Citrus Sinensis ID: 018470

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
METTAIAQRFLPCIPSDTGDRFPIKYHLGFGDFRVSERTRNSFRRLSSRFSDCGHQQYYVSPRKETKKKEKEKSSEIKSVRKKLKFMKRLSSDLLPLEAFGNEDASSLRNEERISEAVQVLQAQLLQLRSEQKELKKMMKEKKAQIKTTMKERKGNRKSGSSSSSSSESSDSDNGDVIDTIPLRSNILKLSENIEVQKEIIVPALAKSATSLIQQDKLEDCCFRSGGECRNLNGRSNDQGYGIVERTTTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSINSLCIGVGLEDVDMILANILGKDMNNNCMMAPS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHcccHHHHHHHHHHHcccccEEEEccccccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHEEEEEEcccccccccccccEHHHcccccccEEEEEccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccEEEccccEEcccccccccccccEEEEcccccccEEEEEcccHcHHHHHHHHHHHHHHHccccEEEEEEEccccccccccEEEEEccccccccccccccccccccEEEEEcHHcHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
METTAIaqrflpcipsdtgdrfpikyhlgfgdfrvseRTRNSFRRLSsrfsdcghqqyyvsprketkkkeKEKSSEIKSVRKKLKFMKRLssdllpleafgnedasslrnEERISEAVQVLQAQLLQLRSEQKELKKMMKEKKAQIKTTMKerkgnrksgsssssssessdsdngdvidtiplrSNILKLSENIEVQKEIIVPALAKSATSLiqqdkledccfrsggecrnlngrsndqgygiverTTTTRTKRIEvcmggkckklgaGALLEEFErkagaecdvsmckcmgkcrdgpnlrvsnshdgdsairiqgyakpsinslcigvgleDVDMILANILgkdmnnncmmaps
Flexible Loop (DISEMBL)
mettaiaqrflpcipsdtgdRFPIKYHLgfgdfrvseRTRNSFRrlssrfsdcghqqyyvsprketkkkekeksseiksvrkkLKFMkrlssdllpleafGNEDASSLRNEERISEAVQVLQAQLLQLRSEQKELKKMMKEKKAQIkttmkerkgnrksgsssssssessdsdngdviDTIPLRSNILKLSENIEVQKEIIVPALAKSATSLIQQDKLEDCCFRSGgecrnlngrsndqgygiverttttrtkrievcmggkcKKLGAGALLEEFERKAGAECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSINSLCIGVGLEDVDMILANilgkdmnnncmmaps
Low Complexity Region (SEG)
METTAIAQRFLPCIPSDTGDRFPIKYHLGFGDFRVSErtrnsfrrlssrfsDCGHQQYYVSPRketkkkekeksseiksvrkkLKFMKRLSSDLLPLEAFGNEDASSLRNEERISEavqvlqaqllqlRSEQkelkkmmkekkAQIKTTMKerkgnrksgsssssssessdsdnGDVIDTIPLRSNILKLSENIEVQKEIIVPALAKSATSLIQQDKLEDCCFRSGGECRNLNGRSNDQGYGIVErttttrtKRIEVCMggkckklgagallEEFERKAGAECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSINSLCIGVGLEDVDMILANILGKDMNNNCMMAPS
Disordered region (IsUnstruct)
*****IAQRFLPCIPSDTGDRFPIKYHLGFGDFRVSE*******************************************************************************************************************************************VIDTIPLRSNILKLSENIEVQKEIIVPALAKSATSLIQQDKLEDCCFRSGGECRNLN******GYGIV***********************************GAECDVSMCKCMGKCRDG************SAIRIQGYAKPSINSLCIGVGLEDVDMILANILGKDM*********
Disordered Region (DISOPRED)
***TAIAQRFLPCIPSDTGDRFPIKYH******************LSSRFSDCGHQQYYV************************************LEAFGNE****LRN*ERISEAVQVLQ************************************************************************************************************************************IEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSINSLCIGVGLEDVDMILANILGKDMNNNC*****
Disordered Region (DISEMBL)
METTAIAQRFLPCIPSDTGDRFPIKYHLGFGDFRVSERTRNSFRRLSSRFSDCGHQQYYV******************SVRKKLKFMKRLSSDLLPLEAFGNEDASSLRNEERISEAVQVLQAQLLQLRSEQKE****************************************GDVIDTIPLRSNILKLSENIEVQKEIIVPALAKSATSLIQQDKLEDCCFRSGGECRNLNGRSNDQGYGIVERTTTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSINSLCIGVGLEDVDMILANILGKDMNNNCMMAPS
Disordered Region (DISPRO)
*ETTAIAQRFLPCIPSDTGDRFPIKYHLGFGDFRVSERTRNSFRRLSSRFSDCGHQQYYVSPRKET****KEKSSEIKSVRKKLKFMKRLSSDLLPLEAFGNEDASSLRNEERISEAVQVLQAQLLQLRSEQKELKKMMKEKKAQI*******************************I**IPLRSNILKLSENIEVQKEIIVPALAKSATSLIQQDKLEDCCFRSGGECRNLNGRSNDQGYGIVERTTTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMGKCRDGPNLRVSNSH**********YAKPSINSLCIGVGLEDVDMILANILGKDM*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METTAIAQRFLPCIPSDTGDRFPIKYHLGFGDFRVSERTRNSFRRLSSRFSDCGHQQYYVSPRKETKKKEKEKSSEIKSVRKKLKFMKRLSSDLLPLEAFGNEDASSLRNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRKGNRKSGSSSSSSSESSDSDNGDVIDTIPLRSNILKLSENIEVQKEIIVPALAKSATSLIQQDKLEDCCFRSGGECRNLNGRSNDQGYGIVERTTTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSINSLCIGVGLEDVDMILANILGKDMNNNCMMAPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
224064764	350	predicted protein [Populus trichocarpa]	0.856	0.868	0.373	5e-32
225432200	362	PREDICTED: uncharacterized protein LOC10	0.898	0.881	0.392	1e-30
357479209	341	hypothetical protein MTR_4g124080 [Medic	0.878	0.914	0.359	2e-22
217075689	341	unknown [Medicago truncatula] gi|3885084	0.853	0.888	0.365	3e-22
5733879	360	ESTs gb|N97074, gb|T13943 and gb|R89965	0.909	0.897	0.328	6e-22
224106990	237	predicted protein [Populus trichocarpa]	0.253	0.379	0.587	7e-22
297847084	360	predicted protein [Arabidopsis lyrata su	0.915	0.902	0.316	2e-21
255556610	332	soluble diacylglycerol acyltransferase [	0.783	0.837	0.347	6e-21
297736822	370	unnamed protein product [Vitis vinifera]	0.678	0.651	0.393	1e-20
307136211	331	diacylglycerol acyltransferase [Cucumis	0.239	0.256	0.571	3e-20

>gi|224064764|ref|XP_002301551.1| predicted protein [Populus trichocarpa] gi|222843277|gb|EEE80824.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 128/343 (37%), Positives = 178/343 (51%), Gaps = 39/343 (11%)

Query: 28  LGFGDFRVSERTRNSFRRLSSR-FSDCGHQQYYVSPRKETKKKEKEKSSEIKSVRKKLKF 86
           LG G   V  R++    R+ SR FSD GH +YYVSP +         S + +  +KK   
Sbjct: 32  LGTGKCGVPFRSKRYDHRILSRGFSDSGHLKYYVSPAR--------CSGKKEKSKKKQLK 83

Query: 87  MKRLSSDLLPLEAF---GNEDASSLRNEER---ISEAVQVLQAQLLQLRSEQKELKKMMK 140
           + R  S  LP+ ++   G E   SL  E +   ISEA ++L A+L   R E+KE K+  +
Sbjct: 84  LLRRLSRDLPIFSYAVCGEEGNGSLIGEVKEKMISEATEILLAELQNRRLERKEQKRKRR 143

Query: 141 EKKAQI-----KTTMKERKGNRKSGSSSSSSSESSDSDNGDVIDTIPLRSNILKLSENIE 195
           ++ A +     +        +  S S SSS   S    + +V+    +RS  L     IE
Sbjct: 144 DESATLIKNRPRCDSGSSSSSSSSSSGSSSPESSDSDCSREVVSMKQMRSKALNPFIEIE 203

Query: 196 VQKEIIVPALAKSATSLIQQDKLEDCCFRSGGECRNLNGRSNDQGYGIVERTTTTRTKRI 255
             K I      K AT   Q+D+  D    SG +  + + ++   G  I         ++I
Sbjct: 204 SAKAI------KEAT---QEDQHRDTV--SGAKSNDSSPQNLSDGVQI-----GASGRKI 247

Query: 256 EVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQ 315
           E+CMGGKC+KLGA ALLEEFERK G E  V  CKCMGKC  GPN+RV N    +  +R++
Sbjct: 248 EICMGGKCRKLGAAALLEEFERKIGMESAVVGCKCMGKCMKGPNVRVFNCTVENEDMRVE 307

Query: 316 GYAKPSINSLCIGVGLEDVDMILANIL---GKDMNNNCMMAPS 355
              KP +N LCIGVGL+DV +I   +L   GKD N+ C+MAPS
Sbjct: 308 DSIKPPLNLLCIGVGLKDVGIISRQLLGNDGKDRNHACLMAPS 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432200|ref|XP_002269582.1| PREDICTED: uncharacterized protein LOC100242564 [Vitis vinifera] gi|147865786|emb|CAN81152.1| hypothetical protein VITISV_020818 [Vitis vinifera]

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 183/349 (52%), Gaps = 30/349 (8%)

Query: 17  DTGDR---FPIKYHLGFGDFRVSERTRNSFRRLSSRFSDCGHQQYYV-SPRKETKKKEKE 72
           D+G+R   F     LG  D RV+ R R       S F D  H +YY  SPR   KK + +
Sbjct: 34  DSGNRISAFSELRLLGSRDSRVAVRPRKP-----SGFRDESHLKYYYESPRCGAKKDKDK 88

Query: 73  KSSEIKSVRKKLKFMK-RLSSDLLPLEAFGNEDASSLRNEER---ISEAVQVLQAQLLQL 128
            +++ KS   K       L SDL     FG +    L  E +   ISEA +VL  QL Q+
Sbjct: 89  VTTKKKSKLLKALSKDLSLFSDL----GFGVDSDEGLFGEVKGKMISEAAEVLLKQLQQM 144

