Citrus Sinensis ID: 018481

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
MSQNNVQLDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKENGFSR
cccccccccccccccccccccEEEEEcccccEEEEEEEccccEEEEcccEEEcccccccccccEEEEEccccccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHccccccccccHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHcccccEEEEEcccccccHHHHHHccccHHHHHHcEEEccccccccccccccccccHHHHHccccHHHHccccccHHccccccccccccHHHcccccccccccccccccccccHHHHHHHHHHcccc
cccccccccccccccEEccccEEEEEEccccEEEEEEEEcccEEEEEEEEEEccHHccccccEEEEEEcccccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcEEEEccccHHHHHHHHHHccHHHHHHHcHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHccccEEEEEEEcccccccHHHHHHccccHHHHHHHccccHHHHHHHccccccccccccccHHHccccccccHHccHHHcccccccccccEEEcccccccccccccccccccccHHHHHHHHHccccc
msqnnvqldpirnaqltwEGCSVlldindgdRLVFARltsgstlkignkncslqpligcpfgslfqvdngkegpnlsrvipsteddvqekedaqisgefrdnraivddnkaqclsgediDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKkqkkyapkvllrrpFARSICEAYFkknparigFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAErlggtgyvcntcigdslypmDIVRIFNFSNEICKSIVRASvsdvtsqsetseqsDQLESACNMEiqsneqksssvsmedislssengvSDLILEanhspvnkiskshkvgEKASQETLKLWKENGFSR
msqnnvqldpirnaQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSrvipsteddvqeKEDAqisgefrdnraivddnkaqclsgediDEMRRQGATGEEIVEALIansatfekktsfsqekyklkkqkkyapkvllrrpFARSICEAYfkknpariGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHspvnkiskshkvgekasqetlklwkengfsr
MSQNNVQLDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEkyklkkqkkyapkvllRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRAsvsdvtsqsetseqsdQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKENGFSR
**********IRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVD***************************************************************IVEALIAN********************KKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRA*****************************************************************************************
***************LTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDV******************VDDNKAQCLSGEDID***********IV*ALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRASVSDVT***********************************************************************************
MSQNNVQLDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPST**********QISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRAS******************SACNME******************SSENGVSDLILEANHSPVNK**********ASQETLKLWKENGFSR
***********RNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPS****************************AQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRASVSDVTSQS********************************************************************************
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MSQNNVQLDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKENGFSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query355 2.2.26 [Sep-21-2011]
Q54UB1 521 tRNA (adenine(58)-N(1))-m yes no 0.678 0.462 0.387 1e-35
Q2T9V5 497 tRNA (adenine(58)-N(1))-m yes no 0.574 0.410 0.340 9e-25
Q9UJA5 497 tRNA (adenine(58)-N(1))-m yes no 0.574 0.410 0.344 4e-24
Q8CE96 497 tRNA (adenine(58)-N(1))-m yes no 0.583 0.416 0.343 6e-24
P0CS06 560 tRNA (adenine(58)-N(1))-m yes no 0.670 0.425 0.312 3e-21
P0CS07 560 tRNA (adenine(58)-N(1))-m N/A no 0.670 0.425 0.312 3e-21
Q6CF35 487 tRNA (adenine(58)-N(1))-m yes no 0.614 0.447 0.300 8e-21
Q6BKK7473 tRNA (adenine(58)-N(1))-m yes no 0.639 0.479 0.278 3e-18
Q5A6Q4453 tRNA (adenine(58)-N(1))-m N/A no 0.512 0.401 0.314 5e-18
Q9HGL4 462 tRNA (adenine(58)-N(1))-m yes no 0.588 0.452 0.292 1e-17
>sp|Q54UB1|TRM6_DICDI tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 OS=Dictyostelium discoideum GN=trmt6 PE=3 SV=1 Back     alignment and function desciption
 Score =  150 bits (379), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 146/245 (59%), Gaps = 4/245 (1%)

Query: 19  EGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSR 78
           EG  V+LDIN+G++    ++  GS +KIG K   +  +IG  + S FQV N K    L R
Sbjct: 37  EGDHVILDINNGEKFSVIKVKLGSKVKIGKKQILINSIIGESYYSSFQVSNEKN--TLER 94

Query: 79  VIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIA 138
           +     DD +     +++    DNR +  +N AQ L+ EDI+EM+++G     I++ ++ 
Sbjct: 95  ITQKEIDD-RLNNLVELNQNDADNRNLDQNNTAQKLTQEDINEMKQKGTDSNTIIKTIVE 153

