777788888888888899988886       7 899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018453          130 AALLYLVGALVTAL----APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL  205 (355)
Q Consensus       130 ~~~l~~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  205 (355)
                      +.++.+++.++.++    +++++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.+++|.+++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  177 (451)
T 1pw4_A           98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL  177 (451)
T ss_dssp             HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999    89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccc-hhHHHHhHHHHHHHHHH-HHhhcccchhH
Q 018453          206 LVDLVAG-WRYMYGASTPLAVIMGM-GMWWLPASPRW  240 (355)
Q Consensus       206 l~~~~~~-w~~~~~~~~~~~~~~~~-~~~~~~esp~~  240 (355)
                      +.+.. + ||+.|++.++++++..+ ..+++||+|+.
T Consensus       178 l~~~~-g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  213 (451)
T 1pw4_A          178 GMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQS  213 (451)
T ss_dssp             HHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred             HHHHh-ccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence            88776 6 99999999888776544 45668888763

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.89  E-value=7.2e-23  Score=187.67  Aligned_cols=176  Identities=15%  Similarity=0.175  Sum_probs=157.7

Q ss_pred             HHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 018453           56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL  135 (355)
Q Consensus        56 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~  135 (355)
                      .+++..+..++......+.+|.+.++       +|.+..+.+++.+.+.++..+++++.|+++||+|||+.++++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   76 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM   76 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            34555566677777778888888776       89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhH
Q 018453          136 VGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY  215 (355)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  215 (355)
                      ++.++..++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..++|.+++.+.+.. +||+
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~  155 (375)
T 2gfp_A           77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRA  155 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998876 8999


Q ss_pred             HHHhHHHHHHHHHH-HHhhcccchh
Q 018453          216 MYGASTPLAVIMGM-GMWWLPASPR  239 (355)
Q Consensus       216 ~~~~~~~~~~~~~~-~~~~~~esp~  239 (355)
                      .|++.+++.++..+ ..+++||+++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          156 CYLFLLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred             HHHHHHHHHHHHHHHHHHHCcccCC
Confidence            99998888777665 4455777653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.84  E-value=9.2e-19  Score=166.07  Aligned_cols=144  Identities=15%  Similarity=0.125  Sum_probs=133.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (355)
                      +|++..+.+++.+++.++..+++++.|+++|| +|||++++++.++.+++.++.+++++++.++++|++.|++.|...+.
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  128 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN  128 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence            79999999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          168 APMYIAETAPTPM--RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       168 ~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      ...++.|++|+++  |+.++++++.+.++|..++|.+++.+.+.. +||+.|++.++..++..+..++
T Consensus       129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~  195 (491)
T 4aps_A          129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988  778888899999999999999999998877 8999999987777666555443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.72  E-value=7.3e-17  Score=154.27  Aligned_cols=142  Identities=18%  Similarity=0.200  Sum_probs=130.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhHHhHH
Q 018453           91 LSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        91 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      ++..+.+++.+++.++..++.++.|+++||+ |||+.+.++.++.+++.++.++++ +++.++++|++.|++.+...+..
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  130 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV  130 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence            9999999999999999999999999999999 999999999999999999999998 99999999999999999999999


Q ss_pred             HHHHHhhcCCCchhHHHHH---HHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          169 PMYIAETAPTPMRGQLISL---KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~---~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      ..++.|++|+++|+++.+.   .+.+..+|.+++|.+++.+.+.. +|++.|++.+++.++..+..++
T Consensus       131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999877666   89999999999999999988776 8999999988887766555444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.61  E-value=1.1e-13  Score=129.17  Aligned_cols=157  Identities=15%  Similarity=0.106  Sum_probs=133.5

Q ss_pred             cccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHH-HHHHHHHhh--h
Q 018453           71 TSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL--GRRRELILAALLYL-VGALVTALA--P  145 (355)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~l~~-~~~~~~~~~--~  145 (355)
                      .....|.+..+      .+|++..+.+++.+...++.+++.++.|++.||+  |||+.+.++.++.. ++.++..+.  .
T Consensus       271 ~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (451)
T 1pw4_A          271 ILDWSPTYLKE------VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG  344 (451)
T ss_dssp             HHHHHHHHBTT------BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             HHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhccc
Confidence            34455655553      2689999999999999999999999999999999  99999888877766 666666555  3