Query: 129 RSEQKELKKMMKEKKAQIKTTMKERKGNRKSGSSSSSSSESSDSDNGDVIDTIPLRSNIL 188
           R+E+KELK+  KE+KA++K T  E           SSSSESSDS+ G+V+D   LRS   
Sbjct: 145 RAEEKELKRRRKEEKAKLKATRME-----TGVVCESSSSESSDSECGEVVDMTHLRSG-- 197

Query: 189 KLSENIEVQKEIIVPALAKSATSLIQQDKLEDCCFRSGGECRNLNGRSNDQGYGIVERTT 248
            + E I+ + + ++    + A  L +   L+       GEC      +        E+T 
Sbjct: 198 AVVEPIKDESQPVI----QEAKGLEEPSLLQPVTTTLKGECCTAVNTATSVAVDQNEKTQ 253

Query: 249 T--TRTKRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMGKCRDGPNLRVSNSH 306
                 KRIEVCMGGKCKK GA ALLEEFER  G E  V  CKCMGKCR GPN+RV NS 
Sbjct: 254 VMGAGAKRIEVCMGGKCKKSGAEALLEEFERVVGVEGAVVGCKCMGKCRVGPNVRVLNSI 313

Query: 307 DGDSAIRIQGYAKPSINSLCIGVGLEDVDMILANILGKDMNNNCMMAPS 355
           +G  A  +    +   N LC+GVGL+DV +I++N  G+   +  + AP+
Sbjct: 314 EGVEAEGMDDSVRTPANPLCVGVGLQDVGIIVSNFFGETHEDIGLPAPA 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479209|ref|XP_003609890.1| hypothetical protein MTR_4g124080 [Medicago truncatula] gi|355510945|gb|AES92087.1| hypothetical protein MTR_4g124080 [Medicago truncatula]

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 124/345 (35%), Positives = 176/345 (51%), Gaps = 33/345 (9%)

Query: 26  YHLGFGDFR-----VSERTRNSFRRLSSRFSDCGHQQYYVSPRKETKKKEKEKSSEIKSV 80
           Y  G G        V  R R S   + S F D GH QYY   +K T+         I S 
Sbjct: 13  YIFGVGTHTRSHGVVPRRVRMS---MGSGFHDEGHVQYYQDVKKNTE-------PVIISN 62

Query: 81  RKKLKFMKRLSSDLLPLEAFGNEDASSLRNEER---ISEAVQVLQAQLLQLRSEQKELKK 137
           +KK+K +KR S ++  L   G     +L ++     I+E  + L  +L ++R+E+KELKK
Sbjct: 63  KKKIKLLKRFSKNVSQLPQLGFAQDPNLLDQLHQNLITEGGEELLRELEKVRAEEKELKK 122

Query: 138 MMKEKKAQIKTTMKERKGNRKSGSSSSSSSESSDSDN--GDVIDTIPLR-SNILKLSENI 194
            MK++K + K    + K   KS SSSSSSSES  SD+  G+V+D    R + ++ ++   
Sbjct: 123 KMKQEKKKAKLKPSKMKTCNKSESSSSSSSESESSDSDCGEVVDMNTFRGAGVVDVATKP 182

Query: 195 --EVQKEIIVPALAKSATSLIQQDKLEDCCFRSGGECRNLNGRSNDQGYGIVERTTTTRT 252
             E++ ++  P L+    S      ++ C   +          +N            T  
Sbjct: 183 VDELELKLKQPMLSIPEDSTSHHHVMDVCTTNNASLVTGFKKETN--------VVIPTAQ 234

Query: 253 KRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSM--CKCMGKCRDGPNLRVSNSHDGDS 310
           KRIEVCMG KCKK GA ALL+EFE+  G E +  +  CKCMGKC+  PN+R+ NS D + 
Sbjct: 235 KRIEVCMGNKCKKSGAAALLQEFEKVVGVEGEGVVVGCKCMGKCKTAPNVRIQNSVDLNM 294

Query: 311 AIRIQGYAKPSINSLCIGVGLEDVDMILANILGKDMNNNCMMAPS 355
              I    K   N LCIGVGLEDVD I+A  LG+D  +  M+A +
Sbjct: 295 VQGIDDSVKIPSNPLCIGVGLEDVDTIVARFLGEDYKDVGMVAAA 339

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075689|gb|ACJ86204.1| unknown [Medicago truncatula] gi|388508412|gb|AFK42272.1| unknown [Medicago truncatula] gi|388510858|gb|AFK43495.1| unknown [Medicago truncatula]

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 173/331 (52%), Gaps = 28/331 (8%)

Query: 35  VSERTRNSFRRLSSRFSDCGHQQYYVSPRKETKKKEKEKSSEIKSVRKKLKFMKRLSSDL 94
           V  R R S   + S F D GH QYY   +K T+         I S +KK+K +KR S ++
Sbjct: 27  VPRRVRMS---MGSGFHDEGHVQYYQDVKKNTE-------PVIISNKKKIKLLKRFSKNV 76

Query: 95  LPLEAFGNEDASSLR---NEERISEAVQVLQAQLLQLRSEQKELKKMMKEKKAQIKTTMK 151
             L   G     +L    ++  I+E  + L  +L ++R+E+KELKK MK++K + K    
Sbjct: 77  SQLPQLGFAQDPNLLDQLHQNLITEGGEELLRELEKVRAEEKELKKKMKQEKKKAKLKPS 136

Query: 152 ERKGNRKSGSSSSSSSESSDSDN--GDVIDTIPLR-SNILKLSENI--EVQKEIIVPALA 206
           + K   KS SSSSSSSES  SD+  G+V+D    R + ++ ++     E++ ++  P L+
Sbjct: 137 KMKTCNKSESSSSSSSESESSDSDCGEVVDMNTFRGAGVVDVATKPVDELELKLKRPMLS 196

Query: 207 KSATSLIQQDKLEDCCFRSGGECRNLNGRSNDQGYGIVERTTTTRTKRIEVCMGGKCKKL 266
               S      ++ C   +          +N            T  KRIEVCMG KCKK 
Sbjct: 197 IPEDSTSHHHVMDVCTTNNASLVTGFKKETN--------VVIPTAQKRIEVCMGNKCKKS 248

Query: 267 GAGALLEEFERKAGAECDVSM--CKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSINS 324
           GA ALL+EFE+  G E +  +  CKCMGKC+  PN+R+ NS D +    I    K   N 
Sbjct: 249 GAAALLQEFEKVVGVEGEGVVVGCKCMGKCKTAPNVRIQNSVDLNMVQGIDDSVKIPSNP 308

Query: 325 LCIGVGLEDVDMILANILGKDMNNNCMMAPS 355
           LCIGVGLEDVD I+A  LG+D  +  M+A +
Sbjct: 309 LCIGVGLEDVDTIVARFLGEDYKDVGMVAAA 339

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5733879|gb|AAD49767.1|AC007932_15 ESTs gb|N97074, gb|T13943 and gb|R89965 come from this gene [Arabidopsis thaliana]

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 176/365 (48%), Gaps = 42/365 (11%)

Query: 1   METTAIAQRFLPCIPSDTGDRFPIKYHLGFGDFRVSERTRNSFRRL--SSRFSDCGHQQY 58
           ME + +  R +PC+ S +     +          V  RTR  FR +  ++ F+D GH  Y
Sbjct: 1   MEVSGVVLRQIPCVSSGSVAGLRLVSEFSGNTRTVGFRTRR-FRGIVCNNEFADKGHVNY 59

Query: 59  YVSPRK------ETKKKEKEKSSEIKSVRKKLKFMKRLSSDLLPLEAFGNEDASSLRNE- 111
           Y+ P +      + K  EKEK +  K  +      K L  D+     FG +  + L  E 
Sbjct: 60  YIEPTRCGEEKEKVKVMEKEKKALKKKAKVLKSLSKNL--DMFSSIGFGLDPEAGLVGEI 117

Query: 112 --ERISEAVQVLQAQLLQLRSEQKELKKMMKEKKAQIKTTMKERKGNRKSGSSSSSSSES 169
             + ISEA ++L  QL QL++E+K LKK  + K+ + K    ++     S SSSSS S  
Sbjct: 118 QTKTISEATEILVKQLEQLKAEEKILKK--QRKEEKAKAKAMKKMTEMDSESSSSSESSD 175

Query: 170 SDSDNGDVIDTIPLRSNILKLSENIEVQKEIIVPALAKSATSLIQQDKLEDCCFRSGGEC 229
           SD D G V+D   LR+    + E +  Q E  V  L +     IQ+D +  C  ++  E 
Sbjct: 176 SDCDKGKVVDMSSLRNKAKPVLEPL--QPEATVATLPR-----IQEDAI-SC--KNTSEA 225

Query: 230 RNLNGRSNDQGYGIVERTTTTRT-----------KRIEVCMGGKCKKLGAGALLEEFERK 278
             +  +++     +     T +T            R+EVCMGGKCK+ G   LL+EF+R 
Sbjct: 226 LQIALQTSTIFPSMANPGQTLKTVEAVSVVGLPLNRVEVCMGGKCKRSGGALLLDEFQRA 285

Query: 279 -AGAECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSINSLCIGVGLEDVDMI 337
             G E     CKCMGKCRDGPN+RV    D   A+       PS  +LC+GVGL+DV+ I
Sbjct: 286 MTGFEGSAVACKCMGKCRDGPNVRVVKETD---AVMTDSVRTPS-KTLCVGVGLQDVETI 341

Query: 338 LANIL 342
           + +  
Sbjct: 342 VTSFF 346

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106990|ref|XP_002314335.1| predicted protein [Populus trichocarpa] gi|222863375|gb|EEF00506.1| predicted protein [Populus trichocarpa]

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 69/97 (71%), Gaps = 7/97 (7%)

Query: 253 KRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMGKCRDGPNLRV--SNSHDGDS 310
           KRIEVCMG KCKK G  ALLEEFE+  G    V  CKCMGKCRDGPN+R+  S +   D 
Sbjct: 141 KRIEVCMGNKCKKSGGVALLEEFEKAVGIGGAVVGCKCMGKCRDGPNVRILKSGNEGVDD 200

