Citrus Sinensis ID: 018495

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MEPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRLMISSSSQQQQQPSNSSSSGMAASSSIKSEEEEVGNIGVISSSSPDSGFDNSNNNNSNNFCQSSPSPDSNNNNNNYSVSSSGWLLGQSRQVMNSYGCAAIPSPVSAIPATARNSTSSGTSTNGQMGYFGEMVTGVESRPPTPPYPFSLLGGGF
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHccccccccEEEccccccEEEEccHHHHHHHHHccccccccHHHHHHHHHcccEEcccccEEEEccccccccHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccEEccHHHHccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccc
Coil and Loop (DISEMBL)
mepnntnnviapFVMKtyqmvndpttdsliswgkannsfivvdpldfsqrilpayfkhnnfSSFVRQLNtygfrkvdpdkweFANEWFLRGQKHLLKNIVrrkhssnrsahhmmmrggagdqdlddEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKvvedpdllpriIMEKesttnrnnyylgdkkrrlmissssqqqqqpsnssssgmaasssikseeeevgnigvisssspdsgfdnsnnnnsnnfcqsspspdsnnnnnnysvsssgwllgqSRQVMnsygcaaipspvsaipatarnstssgtstngqmgyfgemvtgvesrpptppypfsllgggf
Flexible Loop (DISEMBL)
mepnntnnviapFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRkhssnrsahhmmmrggagdqdlDDEEIVMEIARLRQeqksldeeLQGMNKrleaterrpEQMMAFLYkvvedpdlLPRIImekesttnrnnyylGDKKRRLMISSSsqqqqqpsnssssgMAASSSIKSEEEEVGNIGVISSSSPDSGFDNSNNNNSNNFCQSSPSPDSNNNNNNYSVSSSGWLLGQSRQVMNSYGCAAIPSPVSAIPATARnstssgtstngqMGYFGEMVtgvesrpptppypfsllgggf
Low Complexity Region (SEG)
MEPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRLMIssssqqqqqpsnssssgmaasssikseeeeVGNIGVIsssspdsgfdnsnnnnsnnfcqsspspdsnnnnnnysvsssGWLLGQSRQVMNSYGCaaipspvsaipataRnstssgtstngQMGYFGEMVTGVESRPPTPPYPFSLLGGGF
Disordered region (IsUnstruct)
********VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIV****************************************************************MAFLYKVVEDPDLLPRIIME*********YY*****************************************************************************************WLLG***QVMNSYGCAAI*****************************************************
Disordered Region (DISOPRED)
*************VMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKN*********************************************************A*ERRPEQMMAFLYKVVEDPDL***************************************************************************************************************************************************************************SLLGGG*
Disordered Region (DISEMBL)
MEPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRLM********************************GNIGVISSSSPDSGFDNSNNNNSNNFC********NNNNNNYSVSSSGWLLGQSRQVMNSYGCAAIPSPVSAIPA**********STNGQMGYFGEMVTGVESRPPTPPYPFSLLGGGF
Disordered Region (DISPRO)
********VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRR***************GAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNR***************************************************************************************************************************************************************L***F
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMExxxxxxxxxxxxxxxxxxxxxxxxxxxxPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRLMISSSSQQQQQPSNSSSSGMAASSSIKSEEEEVGNIGVISSSSPDSGFDNSNNNNSNNFCQSSPSPDSNNNNNNYSVSSSGWLLGQSRQVMNSYGCAAIPSPVSAIPATARNSTSSGTSTNGQMGYFGEMVTGVESRPPTPPYPFSLLGGGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
Q9LV52	330	Heat stress transcription	yes	no	0.526	0.566	0.705	1e-77
Q6EUG4	298	Heat stress transcription	yes	no	0.487	0.580	0.544	3e-53
Q6VBA4	339	Heat stress transcription	no	no	0.523	0.548	0.495	8e-53
Q0DBL6	278	Heat stress transcription	no	no	0.481	0.615	0.564	9e-53
Q942D6	250	Heat stress transcription	no	no	0.521	0.74	0.492	3e-51
P41153	527	Heat shock factor protein	N/A	no	0.552	0.371	0.464	7e-51
Q40152	527	Heat shock factor protein	N/A	no	0.552	0.371	0.455	8e-51
Q84T61	506	Heat stress transcription	no	no	0.535	0.375	0.488	8e-51
Q6F388	357	Heat stress transcription	no	no	0.540	0.537	0.495	9e-51
P41151	495	Heat stress transcription	no	no	0.611	0.438	0.451	1e-49

>sp|Q9LV52|HSFC1_ARATH Heat stress transcription factor C-1 OS=Arabidopsis thaliana GN=HSFC1 PE=2 SV=1

 Score =  290 bits (742), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 141/200 (70%), Positives = 165/200 (82%), Gaps = 13/200 (6%)

Query: 9   VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQL 68
           VIAPF++KTYQMVNDP+TD LI+WG A+NSFIVVDPLDFSQRILPAYFKHNNFSSFVRQL
Sbjct: 14  VIAPFIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQL 73

Query: 69  NTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEE 128
           NTYGFRKVDPD+WEFANE FLRGQKHLL NI RRKH+          RG  G QDL+D E
Sbjct: 74  NTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRKHA----------RGMYG-QDLEDGE 122

Query: 129 IVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKEST 188
           IV EI RL++EQ+ L+ E+Q MN+R+EATE+RPEQMMAFLYKVVEDPDLLPR+++EKE T
Sbjct: 123 IVREIERLKEEQRELEAEIQRMNRRIEATEKRPEQMMAFLYKVVEDPDLLPRMMLEKERT 182

Query: 189 TNRNNYYLGDKKRRLMISSS 208
             +    + DKK+R +  S+
Sbjct: 183 KQQQQ--VSDKKKRRVTMST 200

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Arabidopsis thaliana (taxid: 3702)

>sp|Q6EUG4|HFC2A_ORYSJ Heat stress transcription factor C-2a OS=Oryza sativa subsp. japonica GN=HSFC2A PE=2 SV=1

 Score =  209 bits (531), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 129/180 (71%), Gaps = 7/180 (3%)

Query: 10  IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLN 69
           +APFV KTY+MV+DP TD +I+WG+ +NSF+V DP  FSQ +LPA+FKH+NFSSFVRQLN
Sbjct: 12  VAPFVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLN 71

Query: 70  TYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRR-------KHSSNRSAHHMMMRGGAGDQ 122
           TYGFRKVDPD+WEFA+  FLRGQ HLL+ IVRR       K               AGD 
Sbjct: 72  TYGFRKVDPDRWEFAHVSFLRGQTHLLRRIVRRSSGGGGAKRKEEAGGCGGGGEAAAGDV 131

Query: 123 DLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRII 182
           D +   + +E+ARLR+EQ+ ++  +  M +R++ TERRP+QM+AFL KVV DP +L R++
Sbjct: 132 DEESAVVALEVARLRREQREIEGRVAAMWRRVQETERRPKQMLAFLVKVVGDPQVLRRLV 191

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6VBA4|HFC1A_ORYSJ Heat stress transcription factor C-1a OS=Oryza sativa subsp. japonica GN=HSFC1A PE=2 SV=2

 Score =  207 bits (528), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 105/212 (49%), Positives = 137/212 (64%), Gaps = 26/212 (12%)

Query: 11  APFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNT 70
           APFV KTYQMV DP TD+L+ WG+ NNSF+VVDP  FSQ +LP +FKH NFSSFVRQLNT
Sbjct: 25  APFVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNT 84

Query: 71  YGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK----------------------HSSNR 108
           YGFRKV PD+WEFA+E FLRGQ HLL  IVRRK                      H    
Sbjct: 85  YGFRKVHPDRWEFAHESFLRGQTHLLPRIVRRKKRGEGGGGGGGASCSFGGGAGEHQVAA 144

Query: 109 SAHHMMMRGGAGD--QDLDDEEIVM--EIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164
           +A  + M G   D  +D+  +E  +  E+ RLR EQ ++ EEL  M++RL+ATERRP+Q+
Sbjct: 145 AAASVGMSGEEEDAAEDVLAKEAALFEEVQRLRHEQTAIGEELARMSQRLQATERRPDQL 204

Query: 165 MAFLYKVVEDPDLLPRIIMEKESTTNRNNYYL 196
           M+FL K+ +DP+ +   ++E+ +   R   +L
Sbjct: 205 MSFLAKLADDPNAVTGHLLEQAAERKRRRQHL 236

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0DBL6|HFC2B_ORYSJ Heat stress transcription factor C-2b OS=Oryza sativa subsp. japonica GN=HSFC2B PE=2 SV=1

 Score =  207 bits (527), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 101/179 (56%), Positives = 128/179 (71%), Gaps = 8/179 (4%)

Query: 12  PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTY 71
           PFV KTY+MV DP TD +I WGK NNSF+V DP  FSQ +LPA+FKHNNFSSFVRQLNTY
Sbjct: 11  PFVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTY 70

Query: 72  GFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMM---RGGAGD--QDLDD 126
           GFRKVDPD+WEFA+  FLRGQ HLL+NIVRR  ++            R  + D      D
Sbjct: 71  GFRKVDPDRWEFAHASFLRGQTHLLRNIVRRGSAAAGGGGGGGGGKRRDASADGGGGGGD 130

Query: 127 EEIVM---EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRII 182
           E++ M   E+ RL+QEQ+++D+ +  M +R++ TERRP+QM+AFL KVV D D L R++
Sbjct: 131 EDMTMVATEVVRLKQEQRTIDDRVAAMWRRVQETERRPKQMLAFLLKVVGDRDKLHRLV 189

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q942D6|HFC1B_ORYSJ Heat stress transcription factor C-1b OS=Oryza sativa subsp. japonica GN=HSFC1B PE=2 SV=1

 Score =  202 bits (514), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/205 (49%), Positives = 140/205 (68%), Gaps = 20/205 (9%)

Query: 8   NVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQ 67
             +APFV KT+ MV+DP+T++++ WG A N+F+V+DP  FS  +LP+YFKH NF+SFVRQ
Sbjct: 20  GAVAPFVAKTFHMVSDPSTNAVVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQ 79

Query: 68  LNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGA--GDQDL- 124
           LNTYGFRKVDPD+WEFA+E FLRGQ  LL  IVR+K            +GGA  G ++L 
Sbjct: 80  LNTYGFRKVDPDRWEFAHESFLRGQAQLLPRIVRKKK-----------KGGAAPGCRELC 128

Query: 125 -DDEEI---VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPR 180
            + EE+   +  + RLR+EQ+ ++EELQ M++RL A E RP QMMAFL K+ ++P ++ R
Sbjct: 129 EEGEEVRGTIEAVQRLREEQRGMEEELQAMDQRLRAAESRPGQMMAFLAKLADEPGVVLR 188

Query: 181 IIMEK--ESTTNRNNYYLGDKKRRL 203
            ++ K  E     NN     K+RR+
Sbjct: 189 AMLAKKEELAAAGNNGSDPCKRRRI 213

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P41153|HSF8_SOLPE Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1

 Score =  201 bits (511), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 105/226 (46%), Positives = 140/226 (61%), Gaps = 30/226 (13%)

Query: 13  FVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYG 72
           F++KTY MV+DP+TD ++SW   NNSF+V DP +F++ +LP YFKHNNFSSFVRQLNTYG
Sbjct: 42  FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYG 101

Query: 73  FRKVDPDKWEFANEWFLRGQKHLLKNIVRRK------------------------HSSNR 108
           FRKVDPD+WEFANE FLRGQKHLLK+I RRK                        HS++ 
Sbjct: 102 FRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQQQMQPPGHSASV 161

Query: 109 SAHHMMMRGGAGDQ----DLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164
            A   + + G  ++      D   ++ E+ RLRQ+Q+S D +LQGM +RL+  E R +QM
Sbjct: 162 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQGMVQRLQGMELRQQQM 221

Query: 165 MAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRLMISSSSQ 210
           M+FL K V  P  L + + ++  +  R     G KKRR+     SQ
Sbjct: 222 MSFLAKAVNSPGFLAQFVQQQNESNKR--IAEGSKKRRIKQDIESQ 265

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

>sp|Q40152|HSF8_SOLLC Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1

 Score =  201 bits (511), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 103/226 (45%), Positives = 135/226 (59%), Gaps = 30/226 (13%)

Query: 13  FVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYG 72
           F++KTY MV+DP+TD ++SW   NNSF+V DP +F++ +LP YFKHNNFSSFVRQLNTYG
Sbjct: 40  FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYG 99

Query: 73  FRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQ---------- 122
           FRKVDPD+WEFANE FLRGQKHLLK+I RRK +   +       G A  Q          
Sbjct: 100 FRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASV 159

Query: 123 ------------------DLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164
                               D   ++ E+ RLRQ+Q++ D +LQGM +RL+  E R +QM
Sbjct: 160 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGMVQRLQGMELRQQQM 219

Query: 165 MAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRLMISSSSQ 210
           M+FL K V  P  L + + ++  +  R     G KKRR+     SQ
Sbjct: 220 MSFLAKAVNRPGFLAQFVQQQNESNKR--IAEGSKKRRIKQDIESQ 263

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum lycopersicum (taxid: 4081)

>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1

 Score =  201 bits (510), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 102/209 (48%), Positives = 144/209 (68%), Gaps = 19/209 (9%)

Query: 12  PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTY 71
           PF+MKTY+MV+DP TD+++SWG  NNSF+V +  +F++ +LP YFKH+NFSSFVRQLNTY
Sbjct: 37  PFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTY 96

Query: 72  GFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK--HSSNRSAHHMMMR---------GGAG 120
           GFRKVDPD+WEFANE FLRGQKHLLK I RRK  H +N+     +           G  G
Sbjct: 97  GFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFG 156

Query: 121 -DQDLD----DEEIVM-EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVED 174
            +++++    D+ ++M E+ RLRQ+Q++ D +LQ + KRL+  E+R +QMM+FL K +  
Sbjct: 157 MEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHS 216

Query: 175 PDLLPRIIMEKESTTNRNNYYLGDKKRRL 203
           P  L + + + E++  R      +KKRRL
Sbjct: 217 PGFLAQFVQQNENS--RRRIVASNKKRRL 243

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6F388|HFA2E_ORYSJ Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1

 Score =  201 bits (510), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 136/202 (67%), Gaps = 10/202 (4%)

Query: 12  PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTY 71
           PF+ KTY MV+DPTTD+++SW   NNSF+V DP  F   +LP YFKHNNFSSFVRQLNTY
Sbjct: 38  PFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTY 97

Query: 72  GFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK----HSSNRSAHHMMMRGGAG-----DQ 122
           GFRKVDPDKWEFANE FLRGQKHLLK+I RRK      S +S    +  G  G     DQ
Sbjct: 98  GFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPSQQSLGSFLEVGHFGYEGEIDQ 157

Query: 123 DLDDEEIVM-EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRI 181
              D+ ++M E+ +LRQEQ++   +LQ M ++L+ TE++ + MMAFL +V+ +P+ + ++
Sbjct: 158 LKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQHMMAFLSRVMHNPEFIRQL 217

Query: 182 IMEKESTTNRNNYYLGDKKRRL 203
             + E       +    ++RR+
Sbjct: 218 FSQSEMRKELEEFVSKKRRRRI 239

Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2

 Score =  197 bits (500), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/248 (45%), Positives = 153/248 (61%), Gaps = 31/248 (12%)

Query: 5   NTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSF 64
           N N++  PF+ KTY MV DP TD+++SW   NNSFIV DP +FS+ +LP YFKHNNFSSF
Sbjct: 45  NANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSF 104

Query: 65  VRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNR---------------- 108
           VRQLNTYGFRKVDPD+WEFANE FLRGQKHLLK I RRK                     
Sbjct: 105 VRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQ 164

Query: 109 ----SAHHMMMRGGAG-----DQDLDDEEIVM-EIARLRQEQKSLDEELQGMNKRLEATE 158
               +    +  G  G     +Q   D+ ++M E+ +LRQ+Q++ D +LQ + K L+  E
Sbjct: 165 GSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVME 224

Query: 159 RRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRLMISSSSQQQQQPSNS 218
           +R +Q+M+FL K V++P  L + I +K++ +N  +    +KKRRL   S++  +   SNS
Sbjct: 225 QRQQQIMSFLAKAVQNPTFLSQFI-QKQTDSNM-HVTEANKKRRLREDSTAATE---SNS 279

Query: 219 SSSGMAAS 226
            S  + AS
Sbjct: 280 HSHSLEAS 287

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
255546499	337	DNA binding protein, putative [Ricinus c	0.890	0.937	0.585	2e-97
225445248	329	PREDICTED: heat stress transcription fac	0.870	0.939	0.574	1e-95
356531261	320	PREDICTED: heat stress transcription fac	0.842	0.934	0.514	3e-84
302398879	339	HSF domain class transcription factor [M	0.918	0.961	0.516	3e-83
224142143	176	predicted protein [Populus trichocarpa]	0.495	1.0	0.807	3e-82
340749207	329	heat shock factor [Arabidopsis thaliana]	0.881	0.951	0.488	4e-78
15230127	330	heat stress transcription factor C-1 [Ar	0.526	0.566	0.705	8e-76
297831294	328	hypothetical protein ARALYDRAFT_479964 [	0.526	0.570	0.702	1e-75
449465338	291	PREDICTED: heat stress transcription fac	0.540	0.659	0.674	6e-75
449443329	304	PREDICTED: heat stress transcription fac	0.833	0.973	0.426	1e-71

>gi|255546499|ref|XP_002514309.1| DNA binding protein, putative [Ricinus communis] gi|223546765|gb|EEF48263.1| DNA binding protein, putative [Ricinus communis]

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 220/376 (58%), Positives = 253/376 (67%), Gaps = 60/376 (15%)

Query: 1   MEPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNN 60
           ME  N++N+IAPFVMKTYQ+VNDPTTD+LI+WGKANNSFIVVDPLDFSQRILPAYFKHNN
Sbjct: 1   MESTNSSNLIAPFVMKTYQIVNDPTTDTLITWGKANNSFIVVDPLDFSQRILPAYFKHNN 60

Query: 61  FSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAG 120
           FSSFVRQLNTYGFRKVDPD WEFANEWFLRGQK  LKNIVRRKHS          +    
Sbjct: 61  FSSFVRQLNTYGFRKVDPDIWEFANEWFLRGQKQFLKNIVRRKHS----------KSSCK 110

Query: 121 DQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPR 180
            +D D+EE+VMEIARL+QEQ+ LDEEL+GMNKRLEATERRP+QMMAFLYKVVEDPD+LPR
Sbjct: 111 IEDFDNEELVMEIARLKQEQRVLDEELEGMNKRLEATERRPQQMMAFLYKVVEDPDILPR 170

Query: 181 IIMEKESTTNRNNYYLGDKKRRLMISSSSQQQQQPSNSSSSGMAASSSIKSEEEEVGNIG 240
           ++++KE T   N+    DKKRRLMISSSS      + SSS                GNIG
Sbjct: 171 MMLQKEQTKQLNS----DKKRRLMISSSSSSSGGAAVSSSVKSEEEEE--------GNIG 218

Query: 241 VISSSSPDSGFDNSNNNNSNNFCQSSPSPDSNNNNNNYSVSSSGWLLGQSRQVMNSYGCA 300
            I  SSP+SGF   NNNN NN  QSSPSP++N           GW LG       +YGCA
Sbjct: 219 AI--SSPESGFGIDNNNNYNNLYQSSPSPETN---------FIGW-LGDG-----NYGCA 261

Query: 301 AI-PSPVS--------------------AIPATARNSTSSGTSTNGQMGYFGEMVTGVES 339
            + P+P++                     I      S  +G     Q  YFGE+ T VE+
Sbjct: 262 EVAPAPITGGIGNSVKLAVSPPPQMPVNGIICYGGGSGGNGGDRGSQTSYFGELATAVEA 321

Query: 340 RPPTPPYPFSLLGGGF 355
           +PP PPYPFSLLGG F
Sbjct: 322 KPPPPPYPFSLLGGDF 337

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445248|ref|XP_002281028.1| PREDICTED: heat stress transcription factor C-1 [Vitis vinifera] gi|147779536|emb|CAN72162.1| hypothetical protein VITISV_009631 [Vitis vinifera] gi|297738829|emb|CBI28074.3| unnamed protein product [Vitis vinifera]

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 209/364 (57%), Positives = 248/364 (68%), Gaps = 55/364 (15%)

Query: 7   NNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVR 66
           NN+IAPFVMKTYQMVND +TD+LI+WG+ANNSFIV DPLDFSQRILPAYFKHNNFSSFVR
Sbjct: 6   NNIIAPFVMKTYQMVNDSSTDALITWGRANNSFIVFDPLDFSQRILPAYFKHNNFSSFVR 65

Query: 67  QLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSS-NRSAHHMMMRGGAGDQDLD 125
           QLNTYGFRKVDPD+WEFANEWFLRGQ+ LLKNIVR+KHSS  RS+  +  +   G     
Sbjct: 66  QLNTYGFRKVDPDRWEFANEWFLRGQRQLLKNIVRKKHSSCGRSSFLLQAKLEDG----- 120

Query: 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEK 185
           DEEI+ EI RL+ EQKSL+EEL+GM KRLEATERRP+QMMAFLYKVVEDP+L+P ++MEK
Sbjct: 121 DEEILAEIERLKHEQKSLEEELEGMTKRLEATERRPQQMMAFLYKVVEDPELIPTMMMEK 180

Query: 186 ESTTNRNNYYLGDKKRRLMISSSSQQQQQPSNSSSSGMAASSSIKSEEEEVGN-IGVISS 244
           E         LG+KKRRL+I S+         SSSSG A ++S+KSEEEE G+ +G+ISS
Sbjct: 181 ERRRQ-----LGEKKRRLLIQST---------SSSSGTAGTASVKSEEEEDGSTVGIISS 226

Query: 245 SSPDSGFDNSNNNNSNNFCQSSPSPDSNNNNNNYSVSSSGW-LLGQSRQVMNSYGCAAIP 303
                               SSPSPD++           GW L+ Q       Y  AAIP
Sbjct: 227 --------------PETLSHSSPSPDTSTPAWVRPRQMMGWPLVAQ-----QPYPLAAIP 267

Query: 304 SPVSAIPATA-----------RNSTSSGTSTN-GQMGYFGEMVTGVESRPPTPPYPFSLL 351
           SP+ +   T             N+ SS  S++ GQ+ YF EM  GVE+RP   PYPFSLL
Sbjct: 268 SPIYSGSVTGIGHFNTMSPPPENTISSYKSSDSGQLSYFTEMEDGVETRP--LPYPFSLL 325

Query: 352 GGGF 355
            GGF
Sbjct: 326 EGGF 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531261|ref|XP_003534196.1| PREDICTED: heat stress transcription factor C-1-like [Glycine max]

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 181/352 (51%), Positives = 233/352 (66%), Gaps = 53/352 (15%)

Query: 11  APFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNT 70
           APFV+KTY MVNDPTTD LI WG ANNSFIV+DPLDFS  +LPA+FKHNNFSSFVRQLNT
Sbjct: 15  APFVIKTYNMVNDPTTDKLIMWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNT 74

Query: 71  YGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSS------NRSAHHMMMRGGAGDQDL 124
           YGFRKVDPD+WEFANEWFLRGQKHLL+NI RRKH        N  +HH  ++     ++L
Sbjct: 75  YGFRKVDPDRWEFANEWFLRGQKHLLRNIARRKHGGAGRSNFNLHSHHHPLK----VEEL 130

Query: 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIME 184
           DDE +VMEIARL++EQK+L+EELQGMNKRLE TE+RP+QMMAFL KVVEDP +L RI+ E
Sbjct: 131 DDEAMVMEIARLKEEQKALEEELQGMNKRLETTEKRPQQMMAFLSKVVEDPQVLSRILRE 190

Query: 185 KESTTNRNNYYLGDKKRRLMISSSSQQQQQPSNSSSSGMAASSSIKSE-EEEVGNIGVIS 243
           +E        +LG+KKRRL+   ++        ++++  ++SS IK+E EE+ GN  ++ 
Sbjct: 191 REKK------HLGEKKRRLIPPPTTT-------AATTSSSSSSGIKTEFEEDEGNYNIM- 236

Query: 244 SSSPDSGFDNSNNNNSNNFCQSSPSPDSNNNNNNYSVSSSGWLLGQSRQVMNSYGCAAIP 303
           SSSP++G +  N    NN C  SP            +++  W      Q  + Y   A+ 
Sbjct: 237 SSSPETGLEIDN----NNIC--SP------------LAAGYW----GEQGCHGYNRGAVT 274

Query: 304 SPVSAIPATARNSTSSGTSTNGQMGYFGEMVTGVESRPPTPPYPFSLLGGGF 355
           +P++ +   A    + G    G+  +FGEM     +    PPYPFSLL GGF
Sbjct: 275 APLTVV---APAVPTMGGGYLGRGVFFGEMAAEGNA---VPPYPFSLLEGGF 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398879|gb|ADL36734.1| HSF domain class transcription factor [Malus x domestica]

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 185/358 (51%), Positives = 246/358 (68%), Gaps = 32/358 (8%)

Query: 6   TNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFV 65
           +NNVIAPFVMKTYQMVND TTD+LI+WG+ANNSF+VVDP+ FSQR+LPAYFKHNNFSSFV
Sbjct: 6   SNNVIAPFVMKTYQMVNDSTTDNLITWGRANNSFVVVDPVVFSQRLLPAYFKHNNFSSFV 65

Query: 66  RQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRG-GAGDQDL 124
           RQLNTYGFRKVDPDKWEFA+EWFLRGQ HLL+N+ RRKH    S+ +       A  ++L
Sbjct: 66  RQLNTYGFRKVDPDKWEFASEWFLRGQTHLLRNVARRKHMGKSSSSNSNANFLQAKHEEL 125

Query: 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIME 184
           D E+I+ EI+ L+QEQK+L++E+  MN+RL+ATERRP+QMMAFL KV EDP++LPR+++E
Sbjct: 126 DGEDIIREISGLKQEQKALEQEIGDMNRRLDATERRPQQMMAFLNKVAEDPEILPRMMLE 185

Query: 185 KESTTNRNNYYLGDKKRRLMISSSSQQQQQPSNSSSSGMAASSSIKSEEEEVGNIGVISS 244
           K+  T      LG+KKRR+M+ +S+      S+SSSS M A++S+K+E+E+ G + VI S
Sbjct: 186 KDRATAAQ---LGEKKRRVMMMASTS-----SSSSSSTMGATTSVKTEDEDDGTVAVI-S 236

Query: 245 SSPDSGFDNSNNNNSNNFCQSSPSPDSNNNNNNYSVSSSGWLLGQSRQVMNSYGCAAIPS 304
           SSP++GF+  + N         P+P      +++      W++ +   + N Y       
Sbjct: 237 SSPEAGFEMESFNR-------YPAPPEAQTASDW--LRQRWVVDRVHAIQNPYNMNP--- 284

Query: 305 PVSAIPATARNSTSSGTST-------NGQMGYFGEMVTGVESRPPTPPYPFSLLGGGF 355
             +A+   A N+ +SG S         G  G      T VE+ PP PPYPFSLL GGF
Sbjct: 285 --TALGHGAENTRNSGNSAYGYGNGSGGGPGGEVGFFTEVEASPP-PPYPFSLLEGGF 339

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142143|ref|XP_002324418.1| predicted protein [Populus trichocarpa] gi|222865852|gb|EEF02983.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 143/177 (80%), Positives = 161/177 (90%), Gaps = 1/177 (0%)

Query: 10  IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLN 69
           +APFV+K YQMV+DPTTDSLISWG+ANNSFIV+DPLDFSQRILP YFKHNNFSSFVRQLN
Sbjct: 1   VAPFVLKIYQMVSDPTTDSLISWGRANNSFIVIDPLDFSQRILPVYFKHNNFSSFVRQLN 60

Query: 70  TYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEI 129
           TYGFRKVDPD+WEFANEWFLRGQK LLKNIVRRKHSSN      M     G +D DDE+I
Sbjct: 61  TYGFRKVDPDRWEFANEWFLRGQKQLLKNIVRRKHSSNNKGSSYMQVNIKG-EDFDDEDI 119

Query: 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKE 186
           +MEIARL+QEQK+L++EL+GMNKRLEATERRP+QMMAF+YKVVEDPDLLPR+I+EKE
Sbjct: 120 IMEIARLKQEQKALEQELEGMNKRLEATERRPQQMMAFIYKVVEDPDLLPRMILEKE 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|340749207|gb|AEK67477.1| heat shock factor [Arabidopsis thaliana]

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 171/350 (48%), Positives = 214/350 (61%), Gaps = 37/350 (10%)

Query: 9   VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQL 68
           VIAPF++KTYQMVNDP+TD LI+WG A+NSFIVVDPLDFSQRILPAYFKHNNFSSFVRQL
Sbjct: 14  VIAPFIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQL 73

Query: 69  NTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEE 128
           NTYGFRKVDPD+WEFANE FLRGQKHLL NI RRKH+          RG  G QDL+D E
Sbjct: 74  NTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRKHA----------RGMYG-QDLEDGE 122

Query: 129 IVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKEST 188
           IV EI RL++EQ+ L+ E+Q MN+R+EATE+RPEQMMAFLYKVVEDPDLLPR+++EKE T
Sbjct: 123 IVREIERLKEEQRELEAEIQRMNRRIEATEKRPEQMMAFLYKVVEDPDLLPRMMLEKERT 182

Query: 189 TNRNNYYLGDKKRRLMISSSSQQQQQPSNSSSSGMAASSSIKSEEEEVGNIGVISSSSPD 248
             +    + DKK+R  ++ S+ + ++       G        S         +  + SPD
Sbjct: 183 KQQQQ--VSDKKKR-RVTMSTVKSEEEEVEEDEGRVFRVMSSSTPSPSSTENLYRNHSPD 239

Query: 249 SGFDNSNNNNSNNFCQSSPSPDSNNNNNNYSVSSSGWLLGQSRQVMNSYGCAAIPSPVSA 308
                               P +     +Y       L+ +S    ++   ++  +   +
Sbjct: 240 GWI----------------VPMTQGQFGSYETG----LVAKSMLSNSTSSTSSSLTSTFS 279

Query: 309 IPATARNSTSSGTSTNGQMGYFGEMVTG--VESRPP-TPPYPFSLLGGGF 355
           +P +         S  G+  Y      G  VES PP TPPYPFSL  GGF
Sbjct: 280 LPESVNGGGGGCGSIQGERRYKETATFGGVVESNPPTTPPYPFSLFRGGF 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230127|ref|NP_189095.1| heat stress transcription factor C-1 [Arabidopsis thaliana] gi|75311616|sp|Q9LV52.1|HSFC1_ARATH RecName: Full=Heat stress transcription factor C-1; Short=AtHsfC1; AltName: Full=AtHsf-08 gi|9294046|dbj|BAB02003.1| unnamed protein product [Arabidopsis thaliana] gi|15810194|gb|AAL06998.1| AT3g24520/MOB24_5 [Arabidopsis thaliana] gi|18252249|gb|AAL62005.1| AT3g24520/MOB24_5 [Arabidopsis thaliana] gi|332643394|gb|AEE76915.1| heat stress transcription factor C-1 [Arabidopsis thaliana]

 Score =  290 bits (742), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 141/200 (70%), Positives = 165/200 (82%), Gaps = 13/200 (6%)

Query: 9   VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQL 68
           VIAPF++KTYQMVNDP+TD LI+WG A+NSFIVVDPLDFSQRILPAYFKHNNFSSFVRQL
Sbjct: 14  VIAPFIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQL 73

Query: 69  NTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEE 128
           NTYGFRKVDPD+WEFANE FLRGQKHLL NI RRKH+          RG  G QDL+D E
Sbjct: 74  NTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRKHA----------RGMYG-QDLEDGE 122

Query: 129 IVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKEST 188
           IV EI RL++EQ+ L+ E+Q MN+R+EATE+RPEQMMAFLYKVVEDPDLLPR+++EKE T
Sbjct: 123 IVREIERLKEEQRELEAEIQRMNRRIEATEKRPEQMMAFLYKVVEDPDLLPRMMLEKERT 182

Query: 189 TNRNNYYLGDKKRRLMISSS 208
             +    + DKK+R +  S+
Sbjct: 183 KQQQQ--VSDKKKRRVTMST 200

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831294|ref|XP_002883529.1| hypothetical protein ARALYDRAFT_479964 [Arabidopsis lyrata subsp. lyrata] gi|297329369|gb|EFH59788.1| hypothetical protein ARALYDRAFT_479964 [Arabidopsis lyrata subsp. lyrata]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/202 (70%), Positives = 165/202 (81%), Gaps = 15/202 (7%)

Query: 9   VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQL 68
           VIAPF++KTYQMVNDP TD LI+WG A+NSFIVVDPLDFSQRILPAYFKHNNFSSFVRQL
Sbjct: 17  VIAPFIVKTYQMVNDPLTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQL 76

Query: 69  NTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEE 128
           NTYGFRKVDPD+WEFANE FLRGQKHLLKNI RRKH+          RG  G QDL+D E
Sbjct: 77  NTYGFRKVDPDRWEFANEHFLRGQKHLLKNIARRKHA----------RGMYG-QDLEDGE 125

Query: 129 IVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKEST 188
           IV EI RL+ EQ+ L+ E+Q MN+R+EATE+RPEQMMAFLYKVVEDPDLLPR+++EKE T
Sbjct: 126 IVREIERLKDEQRELEAEIQRMNQRIEATEKRPEQMMAFLYKVVEDPDLLPRMMLEKERT 185

Query: 189 TNRNNYYLGDKKRRLMISSSSQ 210
             +    + DKK+R +  S+ +
Sbjct: 186 KQQ----VSDKKKRRVTMSTVK 203

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465338|ref|XP_004150385.1| PREDICTED: heat stress transcription factor C-1-like [Cucumis sativus] gi|449524382|ref|XP_004169202.1| PREDICTED: heat stress transcription factor C-1-like [Cucumis sativus]

 Score =  287 bits (734), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 165/206 (80%), Gaps = 14/206 (6%)

Query: 1   MEPNNTNN-VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHN 59
           MEPN+ NN ++APFV+KTYQMVNDP TD  ISWG ANNSFIV+DPL FS  +LPA+FKHN
Sbjct: 1   MEPNSGNNDIVAPFVLKTYQMVNDPLTDPFISWGSANNSFIVLDPLHFSHTLLPAFFKHN 60

Query: 60  NFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGA 119
           NFSSFVRQLNTYGFRKVDPD+WEFANEWFLRGQ  LLKNIVRRK S N+           
Sbjct: 61  NFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQFQLLKNIVRRKQSCNKYL--------V 112

Query: 120 GDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLP 179
           GDQ + DEE+V EI RLR+EQ++L+E+L+GM KRLE TE+RP+QMMAFL+KVVEDP++LP
Sbjct: 113 GDQ-MGDEELVTEIGRLRKEQRALEEQLEGMKKRLETTEKRPQQMMAFLHKVVEDPEILP 171

Query: 180 RIIMEKESTTNRNNYYLGDKKRRLMI 205
           RI++ K+ T         +KKRRLMI
Sbjct: 172 RIMLHKDPT----RLQFAEKKRRLMI 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443329|ref|XP_004139432.1| PREDICTED: heat stress transcription factor C-1-like [Cucumis sativus] gi|449520589|ref|XP_004167316.1| PREDICTED: heat stress transcription factor C-1-like [Cucumis sativus]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 155/363 (42%), Positives = 212/363 (58%), Gaps = 67/363 (18%)

Query: 1   MEPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNN 60
           ME N  N+ +APFVMKTY+MVNDP+TD LI W K NNSF+V DPL+ S+RILP+YFKHNN
Sbjct: 1   MESNQQNDAVAPFVMKTYEMVNDPSTDDLIGWSKGNNSFVVADPLELSRRILPSYFKHNN 60

Query: 61  FSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAG 120
           FSSFVRQLNTYGF+KVDPD+WEFA++WFLRGQKHLLKNI RR+HS N        +    
Sbjct: 61  FSSFVRQLNTYGFKKVDPDQWEFASQWFLRGQKHLLKNICRRRHSRNS-----YFQTKYA 115

Query: 121 DQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPR 180
           D   DD E+ +EI++L++EQ++L+ E++ MNKR+EATE+RP+QMMAFLYK++++P++LPR
Sbjct: 116 D---DDGELAIEISKLKREQRALELEVESMNKRIEATEKRPQQMMAFLYKIMDNPEILPR 172

Query: 181 IIMEKESTTNRNNYYLGDKKRRLMI-----SSSSQQQQQPSNSSSSGMAA---SSSIKSE 232
           II++     +R    L  K+RR+++      ++ +  + P + SS        ++S+ S 
Sbjct: 173 IIIQ----NHRVRRQLPSKRRRVVMPPPPSPTTVKVDKIPDDDSSPETGVFVDNASLSSP 228

Query: 233 EEEVGNIGVISSSSPDSGFDNSNNNNSNNFCQSSPSPDSNNNNNNYSVSSSGWLLGQSRQ 292
           E  +   G  S+        +S    S+    S P  D                      
Sbjct: 229 ETTLWWDGAASAPVSSPLTSDSGGGLSDYISLSPPESD---------------------- 266

Query: 293 VMNSYGCAAIPSPVSAIPATARNSTSSGTSTNGQMGYFGEMVTGVESRPPTPPYPFSLLG 352
            ++ YG   +                          Y  E+V G  SRPP PPYPFSL  
Sbjct: 267 -VSMYGIGGVGD-----------------------CYMAELVAGGGSRPP-PPYPFSLFS 301

Query: 353 GGF 355
           GGF
Sbjct: 302 GGF 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
TAIR|locus:2091762	330	HSFC1 "AT3G24520" [Arabidopsis	0.523	0.563	0.723	4.1e-79
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.540	0.410	0.448	4.5e-43
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.535	0.550	0.473	9.3e-43
TAIR|locus:2200171	374	HSFA8 "AT1G67970" [Arabidopsis	0.529	0.502	0.432	5.9e-41
TAIR|locus:2077249	282	AT-HSFA7B "AT3G63350" [Arabido	0.492	0.620	0.469	1.8e-39
TAIR|locus:2144603	412	HSFA3 "AT5G03720" [Arabidopsis	0.490	0.422	0.478	2.3e-39
TAIR|locus:2083690	272	HSFA7A "AT3G51910" [Arabidopsi	0.492	0.643	0.433	4.8e-39
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.473	0.339	0.475	1.3e-38
TAIR|locus:2170832	282	HSFA6A "AT5G43840" [Arabidopsi	0.461	0.581	0.481	8.9e-38
TAIR|locus:2094339	406	HSFA6B "AT3G22830" [Arabidopsi	0.442	0.386	0.512	8e-37

TAIR|locus:2091762 HSFC1 "AT3G24520" [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 4.1e-79, Sum P(2) = 4.1e-79
 Identities = 144/199 (72%), Positives = 166/199 (83%)

Query:     4 NNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSS 63
             NN NNVIAPF++KTYQMVNDP+TD LI+WG A+NSFIVVDPLDFSQRILPAYFKHNNFSS
Sbjct:     9 NNNNNVIAPFIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSS 68

Query:    64 FVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQD 123
             FVRQLNTYGFRKVDPD+WEFANE FLRGQKHLL NI RRKH+          RG  G QD
Sbjct:    69 FVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRKHA----------RGMYG-QD 117

Query:   124 LDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIM 183
             L+D EIV EI RL++EQ+ L+ E+Q MN+R+EATE+RPEQMMAFLYKVVEDPDLLPR+++
Sbjct:   118 LEDGEIVREIERLKEEQRELEAEIQRMNRRIEATEKRPEQMMAFLYKVVEDPDLLPRMML 177

Query:   184 EKESTTNRNNYYLGDKKRR 202
             EKE T  +    + DKK+R
Sbjct:   178 EKERTKQQQQ--VSDKKKR 194

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 96/214 (44%), Positives = 140/214 (65%)

Query:    10 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLN 69
             I PF+ KTY MV+DP TD ++SW   NNSF+V +  +F+++ LP YFKHNNFSSFVRQLN
Sbjct:    21 IPPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLN 80

Query:    70 TYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMR----------GGA 119
             TYGFRKVDPD+WEFANE FLRGQK +LK+IVRRK +  +      ++          G  
Sbjct:    81 TYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVGKF 140

Query:   120 G-DQDLD----DEEIVM-EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVE 173
             G +++++    D+ ++M E+ RLRQ+Q+  +  LQ + +++   E+R +QMM+FL K V+
Sbjct:   141 GLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKAVQ 200

Query:   174 DPDLLPRIIMEKESTTNRNNYYLGD--KKRRLMI 205
              P  L +   +    +N  N ++ +  KKRRL +
Sbjct:   201 SPGFLNQFSQQ----SNEANQHISESNKKRRLPV 230

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 97/205 (47%), Positives = 130/205 (63%)

Query:    12 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTY 71
             PF+ KTY+MV DP TD+++SW    NSF+V D   FS  +LP YFKH+NFSSF+RQLNTY
Sbjct:    44 PFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTY 103

Query:    72 GFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKH---------SSNRSAHHMMMRGGAGDQ 122
             GFRK+DPD+WEFANE FL GQKHLLKNI RR++          S  S   +   G  G+ 
Sbjct:   104 GFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQYGFDGEV 163

Query:   123 DL---DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLP 179
             +    D   +V E+ RLRQ+Q S   ++  M +RL  TE+R +QMM FL K + +P+ + 
Sbjct:   164 ERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNNPNFVQ 223

Query:   180 RI-IMEKESTTNRNNYYLGDKKRRL 203
             +  +M KE  +      +G +KRRL
Sbjct:   224 QFAVMSKEKKS-LFGLDVG-RKRRL 246

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2200171 HSFA8 "AT1G67970" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 87/201 (43%), Positives = 136/201 (67%)

Query:     4 NNTNNVIAPFVMKTYQMVNDPTTDSLISWG-KANNSFIVVDPLDFSQRILPAYFKHNNFS 62
             +++++ +APF+ K Y MV+D TTDS+ISW   A+NSF+++D   FS ++LP YFKH+NFS
Sbjct:    11 SSSSSSVAPFLRKCYDMVDDSTTDSIISWSPSADNSFVILDTTVFSVQLLPKYFKHSNFS 70

Query:    63 SFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKH--SSNRSAH------HMM 114
             SF+RQLN YGFRKVD D+WEFAN+ F+RGQK LLKN++RRK+  SS +S H      +  
Sbjct:    71 SFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQSSEQSKHESTSTTYAQ 130

Query:   115 MRGGAGDQ-DL---DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYK 170
              + G   + D+   D + +  E+ ++RQ Q+  D ++  +  R++  E   ++M++FL  
Sbjct:   131 EKSGLWKEVDILKGDKQVLAQELIKVRQYQEVTDTKMLHLEDRVQGMEESQQEMLSFLVM 190

Query:   171 VVEDPDLLPRIIMEKESTTNR 191
             V+++P LL +++  KE  T R
Sbjct:   191 VMKNPSLLVQLLQPKEKNTWR 211

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2077249 AT-HSFA7B "AT3G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 86/183 (46%), Positives = 122/183 (66%)

Query:    11 APFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNT 70
             +PF+ KT++MV DP T+ ++SW +   SF+V DP  FS  ILP YFKHNNFSSFVRQLNT
Sbjct:    27 SPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNT 86

Query:    71 YGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNR-SAHHMMMRGGAGDQDLD---- 125
             YGFRK++ ++WEF NE FL GQ+ LLK+I RR  SS+  S ++   +  A D  ++    
Sbjct:    87 YGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSSSPPSLNYSQSQPEAHDPGVELPQL 146

Query:   126 DEE---IVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRII 182
              EE   ++MEI+ LRQE++     +Q M +R+   E++   MM+FL + VE+P LL +I 
Sbjct:   147 REERHVLMMEISTLRQEEQRARGYVQAMEQRINGAEKKQRHMMSFLRRAVENPSLLQQIF 206

Query:   183 MEK 185
              +K
Sbjct:   207 EQK 209

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

TAIR|locus:2144603 HSFA3 "AT5G03720" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 88/184 (47%), Positives = 125/184 (67%)

Query:     8 NVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQ 67
             N I PF+ KT+ +V+DPT D +ISWG    SF+V DPL+F++ ILP  FKHNNFSSFVRQ
Sbjct:    51 NPIPPFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQ 110

Query:    68 LNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKH-SSNRS--AHHMMMRGG----AG 120
             LNTYGFRK+D DKWEFANE FLRG+KHLLKNI RR+   SN++  +     +G      G
Sbjct:   111 LNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQSNQTCCSSTSQSQGSPTEVGG 170

Query:   121 D-QDLDDEE--IVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDL 177
             + + L  E   ++ E+  L+Q+ +     +  +N+RL+A E+R +Q+++FL K+ ++   
Sbjct:   171 EIEKLRKERRALMEEMVELQQQSRGTARHVDTVNQRLKAAEQRQKQLLSFLAKLFQNRGF 230

Query:   178 LPRI 181
             L R+
Sbjct:   231 LERL 234

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2083690 HSFA7A "AT3G51910" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 78/180 (43%), Positives = 120/180 (66%)

Query:     8 NVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQ 67
             N   PF+ KT++MV+DP TD ++SW +   SF+V D   FS  +LP +FKH+NFSSF+RQ
Sbjct:    25 NAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKHSNFSSFIRQ 84

Query:    68 LNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK-HSSNRSAHHMMMRGGAGDQDLDD 126
             LNTYGFRK++ ++WEFANE FL GQ+ LLKNI RR   + + S  H        +   + 
Sbjct:    85 LNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNPFTPSSSPSH----DACNELRREK 140

Query:   127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKE 186
             + ++MEI  LRQ+Q++    ++ M +R+E TER+  QMM+FL + ++ P  L +++ +++
Sbjct:   141 QVLMMEIVSLRQQQQTTKSYIKAMEQRIEGTERKQRQMMSFLARAMQSPSFLHQLLKQRD 200

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0032268 "regulation of cellular protein metabolic process" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 86/181 (47%), Positives = 120/181 (66%)

Query:     5 NTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSF 64
             N N++  PF+ KTY MV DP TD+++SW   NNSFIV DP +FS+ +LP YFKHNNFSSF
Sbjct:    45 NANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSF 104

Query:    65 VRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK----H-SSNRSAHHMMMRGGA 119
             VRQLNTYGFRKVDPD+WEFANE FLRGQKHLLK I RRK    H SS+ +     +  G 
Sbjct:   105 VRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQ 164

Query:   120 GDQ-------DLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172
             G         ++    +  E+ +L++++  L +EL  + ++ + T+ + + ++  L +V+
Sbjct:   165 GSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHL-QVM 223

Query:   173 E 173
             E
Sbjct:   224 E 224

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2170832 HSFA6A "AT5G43840" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 80/166 (48%), Positives = 112/166 (67%)

Query:    13 FVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYG 72
             F+ KTY +V D +T++++SW + NNSFIV +P  F+   LP  FKHNNFSSFVRQLNTYG
Sbjct:    20 FLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYG 79

Query:    73 FRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVME 132
             F+K+D ++WEFANE FL+G++HLLKNI RRK SS      +   G   +   D   + +E
Sbjct:    80 FKKIDTERWEFANEHFLKGERHLLKNIKRRKTSSQTQTQSL--EGEIHELRRDRMALEVE 137

Query:   133 IARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLL 178
             + RLR++Q+S+   L  M ++L+ TE + E MM FL K ++ P  L
Sbjct:   138 LVRLRRKQESVKTYLHLMEEKLKVTEVKQEMMMNFLLKKIKKPSFL 183

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 85/166 (51%), Positives = 110/166 (66%)

Query:    12 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTY 71
             PF+ KTY +V D  T+ ++SW K+NNSFIV DP  FS  +LP +FKHNNFSSFVRQLNTY
Sbjct:    61 PFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTY 120

Query:    72 GFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVM 131
             GFRKV+PD+WEFANE FLRGQKHLLKNI RRK S+N  ++ M     +  Q LD+    +
Sbjct:   121 GFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNN--SNQMQQPQSSEQQSLDN--FCI 176

Query:   132 EIAR--LRQEQKSLDEELQGMNKRLEATERRPEQMMAFLY-KVVED 174
             E+ R  L  E  SL  + Q +   +E    R +Q    +Y  ++E+
Sbjct:   177 EVGRYGLDGEMDSLRRDKQVL--MMELVRLRQQQQSTKMYLTLIEE 220

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LV52	HSFC1_ARATH	No assigned EC number	0.705	0.5267	0.5666	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	355
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	7e-52
smart00415	105	smart00415, HSF, heat shock factor	2e-45
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	4e-31

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  166 bits (424), Expect = 7e-52
 Identities = 55/94 (58%), Positives = 70/94 (74%), Gaps = 2/94 (2%)

Query: 12  PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTY 71
           PF+ K Y+++ DP+ D +ISW +  NSFI+ DP +F++++LP YFKHNNFSSFVRQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 72  GFRKVDPDK--WEFANEWFLRGQKHLLKNIVRRK 103
           GF KV  D+  WEFA+  F RGQK LL  I RRK
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRK 94

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  150 bits (382), Expect = 2e-45
 Identities = 57/103 (55%), Positives = 72/103 (69%), Gaps = 11/103 (10%)

Query: 11  APFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNT 70
            PF+ K Y +V DP+TD +ISW  +  SF++ DP +F++ +LP YFKHNNFSSFVRQLN 
Sbjct: 3   PPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNM 62

Query: 71  YGFRKVDP-----------DKWEFANEWFLRGQKHLLKNIVRR 102
           YGFRKVDP           D+WEFAN  F+RGQ  LL+NI R+
Sbjct: 63  YGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105

Length = 105

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score =  118 bits (298), Expect = 4e-31
 Identities = 71/278 (25%), Positives = 116/278 (41%), Gaps = 30/278 (10%)

Query: 10  IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLN 69
              FV K YQ++ +P    LI W     SF+++DP +F++ ILP YFKH NF+SFVRQLN
Sbjct: 10  PKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLN 69

Query: 70  TYGFRKV----------DPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGA 119
            YGF KV          + + WEF N+ F  G   LLK I R+K  SNR           
Sbjct: 70  KYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVD--SNNESKD 127

Query: 120 GDQDLDDEEIVMEIARLRQEQKSLDEELQ-------GMNKRLEATERRPEQMMAFLYKVV 172
              +++ E I++  + L     SL    Q        + +      R  + + A L  + 
Sbjct: 128 AMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKEYNYRNLRTIDDINAMLADLS 187

Query: 173 EDPDLLPRIIMEKESTTNRNNYYLGD-KKRRLMISSSSQQQQQPSNS---SSSGMAASSS 228
             P          E   +      G  K+     S +  Q+ +P      S   +A S +
Sbjct: 188 MSP-------FADEHLKSFLQELFGAYKEVAEPQSPTQHQRGEPGQRFHNSVVPLADSKN 240

Query: 229 IKSEEEEVGNIGVISSSSPDSGFDNSNNNNSNNFCQSS 266
              ++ +     + ++ S D+  ++ ++   +    + 
Sbjct: 241 EVDQKGDGKVANLQNNLSLDTATNSDSHLTIDALSAAF 278

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
KOG0627	304	consensus Heat shock transcription factor [Transcr	100.0
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	100.0
smart00415	105	HSF heat shock factor.	100.0
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	100.0
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	96.1
smart00413	87	ETS erythroblast transformation specific domain. v	94.49
KOG3806	177	consensus Predicted transcription factor [Transcri	93.02
PF04340	225	DUF484: Protein of unknown function, DUF484; Inter	91.88
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	90.9
PF03310	121	Cauli_DNA-bind: Caulimovirus DNA-binding protein;	84.27
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	84.17
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	83.15
PRK10963	223	hypothetical protein; Provisional	82.99
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	82.96
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	80.51

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=100.00  E-value=3.5e-42  Score=330.57  Aligned_cols=179  Identities=42%  Similarity=0.692  Sum_probs=150.0

Q ss_pred             CCCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccC--CCCceEe
Q 018495            7 NNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVD--PDKWEFA   84 (355)
Q Consensus         7 ~~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~--pd~~eF~   84 (355)
                      ...+++|+.|||+||+|+++++||+|+++|++|||||+.+|++.+||+||||+||+|||||||+||||||+  +++|||+
T Consensus         9 ~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~   88 (304)
T KOG0627|consen    9 ASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFS   88 (304)
T ss_pred             cCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeec
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             cccccccccccccceeeccCCCCCccc--cccccCC----CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 018495           85 NEWFLRGQKHLLKNIVRRKHSSNRSAH--HMMMRGG----AGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEA--  156 (355)
Q Consensus        85 He~F~RG~~~LL~~IkRkk~~s~~~s~--~~q~~~~----~~~~~~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~--  156 (355)
                      |++|+||+++||++|+||+........  .......    .......+..+..++.+|+++++.|+.|+.+|+++.+.  
T Consensus        89 n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~  168 (304)
T KOG0627|consen   89 NPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALR  168 (304)
T ss_pred             ChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            999999999999999999998654321  1110000    00011245567788888888888888888888754433  


Q ss_pred             ------------HHHhHHHHHHHHHHhhcCCCcHHHHHhhh
Q 018495          157 ------------TERRPEQMMAFLYKVVEDPDLLPRIIMEK  185 (355)
Q Consensus       157 ------------~EqrqqqMm~FLakvvqnP~fl~~li~q~  185 (355)
                                  .++++++|+.|+++++..|.++.++....
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  209 (304)
T KOG0627|consen  169 ATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ  209 (304)
T ss_pred             HHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence                        35678899999999999999998887654

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=100.00  E-value=2.1e-35  Score=283.64  Aligned_cols=172  Identities=35%  Similarity=0.546  Sum_probs=139.5

Q ss_pred             CCCCCCCCCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccC-C-
Q 018495            1 MEPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVD-P-   78 (355)
Q Consensus         1 m~~~~~~~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~-p-   78 (355)
                      |..+.....++.|+.|||.||+|+++.++|+|+++|++|||+|++.|.+.|||+||||+||+|||||||+|||+||. . 
T Consensus         1 ~~~s~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~   80 (282)
T COG5169           1 MSMSSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKS   80 (282)
T ss_pred             CCCCcCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCc
Confidence            44555667888999999999999999999999999999999999999999999999999999999999999999997 1 


Q ss_pred             --------CCceEecccccccccccccceeeccCCCCCccccc---c-ccC-CCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 018495           79 --------DKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHM---M-MRG-GAGDQDLDDEEIVMEIARLRQEQKSLDE  145 (355)
Q Consensus        79 --------d~~eF~He~F~RG~~~LL~~IkRkk~~s~~~s~~~---q-~~~-~~~~~~~~~~~L~~EIerLKreq~~L~q  145 (355)
                              +.|||.|++|++|..++|++|+|+|..+.......   . +.. .....-..+..+..++.+|....+.++.
T Consensus        81 ~~~~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~S~l~~~~~~~~~  160 (282)
T COG5169          81 GQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLL  160 (282)
T ss_pred             ccccccchhheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCccccchhhhhhhchhcccCcchhHHhhhhHHHhh
Confidence                    24999999999999999999999887654322110   0 000 0011112455667788899999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495          146 ELQGMNKRLEATERRPEQMMAFLYKVV  172 (355)
Q Consensus       146 EL~~Lrqr~q~~EqrqqqMm~FLakvv  172 (355)
                      .+.+++..+..-..++..+.++|..+-
T Consensus       161 ~~~~lk~~~~~~~~~~~~~~~~l~~~s  187 (282)
T COG5169         161 YLNELKEYNYRNLRTIDDINAMLADLS  187 (282)
T ss_pred             hhccccchhhhcccccchhhhcccCcc
Confidence            999988887777777777888877765

>smart00415 HSF heat shock factor

Probab=100.00  E-value=2.4e-35  Score=245.26  Aligned_cols=94  Identities=61%  Similarity=1.111  Sum_probs=91.0

Q ss_pred             CCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccCC----------
Q 018495            9 VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDP----------   78 (355)
Q Consensus         9 ~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~p----------   78 (355)
                      .+|+|+.|||+||+|+++++||+|+++|++|+|+|+++|.+.|||+||+|++|+||+||||+|||+|+..          
T Consensus         1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~   80 (105)
T smart00415        1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT   80 (105)
T ss_pred             CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence            4799999999999999999999999999999999999999999999999999999999999999999875          


Q ss_pred             -CCceEecccccccccccccceeec
Q 018495           79 -DKWEFANEWFLRGQKHLLKNIVRR  102 (355)
Q Consensus        79 -d~~eF~He~F~RG~~~LL~~IkRk  102 (355)
                       +.|+|+|++|+||+++||..|+||
T Consensus        81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       81 SDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             CCceEEECcCccCcCHHHHHhCcCC
Confidence             789999999999999999999996

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=100.00  E-value=2.5e-35  Score=243.26  Aligned_cols=93  Identities=53%  Similarity=0.977  Sum_probs=81.8

Q ss_pred             hHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccCCC---------Cce
Q 018495           12 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPD---------KWE   82 (355)
Q Consensus        12 ~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~pd---------~~e   82 (355)
                      +||.|||+||+|++++++|+|+++|++|||+|+++|+++|||+||+|+||+||+||||+|||+|+..+         .|+
T Consensus         1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~   80 (103)
T PF00447_consen    1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE   80 (103)
T ss_dssp             HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred             ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence            59999999999999999999999999999999999999999999999999999999999999999743         399


Q ss_pred             EecccccccccccccceeeccC
Q 018495           83 FANEWFLRGQKHLLKNIVRRKH  104 (355)
Q Consensus        83 F~He~F~RG~~~LL~~IkRkk~  104 (355)
                      |+|++|+||++++|..|+|+++
T Consensus        81 f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   81 FYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             EEETT-BTTBCCCTTTS---TT
T ss_pred             ECCcCccCCCHHHHhhCccCCC
Confidence            9999999999999999999876

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=96.10  E-value=0.0035  Score=51.29  Aligned_cols=71  Identities=20%  Similarity=0.336  Sum_probs=51.4

Q ss_pred             HHHHHHhhcCCCCCCcEEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccCc----cccCCCCceEe
Q 018495           14 VMKTYQMVNDPTTDSLISWGK-ANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYGF----RKVDPDKWEFA   84 (355)
Q Consensus        14 l~KLy~mLed~~~~~iIsWs~-~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YGF----rKv~pd~~eF~   84 (355)
                      ..=|.++|+|++..++|+|.. ++.-|.|.|++++++.-=- +--...+|.++-|-|..|.=    .||...+..|.
T Consensus         5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy~k~il~kv~g~r~~Y~   81 (85)
T PF00178_consen    5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYYKKGILEKVKGQRLVYR   81 (85)
T ss_dssp             HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHHHTTSEEEETTSTTEEE
T ss_pred             HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHhhCCeEEecCCcEEEEe
Confidence            345788999999999999999 9999999999999874311 22345689999999977632    24444555543

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>smart00413 ETS erythroblast transformation specific domain

Probab=94.49  E-value=0.054  Score=44.83  Aligned_cols=57  Identities=21%  Similarity=0.385  Sum_probs=44.9

Q ss_pred             HHHHHhhcCCCCCCcEEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhccc
Q 018495           15 MKTYQMVNDPTTDSLISWGK-ANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTY   71 (355)
Q Consensus        15 ~KLy~mLed~~~~~iIsWs~-~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~Y   71 (355)
                      .=|.++|.|+++.++|+|.. ++.-|.+.|+++.++.-=. +-=...+|..+-|-|..|
T Consensus         6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyy   64 (87)
T smart00413        6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYY   64 (87)
T ss_pred             HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Confidence            34789999999999999998 6889999999988774322 222357899999998776

variation of the helix-turn-helix motif

>KOG3806 consensus Predicted transcription factor [Transcription]

Probab=93.02  E-value=0.17  Score=46.80  Aligned_cols=66  Identities=17%  Similarity=0.276  Sum_probs=50.9

Q ss_pred             CCCCCChHHHHHHHhhcCCCCCCcEEEcC-CCCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhccc
Q 018495            6 TNNVIAPFVMKTYQMVNDPTTDSLISWGK-ANNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTY   71 (355)
Q Consensus         6 ~~~~~p~Fl~KLy~mLed~~~~~iIsWs~-~G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~Y   71 (355)
                      ..++.-.-..=|-++|+|++..++|+|.. +|--|++.||++-++..=-+ -=.+-||.-.-|-|..|
T Consensus        64 ~~sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy  131 (177)
T KOG3806|consen   64 SGSGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY  131 (177)
T ss_pred             CCCchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence            34454555666788999999999999998 78789999999999864333 22367888888888765

>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function

Probab=91.88  E-value=0.59  Score=43.62  Aligned_cols=77  Identities=16%  Similarity=0.241  Sum_probs=44.6

Q ss_pred             ecccccccccccccceeeccCCCCCccccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018495           84 ANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQ  163 (355)
Q Consensus        84 ~He~F~RG~~~LL~~IkRkk~~s~~~s~~~q~~~~~~~~~~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqqq  163 (355)
                      .||.|...+++||..|+=.-+..                 ..-.-.+.++++|++++..|+.+|..|-..-+.-++..++
T Consensus        17 ~~PdFf~~~~~ll~~l~~ph~~~-----------------~avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~   79 (225)
T PF04340_consen   17 QHPDFFERHPELLAELRLPHPSG-----------------GAVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQR   79 (225)
T ss_dssp             -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCcHHHHhCHHHHHHcCCCCCCC-----------------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999887422211                 1233556799999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCc
Q 018495          164 MMAFLYKVVEDPDL  177 (355)
Q Consensus       164 Mm~FLakvvqnP~f  177 (355)
                      +..+..+++.-.++
T Consensus        80 ~~~l~l~LL~a~sl   93 (225)
T PF04340_consen   80 LHRLVLALLAARSL   93 (225)
T ss_dssp             HHHHHHHHHC--SH
T ss_pred             HHHHHHHHhcCCCH
Confidence            99999999987665

; PDB: 3E98_B.

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=90.90  E-value=2.8  Score=44.19  Aligned_cols=42  Identities=21%  Similarity=0.319  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018495          126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAF  167 (355)
Q Consensus       126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~F  167 (355)
                      ...+..+++.|.++++.|.+|..+|++|.....+++++-++-
T Consensus        68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~  109 (472)
T TIGR03752        68 VKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS  109 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            446777788888888888888888888777777776665544

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part

Probab=84.27  E-value=2.7  Score=36.86  Aligned_cols=56  Identities=27%  Similarity=0.464  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCcHHHHHhhhh
Q 018495          128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKE  186 (355)
Q Consensus       128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~fl~~li~q~e  186 (355)
                      .+..||..|..++..+...|.+|-++++.+++..++|.++-|++++|   +...|.+-+
T Consensus         3 ~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCe   58 (121)
T PF03310_consen    3 TIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCE   58 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-T
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhch
Confidence            35678999999999999999999889888888889999999999988   555566554

A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.17  E-value=2.9  Score=33.74  Aligned_cols=34  Identities=35%  Similarity=0.503  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018495          128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRP  161 (355)
Q Consensus       128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrq  161 (355)
                      -|..||+.||+.++.|.+|...++...+.+++.-
T Consensus        22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~en   55 (79)
T COG3074          22 LLQMEIEELKEKNNSLSQEVQNAQHQREALEREN   55 (79)
T ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999998776666555443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=83.15  E-value=6.9  Score=31.21  Aligned_cols=41  Identities=22%  Similarity=0.328  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495          128 EIVMEIARLRQE-------QKSLDEELQGMNKRLEATERRPEQMMAFL  168 (355)
Q Consensus       128 ~L~~EIerLKre-------q~~L~qEL~~Lrqr~q~~EqrqqqMm~FL  168 (355)
                      .|..+++.||++       +..|..|...|++.+...+.++..|+.-|
T Consensus        22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl   69 (72)
T PF06005_consen   22 LLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455666666666       45555555555555555555665555443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK10963 hypothetical protein; Provisional

Probab=82.99  E-value=4.9  Score=37.89  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             ecccccccccccccceeeccCCCCCccccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018495           84 ANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQ  163 (355)
Q Consensus        84 ~He~F~RG~~~LL~~IkRkk~~s~~~s~~~q~~~~~~~~~~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqqq  163 (355)
                      .||.|.-.+++||..|+=.-+...                 .-.-.+-++++|++++..|+.+|..|-..-+.-+...++
T Consensus        14 ~~PdFf~~h~~Ll~~L~lph~~~g-----------------aVSL~ErQ~~~LR~r~~~Le~~l~~Li~~A~~Ne~l~~~   76 (223)
T PRK10963         14 QNPDFFIRNARLVEQMRVPHPVRG-----------------TVSLVEWQMARQRNHIHVLEEEMTLLMEQAIANEDLFYR   76 (223)
T ss_pred             HCchHHhhCHHHHHhccCCCCCCC-----------------eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999997754322110                 122456789999999999999999998887777888888


Q ss_pred             HHHHHHHhhcCCCc
Q 018495          164 MMAFLYKVVEDPDL  177 (355)
Q Consensus       164 Mm~FLakvvqnP~f  177 (355)
                      +.....+++.-.++
T Consensus        77 ~~~l~l~Ll~a~~~   90 (223)
T PRK10963         77 LLPLQSRLAAADSL   90 (223)
T ss_pred             HHHHHHHHhcCCCH
Confidence            88888888876655

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=82.96  E-value=8.4  Score=29.52  Aligned_cols=45  Identities=16%  Similarity=0.346  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018495          127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKV  171 (355)
Q Consensus       127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakv  171 (355)
                      .+|+.++.+|.-....+..|+..+++.++.+++..+.||..-.-|
T Consensus         3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~V   47 (55)
T PF05377_consen    3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVV   47 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888888888888999999999999999998888887754443

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=80.51  E-value=6.6  Score=36.04  Aligned_cols=47  Identities=17%  Similarity=0.403  Sum_probs=31.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018495          125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKV  171 (355)
Q Consensus       125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakv  171 (355)
                      ++..+..+++.|+.++..|..|+..|.+++...+...+.|+.-+-++
T Consensus       105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA  151 (161)
T TIGR02894       105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA  151 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566667777777777777777777777777777666666655443

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	355
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		2e-21
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		2e-14
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		4e-14
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		7e-14
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		8e-14
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		3e-13
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		4e-13
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		5e-13

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 67/107 (62%), Gaps = 11/107 (10%)
Query: 10  IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLN 69
           +  F+ K + +V+DP TD+LI W  + NSF V D   F++ +LP YFKHNN +SFVRQLN
Sbjct: 17  VPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLN 76
Query: 70  TYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHS 105
            YGFRKV           + D  EF +  FLRGQ+ LL+NI R+  S
Sbjct: 77  MYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTS 123

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 10/103 (9%)
Query: 10  IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLN 69
           +  F+ K +++V+D  T+ LI W K   SF++ +   F++ +LP  +KHNN +SF+RQLN
Sbjct: 4   VPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLN 63
Query: 70  TYGFRKV----------DPDKWEFANEWFLRGQKHLLKNIVRR 102
            YGF K+          D D+ EF++ +F R    LL  I R+
Sbjct: 64  MYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 11/86 (12%)
Query: 12 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTY 71
           FV K + MVND + +  I W  +  S +V +   F Q +LP YFKH+NF+SFVRQLN Y
Sbjct: 14 AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMY 73
Query: 72 GFRKV-----------DPDKWEFANE 86
          G+ KV           +  +WEF NE
Sbjct: 74 GWHKVQDVKSGSMLSNNDSRWEFENE 99

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 11/85 (12%)
Query: 13 FVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYG 72
          FV K + MVND + +  I W  +  S +V +   F Q +LP YFKH+NF+SFVRQLN YG
Sbjct: 5  FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYG 64
Query: 73 FRKV-----------DPDKWEFANE 86
          + KV           +  +WEF NE
Sbjct: 65 WHKVQDVKSGSMLSNNDSRWEFENE 89

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 11/85 (12%)
Query: 13 FVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYG 72
          FV K + MVND + +  I W  +  S +V +   F Q +LP YFKH+NF+SFVRQLN YG
Sbjct: 3  FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYG 62
Query: 73 FRKV-----------DPDKWEFANE 86
          + KV           +  +WEF NE
Sbjct: 63 WHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 11/85 (12%)
Query: 13 FVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYG 72
          FV K +  VND + +  I W  +  S +V +   F Q +LP YFKH+NF+SFVRQLN YG
Sbjct: 5  FVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNXYG 64
Query: 73 FRKV-----------DPDKWEFANE 86
          + KV           +  +WEF NE
Sbjct: 65 WHKVQDVKSGSXLSNNDSRWEFENE 89

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 11/86 (12%)
Query: 12 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTY 71
           FV K + MVND + +  I W  +  S +V +   F Q +L  YFKH+NF+SFVRQLN Y
Sbjct: 2  AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNMY 61
Query: 72 GFRKV-----------DPDKWEFANE 86
          G+ KV           +  +WEF NE
Sbjct: 62 GWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 11/86 (12%)
Query: 12 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTY 71
           FV K + MVND + +  I W  +  S +V +   F Q +L  YFKH+NF+SFVRQLN Y
Sbjct: 2  AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNMY 61
Query: 72 GFRKV-----------DPDKWEFANE 86
          G+ KV           +  +WEF NE
Sbjct: 62 GWHKVQDVKSGSMLSNNDSRWEFENE 87
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
1hks_A	106	Heat-shock transcription factor; transcription reg	1e-51
2ldu_A	125	Heat shock factor protein 1; structural genomics,	9e-51
3hts_B	102	Heat shock transcription factor; transcription reg	2e-40

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score =  166 bits (422), Expect = 1e-51
 Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 10/105 (9%)

Query: 8   NVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQ 67
           + +  F+ K +++V+D  T+ LI W K   SF++ +   F++ +LP  +KHNN +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 68  LNTYGFRKV----------DPDKWEFANEWFLRGQKHLLKNIVRR 102
           LN YGF K+          D D+ EF++ +F R    LL  I R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score =  164 bits (417), Expect = 9e-51
 Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 11/109 (10%)

Query: 10  IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLN 69
           +  F+ K + +V+DP TD+LI W  + NSF V D   F++ +LP YFKHNN +SFVRQLN
Sbjct: 17  VPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLN 76

Query: 70  TYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHSSN 107
            YGFRKV           + D  EF +  FLRGQ+ LL+NI R+  S +
Sbjct: 77  MYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVS 125

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score =  137 bits (346), Expect = 2e-40
 Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 2   EPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNF 61
             +  +     FV K + MVND + +  I W  +  S +V +   F Q +LP YFKH+NF
Sbjct: 4   RASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNF 63

Query: 62  SSFVRQLNTYGFRKV-----------DPDKWEFANEWF 88
           +SFVRQLN YG+ KV           +  +WEF NE  
Sbjct: 64  ASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
1hks_A	106	Heat-shock transcription factor; transcription reg	100.0
2ldu_A	125	Heat shock factor protein 1; structural genomics,	100.0
3hts_B	102	Heat shock transcription factor; transcription reg	99.97
4avp_A	106	ETS translocation variant 1; transcription, transc	95.0
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	92.33
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	92.29
1awc_A	110	Protein (GA binding protein alpha); complex (trans	91.82
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	91.39
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	89.27
1wwx_A	107	E74-like factor 5 ESE-2B; DNA binding, transcripti	87.91
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	87.2
2dao_A	118	Transcription factor ETV6; ETS domain, structural	86.89
1hbx_G	157	ETS-domain protein ELK-4; gene regulation, transcr	86.81
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	86.7
3e98_A	252	GAF domain of unknown function; structural genomic	86.1
1yo5_C	97	SAM pointed domain containing ETS transcription fa	82.82
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	82.03
2lf8_A	128	Transcription factor ETV6; auto-inhibition; NMR {M	81.12

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=100.00  E-value=2.1e-40  Score=275.71  Aligned_cols=96  Identities=39%  Similarity=0.782  Sum_probs=92.3

Q ss_pred             CCCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccC---------
Q 018495            7 NNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVD---------   77 (355)
Q Consensus         7 ~~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~---------   77 (355)
                      +.++|+||.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||||+||+|||||||+|||+||.         
T Consensus         1 g~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~   80 (106)
T 1hks_A            1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRF   80 (106)
T ss_dssp             CTTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSC
T ss_pred             CCCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999984         


Q ss_pred             -CCCceEecccccccccccccceeec
Q 018495           78 -PDKWEFANEWFLRGQKHLLKNIVRR  102 (355)
Q Consensus        78 -pd~~eF~He~F~RG~~~LL~~IkRk  102 (355)
                       ++.|||+||+|+||+++||.+|+||
T Consensus        81 ~~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           81 DRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCCceEEECcCccCcCHHHHhhCcCC
Confidence             5789999999999999999999997

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=100.00  E-value=2.3e-39  Score=277.19  Aligned_cols=101  Identities=50%  Similarity=0.848  Sum_probs=95.8

Q ss_pred             CCCCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccC--------
Q 018495            6 TNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVD--------   77 (355)
Q Consensus         6 ~~~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~--------   77 (355)
                      ....+++||.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||||+||+|||||||+|||+||.        
T Consensus        13 ~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~   92 (125)
T 2ldu_A           13 GPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLV   92 (125)
T ss_dssp             SSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSS
T ss_pred             cCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccc
Confidence            357899999999999999999999999999999999999999999999999999999999999999999983        


Q ss_pred             ---CCCceEecccccccccccccceeeccCCC
Q 018495           78 ---PDKWEFANEWFLRGQKHLLKNIVRRKHSS  106 (355)
Q Consensus        78 ---pd~~eF~He~F~RG~~~LL~~IkRkk~~s  106 (355)
                         ++.|||+||+|+||+++||.+|+||+++.
T Consensus        93 ~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~~  124 (125)
T 2ldu_A           93 KPERDDTEFQHPCFLRGQEQLLENIKRKVTSV  124 (125)
T ss_dssp             SCSSCCEEEECTTCBTTBGGGTTTSCCCTTSC
T ss_pred             cCCCCccEEECccccCCCHHHHhhCcCCCCCC
Confidence               47899999999999999999999998753

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.97  E-value=2.7e-33  Score=232.59  Aligned_cols=83  Identities=45%  Similarity=0.819  Sum_probs=77.8

Q ss_pred             CCCCCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccC-------
Q 018495            5 NTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVD-------   77 (355)
Q Consensus         5 ~~~~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~-------   77 (355)
                      .....+|+||.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||||+||+||+||||+|||+||.       
T Consensus         7 ~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~   86 (102)
T 3hts_B            7 VGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSM   86 (102)
T ss_dssp             ---CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC-------
T ss_pred             CCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcc
Confidence            3457899999999999999999999999999999999999999999999999999999999999999999997       


Q ss_pred             ----CCCceEeccc
Q 018495           78 ----PDKWEFANEW   87 (355)
Q Consensus        78 ----pd~~eF~He~   87 (355)
                          +++|||+||+
T Consensus        87 ~~~~~~~wEF~n~~  100 (102)
T 3hts_B           87 LSNNDSRWEFENER  100 (102)
T ss_dssp             --CCSCCEEEEECC
T ss_pred             cCCCcCCeEecCCC
Confidence                7899999986

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=95.00  E-value=0.016  Score=48.30  Aligned_cols=84  Identities=18%  Similarity=0.355  Sum_probs=58.8

Q ss_pred             CCCCCCCCCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccC----ccc
Q 018495            1 MEPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYG----FRK   75 (355)
Q Consensus         1 m~~~~~~~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YG----FrK   75 (355)
                      |-|..++.+.-....=|.++|+|++..++|+|...+..|.+.|+++.++.-=. +-=..-+|..+-|-|..|-    .+|
T Consensus         2 ~~~~~~~~g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~K   81 (106)
T 4avp_A            2 MGPTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQK   81 (106)
T ss_dssp             ---------CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred             CCCCCCCCCcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEe
Confidence            56777777777788889999999999999999998889999999988874332 1224678999999997763    246


Q ss_pred             cCCCCceEe
Q 018495           76 VDPDKWEFA   84 (355)
Q Consensus        76 v~pd~~eF~   84 (355)
                      |...+..|.
T Consensus        82 v~G~r~vYk   90 (106)
T 4avp_A           82 VAGERYVYK   90 (106)
T ss_dssp             CTTCSSEEE
T ss_pred             cCCCeEEEE
Confidence            666666666

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=92.33  E-value=0.097  Score=43.25  Aligned_cols=78  Identities=17%  Similarity=0.281  Sum_probs=56.9

Q ss_pred             CCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccC----ccccCCCCce
Q 018495            8 NVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYG----FRKVDPDKWE   82 (355)
Q Consensus         8 ~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YG----FrKv~pd~~e   82 (355)
                      ++.-....=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=.+ -=..-+|..+-|-|..|-    .+||...+..
T Consensus         5 ~g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~v   84 (102)
T 2ypr_A            5 SGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYA   84 (102)
T ss_dssp             CSSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSE
T ss_pred             CCcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence            33444566688999999999999999888999999999888743221 114678999999997763    2355555666


Q ss_pred             Eec
Q 018495           83 FAN   85 (355)
Q Consensus        83 F~H   85 (355)
                      |..
T Consensus        85 YkF   87 (102)
T 2ypr_A           85 YRF   87 (102)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            653

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=92.29  E-value=0.085  Score=43.37  Aligned_cols=64  Identities=20%  Similarity=0.294  Sum_probs=49.1

Q ss_pred             CCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccC
Q 018495            9 VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYG   72 (355)
Q Consensus         9 ~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YG   72 (355)
                      +.-....=|.++|+|++..++|+|..++.-|.+.|+++.++..=.+ -=..-||...-|-|..|-
T Consensus         4 g~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY   68 (98)
T 1fli_A            4 GQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             SSCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             CceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence            3344556677889999999999999988899999999888754322 214678899999887763

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=91.82  E-value=0.074  Score=44.58  Aligned_cols=70  Identities=19%  Similarity=0.243  Sum_probs=52.1

Q ss_pred             HHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccCcc----ccCCCCceEe
Q 018495           15 MKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYGFR----KVDPDKWEFA   84 (355)
Q Consensus        15 ~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YGFr----Kv~pd~~eF~   84 (355)
                      .=|.++|+|++..++|+|...+.-|.+.|+++.++..=.+ -=..-||...-|-|..|-=+    ||...+..|.
T Consensus         5 qFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~   79 (110)
T 1awc_A            5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK   79 (110)
T ss_dssp             HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEE
T ss_pred             HHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEe
Confidence            3467899999999999999988999999999988754332 22356799999999877422    4444455665

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=91.39  E-value=0.059  Score=43.91  Aligned_cols=74  Identities=16%  Similarity=0.306  Sum_probs=55.9

Q ss_pred             hHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccC---c-cccCCCCceEec
Q 018495           12 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYG---F-RKVDPDKWEFAN   85 (355)
Q Consensus        12 ~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YG---F-rKv~pd~~eF~H   85 (355)
                      ....=|.++|+|++..++|+|...+.-|.+.|+++.++.-=. +-=..-+|...-|-|..|-   . +||...+..|..
T Consensus         6 ~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~F   84 (93)
T 1bc8_C            6 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF   84 (93)
T ss_dssp             CHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEEE
T ss_pred             cHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence            455668899999999999999988789999999998885433 2224678999999998774   2 255555667764

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=89.27  E-value=0.19  Score=43.97  Aligned_cols=78  Identities=18%  Similarity=0.241  Sum_probs=59.0

Q ss_pred             CCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccCcc----ccCCCCce
Q 018495            8 NVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYGFR----KVDPDKWE   82 (355)
Q Consensus         8 ~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YGFr----Kv~pd~~e   82 (355)
                      ++......=|.++|+|++..++|+|...+.-|.+.|+++.++..=.+ -=..-||...-|-|..|-=+    ||...+..
T Consensus        37 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrlv  116 (146)
T 1gvj_A           37 SGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV  116 (146)
T ss_dssp             CCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSE
T ss_pred             CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence            45556667788999999999999999999999999999998854332 22357899999999887433    55555666


Q ss_pred             Eec
Q 018495           83 FAN   85 (355)
Q Consensus        83 F~H   85 (355)
                      |..
T Consensus       117 Y~F  119 (146)
T 1gvj_A          117 YRF  119 (146)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            663

>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=87.91  E-value=0.36  Score=40.23  Aligned_cols=78  Identities=13%  Similarity=0.212  Sum_probs=56.5

Q ss_pred             CCCCCChHHHHHHHhhcCCC-CCCcEEEcC-CCCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccC----ccccCC
Q 018495            6 TNNVIAPFVMKTYQMVNDPT-TDSLISWGK-ANNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYG----FRKVDP   78 (355)
Q Consensus         6 ~~~~~p~Fl~KLy~mLed~~-~~~iIsWs~-~G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YG----FrKv~p   78 (355)
                      .+++......=|.++|.|++ ..++|+|.. +..-|.+.|+++.++.-=.+ -=...+|...-|-|..|-    .+||. 
T Consensus         4 g~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv~-   82 (107)
T 1wwx_A            4 GSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD-   82 (107)
T ss_dssp             CCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECCS-
T ss_pred             CCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecc-
Confidence            35666778888999999986 568999986 46789999999988853221 113678999999998773    23553 


Q ss_pred             CCceEe
Q 018495           79 DKWEFA   84 (355)
Q Consensus        79 d~~eF~   84 (355)
                      .+..|.
T Consensus        83 ~rlvY~   88 (107)
T 1wwx_A           83 RRLVYK   88 (107)
T ss_dssp             SSSEEE
T ss_pred             ceEEEE
Confidence            556665

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21

Probab=87.20  E-value=0.3  Score=40.33  Aligned_cols=72  Identities=13%  Similarity=0.239  Sum_probs=50.5

Q ss_pred             HHHHHHHhhcCCC-CCCcEEEcCC-CCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccC----ccccCCCCceEe
Q 018495           13 FVMKTYQMVNDPT-TDSLISWGKA-NNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYG----FRKVDPDKWEFA   84 (355)
Q Consensus        13 Fl~KLy~mLed~~-~~~iIsWs~~-G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YG----FrKv~pd~~eF~   84 (355)
                      ...=|.++|.|++ ..++|+|... ..-|.+.|+++.++.-=.+ -=...+|..+-|-|..|-    .+||...+..|.
T Consensus         7 LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~   85 (103)
T 3jtg_A            7 LWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK   85 (103)
T ss_dssp             HHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEE
T ss_pred             HHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEE
Confidence            4455778899987 5689999974 5589999999888753221 114678999999997772    234555556655

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.89  E-value=0.92  Score=38.39  Aligned_cols=77  Identities=19%  Similarity=0.324  Sum_probs=57.1

Q ss_pred             CCCChHHHHHHHhhcCCCCCCcEEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhccc---C-ccccCCCCc
Q 018495            8 NVIAPFVMKTYQMVNDPTTDSLISWGK-ANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTY---G-FRKVDPDKW   81 (355)
Q Consensus         8 ~~~p~Fl~KLy~mLed~~~~~iIsWs~-~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~Y---G-FrKv~pd~~   81 (355)
                      .+....-.=|.++|+|+++.++|+|.. ++.-|.+.|+++.++..=. +-=..-||...-|-|..|   | -+||...+.
T Consensus         6 ~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~   85 (118)
T 2dao_A            6 SGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRL   85 (118)
T ss_dssp             CCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSS
T ss_pred             CcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeE
Confidence            344556677889999999999999987 4558999999988875433 222457899999999887   3 335555666


Q ss_pred             eEe
Q 018495           82 EFA   84 (355)
Q Consensus        82 eF~   84 (355)
                      .|.
T Consensus        86 vY~   88 (118)
T 2dao_A           86 LFR   88 (118)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            666

>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21

Probab=86.81  E-value=0.19  Score=44.49  Aligned_cols=74  Identities=16%  Similarity=0.301  Sum_probs=55.7

Q ss_pred             hHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccCc----cccCCCCceEec
Q 018495           12 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYGF----RKVDPDKWEFAN   85 (355)
Q Consensus        12 ~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YGF----rKv~pd~~eF~H   85 (355)
                      ....=|.++|.|++..++|+|...+.-|.+.|+++.++..=. +-=..-+|...-|-|..|-=    +||...+..|..
T Consensus         7 ~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF   85 (157)
T 1hbx_G            7 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF   85 (157)
T ss_dssp             CHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEE
T ss_pred             cHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEee
Confidence            345567789999999999999988889999999998886433 22246789999999988742    245556666664

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=86.70  E-value=0.66  Score=41.51  Aligned_cols=76  Identities=18%  Similarity=0.265  Sum_probs=56.9

Q ss_pred             CCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccCcc----ccCCCCceE
Q 018495            9 VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYGFR----KVDPDKWEF   83 (355)
Q Consensus         9 ~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YGFr----Kv~pd~~eF   83 (355)
                      +.-....=|.++|+|++..++|+|...+.-|.+.|+++.++..=.+ -=..-||...-|-|..|-=+    ||...+..|
T Consensus        63 g~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~GkrlvY  142 (171)
T 2nny_A           63 GPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVY  142 (171)
T ss_dssp             SSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTTEE
T ss_pred             CceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeEEE
Confidence            3444556678999999999999999999999999999998854332 22357899999999887534    455555666


Q ss_pred             e
Q 018495           84 A   84 (355)
Q Consensus        84 ~   84 (355)
                      .
T Consensus       143 ~  143 (171)
T 2nny_A          143 R  143 (171)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}

Probab=86.10  E-value=1.8  Score=40.29  Aligned_cols=81  Identities=9%  Similarity=0.158  Sum_probs=44.6

Q ss_pred             ceEecccccccccccccceeeccCCCCCccccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495           81 WEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERR  160 (355)
Q Consensus        81 ~eF~He~F~RG~~~LL~~IkRkk~~s~~~s~~~q~~~~~~~~~~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr  160 (355)
                      |-=.||.|.-.+++||..|+=.-+...                 .-.-.+-++++|++++..|+.+|..|-..-..-++.
T Consensus        39 yL~~~PdFf~~~~~Ll~~L~lph~~~~-----------------aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l  101 (252)
T 3e98_A           39 YLSQHPEFFVEHDELIPELRIPHQPGD-----------------AVSLVERQVRLLRERNIEMRHRLSQLMDVARENDRL  101 (252)
T ss_dssp             ---------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHhhCHHHHHhCCCCCCCCC-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334899999999999998865333211                 123455789999999999999999999988888888


Q ss_pred             HHHHHHHHHHhhcCCCcH
Q 018495          161 PEQMMAFLYKVVEDPDLL  178 (355)
Q Consensus       161 qqqMm~FLakvvqnP~fl  178 (355)
                      .+++..+..+++.-.++-
T Consensus       102 ~~~~~~l~l~LL~a~sl~  119 (252)
T 3e98_A          102 FDKTRRLVLDLLDATSLE  119 (252)
T ss_dssp             HHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHHHHHhcCCCHH
Confidence            999999988888766653

>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21

Probab=82.82  E-value=0.51  Score=38.62  Aligned_cols=67  Identities=12%  Similarity=0.137  Sum_probs=50.3

Q ss_pred             CCCChHHHHHHHhhcCCC-CCCcEEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccCcc
Q 018495            8 NVIAPFVMKTYQMVNDPT-TDSLISWGK-ANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYGFR   74 (355)
Q Consensus         8 ~~~p~Fl~KLy~mLed~~-~~~iIsWs~-~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YGFr   74 (355)
                      ++.-....=|.++|+|++ ..++|+|.. ++.-|.+.|+++.++..=. +-=..-||...-|-|..|--+
T Consensus         8 ~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~   77 (97)
T 1yo5_C            8 SQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK   77 (97)
T ss_dssp             -CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred             CCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhc
Confidence            445556777899999986 478999984 5778999999988885332 222467899999999888544

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=82.03  E-value=1.9  Score=31.46  Aligned_cols=30  Identities=20%  Similarity=0.400  Sum_probs=15.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495          125 DDEEIVMEIARLRQEQKSLDEELQGMNKRL  154 (355)
Q Consensus       125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~  154 (355)
                      +-+.|..|++.||.+.+.|..++..++.++
T Consensus        20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l   49 (53)
T 2yy0_A           20 EIELLRLELAEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555555555544

>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}

Probab=81.12  E-value=0.35  Score=41.44  Aligned_cols=58  Identities=21%  Similarity=0.375  Sum_probs=41.1

Q ss_pred             HHHHHhhcCCCCCCcEEEcCC-CCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccC
Q 018495           15 MKTYQMVNDPTTDSLISWGKA-NNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYG   72 (355)
Q Consensus        15 ~KLy~mLed~~~~~iIsWs~~-G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YG   72 (355)
                      .=|.++|+|+++.++|+|... +.-|.+.|+++.++..=.+ -=+.-||...-|-|..|-
T Consensus         9 qFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY   68 (128)
T 2lf8_A            9 DYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYY   68 (128)
Confidence            446788999999999999874 4589999998777743221 112356777777776663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	355
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	4e-39
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	5e-33

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  132 bits (334), Expect = 4e-39
 Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 10/105 (9%)

Query: 8   NVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQ 67
           + +  F+ K +++V+D  T+ LI W K   SF++ +   F++ +LP  +KHNN +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 68  LNTYGFRKV----------DPDKWEFANEWFLRGQKHLLKNIVRR 102
           LN YGF K+          D D+ EF++ +F R    LL  I R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score =  116 bits (291), Expect = 5e-33
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 11/86 (12%)

Query: 12 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTY 71
           FV K + MVND + +  I W  +  S +V +   F Q +LP YFKH+NF+SFVRQLN Y
Sbjct: 4  AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMY 63

Query: 72 GFRKV-----------DPDKWEFANE 86
          G+ KV           +  +WEF NE
Sbjct: 64 GWHKVQDVKSGSMLSNNDSRWEFENE 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	355
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	100.0
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.96
d1pp7u_	114	39 kda initiator binding protein, IBP39, N-termina	93.78
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	93.31
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	93.26
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	91.83
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	91.36
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	90.37
d1puee_	88	Transcription factor PU.1, residues 171-259 {Mouse	85.82
d1wwxa1	94	E74-like factor 5 ese-2b {Human (Homo sapiens) [Ta	85.04
d1yo5c1	88	Sam pointed domain containing ets transcription SP	82.92

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=3e-37  Score=254.38  Aligned_cols=96  Identities=39%  Similarity=0.782  Sum_probs=91.4

Q ss_pred             CCCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccC---------
Q 018495            7 NNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVD---------   77 (355)
Q Consensus         7 ~~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~---------   77 (355)
                      +.++|+||.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||+|++|+||+||||+|||+||.         
T Consensus         1 g~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~   80 (106)
T d1hksa_           1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRF   80 (106)
T ss_dssp             CTTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSC
T ss_pred             CCCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999984         


Q ss_pred             -CCCceEecccccccccccccceeec
Q 018495           78 -PDKWEFANEWFLRGQKHLLKNIVRR  102 (355)
Q Consensus        78 -pd~~eF~He~F~RG~~~LL~~IkRk  102 (355)
                       ++.++|+|++|+||+++||..|+||
T Consensus        81 ~~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          81 DRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCCccEEECccccCCCHHHHhhCcCC
Confidence             4578999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.96  E-value=4.3e-31  Score=213.58  Aligned_cols=78  Identities=47%  Similarity=0.891  Sum_probs=74.1

Q ss_pred             CChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccC-----------C
Q 018495           10 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVD-----------P   78 (355)
Q Consensus        10 ~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~-----------p   78 (355)
                      .|+||.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||+|++|+||+||||+|||+||.           +
T Consensus         2 ~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~   81 (92)
T d2htsa_           2 RPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNND   81 (92)
T ss_dssp             CCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CC
T ss_pred             CCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999984           4


Q ss_pred             CCceEeccc
Q 018495           79 DKWEFANEW   87 (355)
Q Consensus        79 d~~eF~He~   87 (355)
                      +.|||+|+.
T Consensus        82 ~~~eF~h~~   90 (92)
T d2htsa_          82 SRWEFENER   90 (92)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEEecCC
Confidence            579999984

>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: 39 kda initiator binding protein, IBP39, N-terminal domain
domain: 39 kda initiator binding protein, IBP39, N-terminal domain
species: Trichomonas vaginalis [TaxId: 5722]

Probab=93.78  E-value=0.014  Score=47.23  Aligned_cols=76  Identities=14%  Similarity=0.254  Sum_probs=55.2

Q ss_pred             CCChHHHHHHHhhcC----CCCCC--cEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccCCC---
Q 018495            9 VIAPFVMKTYQMVND----PTTDS--LISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPD---   79 (355)
Q Consensus         9 ~~p~Fl~KLy~mLed----~~~~~--iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~pd---   79 (355)
                      .-..|..|||.+|.=    |+...  -|.|..|+. |+| |...|++ +|-     .+-.|.-.-|..|||.++.+|   
T Consensus        26 ~~~rF~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~-f~V-nk~~fa~-lLg-----iK~ntlN~Nfr~~gF~q~~~d~~~   97 (114)
T d1pp7u_          26 PNSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTE-FKM-KKKNVAL-VMG-----IKLNTLNVNLRDLAFEQLQHDKGG   97 (114)
T ss_dssp             GGGSHHHHHHHHHHHHTTCHHHHHHHTEEESSSSC-EEE-CHHHHHH-HHT-----CCHHHHHHHHHHTTCEEEEEEETT
T ss_pred             ccCCchHHHHHHHHHHHhChhhhhccceEEecCCE-EEE-ehHHHHH-HHC-----CChhhhcCcccccCceeeecCCCc
Confidence            356899999999983    32221  289999986 666 8889988 332     234666777888999988653   


Q ss_pred             CceEecccccccc
Q 018495           80 KWEFANEWFLRGQ   92 (355)
Q Consensus        80 ~~eF~He~F~RG~   92 (355)
                      .+.++++.|.|.-
T Consensus        98 ~~~w~~~~F~~nS  110 (114)
T d1pp7u_          98 WTQWKRSGFTRNS  110 (114)
T ss_dssp             EEEEECTTEETTE
T ss_pred             ceeeccCCccccc
Confidence            4677899998764

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.31  E-value=0.017  Score=46.47  Aligned_cols=69  Identities=19%  Similarity=0.252  Sum_probs=51.4

Q ss_pred             HHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccCcc----ccCCCCceEe
Q 018495           16 KTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYGFR----KVDPDKWEFA   84 (355)
Q Consensus        16 KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YGFr----Kv~pd~~eF~   84 (355)
                      =|.++|+|++..++|+|..++.-|.+.|+++.++.-=. +-=..-+|...-|-|..|-=+    ||...+..|.
T Consensus         6 FL~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyYY~~~il~Kv~g~rl~Y~   79 (110)
T d1awca_           6 FLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK   79 (110)
T ss_dssp             HHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEE
T ss_pred             HHHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHHHhcccEEecCCcEEEEe
Confidence            46788999999999999998889999999998874322 122457899999999887321    3334456665

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.023  Score=44.80  Aligned_cols=61  Identities=21%  Similarity=0.360  Sum_probs=46.8

Q ss_pred             ChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhccc
Q 018495           11 APFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTY   71 (355)
Q Consensus        11 p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~Y   71 (355)
                      ..-..=|.++|.|+++.++|+|...+.-|.+.|+++.++.-=. +-=...+|...-|-|..|
T Consensus         6 ~~Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyY   67 (98)
T d1flia_           6 IQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYY   67 (98)
T ss_dssp             CCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHH
T ss_pred             ccHHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Confidence            3445567889999999999999888888999999998875322 111346899999988776

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.019  Score=44.35  Aligned_cols=68  Identities=22%  Similarity=0.368  Sum_probs=48.9

Q ss_pred             HHHhhcCCCCCCcEEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccC----ccccCCCCceEe
Q 018495           17 TYQMVNDPTTDSLISWGK-ANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYG----FRKVDPDKWEFA   84 (355)
Q Consensus        17 Ly~mLed~~~~~iIsWs~-~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YG----FrKv~pd~~eF~   84 (355)
                      |.++|+|++..++|+|.. ++.-|.+.|+++.++.-=. +-=...||...-|-|..|-    .+||...+..|.
T Consensus         7 L~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyyY~~~il~Kv~g~rl~Y~   80 (86)
T d1duxc_           7 LLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYK   80 (86)
T ss_dssp             HHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHHHTTTSEEECTTSTTEEE
T ss_pred             HHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcccEeeccCcEEEEE
Confidence            566788999999999998 6789999999998885322 1223478999999997763    234444455554

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.029  Score=46.90  Aligned_cols=72  Identities=19%  Similarity=0.319  Sum_probs=53.3

Q ss_pred             HHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccC----ccccCCCCceEe
Q 018495           13 FVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYG----FRKVDPDKWEFA   84 (355)
Q Consensus        13 Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YG----FrKv~pd~~eF~   84 (355)
                      --.=|.++|.|++..++|+|...+..|.+.|+++.++..=. +-=...+|...-|-|..|-    .+||...+..|.
T Consensus        42 LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyYY~k~il~Kv~g~rl~Yk  118 (142)
T d1gvja_          42 LWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYR  118 (142)
T ss_dssp             HHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSEEE
T ss_pred             HHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHHhhcceEEecCCcEEEEe
Confidence            34557889999999999999998888999999999875322 1223578999999997763    234555566665

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.04  Score=46.61  Aligned_cols=77  Identities=18%  Similarity=0.362  Sum_probs=56.7

Q ss_pred             HHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccC----ccccCCCCceEecccccc
Q 018495           16 KTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYG----FRKVDPDKWEFANEWFLR   90 (355)
Q Consensus        16 KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YG----FrKv~pd~~eF~He~F~R   90 (355)
                      =|.++|+|++..++|+|...+.-|.++|+++.++..=. +.=...+|...-|-|..|=    .+||...+.+|.   |+.
T Consensus         9 FL~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyYY~k~il~Kv~g~r~~Yk---F~~   85 (155)
T d1hbxg_           9 FLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK---FVS   85 (155)
T ss_dssp             HTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE---ESS
T ss_pred             HHHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCEeeccCceeEEE---ecC
Confidence            35678999999999999998889999999999985322 2224578999999997763    335566677776   553


Q ss_pred             cccccc
Q 018495           91 GQKHLL   96 (355)
Q Consensus        91 G~~~LL   96 (355)
                      . |+.|
T Consensus        86 ~-p~~l   90 (155)
T d1hbxg_          86 Y-PEIL   90 (155)
T ss_dssp             T-TGGG
T ss_pred             C-HHHh
Confidence            3 4444

>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Transcription factor PU.1, residues 171-259
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.82  E-value=0.075  Score=40.98  Aligned_cols=56  Identities=14%  Similarity=0.234  Sum_probs=39.3

Q ss_pred             HHHHhhcCCCCCCcEEEcCCC-CeEEEeC--Cchhhhhhc-cc-ccCCCChhHHHhhhccc
Q 018495           16 KTYQMVNDPTTDSLISWGKAN-NSFIVVD--PLDFSQRIL-PA-YFKHNNFSSFVRQLNTY   71 (355)
Q Consensus        16 KLy~mLed~~~~~iIsWs~~G-~sFvV~d--~~~F~~~VL-P~-yFKh~nfsSFvRQLN~Y   71 (355)
                      =|.++|.|+++.++|+|...+ ..|-+.+  +++.++.-= -+ .=..-||...-|-|..|
T Consensus         7 FL~~LL~d~~~~~~I~Wt~~~~g~F~fv~~~~e~VA~lWG~~K~Nr~~MnYeklSRaLRyY   67 (88)
T d1puee_           7 FLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNY   67 (88)
T ss_dssp             HHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCccCCCceEeeCCCCceEEEEeCCHHHHHHHHHhhcCCCCCCcHHHHHHHHHHH
Confidence            367889999999999997655 4466654  666776422 11 12456999999999776

>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: E74-like factor 5 ese-2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.04  E-value=0.15  Score=39.66  Aligned_cols=56  Identities=14%  Similarity=0.248  Sum_probs=40.9

Q ss_pred             HHHHhhcCCCC-CCcEEEcC-CCCeEEEeCCchhhhhhc-ccccCCCChhHHHhhhccc
Q 018495           16 KTYQMVNDPTT-DSLISWGK-ANNSFIVVDPLDFSQRIL-PAYFKHNNFSSFVRQLNTY   71 (355)
Q Consensus        16 KLy~mLed~~~-~~iIsWs~-~G~sFvV~d~~~F~~~VL-P~yFKh~nfsSFvRQLN~Y   71 (355)
                      =|.++|.|++. .++|+|.. +..-|.++|+++.++.-= -+-=..-+|...-|-|..|
T Consensus         7 FL~~LL~d~~~~~~~I~Wt~k~~g~Fkl~d~~~VA~lWG~~K~~~~M~YeklSRaLRyY   65 (94)
T d1wwxa1           7 FVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYY   65 (94)
T ss_dssp             HHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCccCCCeEEEEcCCCcEEEEcCHHHHHHHHHhhcCCCCCcHHHHHHHHHHH
Confidence            36788888754 67999998 445799999999887421 1111347899999999776

>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Sam pointed domain containing ets transcription SPDEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.92  E-value=0.13  Score=39.54  Aligned_cols=59  Identities=14%  Similarity=0.194  Sum_probs=43.4

Q ss_pred             HHHHhhcCCC-CCCcEEEcCCCC-eEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccCcc
Q 018495           16 KTYQMVNDPT-TDSLISWGKANN-SFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYGFR   74 (355)
Q Consensus        16 KLy~mLed~~-~~~iIsWs~~G~-sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YGFr   74 (355)
                      =|.++|.|++ ..++|+|...+. -|.+.|+++.++.-=. +-=...+|..+-|-|..|-=+
T Consensus         8 FL~~LL~d~~~~~~~I~Wt~~~~g~Fkl~~~~~VA~lWG~~Knk~~M~YeklSRALRyYY~~   69 (88)
T d1yo5c1           8 FLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK   69 (88)
T ss_dssp             HHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred             HHHHHHcCccccCCCeEEECCCCceEEecCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Confidence            3667888874 578999976554 7999999998885322 122467899999999887533