Query: 139 NSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSL 198
           NS +F+ KTSFSQ KY  KK KKY+  V + +P  +S+ EAY+KK+  +I  LR D    
Sbjct: 154 NSESFKTKTSFSQIKYLKKKIKKYSTIVKIIKPTLKSLTEAYYKKDSRKICGLRFDSFGQ 213

Query: 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNE 258
           LL++GN+ ANS VLVV+   GL+TG++AER+ G G + +  IG     + IV  F F+ +
Sbjct: 214 LLTLGNIRANSQVLVVETCMGLVTGSIAERMNGQGTILSAYIGKG-PSLSIVNNFGFNTD 272

Query: 259 ICKSI 263
           +  +I
Sbjct: 273 VLNTI 277
Substrate-binding subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
Dictyostelium discoideum (taxid: 44689)
>sp|Q2T9V5|TRM6_BOVIN tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Bos taurus GN=TRMT6 PE=2 SV=1 Back     alignment and function description
>sp|Q9UJA5|TRM6_HUMAN tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Homo sapiens GN=TRMT6 PE=1 SV=1 Back     alignment and function description
>sp|Q8CE96|TRM6_MOUSE tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Mus musculus GN=Trmt6 PE=1 SV=1 Back     alignment and function description
>sp|P0CS06|TRM6_CRYNJ tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=TRM6 PE=3 SV=1 Back     alignment and function description
>sp|P0CS07|TRM6_CRYNB tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=TRM6 PE=3 SV=1 Back     alignment and function description
>sp|Q6CF35|TRM6_YARLI tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TRM6 PE=3 SV=1 Back     alignment and function description
>sp|Q6BKK7|TRM6_DEBHA tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=TRM6 PE=3 SV=2 Back     alignment and function description
>sp|Q5A6Q4|TRM6_CANAL tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TRM6 PE=3 SV=1 Back     alignment and function description
>sp|Q9HGL4|TRM6_SCHPO tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gcd10 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
225458003 464 PREDICTED: tRNA (adenine-N(1)-)-methyltr 0.997 0.762 0.717 1e-144
255538914 514 translation initiation factor, putative 0.980 0.677 0.695 1e-137
356562401440 PREDICTED: tRNA (adenine-N(1)-)-methyltr 0.960 0.775 0.669 1e-129
224085855434 predicted protein [Populus trichocarpa] 0.960 0.785 0.658 1e-125
357438383 457 tRNA (adenine-N(1)-)-methyltransferase n 0.952 0.739 0.635 1e-123
356552066423 PREDICTED: tRNA (adenine-N(1)-)-methyltr 0.915 0.768 0.665 1e-122
449469893448 PREDICTED: tRNA (adenine(58)-N(1))-methy 0.974 0.772 0.646 1e-120
18406875446 translation initiation factor eIF-3 subu 0.966 0.769 0.611 1e-105
224062013387 predicted protein [Populus trichocarpa] 0.842 0.772 0.642 1e-105
297828295446 eukaryotic initiation factor 3 gamma sub 0.966 0.769 0.597 1e-103
>gi|225458003|ref|XP_002280127.1| PREDICTED: tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 [Vitis vinifera] gi|302142647|emb|CBI19850.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 262/365 (71%), Positives = 300/365 (82%), Gaps = 11/365 (3%)

Query: 1   MSQNNVQLDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCP 60
           MSQN++Q D I+N ++TWEGCSVLLDINDGDRLVFARL++ +TLKIGNKNCSLQPLIGCP
Sbjct: 1   MSQNSLQNDSIQNPRVTWEGCSVLLDINDGDRLVFARLSASATLKIGNKNCSLQPLIGCP 60

Query: 61  FGSLFQVDNGKEGPNLSRVIPSTE-DDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDI 119
           FGSLFQVDNG  GP LSRV PS E +D+QE +D Q+  E +DNRAIVD+NKAQ L+GEDI
Sbjct: 61  FGSLFQVDNGPRGPYLSRVTPSAEGNDLQETQDCQLKDEPKDNRAIVDNNKAQSLTGEDI 120

Query: 120 DEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEA 179
           DEMRRQGATG+EIVEALI+NSAT+EKKTSFSQEKY+LKKQKKY+P+VLLRRPF RSICEA
Sbjct: 121 DEMRRQGATGDEIVEALISNSATYEKKTSFSQEKYRLKKQKKYSPRVLLRRPFCRSICEA 180

Query: 180 YFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTC 239
           YFKK PARIGFLRVD LSLLLSM N+AA+SDVLVVDM GGLLTGAVAERLGGTGYVCN  
Sbjct: 181 YFKKYPARIGFLRVDTLSLLLSMANIAAHSDVLVVDMVGGLLTGAVAERLGGTGYVCNAY 240