Query: 311 AIRIQGYAKPSINSLCIGVGLEDVDMILANILGKDMN 347
           ++RI     P+ N LCIGVGLEDVD+I+AN  GK+++
Sbjct: 201 SVRI-----PAANPLCIGVGLEDVDVIVANFFGKELS 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847084|ref|XP_002891423.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297337265|gb|EFH67682.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 178/363 (49%), Gaps = 38/363 (10%)

Query: 1   METTAIAQRFLPCIPSDTGDRFPIKYHLGFGDFRVSERTRNSFRRL--SSRFSDCGHQQY 58
           ME + +  R +PC+ S +     +          V  RT+  FR +  ++ F+D GH  Y
Sbjct: 1   MEVSGVVLRQIPCVSSGSVACLRLVSEFSGNTRTVGFRTKK-FRGIVCNNEFADKGHMSY 59

Query: 59  YVSPRK----ETKKKEKEKSSEIKSVRKKLKFMKRLSSDLLPLEAFGNEDASSLRNE--- 111
           Y+ P +    + K K  EK  +    ++K+      + ++     FG +  + L  E   
Sbjct: 60  YIEPTRCGEEKEKVKVMEKEKKALKKKEKVLKSLSKNLNMFSSIGFGLDPEAGLVGEIQT 119

Query: 112 ERISEAVQVLQAQLLQLRSEQKELKKMMKEKKAQIKTTMKERKGNRKSGSSSSSSSESSD 171
           + ISEA ++L  QL QL++E+K LKK  + K+ + K    ++     S SSSSS S  SD
Sbjct: 120 KTISEATEILVKQLEQLKAEEKLLKK--QRKEEKAKAKAMKKMTEMDSESSSSSESSDSD 177

Query: 172 SDNGDVIDTIPLRSNILKLSENIEVQKEIIVPALAKSATSLIQQDKLEDCCFRSGGECRN 231
            D G V+D   LR+    + E +  Q E  V  L +     IQ+D  + C  ++  E   
Sbjct: 178 RDKGKVVDMSSLRNKTKPVLEPL--QPEATVATLPR-----IQEDA-QSC--KNTSEALQ 227

Query: 232 LNGRSNDQGYGIVERTTTTRT-----------KRIEVCMGGKCKKLGAGALLEEFERK-A 279
           +  +++     +     T +T           KR+EVCMGGKCKK G   LL+EF+R   
Sbjct: 228 IALQTSTVFPSMPNPVQTLKTVEAVSVVGLPLKRVEVCMGGKCKKSGGALLLDEFQRAMT 287

Query: 280 GAECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSINSLCIGVGLEDVDMILA 339
           G +     CKCMGKCRDGPN+RV N  D   ++       PS  ++C+GVGL+DV+ I+ 
Sbjct: 288 GFQGSAVACKCMGKCRDGPNVRVVNETD---SVMTDSVRTPS-KTVCVGVGLQDVETIVT 343

Query: 340 NIL 342
           +  
Sbjct: 344 SFF 346

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556610|ref|XP_002519339.1| soluble diacylglycerol acyltransferase [Ricinus communis] gi|223541654|gb|EEF43203.1| soluble diacylglycerol acyltransferase [Ricinus communis]

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 149/328 (45%), Gaps = 50/328 (15%)

Query: 36  SERTRNSFRRLSSR---FSDCGHQQYYVSP---RKETKKKEKEKSSEIKSVRKKLKFMKR 89
           S R R +F R+S     F D GH QYY      R     K+  K            F   
Sbjct: 28  SLRPRKAFHRVSDSCLGFRDNGHLQYYCQGGFVRCGGGNKKSIKKKLKLVKSLSEDF--- 84

Query: 90  LSSDLLPLEAFGNEDASSLRNEERIS--EAVQVLQAQLLQLRSEQKELKKMMKEKKAQIK 147
               + P       + + L   + IS  EA Q L  QL +LR+         KEK+ + +
Sbjct: 85  ---SMFP------HNNALLHQPQSISLQEAAQGLMKQLQELRA---------KEKELKRQ 126

Query: 148 TTMKERKGNRKSGSSSSSSSESSDSDNGDVI-------DTIPLR-SNILKLSENIEVQKE 199
              +++   +   SSSSSS  SSDS+ G+VI       +TIP     +  L+ +      
Sbjct: 127 KKQEKKAKLKSESSSSSSSESSSDSERGEVIHMSRFRDETIPAALPQLHPLTHHHPTSTL 186

Query: 200 IIVPALAKSATSLIQQDKLEDCCFRSGGECRNLNGRS-NDQGYGIVERTTTTRTKRIEVC 258
            + P    +          + CC        N  G   ND+   + E  +     RIEVC
Sbjct: 187 PVSPTQECNPMDYTSTHHEKRCCVGPSTGADNAVGDCCNDRNSSMTEELSA---NRIEVC 243

Query: 259 MGGKCKKLGAGALLEEFERKAGAECDVSMCKCMGKCRDGPNLRVSNS---HDGDSAIRIQ 315
           MG KCKK G  ALLEEF+R  G E  V  CKCMG CRDGPN+RV NS    + D ++R  
Sbjct: 244 MGNKCKKSGGAALLEEFQRVLGVEAAVVGCKCMGNCRDGPNVRVRNSVQDRNTDDSVRT- 302

Query: 316 GYAKPSINSLCIGVGLEDVDMILANILG 343
               PS N LCIGVGLEDVD+I+AN  G
Sbjct: 303 ----PS-NPLCIGVGLEDVDVIVANFFG 325

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736822|emb|CBI26023.3| unnamed protein product [Vitis vinifera]

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 118/300 (39%), Positives = 148/300 (49%), Gaps = 59/300 (19%)

Query: 17  DTGDR---FPIKYHLGFGDFRVSERTRNSFRRLSSRFSDCGHQQYYV-SPRKETKKKEKE 72
           D+G+R   F     LG  D RV+ R R       S F D  H +YY  SPR   KK + +
Sbjct: 34  DSGNRISAFSELRLLGSRDSRVAVRPRKP-----SGFRDESHLKYYYESPRCGAKKDKDK 88

Query: 73  KSSEIKSVRKKLKFMK-RLSSDLLPLEAFGNEDASSLRNEER---ISEAVQVLQAQLLQL 128
            +++ KS   K       L SDL     FG +    L  E +   ISEA +VL  QL Q+
Sbjct: 89  VTTKKKSKLLKALSKDLSLFSDL----GFGVDSDEGLFGEVKGKMISEAAEVLLKQLQQM 144

Query: 129 RSEQKELKKMMKEKKAQIKTTMKERKGNRKSGSSSSSSSESSDSDNGDVIDTIPLRSNIL 188
           R+E+KELK+  KE+KA++K T  E           SSSSESSDS+ G+V+D   LRS   
Sbjct: 145 RAEEKELKRRRKEEKAKLKATRME-----TGVVCESSSSESSDSECGEVVDMTHLRSGA- 198

Query: 189 KLSENIEVQKEIIVPALAKSATSLIQQDKLEDCCFRSGGECRNLNGRSNDQGYGIVERTT 248
                       +V  +   +  +IQ+ K                        G+ E   
Sbjct: 199 ------------VVEPIKDESQPVIQEAK------------------------GLEEPMM 222

Query: 249 TTRTKRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMGKCRDGPNLRVSNSHDG 308
               KRIEVCMGGKCKK GA ALLEEFER  G E  V  CKCMGKCR GPN+RV NS +G
Sbjct: 223 GAGAKRIEVCMGGKCKKSGAEALLEEFERVVGVEGAVVGCKCMGKCRVGPNVRVLNSIEG 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136211|gb|ADN34049.1| diacylglycerol acyltransferase [Cucumis melo subsp. melo]

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 64/98 (65%), Gaps = 13/98 (13%)

Query: 247 TTTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMGKCRDGPNLRVSNSH 306
           T +T   RIEVCMG KCKK GA AL+EEFER  G E  V  CKCMGKCRDGPN+RV  S 
Sbjct: 233 TRSTSVGRIEVCMGNKCKKAGAAALMEEFERVMGDEAAVCGCKCMGKCRDGPNVRVLGS- 291

Query: 307 DGDSAIRIQGYAKPSINSLCIGVGLEDVDMILANILGK 344
                + +Q       N LCIGVG+EDVD I+A  LG+
Sbjct: 292 -----MEMQ-------NPLCIGVGVEDVDRIVAEYLGQ 317

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
TAIR|locus:2007750	285	DGAT3 "AT1G48300" [Arabidopsis	0.712	0.887	0.240	1.4e-11

TAIR|locus:2007750 DGAT3 "AT1G48300" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 65/270 (24%), Positives = 103/270 (38%)

Query:    85 KFMKRLSS--DLLPLEAFGNEDASSLRNE---ERISEXXXXXXXXXXXXRSEQXXXXXXX 139
             K +K LS   D+     FG +  + L  E   + ISE            ++E+       
Sbjct:    13 KVLKSLSKNLDMFSSIGFGLDPEAGLVGEIQTKTISEATEILVKQLEQLKAEEKILKKQR 72

Query:   140 XXXXAQIKTTMKXXXXXXXXXXXXXXXXXXXXXXXGDVIDTIPLRSNILKLSENIEVQKE 199
                 A+ K   K                       G V+D   LR+    + E ++ +  
Sbjct:    73 KEEKAKAKAMKKMTEMDSESSSSSESSDSDCDK--GKVVDMSSLRNKAKPVLEPLQPEAT 130

Query:   200 II-VPALAKSATSLIQQDKLEDCCFRSGGECRNLNGRSNDQGYGIVEXXXXXXX--KRIE 256
             +  +P + + A S     +      ++     ++   +  Q    VE          R+E
Sbjct:   131 VATLPRIQEDAISCKNTSEALQIALQTSTIFPSM--ANPGQTLKTVEAVSVVGLPLNRVE 188

Query:   257 VCMXXXXXXXXXXXXXEEFERK-AGAECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQ 315
             VCM             +EF+R   G E     CKCMGKCRDGPN+RV    D   A+   
Sbjct:   189 VCMGGKCKRSGGALLLDEFQRAMTGFEGSAVACKCMGKCRDGPNVRVVKETD---AVMTD 245

Query:   316 GYAKPSINSLCIGVGLEDVDMILANILGKD 345
                 PS  +LC+GVGL+DV+ I+ +   ++
Sbjct:   246 SVRTPS-KTLCVGVGLQDVETIVTSFFDEE 274


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      355       255   0.00085  114 3  11 22  0.46    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  179 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.40u 0.12s 16.52t   Elapsed:  00:00:01
  Total cpu time:  16.40u 0.12s 16.52t   Elapsed:  00:00:01
  Start:  Sat May 11 15:55:12 2013   End:  Sat May 11 15:55:13 2013

GO:0004144 "diacylglycerol O-acyltransferase activity" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0008152 "metabolic process" evidence=IGI

GO:0019432 "triglyceride biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	355
cd02980	77	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2F	2e-08

>gnl|CDD|239278 cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 253 KRIEVCMGGKCKKLGAGALLEEFERKAGA-----ECDVSMCKCMGKCRDGPNLRVSNSHD 307
             I VC G  C   GA  LLE  E++ G         V    C+G C   P + V     
Sbjct: 1   HHILVCTGTACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYPDGV 60

TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
cd03064	80	TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) fami	99.72
cd03063	92	TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd)	99.72
cd02980	77	TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferr	99.69
cd03081	80	TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin	99.67
cd03083	80	TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd)	99.64
PRK07539	154	NADH dehydrogenase subunit E; Validated	99.63
TIGR01958	148	nuoE_fam NADH-quinone oxidoreductase, E subunit. T	99.63
PF01257	145	2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredo	99.62
cd03082	72	TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxi	99.59
PRK05988	156	formate dehydrogenase subunit gamma; Validated	99.52
PRK07571	169	bidirectional hydrogenase complex protein HoxE; Re	99.52
cd03062	97	TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) f	99.5
COG1905	160	NuoE NADH:ubiquinone oxidoreductase 24 kD subunit	99.48
PRK12373	400	NADH dehydrogenase subunit E; Provisional	99.33
COG3411	64	Ferredoxin [Energy production and conversion]	99.11
KOG3196	233	consensus NADH:ubiquinone oxidoreductase, NDUFV2/2	99.03
PF06999	230	Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: I	97.89
PF07845	116	DUF1636: Protein of unknown function (DUF1636); In	97.58
COG5469	143	Predicted metal-binding protein [Function unknown]	96.42
PF07293	78	DUF1450: Protein of unknown function (DUF1450); In	95.6
PRK13669	78	hypothetical protein; Provisional	93.66

>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes

Probab=99.72  E-value=1.4e-17  Score=129.92  Aligned_cols=71  Identities=32%  Similarity=0.597  Sum_probs=64.8

Q ss_pred             CcEEEEccCCccccccHHHHHHHHHHHhCC---------ccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCCCCCC
Q 018470          252 TKRIEVCMGGKCKKLGAGALLEEFERKAGA---------ECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSI  322 (355)
Q Consensus       252 ~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~---------eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v~~p~  322 (355)
                      +++|+||+|+.|..+||.+|+++|++.++.         .+.+..+||||.|..||+|.|++                  
T Consensus         1 ~~~v~vC~~~~C~~~Ga~~~~~~l~~~l~~~~~~~~~~~~v~v~~t~ClG~C~~gP~v~v~g------------------   62 (80)
T cd03064           1 KHVIRVCTGTACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAPVMMIND------------------   62 (80)
T ss_pred             CEEEEECCCcHHHhCCHHHHHHHHHHHhCCCCCCcCCCCEEEEEEecCcCcCCCCCEEEECC------------------
Confidence            578999999999999999999999999862         36899999999999999999964                  


Q ss_pred             ceeeecCCcchHHHHHHHH
Q 018470          323 NSLCIGVGLEDVDMILANI  341 (355)
Q Consensus       323 n~lY~~VtpEDVdeIVe~h  341 (355)
                       .||.+|++++|++||+++
T Consensus        63 -~~y~~vt~~~i~~i~~~~   80 (80)
T cd03064          63 -DVYGRLTPEKVDAILEAL   80 (80)
T ss_pred             -EEECCCCHHHHHHHHHhC
Confidence             899999999999999763

It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu

>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH

Probab=99.72  E-value=2.2e-17  Score=135.69  Aligned_cols=76  Identities=22%  Similarity=0.148  Sum_probs=68.7

Q ss_pred             EEEEccCCccccccHHHHHHHHHHHhC---CccEEEeecCCCCCCCCCeEEEe-CCCCCChhhhhccCCCCCCceeeecC
Q 018470          254 RIEVCMGGKCKKLGAGALLEEFERKAG---AECDVSMCKCMGKCRDGPNLRVS-NSHDGDSAIRIQGYAKPSINSLCIGV  329 (355)
Q Consensus       254 rI~VC~Gt~C~ksGS~aVLeafee~Lg---~eV~V~~tGCLG~Cg~GPnVrV~-pe~dg~~~~~~~~~v~~p~n~lY~~V  329 (355)
                      +|+||+||+|.++||.+|+++|++++.   .++.|+.+||||+|..||+|.|+ |  ++              +++|.+|
T Consensus         2 ~I~Vc~gT~ciAaGA~~V~~al~~ei~~~gl~v~v~~tGC~G~C~~ePlV~V~~p--~g--------------~v~Y~~V   65 (92)
T cd03063           2 RIYVPRDAAALALGADEVAEAIEAEAAARGLAATIVRNGSRGMYWLEPLVEVETP--GG--------------RVAYGPV   65 (92)
T ss_pred             EEEEeCChhhhhhCHHHHHHHHHHHHHHcCCeEEEEEecCceecCCCCEEEEEeC--CC--------------cEEEEeC
Confidence            699999999999999999999999985   35799999999999999999996 7  22              2899999


Q ss_pred             CcchHHHHHHHHhcCC
Q 018470          330 GLEDVDMILANILGKD  345 (355)
Q Consensus       330 tpEDVdeIVe~hlg~~  345 (355)
                      +++||++||+.|+.+.
T Consensus        66 ~~edv~~Iv~~~~~~~   81 (92)
T cd03063          66 TPADVASLLDAGALEG   81 (92)
T ss_pred             CHHHHHHHHHHHhhcC
Confidence            9999999999998754

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c

>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)

Probab=99.69  E-value=5.6e-17  Score=123.77  Aligned_cols=72  Identities=35%  Similarity=0.565  Sum_probs=66.1

Q ss_pred             cEEEEccCCccccccHHHHHHHHHHHhCC-----ccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCCCCCCceeee
Q 018470          253 KRIEVCMGGKCKKLGAGALLEEFERKAGA-----ECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSINSLCI  327 (355)
Q Consensus       253 ~rI~VC~Gt~C~ksGS~aVLeafee~Lg~-----eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v~~p~n~lY~  327 (355)
                      ++|+||+++.|..+|+.+|+++|++.+..     ++.+..++|||.|..||+|.|+|  ++               .||.
T Consensus         1 ~~I~VC~~~~C~~~G~~~l~~~l~~~~~~~~~~~~v~v~~~~Clg~C~~~P~v~i~~--~~---------------~~y~   63 (77)
T cd02980           1 HHILVCTGTACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYP--DG---------------VWYG   63 (77)
T ss_pred             CEEEEccCCCcccCCHHHHHHHHHHHHhhhcCCCeEEEEEcCCcCcccCCCEEEEeC--CC---------------eEEc
Confidence            57999999999999999999999999863     57999999999999999999998  22               7999


Q ss_pred             cCCcchHHHHHHHH
Q 018470          328 GVGLEDVDMILANI  341 (355)
Q Consensus       328 ~VtpEDVdeIVe~h  341 (355)
                      +|+++++++||++|
T Consensus        64 ~v~~~~~~~il~~~   77 (77)
T cd02980          64 RVTPEDVEEIVEEL   77 (77)
T ss_pred             cCCHHHHHHHHHhC
Confidence            99999999999875

TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.

>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH

Probab=99.67  E-value=9.9e-17  Score=126.61  Aligned_cols=70  Identities=23%  Similarity=0.473  Sum_probs=64.2

Q ss_pred             CcEEEEccCCccccccHHHHHHHHHHHhCC---------ccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCCCCCC
Q 018470          252 TKRIEVCMGGKCKKLGAGALLEEFERKAGA---------ECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSI  322 (355)
Q Consensus       252 ~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~---------eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v~~p~  322 (355)
                      +++|.||+|++|+.+||.+|+++|++.++.         .++|..++|||.|+.||+|+|+.                  
T Consensus         1 ~~~i~vC~~~~C~~~G~~~ll~~l~~~l~~~~g~~~~dg~~~l~~~~ClG~C~~gP~~~v~~------------------   62 (80)
T cd03081           1 RHVLKLCRAEACQAMGAEALAAHIKARLGIDFHETTADGSVTLEPVYCLGLCACSPAAMIDG------------------   62 (80)
T ss_pred             CeEEEEcCChHHHhCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEeeecCccCCCCEEEECC------------------
Confidence            579999999999999999999999999863         26899999999999999999954                  


Q ss_pred             ceeeecCCcchHHHHHHH
Q 018470          323 NSLCIGVGLEDVDMILAN  340 (355)
Q Consensus       323 n~lY~~VtpEDVdeIVe~  340 (355)
                       .||.++++++|++||++
T Consensus        63 -~~~~~~~~e~i~~il~~   79 (80)
T cd03081          63 -EVHGRVDPEKFDALLAE   79 (80)
T ss_pred             -EEECCCCHHHHHHHHHc
Confidence             78999999999999975

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat

>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16

Probab=99.64  E-value=3.2e-16  Score=123.70  Aligned_cols=70  Identities=23%  Similarity=0.335  Sum_probs=63.9

Q ss_pred             CcEEEEccCCccccccHHHHHHHHHHHhCC---------ccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCCCCCC
Q 018470          252 TKRIEVCMGGKCKKLGAGALLEEFERKAGA---------ECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSI  322 (355)
Q Consensus       252 ~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~---------eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v~~p~  322 (355)
                      +++|.||.|++|+.+||.+|+++|++.++.         .+.+..++|||.|..||+|+|++                  
T Consensus         1 ~~~i~vC~~~~C~~~Ga~~v~~~l~~~l~~~~~~~t~d~~v~l~~~gClG~C~~~P~v~V~~------------------   62 (80)
T cd03083           1 KYRIYLSDSITDRMNGYKAVLDALCRELGIRFGEVDEDGMVGLFFTSCTGLCDQGPALLINN------------------   62 (80)
T ss_pred             CEEEEEcCChHHHhCCHHHHHHHHHHHHCCCCCCcCCCCeEEEEEeceecCcCCCCeEEECC------------------
Confidence            578999999999999999999999999962         25899999999999999999954                  