Q ss_pred             hHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHH-HHHHHHHHHHHhhccccchhHHHHhHHHHH
Q 018453          146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVDLVAGWRYMYGASTPLA  224 (355)
Q Consensus       146 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~  224 (355)
                      +.+.+.+..++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+.. ||+..|++.++++
T Consensus       345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~  423 (451)
T 1pw4_A          345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGS  423 (451)
T ss_dssp             CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHH
Confidence            6777888889999999988999899999999999999999999999999 9999999999999887 8999999988888


Q ss_pred             HHHHHHHhhc
Q 018453          225 VIMGMGMWWL  234 (355)
Q Consensus       225 ~~~~~~~~~~  234 (355)
                      +++.++.+++
T Consensus       424 ~~~~~~~~~~  433 (451)
T 1pw4_A          424 ILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7776655554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.52  E-value=1.9e-15  Score=140.46  Aligned_cols=146  Identities=18%  Similarity=0.212  Sum_probs=98.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH---HHHhhhhHH-HHHHHHHHHHHHHhhH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL---VTALAPDFI-IMVVGRFVFGIGIGLA  164 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~---~~~~~~~~~-~~~~~r~l~G~~~g~~  164 (355)
                      +|++..+.|++.+.+.++..++++++|+++||+|||+.++++..+..+...   ...+.+... .++.++++.|++.|..
T Consensus        38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  117 (417)
T 2cfq_A           38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC  117 (417)
T ss_dssp             TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999988877654321   112222111 1233444444433333


Q ss_pred             HhHHHHHHHhhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhccc
Q 018453          165 MHAAPMYIAETAPT--PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (355)
Q Consensus       165 ~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  236 (355)
                      .+.....+.++.++  ++|+...+....+..+|..++|.+++.+.+.  +|++.|++.+++.++..+..++.++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~~f~~~~~~~~~~~~~~~~~~~  189 (417)
T 2cfq_A          118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSGCALILAVLLFFAKT  189 (417)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred             HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHcCc
Confidence            32222333333322  3567777888788899999999999988763  7999999877765555544444443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.50  E-value=3.4e-13  Score=125.25  Aligned_cols=145  Identities=14%  Similarity=0.136  Sum_probs=122.2

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHH
Q 018453           92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMY  171 (355)
Q Consensus        92 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~  171 (355)
                      +....+++.++..++.+++.++.|+++||+|||+.+..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566888888888999999999999999999999998888888887777777787888888888888877777777889


Q ss_pred             HHhhcCCCchhHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh-cccc
Q 018453          172 IAETAPTPMRGQLISL-KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPAS  237 (355)
Q Consensus       172 ~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~es  237 (355)
                      +.|.+|++.||++.++ ++....+|.+++|.+++.+.+.. |++..|.+.+++++++.++.++ .||.
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            9999999999999998 48888999999999999988876 7999999888887776655444 5554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.46  E-value=7.8e-13  Score=123.10  Aligned_cols=142  Identities=8%  Similarity=-0.025  Sum_probs=119.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      +|.+..+.+++.+...++.+++.++.|++.||+|||+.+.++.++..++.++..+.++.+.++. -++.|++.+...+..
T Consensus       290 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~  368 (438)
T 3o7q_A          290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTI  368 (438)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999888888777765444 488899999999999


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      ..+..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..++++..|++.+++.++.++..++
T Consensus       369 ~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  431 (438)
T 3o7q_A          369 FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF  431 (438)
T ss_dssp             HHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999866 888888877 5669999999999999988733998888766555544444333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.33  E-value=4.5e-11  Score=112.94  Aligned_cols=150  Identities=15%  Similarity=0.048  Sum_probs=108.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHH-Hhh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA----PDFIIMVVGRFVFGIG-IGL  163 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~r~l~G~~-~g~  163 (355)
                      .+.+............+...++.++.+++.||+|||+.++.+.....++.+..+..    .+.+..++..++...+ ..+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (491)
T 4gc0_A          307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS  386 (491)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence            46666677777778888999999999999999999999998888888777665442    1122222222222222 222