Query: 240 IGDSLYPMDIVRIFNFSNEICKSIVRASVSDVTS-QSETSEQSDQLESACNMEIQSNEQK 298
           +GD+ YPMDIVRIFNFS+EICK IVR+ V  + S Q  TSEQ  Q +   N EIQSNEQ 
Sbjct: 241 LGDTPYPMDIVRIFNFSSEICKRIVRSPVDGLRSIQDGTSEQFFQHKGVSNSEIQSNEQM 300

Query: 299 SS------SVSMEDISLSSENGVSDLI---LEANHSPVNKISKSHKVGEKASQETLKLWK 349
           SS      S+S E+ +LSSENG+ DLI   + A+   V K  K+ K GE AS + + LWK
Sbjct: 301 SSQDSFPHSISTEETTLSSENGMLDLIPQMVTASPPQVAKTCKATKAGENASLDAINLWK 360

Query: 350 ENGFS 354
           ENGFS
Sbjct: 361 ENGFS 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255538914|ref|XP_002510522.1| translation initiation factor, putative [Ricinus communis] gi|223551223|gb|EEF52709.1| translation initiation factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356562401|ref|XP_003549460.1| PREDICTED: tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6-like [Glycine max] Back     alignment and taxonomy information
>gi|224085855|ref|XP_002307715.1| predicted protein [Populus trichocarpa] gi|222857164|gb|EEE94711.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357438383|ref|XP_003589467.1| tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 [Medicago truncatula] gi|355478515|gb|AES59718.1| tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356552066|ref|XP_003544392.1| PREDICTED: tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6-like [Glycine max] Back     alignment and taxonomy information
>gi|449469893|ref|XP_004152653.1| PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like [Cucumis sativus] gi|449521762|ref|XP_004167898.1| PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18406875|ref|NP_566054.1| translation initiation factor eIF-3 subunit P62 [Arabidopsis thaliana] gi|3386622|gb|AAC28552.1| expressed protein [Arabidopsis thaliana] gi|17473624|gb|AAL38275.1| unknown protein [Arabidopsis thaliana] gi|22136132|gb|AAM91144.1| unknown protein [Arabidopsis thaliana] gi|330255499|gb|AEC10593.1| translation initiation factor eIF-3 subunit P62 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224062013|ref|XP_002300711.1| predicted protein [Populus trichocarpa] gi|222842437|gb|EEE79984.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297828295|ref|XP_002882030.1| eukaryotic initiation factor 3 gamma subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297327869|gb|EFH58289.1| eukaryotic initiation factor 3 gamma subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
TAIR|locus:2043714446 AT2G45730 [Arabidopsis thalian 0.966 0.769 0.560 4.2e-95
DICTYBASE|DDB_G0281175 521 trmt6 "tRNA(m1A58)-methyltrans 0.678 0.462 0.355 2.8e-38
ZFIN|ZDB-GENE-051120-141 464 trmt6 "tRNA methyltransferase 0.481 0.368 0.346 3.2e-23
RGD|1308877 495 Trmt6 "tRNA methyltransferase 0.509 0.365 0.347 4.2e-23
UNIPROTKB|Q2T9V5 497 TRMT6 "tRNA (adenine(58)-N(1)) 0.791 0.565 0.290 4.3e-23
UNIPROTKB|F1P960 497 TRMT6 "Uncharacterized protein 0.487 0.348 0.347 7.1e-23
MGI|MGI:1914176 497 Trmt6 "tRNA methyltransferase 0.509 0.364 0.347 7.1e-23
UNIPROTKB|F1SBM2 497 TRMT6 "Uncharacterized protein 0.490 0.350 0.333 1.2e-22
UNIPROTKB|Q9UJA5 497 TRMT6 "tRNA (adenine(58)-N(1)) 0.487 0.348 0.347 2e-22
UNIPROTKB|F1NF40 484 TRMT6 "Uncharacterized protein 0.490 0.359 0.355 8.1e-22
TAIR|locus:2043714 AT2G45730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 199/355 (56%), Positives = 248/355 (69%)

Query:     1 MSQNNVQLDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCP 60
             MS++    DP  N +   EGCSVLLDINDGDRLVFARL+SG+ LKIGNKN SL+PLIG P
Sbjct:    10 MSEDKKPQDP--NPRFACEGCSVLLDINDGDRLVFARLSSGAILKIGNKNYSLKPLIGAP 67

Query:    61 FGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDID 120
             FGSLFQV+ G++G  LSR++P      QE     +  + RDNR IVD+N+AQ L+GE+I+
Sbjct:    68 FGSLFQVETGEDGSFLSRILPIK----QESNSNNVMDDSRDNREIVDNNEAQNLTGEEIE 123