Q ss_pred             ceeeecCCcchHHHHHHH
Q 018470          323 NSLCIGVGLEDVDMILAN  340 (355)
Q Consensus       323 n~lY~~VtpEDVdeIVe~  340 (355)
                       .+|.+|+++||++||+.
T Consensus        63 -~~y~~v~~~~v~~iv~~   79 (80)
T cd03083          63 -RVFTRLTPGRIDQIAEL   79 (80)
T ss_pred             -EEECCCCHHHHHHHHhc
Confidence             78999999999999975

HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved

>PRK07539 NADH dehydrogenase subunit E; Validated

Probab=99.63  E-value=5.5e-16  Score=135.97  Aligned_cols=76  Identities=21%  Similarity=0.475  Sum_probs=68.7

Q ss_pred             cccCCCcEEEEccCCccccccHHHHHHHHHHHhCC---------ccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccC
Q 018470          247 TTTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGA---------ECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGY  317 (355)
Q Consensus       247 ~~~~~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~---------eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~  317 (355)
                      ....++++|+||+|+.|+.+||.+|+++|++.+++         .+++..++|||.|+.||+|+|++             
T Consensus        69 ~~p~gk~~I~VC~g~~C~~~Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~ClG~C~~gPvv~V~~-------------  135 (154)
T PRK07539         69 RQPVGRHVIQVCTSTPCWLRGGEAILAALKKKLGIKPGETTADGRFTLLEVECLGACDNAPVVMIND-------------  135 (154)
T ss_pred             cCCCCCEEEEEcCCchHHHCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEccccCccCCCCEEEECC-------------
Confidence            34567899999999999999999999999999872         25889999999999999999986             


Q ss_pred             CCCCCceeeecCCcchHHHHHHHH
Q 018470          318 AKPSINSLCIGVGLEDVDMILANI  341 (355)
Q Consensus       318 v~~p~n~lY~~VtpEDVdeIVe~h  341 (355)
                            .||.+|++++|++||+++
T Consensus       136 ------~~y~~vt~e~v~~il~~~  153 (154)
T PRK07539        136 ------DTYEDLTPEKIDELLDEL  153 (154)
T ss_pred             ------EEeCCCCHHHHHHHHHhc
Confidence                  689999999999999875

>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit

Probab=99.63  E-value=5.6e-16  Score=134.96  Aligned_cols=75  Identities=23%  Similarity=0.447  Sum_probs=68.5

Q ss_pred             ccCCCcEEEEccCCccccccHHHHHHHHHHHhCC---------ccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCC
Q 018470          248 TTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGA---------ECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYA  318 (355)
Q Consensus       248 ~~~~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~---------eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v  318 (355)
                      .+.++++|.||+|++|+.+||.+|+++|++.+++         .+++..++|||.|+.||+|+|++              
T Consensus        64 ~p~gk~~I~VC~g~~C~~~Ga~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~ClG~C~~aP~v~V~~--------------  129 (148)
T TIGR01958        64 EPVGRYHLQVCTNVPCALRGSEALLKYLENKLGIKPGETTPDGRFTLVEVECLGACGNAPVMMIND--------------  129 (148)
T ss_pred             CCCCCEEEEEcCCchhhhcCHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCccCccCCCCEEEECC--------------
Confidence            4567899999999999999999999999999974         25899999999999999999986              


Q ss_pred             CCCCceeeecCCcchHHHHHHHH
Q 018470          319 KPSINSLCIGVGLEDVDMILANI  341 (355)
Q Consensus       319 ~~p~n~lY~~VtpEDVdeIVe~h  341 (355)
                           .+|.+|+++++++||+++
T Consensus       130 -----~~y~~vt~e~v~~il~~~  147 (148)
T TIGR01958       130 -----DYYEFLTPEKLDELLERY  147 (148)
T ss_pred             -----EEeCCCCHHHHHHHHHhc
Confidence                 689999999999999864

This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.

>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=99.62  E-value=7.9e-16  Score=133.65  Aligned_cols=76  Identities=30%  Similarity=0.533  Sum_probs=66.5

Q ss_pred             cccCCCcEEEEccCCccccccHHHHHHHHHHHhCC---------ccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccC
Q 018470          247 TTTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGA---------ECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGY  317 (355)
Q Consensus       247 ~~~~~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~---------eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~  317 (355)
                      ..+.++++|.||+|+.|+.+||.+|+++|++.+++         .+++..++|||.|..||+|+|++             
T Consensus        60 ~~p~gk~~I~VC~g~~C~~~Ga~~l~~~l~~~l~i~~g~~~~dg~~~l~~~~ClG~C~~aP~v~V~~-------------  126 (145)
T PF01257_consen   60 LEPKGKHHIRVCTGTSCHLRGAEELLEALEEELGIKPGETTEDGKFTLEETGCLGACDQAPVVMVDG-------------  126 (145)
T ss_dssp             SSS--SEEEEEE-SHHHHTTTHHHHHHHHHHHHCTSCCCCSTTTTEEEEEESSSSSGGGSSEEEECC-------------
T ss_pred             cCCCCCcEEEeCCCchHHhCCCHHHHHHHHHHhCCcccccCCCceEEEEECCCccccCCCCEEEECC-------------
Confidence            35667899999999999999999999999999962         35899999999999999999965             


Q ss_pred             CCCCCceeeecCCcchHHHHHHHH
Q 018470          318 AKPSINSLCIGVGLEDVDMILANI  341 (355)
Q Consensus       318 v~~p~n~lY~~VtpEDVdeIVe~h  341 (355)
                            .||.+|++++|++||+++
T Consensus       127 ------~~y~~vt~e~v~~il~~l  144 (145)
T PF01257_consen  127 ------EWYGNVTPEKVDEILEEL  144 (145)
T ss_dssp             ------CEEESSSCCHHHHHHHHH
T ss_pred             ------EEECCCCHHHHHHHHHhc
Confidence                  689999999999999876

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....

>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens

Probab=99.59  E-value=2.5e-15  Score=117.53  Aligned_cols=69  Identities=25%  Similarity=0.415  Sum_probs=64.2

Q ss_pred             cEEEEccCCccccccHHHHHHHHHHHhCC-ccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCCCCCCceeeecCCc
Q 018470          253 KRIEVCMGGKCKKLGAGALLEEFERKAGA-ECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSINSLCIGVGL  331 (355)
Q Consensus       253 ~rI~VC~Gt~C~ksGS~aVLeafee~Lg~-eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v~~p~n~lY~~Vtp  331 (355)
                      ++|.||+|+.|+.+||.+|+++|++.++. .+++..++|||.|+.||+|+|++                   .+|.++++
T Consensus         2 ~~I~vC~~~~C~~~Ga~~l~~~l~~~L~~~~v~l~~~~ClG~C~~gP~v~V~~-------------------~~~~~~t~   62 (72)
T cd03082           2 LTVRVCDSLSCAMAGAEELLAALEAGLGPEGVRVVRAPCVGRCERAPAALVGQ-------------------RPVDGATP   62 (72)
T ss_pred             eEEEEcCChHHHHCCHHHHHHHHHHHhCCCeEEEEecCcCCccCCCCeEEECC-------------------EEeCCcCH
Confidence            58999999999999999999999999986 58999999999999999999987                   57999999


Q ss_pred             chHHHHHHH
Q 018470          332 EDVDMILAN  340 (355)
Q Consensus       332 EDVdeIVe~  340 (355)
                      ++++++++.
T Consensus        63 ~~i~~~~~~   71 (72)
T cd03082          63 AAVAAAVEA   71 (72)
T ss_pred             HHHHHHHhc
Confidence            999998863

W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen

>PRK05988 formate dehydrogenase subunit gamma; Validated

Probab=99.52  E-value=2.9e-14  Score=126.32  Aligned_cols=77  Identities=18%  Similarity=0.399  Sum_probs=69.6

Q ss_pred             cccCCCcEEEEccCCccccccHHHHHHHHHHHhCC-------c--cEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccC
Q 018470          247 TTTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGA-------E--CDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGY  317 (355)
Q Consensus       247 ~~~~~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~-------e--V~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~  317 (355)
                      ....++++|.||+|+.|+.+||.+|+++|++.|++       +  +++..+.|+|.|+.||+|+|+.             
T Consensus        70 ~~p~Gk~~I~VC~~~~C~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~C~~aP~~~in~-------------  136 (156)
T PRK05988         70 THPPGRHVLKLCRAEACQAMGGDALAAHAKARLGIDFHQTTADGAVTLEPVYCLGLCACSPAAMLDG-------------  136 (156)
T ss_pred             CCCCCCEEEEEeCCchhhcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCCeEEECC-------------
Confidence            35678999999999999999999999999999973       2  4899999999999999999976             


Q ss_pred             CCCCCceeeecCCcchHHHHHHHHh
Q 018470          318 AKPSINSLCIGVGLEDVDMILANIL  342 (355)
Q Consensus       318 v~~p~n~lY~~VtpEDVdeIVe~hl  342 (355)
                            .+|.+++++++++|++++.
T Consensus       137 ------~~~~~lt~~~~~~il~~~~  155 (156)
T PRK05988        137 ------EVHGRLDPQRLDALLAEAR  155 (156)
T ss_pred             ------EEeCCCCHHHHHHHHHHhh
Confidence                  6799999999999998764

>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed

Probab=99.52  E-value=2.5e-14  Score=128.62  Aligned_cols=75  Identities=21%  Similarity=0.400  Sum_probs=68.9