Q ss_pred             HHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cchhHHHHhHHHHHHHHHH-HHhhcccc
Q 018453          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-----AGWRYMYGASTPLAVIMGM-GMWWLPAS  237 (355)
Q Consensus       164 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-----~~w~~~~~~~~~~~~~~~~-~~~~~~es  237 (355)
                      ..++...+.+|.+|.+.|++++++......+|+++++.+.+.+.+..     .++.+.|++.++++++..+ .++++|||
T Consensus       387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            44667789999999999999999999999999999988876654321     1455677777777777654 45679998


Q ss_pred             h
Q 018453          238 P  238 (355)
Q Consensus       238 p  238 (355)
                      .
T Consensus       467 k  467 (491)
T 4gc0_A          467 K  467 (491)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.32  E-value=4e-12  Score=120.23  Aligned_cols=143  Identities=12%  Similarity=0.031  Sum_probs=113.6

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHHHHHHhhh---------hHHHHHHHHH
Q 018453           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI-----LAALLYLVGALVTALAP---------DFIIMVVGRF  155 (355)
Q Consensus        90 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~l~~~~~~~~~~~~---------~~~~~~~~r~  155 (355)
                      +.+....+++.+...++..++.++.+++.||+|||+...     ++.++.+++.++..+..         +.+.+.+..+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (491)
T 4aps_A          315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA  394 (491)
T ss_dssp             CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred             ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence            444456677788888899999999999999999976544     67777777766665533         6677778889


Q ss_pred             HHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhc
Q 018453          156 VFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (355)
Q Consensus       156 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  234 (355)
                      +.|++.+...+....++.|.+|++.|++++++.+....+|..+++.+.+.+.+.  ++...|++.++++++..+..+++
T Consensus       395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  471 (491)
T 4aps_A          395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--SEVAYFSYFGLGSVVLGIVLVFL  471 (491)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--STTHHHHHTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998999999999999999999999999999999999999998887654  57778887777777665554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.08  E-value=9.2e-11  Score=106.85  Aligned_cols=128  Identities=16%  Similarity=0.099  Sum_probs=102.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHH--HHHh--hhhHHHHHHHHHHHHHHHhh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL-YLVGAL--VTAL--APDFIIMVVGRFVFGIGIGL  163 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l-~~~~~~--~~~~--~~~~~~~~~~r~l~G~~~g~  163 (355)
                      +|.+..+.+++.+...++.+++.++.+++.||+|++.  ..+..+ ...+..  ....  .++.+.+++..++.|++.+.
T Consensus       230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  307 (375)
T 2gfp_A          230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGM  307 (375)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH
Confidence            6888999999999999999999999999999998833  223322 222222  2222  23667777888999999999


Q ss_pred             HHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhH
Q 018453          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAS  220 (355)
Q Consensus       164 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~  220 (355)
                      ..+....++.|..| ++||++.++.+....+|..+++.+.+.+.+.. +|+..+++.
T Consensus       308 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-~~~~~~~~~  362 (375)
T 2gfp_A          308 LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLLMT  362 (375)
T ss_dssp             TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH-HHHHHHHHH
T ss_pred             hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccHHHHHH
Confidence            99999999999998 89999999999999999999999999887654 777776654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.75  E-value=8.7e-09  Score=98.07  Aligned_cols=139  Identities=9%  Similarity=0.049  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHhcc----HHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHH
Q 018453           95 EIGLITSGSLYGALIGSILAFNIA----DILGR----RRELILAALLYLVGALVTALA---------PDFIIMVVGRFVF  157 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~r~l~  157 (355)
                      ..+++.+...++.+++.++.+++.    +|.|+    ++.+.++.++.+++.++.++.         .+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            345566666666667776666553    55443    355667777777777766653         2566777888999