Query:   121 EMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAY 180
              MRR+GA G+EI+EALIANS TF+KK   SQE                RRPFARSICEAY
Sbjct:   124 AMRREGAKGDEIIEALIANSKTFDKKFQLSQEKYKLKKQKKYAPKLLLRRPFARSICEAY 183

Query:   181 FKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240
             FKK PARIGFLRVD LSLLL+M NV A SDVLVVDM GGL+TGAVAERLGGTGYVCNT  
Sbjct:   184 FKKYPARIGFLRVDALSLLLTMANVTAYSDVLVVDMVGGLVTGAVAERLGGTGYVCNTYK 243

Query:   241 GDSLYPMDIVRIFNFSNEICKSIVRAXXXXXXXXXXXXXXXX-QLESACNMEIQSNEQKS 299
             G S YP+++VR+FNFS+++ K IV++                 Q E  C  E   NE  +
Sbjct:   244 GSSPYPVEMVRMFNFSDKVLKRIVQSSINELSSAKTASTEGNNQQEGVCKAENNINETAT 303

Query:   300 SSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKENGFS 354
             S V +E+IS+++E GV D+++     P +KI K+ K G KAS+ET+++W+ENGFS
Sbjct:   304 SDVMVEEISVTTEAGVVDIVV-----PESKIIKAAKAGAKASKETIEMWQENGFS 353
GO:0003743 "translation initiation factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006446 "regulation of translational initiation" evidence=ISS
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0006606 "protein import into nucleus" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
DICTYBASE|DDB_G0281175 trmt6 "tRNA(m1A58)-methyltransferase subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051120-141 trmt6 "tRNA methyltransferase 6 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1308877 Trmt6 "tRNA methyltransferase 6 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q2T9V5 TRMT6 "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P960 TRMT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1914176 Trmt6 "tRNA methyltransferase 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBM2 TRMT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UJA5 TRMT6 "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NF40 TRMT6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
pfam04189299 pfam04189, Gcd10p, Gcd10p family 1e-72
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family Back     alignment and domain information 
 Score =  227 bits (580), Expect = 1e-72
 Identities = 95/262 (36%), Positives = 141/262 (53%), Gaps = 9/262 (3%)

Query: 19  EGCSVLLDINDGDRLVFARLTSGSTLKIGN-KNCSLQPLIGCPFGSLFQVDN-------G 70
           EG  V+L     +RL   +L     + +G   +     +IG P+G+ F++D        G
Sbjct: 6   EGDHVIL-RLPSERLKIVKLQPNGKVSLGKFGSFPANDIIGLPYGTTFEIDEDKELRVIG 64

Query: 71  KEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGE 130
           +    L     S E D  + E  +IS   RDNR IVDD  +Q L+ E+I+ ++++GA+GE
Sbjct: 65  RVEVLLQLYPDSDETDSDDPETLEISESSRDNRNIVDDGSSQKLTMEEIEALKKEGASGE 124

Query: 131 EIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGF 190
           EI+E L+ NS TF  KT+FSQEKY  +K+KKY  +  + RP    + E Y +K+P +I  
Sbjct: 125 EIIEKLVENSETFHTKTAFSQEKYLKRKKKKYLKRFTVLRPSISLLAEYYIEKDPQKILD 184

Query: 191 LRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIV 250
           LR D L L+L++ NV      LVVD  GGLL  A+ ER+GG G +     G+    +D++
Sbjct: 185 LRFDTLGLILTLANVRPGGRYLVVDETGGLLVAAMLERMGGEGKIVQIHEGEHPPNLDLL 244

Query: 251 RIFNFSNEICKSIVRASVSDVT 272
           +  NF  E  KS+        T
Sbjct: 245 KYMNFPPEFLKSVEPIDAHLKT 266

eIF-3 is a multi-subunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit if eIF3. The Yeast protein Gcd10p has also been shown to be part of a complex with the methyltransferase Gcd14p that is involved in modifying tRNA. Length = 299