Q ss_pred             ccCCCcEEEEccCCccccccHHHHHHHHHHHhCC-------c--cEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCC
Q 018470          248 TTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGA-------E--CDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYA  318 (355)
Q Consensus       248 ~~~~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~-------e--V~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v  318 (355)
                      ...++++|.||+|++|+.+||.+|+++|++.|++       +  +++..+.|+|.|+.||+|+|++              
T Consensus        84 ~P~Gk~~I~VC~g~aC~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~ClG~C~~AP~~~Vn~--------------  149 (169)
T PRK07571         84 KPSGEHTCVVCTGTACYVKGSAAILEDLENELGIKAGETTADGKLSLLTARCLGACGIAPAVVFDG--------------  149 (169)
T ss_pred             CCCCCEEEEEcCChHHHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEEEecccCccCCCCeEEECC--------------
Confidence            4568999999999999999999999999999973       2  4899999999999999999976              


Q ss_pred             CCCCceeeecCCcchHHHHHHHH
Q 018470          319 KPSINSLCIGVGLEDVDMILANI  341 (355)
Q Consensus       319 ~~p~n~lY~~VtpEDVdeIVe~h  341 (355)
                           .+|++++++++++||++|
T Consensus       150 -----~~~~~lt~e~v~~il~~~  167 (169)
T PRK07571        150 -----KVAGKQTPESVLEKVQGW  167 (169)
T ss_pred             -----EEeCCCCHHHHHHHHHHH
Confidence                 679999999999999987

>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity

Probab=99.50  E-value=6.7e-14  Score=114.61  Aligned_cols=78  Identities=18%  Similarity=0.163  Sum_probs=67.8

Q ss_pred             cEEEEccC----CccccccHHHHHHHHHHHhC----CccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCCCCCCce
Q 018470          253 KRIEVCMG----GKCKKLGAGALLEEFERKAG----AECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSINS  324 (355)
Q Consensus       253 ~rI~VC~G----t~C~ksGS~aVLeafee~Lg----~eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v~~p~n~  324 (355)
                      .+|+||++    ..|...| ..|+++|++.+.    .++.+..++|+|.|..||||+|||-.+               ++
T Consensus         2 ~~ilVCth~rrd~~C~~~g-~~l~~~l~~~l~~~~~~~v~v~~~~clG~c~~gp~vvvyP~~~---------------g~   65 (97)
T cd03062           2 PLVLVCTHGKRDKRCGICG-PPLAAELRAELPEHGPGGVRVWEVSHVGGHKFAGNVIIYPKGD---------------GI   65 (97)
T ss_pred             CEEEEeCCCCCCcChhhcC-HHHHHHHHHHHHHhCCCceEEEeCCcCCccCcCCEEEEEeCCC---------------ee
Confidence            58999996    5698888 699999999985    358999999999999999999999211               39


Q ss_pred             eeecCCcchHHHHHHHHhcCCC
Q 018470          325 LCIGVGLEDVDMILANILGKDM  346 (355)
Q Consensus       325 lY~~VtpEDVdeIVe~hlg~~~  346 (355)
                      ||+.|+|+||++||++|+..+.
T Consensus        66 wy~~v~p~~v~~Iv~~hl~~g~   87 (97)
T cd03062          66 WYGRVTPEHVPPIVDRLILGGK   87 (97)
T ss_pred             EEeecCHHHHHHHHHHHhcCCc
Confidence            9999999999999999997754

The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.

>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]

Probab=99.48  E-value=7.2e-14  Score=125.26  Aligned_cols=79  Identities=25%  Similarity=0.528  Sum_probs=70.1

Q ss_pred             cccCCCcEEEEccCCccccccHHHHHHHHHHHhCC---------ccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccC
Q 018470          247 TTTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGA---------ECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGY  317 (355)
Q Consensus       247 ~~~~~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~---------eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~  317 (355)
                      ....++++|.||+|+.|+.+||.+|+++|++.+++         .+++.++.|+|.|+.||+|+|++             
T Consensus        72 ~~P~Gr~~i~VC~~t~C~l~Gs~~l~~~l~~~lgi~~gett~DG~ftl~~v~ClGaC~~AP~vmind-------------  138 (160)
T COG1905          72 LKPVGRHHIRVCTGTACHLKGSEALLKALEKKLGIKPGETTADGKFTLEPVECLGACGQAPVVMIND-------------  138 (160)
T ss_pred             cCcCCCeEEEEeCCcHHhhcChHHHHHHHHHHhCCCCCCcCCCCeEEEeeeeeecccccCCEEEECC-------------
Confidence            34567999999999999999999999999999983         24899999999999999999987             


Q ss_pred             CCCCCceeeecCCcchHHHHHHHHhcC
Q 018470          318 AKPSINSLCIGVGLEDVDMILANILGK  344 (355)
Q Consensus       318 v~~p~n~lY~~VtpEDVdeIVe~hlg~  344 (355)
                            .+|+++|+|.|++||+++..+
T Consensus       139 ------~~~~~lt~e~l~eil~~~~~~  159 (160)
T COG1905         139 ------DVYGRLTPEKLEEILEKLKAK  159 (160)
T ss_pred             ------chhccCCHHHHHHHHHHHhcC
Confidence                  358889999999999987643

>PRK12373 NADH dehydrogenase subunit E; Provisional

Probab=99.33  E-value=3.1e-12  Score=128.38  Aligned_cols=80  Identities=20%  Similarity=0.368  Sum_probs=71.0

Q ss_pred             ccCCC-cEEEEccCCccccccHHHHHHHHHHHhCC-------c--cEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccC
Q 018470          248 TTTRT-KRIEVCMGGKCKKLGAGALLEEFERKAGA-------E--CDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGY  317 (355)
Q Consensus       248 ~~~~~-~rI~VC~Gt~C~ksGS~aVLeafee~Lg~-------e--V~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~  317 (355)
                      ...++ ++|.||+|+.|+.+||.+|+++|++.|++       +  +++..+.|||.|..||+|+|+.             
T Consensus        85 ~P~Gk~~~I~VC~~t~C~l~Ga~~ll~~le~~Lgik~GeTT~DG~FTLe~veCLGaC~~APv~~Ind-------------  151 (400)
T PRK12373         85 QPVGTRAHIQVCGTTPCMLRGSEALMAVCKSKIHAHPHELNADGTLSWEEVECLGACVNAPMVQIGK-------------  151 (400)
T ss_pred             cCCCCceEEEEcCChHHHhCChHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCCeEEECC-------------
Confidence            34565 79999999999999999999999999974       2  4899999999999999999976             


Q ss_pred             CCCCCceeeecCCcchHHHHHHHHhcCCC
Q 018470          318 AKPSINSLCIGVGLEDVDMILANILGKDM  346 (355)
Q Consensus       318 v~~p~n~lY~~VtpEDVdeIVe~hlg~~~  346 (355)
                            .+|.+++++++++||+++..+..
T Consensus       152 ------~~y~~LTpe~v~~IL~~l~ag~~  174 (400)
T PRK12373        152 ------DYYEDLTPERLEEIIDAFAAGKG  174 (400)
T ss_pred             ------EEeCCCCHHHHHHHHHHHhCCCC
Confidence                  67999999999999999976543

>COG3411 Ferredoxin [Energy production and conversion]

Probab=99.11  E-value=7.5e-11  Score=92.07  Aligned_cols=48  Identities=31%  Similarity=0.461  Sum_probs=42.9

Q ss_pred             ccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCCCCCCceeeecCCcchHHHHHHHHhcCCC
Q 018470          282 ECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPSINSLCIGVGLEDVDMILANILGKDM  346 (355)
Q Consensus       282 eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v~~p~n~lY~~VtpEDVdeIVe~hlg~~~  346 (355)
                      .+.+..+||||.|..||+|.|||  ++               +||.+|+++|+++||+.|+.++.
T Consensus         2 ~i~~t~tgCl~~C~~gPvl~vYp--eg---------------vWY~~V~p~~a~rIv~~hl~~Gr   49 (64)
T COG3411           2 SIRVTRTGCLGVCQDGPVLVVYP--EG---------------VWYTRVDPEDARRIVQSHLLGGR   49 (64)
T ss_pred             ceEEeecchhhhhccCCEEEEec--CC---------------eeEeccCHHHHHHHHHHHHhCCC
Confidence            35789999999999999999999  33               99999999999999999987543

>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]

Probab=99.03  E-value=4.3e-10  Score=104.64  Aligned_cols=79  Identities=16%  Similarity=0.424  Sum_probs=70.5

Q ss_pred             ccCCCcEEEEccCCccccccHHHHHHHHHHHhCCc---------cEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCC
Q 018470          248 TTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGAE---------CDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYA  318 (355)
Q Consensus       248 ~~~~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~e---------V~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v  318 (355)
                      ...++++|.||+.+.|..+|++.+++++++.++++         .+|..++|||.|-+||+|.|++              
T Consensus       109 ~p~gKy~v~VC~ttpC~lrg~d~i~ea~~k~lgi~~Gett~d~~Ftl~e~eClGaCvnaPmi~IND--------------  174 (233)
T KOG3196|consen  109 KPVGKYHVQVCTTTPCMLRGSDDILEACKKQLGIKVGETTKDGLFTLEEVECLGACVNAPMIAIND--------------  174 (233)
T ss_pred             cCCCCceEEEecCcHHhhhccHHHHHHHHHHhCccccccccccceeeecchhhhhhccCceeeecc--------------
Confidence            34678999999999999999999999999999853         2899999999999999999986              


Q ss_pred             CCCCceeeecCCcchHHHHHHHHhcCC
Q 018470          319 KPSINSLCIGVGLEDVDMILANILGKD  345 (355)
Q Consensus       319 ~~p~n~lY~~VtpEDVdeIVe~hlg~~  345 (355)
                           .+|..+|++++.+|++.+-.+.
T Consensus       175 -----~yyedlt~k~l~eIle~L~~~k  196 (233)
T KOG3196|consen  175 -----DYYEDLTPKKLVEILEDLKAGK  196 (233)
T ss_pred             -----hhhccCCHHHHHHHHHHHhcCC
Confidence                 4699999999999999986543

>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity []

Probab=97.89  E-value=4.3e-05  Score=69.98  Aligned_cols=81  Identities=21%  Similarity=0.208  Sum_probs=64.9