Q ss_pred             HHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc-cch---------hHHHHhHHHHHHHH
Q 018453          158 GIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-AGW---------RYMYGASTPLAVIM  227 (355)
Q Consensus       158 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-~~w---------~~~~~~~~~~~~~~  227 (355)
                      |++.+...+....++.|.+|+++||+++|+.+....+|..+++.+.+.+.+.. .+|         +..|++.++++++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887632 123         33466666666665


Q ss_pred             HHHHhh
Q 018453          228 GMGMWW  233 (355)
Q Consensus       228 ~~~~~~  233 (355)
                      .++.++
T Consensus       496 ~~~~~~  501 (524)
T 2xut_A          496 AIVFAL  501 (524)
T ss_dssp             HHHHC-
T ss_pred             HHHHHH
Confidence            554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	355
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	6e-10
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	9e-04
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-07
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	3e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 57.8 bits (138), Expect = 6e-10
 Identities = 22/165 (13%), Positives = 48/165 (29%), Gaps = 4/165 (2%)

Query: 80  SPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL 139
           +  +  +     S  ++G   SG          +  +++D    R  L    +L     L
Sbjct: 45  ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 104

Query: 140 VTALAPD----FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLG 195
                P       +M V  F+ G   G+        +        RG ++S+      +G
Sbjct: 105 FMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 164

Query: 196 MVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
                 +  L +     W          A+++ +  + +      
Sbjct: 165 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 209

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 38.5 bits (88), Expect = 9e-04
 Identities = 22/158 (13%), Positives = 49/158 (31%), Gaps = 7/158 (4%)

Query: 88  WYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL---- 143
               +  +         Y  + G++L   ++D + R            +  + T +    
Sbjct: 279 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN 338

Query: 144 -APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFI-VLGMVGGYG 201
            A +  + ++   V G  I   +    ++  E AP    G        F  + G V    
Sbjct: 339 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398

Query: 202 IGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPR 239
           I    VD   GW   +      +++  + +  +    +
Sbjct: 399 IVGYTVD-FFGWDGGFMVMIGGSILAVILLIVVMIGEK 435

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 5/182 (2%)

Query: 89  YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
             +S  + G+I +     +L+   L   ++D LG R+ L+      LV      +     
Sbjct: 38  NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97

Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYG--IGSLL 206
           ++     V  I  G+ +       A      +          F    M G  G  +G+ +
Sbjct: 98  LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157

Query: 207 VDLVA---GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCL 263
           V ++         +  S    ++  +  +    +P    +             + A+   
Sbjct: 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELF 217

Query: 264 CR 265
            +
Sbjct: 218 RQ 219

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 2/116 (1%)

Query: 129 LAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLK 188
           LA  +  V  + ++ A   + +V+ + +    +   +     YI           +  + 
Sbjct: 294 LAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353

Query: 189 -EFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLL 243
             FF  L M+    +   + + + G++  Y     +A+   +   +  + P  L L
Sbjct: 354 FCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	355
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.92
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.62
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.5
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.5

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=7.2e-25  Score=202.64  Aligned_cols=182  Identities=15%  Similarity=0.070  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 018453           50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL  129 (355)
Q Consensus        50 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~  129 (355)
                      .|...+.+.++.+..+++...++...|.+.+        +|+|.++.|++.+++.+++.+++++.|+++||+|||+++.+
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~--------~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   94 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVE--------QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA   94 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS--------STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            4555566677778888887788888887765        69999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018453          130 AALLYLVGALVTALAP----DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL  205 (355)
Q Consensus       130 ~~~l~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  205 (355)
                      +.++.+++.++.+++.    +++.++++|++.|++.|...+....++.|++|+++|++++++.+.+..+|.++++.+++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~  174 (447)
T d1pw4a_          95 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL  174 (447)
T ss_dssp             HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhh
Confidence            9999999999887764    678899999999999999999999999999999999999999999999999999999988


Q ss_pred             hhccccchhHHHHhHHHHHHHHHHH-Hhhcccchh
Q 018453          206 LVDLVAGWRYMYGASTPLAVIMGMG-MWWLPASPR  239 (355)
Q Consensus       206 l~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~esp~  239 (355)
                      +.....+||+.|++.++++++..++ +++.+++|+
T Consensus       175 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (447)
T d1pw4a_         175 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  209 (447)
T ss_dssp             HHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HhhhhhcccccchhhhhhHHHHHHHHHHhcccchh
Confidence            8776668999999888887765544 455666665

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=2.2e-15  Score=135.66  Aligned_cols=144  Identities=14%  Similarity=0.119  Sum_probs=129.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (355)
                      .+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  333 (417)
T d1pv7a_         254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC  333 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            45567788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCchhHHHHHH-HHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          169 PMYIAETAPTPMRGQLISLK-EFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       169 ~~~~~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      ..++.|.+|++.|++..++. +....+|..++|.+.+.+.+.. ||+..|++.++++++..++.++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999975 5678899999999999999987 8999999988887776554444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=4.2e-14  Score=127.09  Aligned_cols=165  Identities=15%  Similarity=0.082  Sum_probs=113.1

Q ss_pred             hhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhh
Q 018453           67 DIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD  146 (355)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~  146 (355)
                      ..+...+.+|.+..+      ++|+|..+.|++.+++.++..+++++.|+++||+|||+.++++..+..++.++..+..+
T Consensus        22 ~~~~~~~~l~~~l~~------~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~   95 (417)
T d1pv7a_          22 IMGAYFPFFPIWLHD------INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF   95 (417)
T ss_dssp             HHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHH------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhh
Confidence            333445566654331      27999999999999999999999999999999999999999999998888888877665


Q ss_pred             HHHHH----HHHHHHHHHHhhHHhHHHHHHHhhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhH
Q 018453          147 FIIMV----VGRFVFGIGIGLAMHAAPMYIAETAPT--PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAS  220 (355)
Q Consensus       147 ~~~~~----~~r~l~G~~~g~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~  220 (355)
                      .....    +.+++.+.+.+...........+..++  +++....+........+..+++.+++.+.+.  +|+..+...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~  173 (417)
T d1pv7a_          96 GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLG  173 (417)
T ss_dssp             HHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--cccccccch
Confidence            54433    344444444444444443333333322  3345566777888888999999999888765  455555554


Q ss_pred             HHH-HHHHHHHHhhcccchh
Q 018453          221 TPL-AVIMGMGMWWLPASPR  239 (355)
Q Consensus       221 ~~~-~~~~~~~~~~~~esp~  239 (355)
                      ... .++..+..++.+++++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~  193 (417)
T d1pv7a_         174 SGCALILAVLLFFAKTDAPS  193 (417)
T ss_dssp             HHHHHHHHHHHHSSCCCSCS
T ss_pred             hhHHHHHHHHHHHHhccccc
Confidence            444 4445555566666654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=7.6e-13  Score=120.84  Aligned_cols=144  Identities=16%  Similarity=0.120  Sum_probs=113.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH---HHHh--hhhHHHHHHHHHHHHHHHhh
Q 018453           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL---VTAL--APDFIIMVVGRFVFGIGIGL  163 (355)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~---~~~~--~~~~~~~~~~r~l~G~~~g~  163 (355)
                      ++.+..+.++..+...++.+++.++.|++.||++||+..........+..+   +...  ..+.+...++.++.|++.+.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  359 (447)
T d1pw4a_         280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG  359 (447)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred             cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999999986544433333222222   2211  34677777888889999888


Q ss_pred             HHhHHHHHHHhhcCCCchhHHHHHHHHHHHH-HHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (355)
Q Consensus       164 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  233 (355)
                      ..+....+..|.+|++.||++.|+.+....+ |.+++|.+.+.+.+.. ||+..|++.+++++++.++..+
T Consensus       360 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         360 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999887776 5677899999999887 8999998887777665554443