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 355
PF04189299 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 i 100.0
KOG1416 475 consensus tRNA(1-methyladenosine) methyltransferas 100.0
COG2519256 GCD14 tRNA(1-methyladenosine) methyltransferase an 99.63
KOG2915314 consensus tRNA(1-methyladenosine) methyltransferas 99.32
PF08704247 GCD14: tRNA methyltransferase complex GCD14 subuni 98.6
PF1480154 GCD14_N: tRNA methyltransferase complex GCD14 subu 97.76
PF01135209 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl 96.18
PRK13942212 protein-L-isoaspartate O-methyltransferase; Provis 95.45
TIGR00080215 pimt protein-L-isoaspartate(D-aspartate) O-methylt 94.79
KOG1661237 consensus Protein-L-isoaspartate(D-aspartate) O-me 94.25
COG2518209 Pcm Protein-L-isoaspartate carboxylmethyltransfera 93.78
PRK04266226 fibrillarin; Provisional 93.01
PRK13944205 protein-L-isoaspartate O-methyltransferase; Provis 93.0
PRK13943322 protein-L-isoaspartate O-methyltransferase; Provis 91.29
PLN02476278 O-methyltransferase 91.11
PRK00312212 pcm protein-L-isoaspartate O-methyltransferase; Re 91.07
PRK00377198 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; 88.14
TIGR00438188 rrmJ cell division protein FtsJ. 87.68
PLN02781234 Probable caffeoyl-CoA O-methyltransferase 85.93
TIGR02469124 CbiT precorrin-6Y C5,15-methyltransferase (decarbo 85.1
COG2242187 CobL Precorrin-6B methylase 2 [Coenzyme metabolism 84.91
TIGR01848107 PHA_reg_PhaR polyhydroxyalkanoate synthesis repres 84.14
PLN02589247 caffeoyl-CoA O-methyltransferase 82.62
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 82.21
PRK00274272 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 80.3
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps Back     alignment and domain information 
Probab=100.00  E-value=3.3e-82  Score=612.50  Aligned_cols=265  Identities=40%  Similarity=0.630  Sum_probs=236.5

Q ss_pred             CCcccCCCEEEEEecCCCeEEEEEEecCCEEEEcc-eeeeCCCccCCCCCcEEEEeCCCCCCCCcccCCCCc----ch--
Q 018481           14 AQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGN-KNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTE----DD--   86 (355)
Q Consensus        14 ~~~I~eGd~VlL~~~~g~~~~iv~l~~~~~i~lgK-~~f~l~~LIG~pyGstfEi~~~~~~~~~~~~~~~~~----~~--   86 (355)
                      +++|++||+|+|++++| .+++++|+|+++|+||| ++|++++|||+|||+||||.+++....+.......+    +.  
T Consensus         1 h~~I~~gd~Vil~~~~~-~~k~v~l~~~~~i~lGK~~sf~~~~lIG~pyg~tfEi~~~~~l~~v~~~~~~~~~~~~~~~~   79 (299)
T PF04189_consen    1 HSIIQEGDYVILRLPSG-NMKIVKLKPNKTISLGKFGSFPLNDLIGRPYGSTFEIQDDKKLRVVPRNELHAEKDPDDDEE   79 (299)
T ss_pred             CCCcCCCCEEEEEcCCC-cEEEEEECCCCEEEecCCCcccHHHhcCCCCCcEEEEeCCCccccccccccccccccccccc
Confidence            46899999999999955 78899999999999999 569999999999999999999883332222110000    00  


Q ss_pred             -hhhhhhhhccccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCc
Q 018481           87 -VQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPK  165 (355)
Q Consensus        87 -~~~~~~~~~~~~~~dNr~i~Dd~~sQkLt~eeIe~LKk~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~  165 (355)
                       ....+.....+.++|||+|+|++++|+||+|||++||++|++|+|||++||+||+||++||+||||||+|||+|||+++
T Consensus        80 ~~~~~~~~~~~~~~~dNr~i~D~~~~QkLt~eeIe~LK~~g~sg~eII~kLiens~tF~~KT~FSqeKYlkrK~kKy~~~  159 (299)
T PF04189_consen   80 EGDDSEELENEESSRDNRNIIDDNSSQKLTQEEIEELKKEGVSGEEIIEKLIENSSTFDKKTEFSQEKYLKRKQKKYLKR  159 (299)
T ss_pred             ccccccccccccccccccccccccccccCCHHHHHHHHHcCCCHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhhhhce
Confidence             0012234556789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChHHHHHHHHhcCcccccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCC
Q 018481          166 VLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLY  245 (355)
Q Consensus       166 ftilkPt~~~i~e~y~~KdP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~  245 (355)
                      |+|++||+++||++||.|+|.||++||+|+|||||+||||++|+||||||+|+|||+|||||||||.|+||++|.|++||
T Consensus       160 ftv~~pt~~~l~e~y~~k~p~Ki~~lR~d~la~il~~aNV~~g~r~Lv~D~~~GLv~aav~eRmgg~G~i~~~~~~~~~p  239 (299)
T PF04189_consen  160 FTVLRPTIRNLCEYYFEKDPQKIMDLRFDTLAQILSLANVHAGGRVLVVDDCGGLVVAAVAERMGGSGNIITLHHGNSPP  239 (299)
T ss_pred             EEEeCCCHHHHHHHHhhcChHHHhccCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHhCCCceEEEEeeCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHhcCCCHHHHhhee--eeehhhhcccccccc
Q 018481          246 PMDIVRIFNFSNEICKSIV--RASVSDVTSQSETSE  279 (355)
Q Consensus       246 ~~~~l~~~Nf~~~~~~~i~--~~~l~~l~~~~~~~~  279 (355)
                      ++++|++|||+.+.+.+++  ..+|..|..++..+.
T Consensus       240 ~~~~l~~~nf~~~~~~~~~~~~~~l~~l~~l~~~~~  275 (299)
T PF04189_consen  240 NLDILKYFNFDEENLSSIHPLNFNLKTLSWLQLLEP  275 (299)
T ss_pred             CHHHHHhCCCChhccccccccchhhhhhhhhhccCC
Confidence            9999999999999999988  778888877666655