Q ss_pred             CCCcEEEEccCC----ccccccHHHHHHHHHHHhCCc----cEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCCCCC
Q 018470          250 TRTKRIEVCMGG----KCKKLGAGALLEEFERKAGAE----CDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKPS  321 (355)
Q Consensus       250 ~~~~rI~VC~Gt----~C~ksGS~aVLeafee~Lg~e----V~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v~~p  321 (355)
                      ..+..|+||+.+    .|... +..|.++|++.+...    ..|-.+..+|-+.-+|||+||.  .           ..|
T Consensus       130 ~~~~~iLVCtHg~RD~rCg~~-Gp~l~~~l~~~~~~~~l~~~~V~~iSHiGGHkfAgNvIiy~--~-----------~~p  195 (230)
T PF06999_consen  130 PDKPLILVCTHGKRDKRCGIL-GPPLARELEKELRERGLSRDRVWEISHIGGHKFAGNVIIYS--K-----------PKP  195 (230)
T ss_pred             CCCCEEEEcCCCCcCCchhcc-cHHHHHHHHHHhhhcCCccceEEEecccccceecCeEEEEe--c-----------CCC
Confidence            467889999996    57777 578999999998632    2399999999999999999991  0           012


Q ss_pred             CceeeecCCcchHHHHHHHHhcC
Q 018470          322 INSLCIGVGLEDVDMILANILGK  344 (355)
Q Consensus       322 ~n~lY~~VtpEDVdeIVe~hlg~  344 (355)
                      ...||+.|+|++|..||+++..+
T Consensus       196 ~g~wyGrv~p~~v~~iv~~t~~~  218 (230)
T PF06999_consen  196 DGIWYGRVTPEDVEGIVDATILD  218 (230)
T ss_pred             cEEEEEeeCHHHHHHHHHHHHhC
Confidence            34999999999999999995443

>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins

Probab=97.58  E-value=0.0002  Score=61.62  Aligned_cols=70  Identities=21%  Similarity=0.366  Sum_probs=57.6

Q ss_pred             EEEccCCccccc---------cHHHHHHHHHHHhC-----CccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCCCC
Q 018470          255 IEVCMGGKCKKL---------GAGALLEEFERKAG-----AECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAKP  320 (355)
Q Consensus       255 I~VC~Gt~C~ks---------GS~aVLeafee~Lg-----~eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v~~  320 (355)
                      |+||+  .|+..         +++.|+++|++.+.     .+++|.++.||..|..|=+|.+... +.       +    
T Consensus         1 l~VC~--tCr~~~~~~~~~~~~G~~L~~aL~~~~~~~~~~~~v~v~~v~CL~~C~r~CtVA~~~~-gK-------~----   66 (116)
T PF07845_consen    1 LFVCT--TCRRSGEDPEDGPRPGAALLDALRAALADAPLPDGVEVRPVECLSACDRPCTVALQAP-GK-------W----   66 (116)
T ss_pred             CEEeC--CCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCceEEEeccHHhcCCCceEEEEEcC-CC-------c----
Confidence            56785  66665         89999999999863     4689999999999999999999851 32       2    


Q ss_pred             CCceeeecCCc-chHHHHHHH
Q 018470          321 SINSLCIGVGL-EDVDMILAN  340 (355)
Q Consensus       321 p~n~lY~~Vtp-EDVdeIVe~  340 (355)
                        +.+|+++++ ++++.||+-
T Consensus        67 --tYlfGdl~p~~~a~~il~~   85 (116)
T PF07845_consen   67 --TYLFGDLDPDEDAEDILAF   85 (116)
T ss_pred             --EEEEecCCcccCHHHHHHH
Confidence              478999999 999999963

The region in question is approximately 130 amino acids long.

>COG5469 Predicted metal-binding protein [Function unknown]

Probab=96.42  E-value=0.012  Score=52.78  Aligned_cols=76  Identities=18%  Similarity=0.372  Sum_probs=60.3

Q ss_pred             ccCCCcEEEEccCCcccc----------ccHHHHHHHHHHHhC-----CccEEEeecCCCCCCCCCeEEEeCCCCCChhh
Q 018470          248 TTTRTKRIEVCMGGKCKK----------LGAGALLEEFERKAG-----AECDVSMCKCMGKCRDGPNLRVSNSHDGDSAI  312 (355)
Q Consensus       248 ~~~~~~rI~VC~Gt~C~k----------sGS~aVLeafee~Lg-----~eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~  312 (355)
                      ....+|+++||.  .|+.          +++..|++.+++...     .+.++.++.||..|..|=+|.+... ++    
T Consensus        13 ~~~~~htlfVCk--sC~~~~~~~~~~~p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl~~C~r~c~vA~~~~-~k----   85 (143)
T COG5469          13 NGMPKHTLFVCK--SCRDVSQEGKENGPSDGSILLDKLQELAQEWEIAHEFEIQTVECLAACNRGCVVAFSGP-GK----   85 (143)
T ss_pred             cccCceEEEEec--cccccccCCccCCCCcHHHHHHHHHHHHhhhhhhccceeeeeHhhhhcCCCeEEEEecC-CC----
Confidence            467889999997  5543          467889999997653     4668999999999999998888752 22    


Q ss_pred             hhccCCCCCCceeeecCCcch-HHHHHH
Q 018470          313 RIQGYAKPSINSLCIGVGLED-VDMILA  339 (355)
Q Consensus       313 ~~~~~v~~p~n~lY~~VtpED-VdeIVe  339 (355)
                         +      ..+|++++|+| ...||+
T Consensus        86 ---~------sYLFgdL~p~d~a~dLl~  104 (143)
T COG5469          86 ---P------SYLFGDLTPDDSASDLLE  104 (143)
T ss_pred             ---c------eEEEccCCccccHHHHHH
Confidence               1      37899999999 888886

>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families

Probab=95.60  E-value=0.044  Score=44.60  Aligned_cols=70  Identities=17%  Similarity=0.346  Sum_probs=50.6

Q ss_pred             cEEEEccCCccccccHHHHHHHHHHHhCCccEEEeecCCCCCCC---CCeEEEeCCCCCChhhhhccCCCCCCceeeecC
Q 018470          253 KRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMGKCRD---GPNLRVSNSHDGDSAIRIQGYAKPSINSLCIGV  329 (355)
Q Consensus       253 ~rI~VC~Gt~C~ksGS~aVLeafee~Lg~eV~V~~tGCLG~Cg~---GPnVrV~pe~dg~~~~~~~~~v~~p~n~lY~~V  329 (355)
                      ..|++|.+.  ...|+..+++.|++.  .++.|...||+|.|+.   .|=..|++                   .+-..-
T Consensus         3 piVefC~~N--l~~g~~~~~~~Le~~--p~~~Vie~gCl~~Cg~C~~~pFAlVnG-------------------~~V~A~   59 (78)
T PF07293_consen    3 PIVEFCVSN--LASGTDQVYEKLEKD--PDIDVIEYGCLSYCGPCAKKPFALVNG-------------------EIVAAE   59 (78)
T ss_pred             ceEEEcccC--chhhhHHHHHHHhcC--CCccEEEcChhhhCcCCCCCccEEECC-------------------EEEecC
Confidence            468899854  567999999999864  6778999999988764   78888876                   223345


Q ss_pred             CcchHHHHHHHHhcCC
Q 018470          330 GLEDVDMILANILGKD  345 (355)
Q Consensus       330 tpEDVdeIVe~hlg~~  345 (355)
                      |+|+.-+-|.+++.+.
T Consensus        60 t~eeL~~kI~~~i~e~   75 (78)
T PF07293_consen   60 TAEELLEKIKEKIEEN   75 (78)
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            6666666666666553

Members contain four highly conserved cysteine residues and their function is unknown.

>PRK13669 hypothetical protein; Provisional

Probab=93.66  E-value=0.27  Score=40.32  Aligned_cols=48  Identities=27%  Similarity=0.506  Sum_probs=37.8

Q ss_pred             cEEEEccCCccccccHHHHHHHHHHHhCCccEEEeecCCCCCC---CCCeEEEeC
Q 018470          253 KRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMGKCR---DGPNLRVSN  304 (355)
Q Consensus       253 ~rI~VC~Gt~C~ksGS~aVLeafee~Lg~eV~V~~tGCLG~Cg---~GPnVrV~p  304 (355)
                      ..|++|.+.  ..+|+..+++.|++  ..++.|...||++.|+   .+|=..|++
T Consensus         3 piVEfC~sN--l~~G~~~~~~~Le~--dP~~dVie~gCls~CG~C~~~~FAlVng   53 (78)
T PRK13669          3 PIVEFCVSN--LASGSQAAFEKLEK--DPNLDVLEYGCLGYCGICSEGLFALVNG   53 (78)
T ss_pred             ceeeehhcc--hhhhHHHHHHHHHh--CCCceEEEcchhhhCcCcccCceEEECC
Confidence            358889876  46789988888854  4678899999998775   578888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 9e-06
 Identities = 45/396 (11%), Positives = 96/396 (24%), Gaps = 156/396 (39%)

Query: 37  ERTRNSFRRLSS-------RFSDCGHQQYY---VSP-RKETKKKEKEKSSEIKSVRKKLK 85
             T   F  L S       +F +   +  Y   +SP + E ++        I   R +L 
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQRDRL- 119

Query: 86  FMKRLSSDLLPLEAFGNEDASSLRNEERISEAVQVLQAQLLQLRSEQKELKKMMKEKKAQ 145
                         + +    +  N  R+ +    L+  LL+LR  +             
Sbjct: 120 --------------YNDNQVFAKYNVSRL-QPYLKLRQALLELRPAKN------------ 152

Query: 146 I---------KTTM----------KERKGNR----KSGSSSSSSS------------ESS 170
           +         KT +          + +   +       + +S  +            + +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 171 DSDNGDVIDTIPLRSNILKLSENIEVQKEIIVPALAKSATSLIQQDKLEDCC-------F 223
            +   D    I LR + ++      ++ +     L      L+    L +         F
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL------LV----LLNVQNAKAWNAF 262

Query: 224 RSGGECRNLNGRSNDQGYGIVERTTTTRTKRI----------EVCMGGKCKKLGAGALLE 273
                C+ L                TTR K++           + +      L    +  
Sbjct: 263 --NLSCKIL---------------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 274 EFERKAGAECD---VSMCKCM--------GKCRDGPNLRVSNSHDGDSAIRIQGYAKPSI 322
              +            +               RDG                   +   + 
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA-------------TWDNWKHVNC 352

Query: 323 NSL------CIGVGLEDVDM-----ILANILGKDMN 347
           + L       + V LE  +       L+ +     +
Sbjct: 353 DKLTTIIESSLNV-LEPAEYRKMFDRLS-VFPPSAH 386

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A Length = 110

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 6/57 (10%)

Query: 252 TKRIEVCMGGKCKKLGAGALLEEFERKAGAE------CDVSMCKCMGKCRDGPNLRV 302
             R      G C + G+  + + F  K   +        ++   CM     GP + V
Sbjct: 11  QDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVV 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
2auv_A	85	Potential NAD-reducing hydrogenase subunit; thiore	99.74
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	99.73
3i9v_2	181	NADH-quinone oxidoreductase subunit 2; electron tr	99.64

>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}

Probab=99.74  E-value=6.5e-19  Score=137.72  Aligned_cols=74  Identities=26%  Similarity=0.448  Sum_probs=67.9

Q ss_pred             cCCCcEEEEccCCccccccHHHHHHHHHHHhCC---------ccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCCC
Q 018470          249 TTRTKRIEVCMGGKCKKLGAGALLEEFERKAGA---------ECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAK  319 (355)
Q Consensus       249 ~~~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~---------eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v~  319 (355)
                      +.++++|+||+|++|+.+||.+|+++|++.++.         ++++..++|||.|..||+|+|++               
T Consensus         3 p~g~~~I~VC~g~~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~ClG~C~~~P~v~V~~---------------   67 (85)
T 2auv_A            3 PKGKYPISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGE---------------   67 (85)
T ss_dssp             SCCSBCEECCCCHHHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSSSSCTTSCCCEEGG---------------
T ss_pred             CCCCEEEEECCCchHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCccCcCCCCCEEEECC---------------
Confidence            467899999999999999999999999999862         47899999999999999999974               


Q ss_pred             CCCceeeecCCcchHHHHHHHH
Q 018470          320 PSINSLCIGVGLEDVDMILANI  341 (355)
Q Consensus       320 ~p~n~lY~~VtpEDVdeIVe~h  341 (355)
                          .||.+|+++||++||++|
T Consensus        68 ----~~y~~vt~e~v~~il~~~   85 (85)
T 2auv_A           68 ----KVYGNVTPGQVKKILAEY   85 (85)
T ss_dssp             ----GCCCCSSSSHHHHHHHHC
T ss_pred             ----EEECCCCHHHHHHHHHhC
Confidence                789999999999999875

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A

Probab=99.73  E-value=3.4e-18  Score=139.81  Aligned_cols=78  Identities=28%  Similarity=0.434  Sum_probs=70.3

Q ss_pred             CCcEEEEccC--------CccccccHHHHHHHHHHHhCCc------cEEEeecCCCCCCCCCeEEEeCCCCCChhhhhcc
Q 018470          251 RTKRIEVCMG--------GKCKKLGAGALLEEFERKAGAE------CDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQG  316 (355)
Q Consensus       251 ~~~rI~VC~G--------t~C~ksGS~aVLeafee~Lg~e------V~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~  316 (355)
                      ++++|+||+|        ++|..+||.+|+++|++.++..      ++|..++|||.|..||+|+|+|  ++        
T Consensus         2 ~~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~ClG~C~~gP~v~V~P--~~--------   71 (110)
T 1m2d_A            2 EFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYP--DG--------   71 (110)
T ss_dssp             -CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEET--TT--------
T ss_pred             CceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCCCccCCCCEEEEEe--CC--------
Confidence            5789999999        8999999999999999988643      7999999999999999999998  33        


Q ss_pred             CCCCCCceeeecCCcchHHHHHHHHhcCC
Q 018470          317 YAKPSINSLCIGVGLEDVDMILANILGKD  345 (355)
Q Consensus       317 ~v~~p~n~lY~~VtpEDVdeIVe~hlg~~  345 (355)
                             .||++|+++||++||++|+.++
T Consensus        72 -------~~y~~vt~e~v~~il~~~l~~g   93 (110)
T 1m2d_A           72 -------VWYGQVKPEDVDEIVEKHLKGG   93 (110)
T ss_dssp             -------EEECSCCGGGHHHHHHHTTTTS
T ss_pred             -------EEEecCCHHHHHHHHHHHHHCC
Confidence                   8999999999999999998554

>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*

Probab=99.64  E-value=2.1e-16  Score=141.30  Aligned_cols=79  Identities=23%  Similarity=0.434  Sum_probs=70.6

Q ss_pred             ccCCCcEEEEccCCccccccHHHHHHHHHHHhCC---------ccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCC
Q 018470          248 TTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGA---------ECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYA  318 (355)
Q Consensus       248 ~~~~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~---------eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v  318 (355)
                      ...++++|.||+|++|+.+||.+|+++|++.|+.         .+++..++|||.|..||+|+|++              
T Consensus        73 ~P~gk~~I~VC~gt~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~ClG~C~~gPvv~V~~--------------  138 (181)
T 3i9v_2           73 VPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVND--------------  138 (181)
T ss_dssp             SCCCSEEEEEECSHHHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEECSS--------------
T ss_pred             CCCCCEEEEECCCchhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCCCccCCCCEEEECC--------------
Confidence            4567899999999999999999999999999974         25899999999999999999964              


Q ss_pred             CCCCce-eeecCCcchHHHHHHHHhcCC
Q 018470          319 KPSINS-LCIGVGLEDVDMILANILGKD  345 (355)
Q Consensus       319 ~~p~n~-lY~~VtpEDVdeIVe~hlg~~  345 (355)
                           . ||.+|++++|++||+++.++.
T Consensus       139 -----~~~y~~vt~e~v~~Il~~l~~g~  161 (181)
T 3i9v_2          139 -----EPYVECVTRARLEALLAGLRAGK  161 (181)
T ss_dssp             -----SCCBCCCCHHHHHHHHHHHHTTC
T ss_pred             -----EEEEcCCCHHHHHHHHHHHHcCC
Confidence                 4 899999999999999966543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	355
d1m2da_	101	c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin	0.003

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 6/57 (10%)

Query: 252 TKRIEVCMGGKCKKLGAGALLEEFERKAGAE------CDVSMCKCMGKCRDGPNLRV 302
             R      G C + G+  + + F  K   +        ++   CM     GP + V
Sbjct: 9   QDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVV 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	355
d1m2da_	101	Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolic	99.74
d2fug21	178	NADH-quinone oxidoreductase chain 2, NQO2 {Thermus	99.34

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.74  E-value=1.5e-18  Score=139.00  Aligned_cols=77  Identities=27%  Similarity=0.393  Sum_probs=69.6

Q ss_pred             cEEEEccCC--------ccccccHHHHHHHHHHHhC------CccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCC
Q 018470          253 KRIEVCMGG--------KCKKLGAGALLEEFERKAG------AECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYA  318 (355)
Q Consensus       253 ~rI~VC~Gt--------~C~ksGS~aVLeafee~Lg------~eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v  318 (355)
                      +||+||+++        +|.++||.+|+++|++++.      .++.+..+||||.|..||+|+|+|  ++          
T Consensus         2 rHi~VC~~~r~~~~~~~~C~~~G~~~v~~~l~~~l~~~~~~~~~v~v~~tgClG~C~~gP~v~i~P--~~----------   69 (101)
T d1m2da_           2 KHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYP--DG----------   69 (101)
T ss_dssp             EEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEET--TT----------
T ss_pred             CEEEEeCCCCCCCCCCCcchhcCHHHHHHHHHHHhhhhcCCCCcEEEEEccCCcccCCCceEEEcC--Cc----------
Confidence            589999996        5999999999999999874      367999999999999999999999  33          


Q ss_pred             CCCCceeeecCCcchHHHHHHHHhcCCC
Q 018470          319 KPSINSLCIGVGLEDVDMILANILGKDM  346 (355)
Q Consensus       319 ~~p~n~lY~~VtpEDVdeIVe~hlg~~~  346 (355)
                           +||.+|+++||++||++|+.++.
T Consensus        70 -----~~Y~~v~~e~v~~Iv~~hl~~g~   92 (101)
T d1m2da_          70 -----VWYGQVKPEDVDEIVEKHLKGGE   92 (101)
T ss_dssp             -----EEECSCCGGGHHHHHHHTTTTSC
T ss_pred             -----cEEecCCHHHHHHHHHHHHHCCc
Confidence                 89999999999999999987764

>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: NQO2-like
domain: NADH-quinone oxidoreductase chain 2, NQO2
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=7.1e-13  Score=116.51  Aligned_cols=80  Identities=23%  Similarity=0.428  Sum_probs=69.1

Q ss_pred             cccCCCcEEEEccCCccccccHHHHHHHHHHHhCCc---------cEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccC
Q 018470          247 TTTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGAE---------CDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGY  317 (355)
Q Consensus       247 ~~~~~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~e---------V~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~  317 (355)
                      ....++++|.||+|+.|+.+||.+|++++++.++++         ++|..+.|||.|..||+|+|+.+            
T Consensus        70 ~~p~gk~~i~VC~~~~C~~~G~~~l~~~l~~~Lgi~~gett~Dg~ftle~v~ClG~C~~APa~~In~~------------  137 (178)
T d2fug21          70 FVPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDE------------  137 (178)
T ss_dssp             SSCCCSEEEEEECSHHHHTTTHHHHHHHHHHHHCCCTTCCCTTSCEEEEEESCCSCTTSSSCEECSSS------------
T ss_pred             ccccccceeEecCchhhhhccchhhHHHHHhhcccccccccCCCCEEEEEeeccCccCCCCeEEEcCE------------
Confidence            356778999999999999999999999999999842         48999999999999999999751            


Q ss_pred             CCCCCceeeecCCcchHHHHHHHHhcC
Q 018470          318 AKPSINSLCIGVGLEDVDMILANILGK  344 (355)
Q Consensus       318 v~~p~n~lY~~VtpEDVdeIVe~hlg~  344 (355)
                            +++.+++++.++.||+++-.+
T Consensus       138 ------~y~~~lt~e~~~~il~~lr~~  158 (178)
T d2fug21         138 ------PYVECVTRARLEALLAGLRAG  158 (178)
T ss_dssp             ------SBCCSCCHHHHHHHHHHHHTT
T ss_pred             ------EecCCCCHHHHHHHHHHHHcC
Confidence                  334679999999999997533