This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
>KOG1416 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] Back     alignment and domain information
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A Back     alignment and domain information
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 Back     alignment and domain information
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional Back     alignment and domain information
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase Back     alignment and domain information
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK04266 fibrillarin; Provisional Back     alignment and domain information
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional Back     alignment and domain information
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional Back     alignment and domain information
>PLN02476 O-methyltransferase Back     alignment and domain information
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed Back     alignment and domain information
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional Back     alignment and domain information
>TIGR00438 rrmJ cell division protein FtsJ Back     alignment and domain information
>PLN02781 Probable caffeoyl-CoA O-methyltransferase Back     alignment and domain information
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit Back     alignment and domain information
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] Back     alignment and domain information
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR Back     alignment and domain information
>PLN02589 caffeoyl-CoA O-methyltransferase Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 45/345 (13%), Positives = 92/345 (26%), Gaps = 94/345 (27%)

Query: 44  LKIGNKNCS------LQPLIGCPFGSLFQVD-NGKEGPNLSRVIPSTEDDVQEKEDAQIS 96
           L + N N        LQ L       L+Q+D N     + S  I      +Q +    + 
Sbjct: 187 LNLKNCNSPETVLEMLQKL-------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 97  GEFRDNRA--IVDD--NKA-------QC---LSGEDIDEMRRQGATGEEIVEALIANSAT 142
            +        ++ +  N          C   L+           A     +  L  +S T
Sbjct: 240 SK-PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMT 297

Query: 143 FEKKTS---FSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLR---VDML 196
                        KY   + +    +VL   P   SI     +   A     +    D L
Sbjct: 298 LTPDEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFS 256
           + ++                                       + + L P +  ++F   
Sbjct: 356 TTIIES------------------------------------SL-NVLEPAEYRKMF--- 375

Query: 257 NEICKSIVRASVSDVTSQ--------SETSEQSDQLESACNMEIQSNEQKSSSVSMEDIS 308
            +   S+   S   + +            S+    +       +   + K S++S+  I 
Sbjct: 376 -DRL-SVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 309 LSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKENGF 353
           L  +  + +    A H     I   + + +    + L     + +
Sbjct: 433 LELKVKLENEY--ALH---RSIVDHYNIPKTFDSDDLIPPYLDQY 472
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
3mb5_A255 SAM-dependent methyltransferase; RNA methyltransfe 99.22
1i9g_A280 Hypothetical protein RV2118C; mtase, adoMet, cryst 99.19
1o54_A277 SAM-dependent O-methyltransferase; TM0748, structu 99.08
2pwy_A258 TRNA (adenine-N(1)-)-methyltransferase; mtase, ado 98.93
2b25_A336 Hypothetical protein; structural genomics, methyl 98.73
2yvl_A248 TRMI protein, hypothetical protein; tRNA, methyltr 98.37
1yb2_A275 Hypothetical protein TA0852; structural genomics, 95.52
2yxe_A215 Protein-L-isoaspartate O-methyltransferase; rossma 93.33
4df3_A233 Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; 92.76
3eey_A197 Putative rRNA methylase; rRNA methylation, S-adeno 90.45
3r3h_A242 O-methyltransferase, SAM-dependent; structural gen 90.4
3lbf_A210 Protein-L-isoaspartate O-methyltransferase; modifi 89.54
2avd_A229 Catechol-O-methyltransferase; structural genomics, 89.38
3id6_C232 Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; 89.15
3tr6_A225 O-methyltransferase; cellular processes; HET: SAH; 88.91
2pbf_A227 Protein-L-isoaspartate O-methyltransferase beta-A 88.89
1i1n_A226 Protein-L-isoaspartate O-methyltransferase; S-aden 88.49
2hnk_A239 SAM-dependent O-methyltransferase; modified rossma 87.5
2bm8_A236 Cephalosporin hydroxylase CMCI; cephamycin biosynt 87.49
3e05_A204 Precorrin-6Y C5,15-methyltransferase (decarboxyla; 86.95
3duw_A223 OMT, O-methyltransferase, putative; alternating of 86.78
1jg1_A235 PIMT;, protein-L-isoaspartate O-methyltransferase; 86.54
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 86.04
3tfw_A248 Putative O-methyltransferase; PSI-biology, nysgrc, 85.96
1r18_A227 Protein-L-isoaspartate(D-aspartate)-O-methyltrans; 84.71
1fbn_A230 MJ fibrillarin homologue; MJ proteins, ribosomal R 84.44
1nt2_A210 Fibrillarin-like PRE-rRNA processing protein; adeM 84.21
1g8a_A227 Fibrillarin-like PRE-rRNA processing protein; rRNA 84.02
2ipx_A233 RRNA 2'-O-methyltransferase fibrillarin; FBL, stru 83.9
3c3y_A237 Pfomt, O-methyltransferase; plant secondary metabo 83.76
3dr5_A221 Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 82.89
1ej0_A180 FTSJ; methyltransferase, adoMet, adenosyl methioni 82.67
3dh0_A219 SAM dependent methyltransferase; cystal structure, 81.95
3gru_A295 Dimethyladenosine transferase; rossman fold, ribos 81.42
1dl5_A317 Protein-L-isoaspartate O-methyltransferase; isoasp 81.14
2nyu_A196 Putative ribosomal RNA methyltransferase 2; SAM, s 80.94
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 80.26
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Back     alignment and structure
Probab=99.22  E-value=2.4e-10  Score=103.35  Aligned_cols=128  Identities=17%  Similarity=0.240  Sum_probs=106.5

Q ss_pred             cccCCCEEEEEecCCCeEEEEEEecCCEEEEcceeeeCCCccCCCCCcEEEEeCCCCCCCCcccCCCCcchhhhhhhhhc
Q 018481           16 LTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQI   95 (355)
Q Consensus        16 ~I~eGd~VlL~~~~g~~~~iv~l~~~~~i~lgK~~f~l~~LIG~pyGstfEi~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (355)
                      +|++||.|+|..+.+ +++.+++.+| .+...+|.|.++++||++||..+....+.                        
T Consensus         1 ~~~~Gd~v~~~~~~~-~~~~~~~~~~-~~~~~~g~~~~~~~ig~~~g~~i~~~~g~------------------------   54 (255)
T 3mb5_A            1 MIREGDKVVLVDPRG-KRYLITVSKR-DFHTDLGILKLEEIIGRNFGEAIKSHKGH------------------------   54 (255)
T ss_dssp             CCCTTCEEEEECTTS-CEEEEECCSS-EEEETTEEEEGGGGTTCCTTCEEECTTCC------------------------
T ss_pred             CCCCCCEEEEEECCC-cEEEEEecCC-eEecCCEEEEHHHhcCCCCCcEEEECCCc------------------------
Confidence            589999999999876 6668899998 88888899999999999999988754332                        


Q ss_pred             cccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHH
Q 018481           96 SGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARS  175 (355)
Q Consensus        96 ~~~~~dNr~i~Dd~~sQkLt~eeIe~LKk~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~ftilkPt~~~  175 (355)
                                                                                           .|.+++|+...
T Consensus        55 ---------------------------------------------------------------------~~~~~~p~~~~   65 (255)
T 3mb5_A           55 ---------------------------------------------------------------------EFKILRPRIVD   65 (255)
T ss_dssp             ---------------------------------------------------------------------EEEEECCCHHH
T ss_pred             ---------------------------------------------------------------------EEEEeCCCHHH
Confidence                                                                                 35778888776


Q ss_pred             HHHHHHhcCcccccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481          176 ICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD  242 (355)
Q Consensus       176 i~e~y~~KdP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~  242 (355)
                      .+. .+   +.....+..+.+++|+.++++.+|.+||.++.+.|.++.++++++|..+.|+.+....
T Consensus        66 ~~~-~~---~~~~~~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~  128 (255)
T 3mb5_A           66 YLD-KM---KRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIRE  128 (255)
T ss_dssp             HHH-HS---CCCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             HHh-hC---ccccccccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCH
Confidence            655 23   3334457788899999999999999999999999999999999999889999987643
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Back     alignment and structure
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Back     alignment and structure
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Back     alignment and structure
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Back     alignment and structure
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Back     alignment and structure
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Back     alignment and structure
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Back     alignment and structure
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Back     alignment and structure
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Back     alignment and structure
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Back     alignment and structure
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Back     alignment and structure
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* Back     alignment and structure
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 Back     alignment and structure
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Back     alignment and structure
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Back     alignment and structure
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Back     alignment and structure
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* Back     alignment and structure
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 Back     alignment and structure
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Back     alignment and structure
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Back     alignment and structure
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Back     alignment and structure
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 Back     alignment and structure
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Back     alignment and structure
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Back     alignment and structure
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Back     alignment and structure
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Back     alignment and structure
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Back     alignment and structure
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Back     alignment and structure
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
d1i9ga_264 Probable methyltransferase Rv2118c {Mycobacterium 99.62
d1o54a_266 Hypothetical protein TM0748 {Thermotoga maritima [ 99.6
d2b25a1324 Hypothetical protein FLJ20628 {Human (Homo sapiens 99.54
d1yb2a1250 Hypothetical protein Ta0852 {Thermoplasma acidophi 98.42
d1jg1a_215 Protein-L-isoaspartyl O-methyltransferase {Archaeo 96.79
d1dl5a1213 Protein-L-isoaspartyl O-methyltransferase {Thermot 96.72
d1i1na_224 Protein-L-isoaspartyl O-methyltransferase {Human ( 96.08
d1r18a_223 Protein-L-isoaspartyl O-methyltransferase {Fruit f 94.9
d1vbfa_224 Protein-L-isoaspartyl O-methyltransferase {Sulfolo 94.68
d1g8aa_227 Fibrillarin homologue {Archaeon Pyrococcus horikos 91.58
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 90.43
d1l3ia_186 Precorrin-6Y methyltransferase (CbiT) {Archaeon Me 90.28
d2avda1219 COMT domain-containing protein 1, COMTD1 {Human (H 87.07
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 86.77
d1f8fa2174 Benzyl alcohol dehydrogenase {Acinetobacter calcoa 84.07
d1cdoa2175 Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI 83.47
d2jhfa2176 Alcohol dehydrogenase {Horse (Equus caballus) [Tax 83.07
d1nt2a_209 Fibrillarin homologue {Archaeon Archaeoglobus fulg 82.61
d1kola2195 Formaldehyde dehydrogenase {Pseudomonas putida [Ta 81.4
d1llua2166 Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax 80.46
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=7e-16  Score=144.05  Aligned_cols=129  Identities=20%  Similarity=0.213  Sum_probs=105.4

Q ss_pred             cccCCCEEEEEecCCCeEEEEEEecCCEEEEcceeeeCCCccCCCCCcEEEEeCCCCCCCCcccCCCCcchhhhhhhhhc
Q 018481           16 LTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQI   95 (355)
Q Consensus        16 ~I~eGd~VlL~~~~g~~~~iv~l~~~~~i~lgK~~f~l~~LIG~pyGstfEi~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (355)
                      .+++||+|+|....|. .++++|++|+.+...+|.|.+++|||++||+.++...+.                        
T Consensus         3 ~f~~Gd~Vll~~~~~~-~~~~~l~~g~~~~t~~G~~~h~~iiGk~~G~~v~t~~g~------------------------   57 (264)
T d1i9ga_           3 PFSIGERVQLTDAKGR-RYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGA------------------------   57 (264)
T ss_dssp             SCCTTCEEEEEETTCC-EEEEECCTTCEEEETTEEEEHHHHTTCCTTEEEECSSCC------------------------
T ss_pred             CCCCCCEEEEEECCCC-EEEEEECCCCEEEcCCeeEeHHHhcCCCCCeEEEeCCCC------------------------
Confidence            3799999999988775 558999999999999999999999999999988755432                        


Q ss_pred             cccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHH
Q 018481           96 SGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARS  175 (355)
Q Consensus        96 ~~~~~dNr~i~Dd~~sQkLt~eeIe~LKk~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~ftilkPt~~~  175 (355)
                                                                                           .|.+++||+.+
T Consensus        58 ---------------------------------------------------------------------~~~v~~pt~~~   68 (264)
T d1i9ga_          58 ---------------------------------------------------------------------LFLVLRPLLVD   68 (264)
T ss_dssp             ---------------------------------------------------------------------EEEEECCCHHH
T ss_pred             ---------------------------------------------------------------------EEEEeCCCHHH
Confidence                                                                                 35677777776


Q ss_pred             HHHHHHhcCcccccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481          176 ICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD  242 (355)
Q Consensus       176 i~e~y~~KdP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~  242 (355)
                      ....    -|-+..-+=+-..|+|+.+++|+||++||.+++++|-++.++|.++|..|+|+.+....
T Consensus        69 ~~~~----~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~  131 (264)
T d1i9ga_          69 YVMS----MPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRA  131 (264)
T ss_dssp             HHTT----SCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             HHhh----ccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCH
Confidence            5421    11122222244489999999999999999999999999999999999999999998653
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Back     information, alignment and structure
>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Back     information, alignment and structure
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure