Citrus Sinensis ID: 018497

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MKCSSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVESIIEPVSQSLILSRS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHccccHHHHHHHHcccccHHHHcccHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccEEEEEEEEccEEEEEcccccEEEEEEEccccEEEEcccccccccEEEEEEEcccccEEEEEEEEEcccccEEEEEEccccEEEEccccccccEEEccEEEEEEEEccccccccccEEEEEEccccEEEEEcccccccccccccEEEEEccEEEEEEEEccccccEEEEEEEEEccccccEEEEEEEcccccccEEEEEEEccEEEEEEEEccccEEEEEEEccccEEEEEEEEcccccEEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccEEEEEEEccccEEEEcccccccccccccccccccccEEEEEEcccEEEEEEEcccccccEEEEccccccEEEcccccccEEEEEEEEccccccEEEEEEEEEcccccEEEEEcccccccEcccccccccEEEEEEEEEEEEEcccccccccEEEEEEEccccccccccccccccccccEEEEEEEccEEEEEEEcccccccEEEEEEEEccccccEEEEEEEEEcccccEEEEEEEEccEEEEEcccccccEEEEEEcccccEEEEEEEEccccccccccEEEcccHcHHHHHHHccc
Coil and Loop (DISEMBL)
mkcssfrlpedvMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNqsmrnprpllfrhgispsylgfystkckefedlcdppfrtqladldvvgscngvlcfcsngsdrsliYLWNPLikkymtlprpslnprylgfgvnsvsghlddfKVVYSLRSnswkniaygfprsieinrshinssVFLNGSVHWCArfscyhdnscpwlIVSFDFAKEIFQTvmmpydlstddadKYLNVFDGYLCVFatipnntfrSYELWVMKEYglteswtklytiekpqriwwplgfterGKIFIrgecrhggygllvynphsdtfkcigvhlPYYAIQVLNFVESIIEPvsqslilsrs
Flexible Loop (DISEMBL)
mkcssfrlpedvmIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVESIIEPvsqslilsrs
Low Complexity Region (SEG)
MKCSSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVESIIEPVSQSLILSRS
Disordered region (IsUnstruct)
*******LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVESIIEPVS********
Disordered Region (DISOPRED)
***SSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVESIIEPVSQSLILS**
Disordered Region (DISEMBL)
MKCSSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVESIIEPVSQSLILSRS
Disordered Region (DISPRO)
*****FRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVESIIEPVSQSLIL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKCSSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVESIIEPVSQSLILSRS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
Q9SFC7	417	F-box protein At3g07870 O	yes	no	0.859	0.731	0.276	3e-21
Q9SU30	413	F-box protein CPR30 OS=Ar	no	no	0.726	0.624	0.281	3e-19
Q8GXC7	427	F-box/kelch-repeat protei	no	no	0.729	0.606	0.258	4e-17
Q9SUY0	402	F-box protein At4g22390 O	no	no	0.735	0.649	0.261	4e-15
Q9SS35	389	Putative F-box protein At	no	no	0.833	0.760	0.251	7e-15
Q9SAB5	363	Putative F-box/LRR-repeat	no	no	0.785	0.768	0.265	7e-13
Q9FHP3	392	F-box protein At5g65850 O	no	no	0.763	0.691	0.255	8e-13
Q9C800	441	Putative F-box protein At	no	no	0.690	0.555	0.263	2e-12
Q9LFW0	438	Putative F-box protein At	no	no	0.853	0.691	0.257	4e-12
Q9LU24	360	Putative F-box protein At	no	no	0.695	0.686	0.250	5e-12

>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1

 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 157/380 (41%), Gaps = 75/380 (19%)

Query: 8   LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNP-RPLLFRHGIS 66
           LPED++ DIF RL + ++ARL  VC+SW ++LT        L+ S  +P +P L  H  S
Sbjct: 28  LPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHG----RLSSSSSSPTKPCLLLHCDS 83

Query: 67  PSYLGFYSTKCKEFEDLCDPP-----FRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWN 121
           P   G +     E E           F + + + DVVGSCNG+LC   +  + SL YL+N
Sbjct: 84  PIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSL-YLYN 142

Query: 122 PLIKKYMTLPRPS----LNPRYLGFGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIE 177
           P     + LP  S          GFG + ++      K+VY   S+S  N  Y     I+
Sbjct: 143 PFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQ 202

Query: 178 INRSHI-----------------------------NSSVFLNGSVHWCARFSCYHDNSCP 208
             +S +                             +S   +NG +H+  R   +  +   
Sbjct: 203 YKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPDR-- 260

Query: 209 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEY 268
              VSFD   E F+ +  P     +  +  L    G LC  A +  N +   ++WVMK Y
Sbjct: 261 -KFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLC--AVVYGN-YGKLDIWVMKTY 316

Query: 269 GLTESWTKLYTI------------EKPQRIWWP---------LGFTERGKIFIRGECRHG 307
           G+ ESW K Y+I            ++P  IW           L   E G+I +  + R  
Sbjct: 317 GVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILLEYKSR-- 374

Query: 308 GYGLLVYNPHSDTFKCIGVH 327
              L+ Y+P    FK +  H
Sbjct: 375 --VLVAYDPKLGKFKDLLFH 392

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 148/327 (45%), Gaps = 69/327 (21%)

Query: 8   LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISP 67
           +P D++ DIFLRL  K L R R + K    L+    F+E HL++ ++    L+    +  
Sbjct: 4   IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMI---LLR 60

Query: 68  SYLGFYSTKCKEFEDLCDPPFRTQLAD-LDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKK 126
             L  YS      + + D     +     +V GS NG++   ++ +D   + ++NP  ++
Sbjct: 61  GALRLYSVDLDSLDSVSDVEHPMKRGGPTEVFGSSNGLIGLSNSPTD---LAVFNPSTRQ 117

Query: 127 YMTLPRPSLN-PR--------YLGFGVNSVSGHLDDFKVV-------------------- 157
              LP  S++ P         + G G +SVS   DD+KVV                    
Sbjct: 118 IHRLPPSSIDLPDGSSTRGYVFYGLGYDSVS---DDYKVVRMVQFKIDSEDELGCSFPYE 174

Query: 158 ---YSLRSNSWKNIAYGFPRSIEI----------NRSHINSSVFLNGSVHWC--ARFSCY 202
              +SL+ NSWK I      SI++           R +    V    S+HW    R    
Sbjct: 175 VKVFSLKKNSWKRIE-SVASSIQLLFYFYYHLLYRRGY---GVLAGNSLHWVLPRRPGLI 230

Query: 203 HDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLN--VFDGYLCVFATIPNNTFRSY 260
             N    LIV FD A E F+ V  P  ++  + D  ++  V DG LC+      N  +SY
Sbjct: 231 AFN----LIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMC----NYDQSY 282

Query: 261 -ELWVMKEYGLTESWTKLYTIEKPQRI 286
            ++W+MKEY + +SWTK++T++KP+ +
Sbjct: 283 VDVWMMKEYNVRDSWTKVFTVQKPKSV 309

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 141/337 (41%), Gaps = 78/337 (23%)

Query: 5   SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHG 64
           S  LP +++ +I LRL  K++ R RCV K + TL +   F +IHL+  +RN         
Sbjct: 33  SLVLPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRK 92

Query: 65  ISPSYLGFYSTKCKEFED-------------LCDPP------FRTQLAD----------- 94
           +  S    YS       D             L D P       R  + D           
Sbjct: 93  LIVSSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLK 152

Query: 95  ----------LDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLP---RPSL------ 135
                     +++VGS NG++C          ++L+NP       LP   RP        
Sbjct: 153 LNAKSYRRNWVEIVGSSNGLVCISPG---EGAVFLYNPTTGDSKRLPENFRPKSVEYERD 209

Query: 136 NPRYLGFGVNSVSGHLDDFKVV--------------YSLRSNSWKNIAYGFPRSIEINRS 181
           N +  GFG +   G  DD+K+V              YSL+++SW+ I      + E N  
Sbjct: 210 NFQTYGFGFD---GLTDDYKLVKLVATSEDILDASVYSLKADSWRRIC---NLNYEHNDG 263

Query: 182 HINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNV 241
              S V  NG++HW    S ++      ++V+FD   E F+ + +P D + D + ++ N 
Sbjct: 264 SYTSGVHFNGAIHWVFTESRHNQR----VVVAFDIQTEEFREMPVP-DEAEDCSHRFSNF 318

Query: 242 FDGYLCVFATIPNNTFRSYE-LWVMKEYGLTESWTKL 277
             G L     + N+ +  ++ +WVM EYG  +SW+++
Sbjct: 319 VVGSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRI 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 137/318 (43%), Gaps = 57/318 (17%)

Query: 9   PEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISPS 68
           P D++ ++FLRL    L + R + K   +L+ S  FV  HL + +     L+      P 
Sbjct: 5   PTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLR-GPR 63

Query: 69  YLGFYSTKCKEFEDLCDPPFRTQLADL-DVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKY 127
            L   + +    E++ D P   Q     +V GS NGV+  C++  D   + ++NP  +K 
Sbjct: 64  LL--RTVELDSPENVSDIPHPLQAGGFTEVFGSFNGVIGLCNSPVD---LAIFNPSTRKI 118

Query: 128 MTLPRPSLN-PR--------YLGFGVNSVSGHLDDFKVV--------------------- 157
             LP   ++ P         + G G +SV    DDFKVV                     
Sbjct: 119 HRLPIEPIDFPERDITREYVFYGLGYDSVG---DDFKVVRIVQCKLKEGKKKFPCPVEVK 175

Query: 158 -YSLRSNSWKNIAYGFPRSIEINRSHIN------SSVFLNGSVHWC--ARFSCYHDNSCP 208
            +SL+ NSWK +   F   I     + +        V +N  +HW    R      N+  
Sbjct: 176 VFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNA-- 233

Query: 209 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEY 268
             I+ +D A +    +  P +L  +D +  + V DG +C+      + +   ++WV+KEY
Sbjct: 234 --IIKYDLASDDIGVLSFPQELYIED-NMDIGVLDGCVCLMCY---DEYSHVDVWVLKEY 287

Query: 269 GLTESWTKLYTIEKPQRI 286
              +SWTKLY + KP+ +
Sbjct: 288 EDYKSWTKLYRVPKPESV 305

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS35|FB137_ARATH Putative F-box protein At3g10240 OS=Arabidopsis thaliana GN=At3g10240 PE=4 SV=1

 Score = 81.6 bits (200), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 149/342 (43%), Gaps = 46/342 (13%)

Query: 8   LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLL------- 60
           +P D++ +I LRL  K++AR RCV K W+++ T   F+ +    + R+PR LL       
Sbjct: 27  IPLDLVSEILLRLPEKSVARFRCVSKPWSSITTEPYFINL---LTTRSPRLLLCFKANEK 83

Query: 61  FRHGISPSYLGFYST--KCKEFEDLCDP---PFRTQLADLDVVGSCNGVLCFCSNGSDRS 115
           F     P +   + T  K   +  L D     F  ++       S NG++CF     + +
Sbjct: 84  FFVSSIPQHRQTFETWNKSHSYSQLIDRYHMEFSEEMNYFPPTESVNGLICF----QESA 139

Query: 116 LIYLWNPLIKKYMTLPRPSLNPRYLG--FGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFP 173
            + +WNP  ++ + LP+P+ N   L    G + V G      + +S   ++ + +  G  
Sbjct: 140 RLIVWNPSTRQLLILPKPNGNSNDLTIFLGYDPVEGKHKVMCMEFSATYDTCRVLTLGSA 199

Query: 174 ----RSIEINRSH----INSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM 225
               R+++ +  H     +S   +NG V+  A    Y  + C W+++SFD   EIF  + 
Sbjct: 200 QKLWRTVKTHNKHRSDYYDSGRCINGVVYHIA----YVKDMCVWVLMSFDVRSEIFDMIE 255

Query: 226 MPYDLSTDDADKYLNVFDGYLCVFA--TIPNNTFRSYELWVMKEYGLTES---WTKLYTI 280
           +P   S+D     L  ++G L       I  N  R   LW+++++    S      L  I
Sbjct: 256 LP---SSDVHKDVLIDYNGRLACVGREIIEKNGIR---LWILEKHNKWSSKDFLAPLVHI 309

Query: 281 EK--PQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 320
           +K      +   GFT  G+I       H    +  Y+P  +T
Sbjct: 310 DKSLSTNKFLLKGFTHAGEIIYVESMFHKSAKIFFYDPVRNT 351

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAB5|FBLK2_ARATH Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana GN=At1g11620 PE=4 SV=1

 Score = 75.1 bits (183), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 155/347 (44%), Gaps = 68/347 (19%)

Query: 4   SSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQ-SMRNPRPLLF- 61
           ++  L  D++ +I  R+  ++L RLR  CK W  L+    FV  HL+    R  +  +F 
Sbjct: 2   ATMDLSSDLVEEILSRVPARSLVRLRSTCKQWEALIAEPRFVNKHLSHMRYREQQFTVFN 61

Query: 62  -RHGISPSYLGFYSTKCKEFEDLCDP-------PFRTQLADLDVVGSCNGVLCFCSNGSD 113
             H +SP    F ST      D   P       PF   L+    +  C+G+L + +    
Sbjct: 62  NEHIVSPL---FGSTTSYVGIDFNKPENCGVKLPFPIALSPAINISHCDGLLLYVT---- 114

Query: 114 RSLIYLWNPLI--KKYMTLPRP---SLNPRYLGFGVNSVSGHLDDFKV------------ 156
           +S++ + NPL+  K+++        S++   LG+  N  SG   D+KV            
Sbjct: 115 KSMLLVANPLLSQKRWIKCSEGFDHSMDAYGLGYLFNQSSGFY-DYKVVRFRCGIKNSSR 173

Query: 157 --VYSLRSNSWKNIAYGFPRSIEINRSHIN----SSVFLNGSVHWCARFSCYHDNSCPWL 210
             VY+ +S+SWK +       ++ N    +    SSV L G+ +W      Y+ +    +
Sbjct: 174 VEVYAFKSDSWKVV-------VDTNFGGFDGLPLSSVCLRGTPYWLG----YNKSGNELM 222

Query: 211 -IVSFDFAKEIFQTVMM-PYDLSTDDADKY--LNVFDGYLCVFATIPNNTFRSYELWVMK 266
            I SFDF+KE F+ + + P  + + +  KY  L +F G         + T + + LWVMK
Sbjct: 223 SIQSFDFSKERFEPLFLPPQSIGSRNLVKYISLGIFRGDQLSLLLECHETCKLH-LWVMK 281

Query: 267 EYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLV 313
           +    + W++L T++ PQ   +       GK F     R+G   LL+
Sbjct: 282 K----QHWSRLMTVDVPQDAIY-------GKYFSSFIERNGRLALLI 317

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHP3|FB300_ARATH F-box protein At5g65850 OS=Arabidopsis thaliana GN=At5g65850 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 138/298 (46%), Gaps = 27/298 (9%)

Query: 5   SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHG 64
           S ++P D++I+I LRL  K++A  RCV K W +++  + F E+ L +S+  P+ LLF   
Sbjct: 32  SVQIPVDIIIEILLRLPAKSIATCRCVSKLWISVICRQDFTELFLTRSLHRPQ-LLFCCK 90

Query: 65  ISPSYLGFYSTKCKE-FEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPL 123
              +   F S + +  +E+      +       +    NG++CF     + ++  + NP 
Sbjct: 91  KDGNLFFFSSPQLQNPYENSSAISLKNFSLCYKISRPVNGLICFKRKEMNETVTVICNPS 150

Query: 124 IKKYMTLPRP---SLNPRYLGFGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFP----RSI 176
               ++LP+P   S+ P    F    +      FKV+ S +S+  + +  G      R I
Sbjct: 151 TGHTLSLPKPMKTSIGPSRF-FVYEPIQ---KQFKVLLSYKSDEHQVLTLGTGELSWRII 206

Query: 177 EINRSHI--NSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDD 234
           E +  HI   S + +NG +++ A     + +S  ++IV FD   E F+ + +  +     
Sbjct: 207 ECSMPHILGMSEICINGVLYYPA----INLSSGDYIIVCFDVRSEKFRFITVMEEFIKAA 262

Query: 235 ADKYLNVFDGYLCVFAT----IPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWW 288
            D  L  ++G L    +      +   +S ELWV+++    E W+K +T   P   WW
Sbjct: 263 HDGTLINYNGKLASLVSERYCFVDGRSKSIELWVLQDAEKKE-WSK-HTYVLPA--WW 316

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C800|FB34_ARATH Putative F-box protein At1g33530 OS=Arabidopsis thaliana GN=At1g33530 PE=4 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 124/300 (41%), Gaps = 55/300 (18%)

Query: 5   SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHL-----NQSMRNPRPL 59
           +  LP+ ++ +I  RL VK L RL+ + K W +L+ S    E HL        ++  +  
Sbjct: 94  AVELPDVLVEEILQRLPVKYLVRLKSISKGWKSLIESDHLAEKHLRLLEKKYGLKEIKIT 153

Query: 60  LFRHGISPSYLGFYSTKC------KEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSD 113
           + R       + F+S +        + +DL           L V GSCNG++C      D
Sbjct: 154 VERSTSKSICIKFFSRRSGMNAINSDSDDL-----------LRVPGSCNGLVCVYE--LD 200

Query: 114 RSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDF---------KVVYSLRSNS 164
              IYL NP+     TL  P      +GFG++ V+G               VV+ L +N 
Sbjct: 201 SVYIYLLNPMTGVTRTLTPPRGTKLSVGFGIDVVTGTYKVMVLYGFDRVGTVVFDLDTNK 260

Query: 165 WKN-IAYGFPRSIEINRSHINSSVFLNGSVHW--CARFSCYHDNSCPWLIVSFDFAKEIF 221
           W+       P  +    +   + VF+NGS+ W   + FS          I+  D   E F
Sbjct: 261 WRQRYKTAGPMPLSCIPTPERNPVFVNGSLFWLLASDFS---------EILVMDLHTEKF 311

Query: 222 QTVMMPYDLSTDDADK-----YLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTK 276
           +T+  P D+  DD D      Y+   +  LCV          SY +WV+ +  L+E W +
Sbjct: 312 RTLSQPNDM--DDVDVSSGYIYMWSLEDRLCVSNV--RQGLHSY-VWVLVQDELSEKWER 366

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFW0|FB257_ARATH Putative F-box protein At5g15660 OS=Arabidopsis thaliana GN=At5g15660 PE=4 SV=1

 Score = 72.8 bits (177), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 149/357 (41%), Gaps = 54/357 (15%)

Query: 8   LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLL-----FR 62
           +P D++I+I  RL +K++AR   V K W T + S  F + +   S   PR L+     F+
Sbjct: 28  IPHDLVIEILERLPLKSVARFLTVSKLWATTIRSPDFRKSYRGGSSSEPRTLIVSDLNFK 87

Query: 63  HGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNP 122
                 +    S     F      PF     +       NG++     G+D+ +I   NP
Sbjct: 88  EPNPKLHFFRPSISSPSFLSSLTCPFTYPRHEEYYYHHVNGLIS-VGYGTDQIVI---NP 143

Query: 123 LIKKYMTLPRPSLNPRYL--GFGVNSVSGHLDDFKV-------------------VYSL- 160
              K++TLPRP    + +   FG +SVS   D +KV                   VY+L 
Sbjct: 144 TTGKFITLPRPKTRRKLVISFFGYDSVS---DQYKVLCMTERLRGHPEEASSQHQVYTLG 200

Query: 161 -RSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE 219
            +  SWK I    P     +R    ++V +NG V++ A+        C   ++ FD   +
Sbjct: 201 AKQKSWKMINCSIP-----HRPWSWNAVCINGVVYYIAKTGEGMFRRC---LMRFDLKSD 252

Query: 220 IFQT-VMMPYDLSTDDADKYLNVFDGYLCVFATIPNN-TFRSYELWVMKEYGLTESWTKL 277
                 ++P ++ T   D +L  + G +     IPN   F +Y++WVM + G    W K 
Sbjct: 253 NLDLCTILPEEIQTSLHDYFLINYKGKVA----IPNQPNFYTYDVWVMNQEGGKIEWLKN 308

Query: 278 YTIE-KPQ----RIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLP 329
            T   KP+    R  +  G T  G+  +        + +  YNP  ++F+ I V  P
Sbjct: 309 ITFTIKPRKGFVRYLFVTGTTHTGEFILAPTSYTDEFYVFHYNPDMNSFRKIRVQAP 365

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 127/291 (43%), Gaps = 44/291 (15%)

Query: 8   LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISP 67
           LPE++ I+I +RL +K+LAR RCVCK+W  L+    F E +     R+  P  F      
Sbjct: 5   LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETY-----RDMSPAKFVSFYDK 59

Query: 68  S-YLGFYSTKCKEFEDLCDPPFRTQLADLDV-VGSCNGVLCFCSNGSDRSLIYLWNPLIK 125
           + Y+     K     +  D P    + D    V  C+G LC          + +WNP  K
Sbjct: 60  NFYMLDVEGKHPVITNKLDFPLDQSMIDESTCVLHCDGTLCVTLKN---HTLMVWNPFSK 116

Query: 126 KYMTLPRPSL--NPRYLGFGVNSVSGHLDDFKV-------------VYSLRSNSW-KNIA 169
           ++  +P P +  +   LGFG + V    DD+KV             V+  R+ SW +++ 
Sbjct: 117 QFKIVPNPGIYQDSNILGFGYDPVH---DDYKVVTFIDRLDVSTAHVFEFRTGSWGESLR 173

Query: 170 YGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYD 229
             +P     +R       FL+  ++W A     + +S    I+ F+ +   ++ + +P  
Sbjct: 174 ISYPDWHYRDR----RGTFLDQYLYWIA-----YRSSADRFILCFNLSTHEYRKLPLPV- 223

Query: 230 LSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI 280
            +      +L V    LC+  T      +   + VM++ G   SW+K+ ++
Sbjct: 224 YNQGVTSSWLGVTSQKLCI--TEYEMCKKEIRISVMEKTG---SWSKIISL 269

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
296090345	423	unnamed protein product [Vitis vinifera]	0.892	0.749	0.332	4e-37
356555602	405	PREDICTED: F-box/kelch-repeat protein At	0.904	0.792	0.291	7e-30
359806236	406	uncharacterized protein LOC100815072 [Gl	0.904	0.790	0.291	1e-28
147785389	485	hypothetical protein VITISV_041940 [Viti	0.904	0.661	0.272	2e-27
357447615	366	F-box/kelch-repeat protein [Medicago tru	0.907	0.879	0.275	5e-27
297739282	423	unnamed protein product [Vitis vinifera]	0.904	0.758	0.269	1e-26
357456321	413	F-box/kelch-repeat protein [Medicago tru	0.743	0.639	0.328	1e-26
449444949	379	PREDICTED: F-box protein CPR30-like [Cuc	0.895	0.839	0.302	3e-26
357472483	378	F-box/kelch-repeat protein [Medicago tru	0.878	0.825	0.309	5e-26
255580390	1029	Transitional endoplasmic reticulum ATPas	0.884	0.305	0.278	9e-26

>gi|296090345|emb|CBI40164.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 121/364 (33%), Positives = 192/364 (52%), Gaps = 47/364 (12%)

Query: 13  MIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRP-LLFRHGISPSYLG 71
           +IDI LRL VK++ R RCVCKSW TL     F+ +HL Q+  N    LLF+H +S S   
Sbjct: 25  LIDIHLRLPVKSIVRFRCVCKSWCTLFDDPDFISMHLRQASANSNGRLLFKH-LSSSEQE 83

Query: 72  FYSTKCK-EFEDL--CDPPFRTQLADLDVVGSCNGVLCFCSN---GSDRSL-IYLWNPLI 124
            YS +    F ++   + P  ++     +VGS NG++C   +   GS  SL ++LWNP I
Sbjct: 84  IYSLRSNIAFAEVRRLEVPVPSKTDYYQIVGSSNGLICLTESNFKGSYLSLNLFLWNPAI 143

Query: 125 KKYMTLPRPSLNPRY-------LGFGVNSVSGHLDDFKV---------------VYSLRS 162
           +++ TLP+  +N          LGF  + V   ++D+KV               VYSLR+
Sbjct: 144 REFQTLPKYHINNFTSPLMVVGLGFAFHPV---INDYKVVRIVYFMRNKTSEADVYSLRT 200

Query: 163 NSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ 222
            SW+ +       I  N S      F+NG++HW A      DN+   LI+SFD AK++F+
Sbjct: 201 GSWRKVDANICCYIHSNVSR----TFINGALHWLAGKKNEMDNTDN-LILSFDMAKDVFK 255

Query: 223 TVMMPYDLSTDD-ADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE 281
            +M+P D   D+   K L  + G L V      ++  + ++WVM+EYG+ +SWTK +TI 
Sbjct: 256 EIMLP-DFGYDELIRKCLADYKGSLSVLFYDAYHSNENCDVWVMEEYGVAKSWTKHFTIR 314

Query: 282 KPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVES 341
               I  P  F + G+  ++ + + GG+  + +NP    F+ +GV  P    +++ ++ES
Sbjct: 315 HEIEIIIPFEFFDNGEAILQKK-KSGGF--ISWNPDGIRFRDLGVSGP---ARLVEYMES 368

Query: 342 IIEP 345
           ++ P
Sbjct: 369 LVSP 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555602|ref|XP_003546119.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max]

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 175/377 (46%), Gaps = 56/377 (14%)

Query: 8   LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISP 67
           LP++++++I  RL VK+L + RCVCKSW +L+    F++ HL+ S R+      R  +S 
Sbjct: 49  LPDELVVEILSRLPVKSLLQFRCVCKSWMSLIYDPYFMKKHLHLSSRSTHFTHHRIILSA 108

Query: 68  SYLGFYSTKC------KEFEDLCDP---PFRTQLADLDVVGSCNGVLCFCSNGSDRSLIY 118
           +   F+   C           +CD    P + +     +VGSCNG+LCF   G     + 
Sbjct: 109 TTAEFHLKSCSLSSLFNNLSTVCDELNYPVKNKFRHDGIVGSCNGLLCFAIKG---DCVL 165

Query: 119 LWNPLIKKYMTLPRPSLNPR-----YLGFGVNSVSGHLDDFKV----------------- 156
           LWNP I+     P    N R       G G + V+   +D+KV                 
Sbjct: 166 LWNPSIRVSKKSPPLGNNWRPGCFTAFGLGYDHVN---EDYKVVAVFCDPSEYFIECKVK 222

Query: 157 VYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDF 216
           VYS+ +NSW+ I   FP      +   NS  F++G+++W A  S    +S  W+IVS D 
Sbjct: 223 VYSMATNSWRKIQ-DFPHGFSPFQ---NSGKFVSGTLNWAANHSI--GSSSLWVIVSLDL 276

Query: 217 AKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTK 276
            KE ++ V+ P     D +   L V  G LC+        F    +W+MK+YG  ESW K
Sbjct: 277 HKETYREVLPPDYEKEDCSTPGLGVLQGCLCMNYDYKKTHFV---VWMMKDYGARESWVK 333

Query: 277 LYTI---EKPQRIWW--PLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYY 331
           L +I     P+   +  P   +E G++ +  E     + L++YNP  ++FK   +     
Sbjct: 334 LVSIPYVPNPENFSYSGPYYISENGEVLLMFE-----FDLILYNPRDNSFKYPKIESGKG 388

Query: 332 AIQVLNFVESIIEPVSQ 348
                 +VE+++ P+  
Sbjct: 389 WFDAEVYVETLVSPMKH 405

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806236|ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycine max] gi|255637050|gb|ACU18857.1| unknown [Glycine max]

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 175/378 (46%), Gaps = 57/378 (15%)

Query: 8   LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISP 67
           LP++++++I  RL VK+L + RCVCKSW +L++   F++ HL+ S R       R  +S 
Sbjct: 49  LPDELVVEILSRLPVKSLLQFRCVCKSWMSLISDPYFMKKHLHLSSRCTHFTHHRIILSA 108

Query: 68  SYLGFYSTKC-------KEFEDLCDP---PFRTQLADLDVVGSCNGVLCFCSNGSDRSLI 117
           +   F+   C            +CD    P + +     +VGSCNG+LCF   G     +
Sbjct: 109 TTAEFHLKSCSLSSLFNNPSSTVCDDLNYPVKNKFRHDGIVGSCNGLLCFAIKG---DCV 165

Query: 118 YLWNPLIKKYMTLPRPSLNPR-----YLGFGVNSVSGHLDDFKV---------------- 156
            LWNP I+     P    N R       G G + V+   +D+KV                
Sbjct: 166 LLWNPSIRVSKKSPPLGNNWRPGCFTAFGLGYDHVN---EDYKVVAVFCDPSEYFIECKV 222

Query: 157 -VYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFD 215
            VYS+ +NSW+ I   FP          NS  F++G+++W A  S     S  W+IVS D
Sbjct: 223 KVYSMATNSWRKIQ-DFPHGF---LPFQNSGKFVSGTLNWAANHSI--GPSSFWVIVSLD 276

Query: 216 FAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWT 275
             KE ++ V+ P     D +   L V  G LC+        F    +W+MK+YG+ ESW 
Sbjct: 277 LHKETYREVLPPDYEKEDCSTPSLGVLQGCLCMNYDYKKTHFV---VWMMKDYGVRESWV 333

Query: 276 KLYTI---EKPQRIWW--PLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPY 330
           KL +I     P+   +  P   +E GK+ +  E     + L++Y+P +++FK   +    
Sbjct: 334 KLVSIPYVPNPEDFSYSGPYYISENGKVLLMFE-----FDLILYDPRNNSFKYPKIESGK 388

Query: 331 YAIQVLNFVESIIEPVSQ 348
                  +VE+++ P+  
Sbjct: 389 GWFDAEVYVETLVSPMKH 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785389|emb|CAN68677.1| hypothetical protein VITISV_041940 [Vitis vinifera]

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 182/378 (48%), Gaps = 57/378 (15%)

Query: 5   SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHG 64
           +F L E+ ++D+ LRL VK++ R +CVC+SW TL     F+ +HL +++ +    +    
Sbjct: 81  NFILSEN-LVDVLLRLPVKSIIRFKCVCQSWQTLFNDPDFINMHLRRAITHNNCCMLLKY 139

Query: 65  ISPSYLGFYSTKC-KEFEDL--CDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLI---- 117
           +S S    YS +C K+F +      P  ++     +VGS NG++C   + +  S +    
Sbjct: 140 LSSSEEEVYSLRCDKDFAEFRRLQVPVPSKTDYYHIVGSSNGLICLTESNNKGSYVTVDT 199

Query: 118 YLWNP-LIKKYMTLPRPSLNPRY--------LGFGVNSVSGHLDDFKV------------ 156
           +LWNP +  ++  LP+  +N           LGF  +     +DD+KV            
Sbjct: 200 FLWNPSVTAQWKPLPKYLINNMMTSPFMVVGLGFAFHP---QIDDYKVVRIVYFLKSKTY 256

Query: 157 ---VYSLRSNSWKNIAYGFPRSIEINRSHINSSV---FLNGSVHWCARFSCYHDNSCPWL 210
              VYSL+ ++WKNI             HI+ +V   F+NG++HW A            L
Sbjct: 257 EVHVYSLKQDAWKNIDAKV-------HCHIHDTVSRTFVNGALHWLAAKKNQGRGKSDDL 309

Query: 211 IVSFDFAKEIFQTVMMP---YDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKE 267
           I+SFD  ++  + +++P   YD S+    K L  + G L V     +    + ++WVM E
Sbjct: 310 ILSFDMVEDNLREMILPEFGYDESS--TQKCLADYKGLLSVLVYNAHRCNDNCDIWVMDE 367

Query: 268 YGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVH 327
           YG+  SWTK +T      I   L F + G++ ++   ++G  GL+  +P+    + + V 
Sbjct: 368 YGVASSWTKRFTFCLDVEILILLDFLDNGEVVVQN--KNG--GLVACDPNGGKIRDLKVA 423

Query: 328 LPYYAIQVLNFVESIIEP 345
            P   ++   ++E+++ P
Sbjct: 424 GPACLVK---YIETLVSP 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447615|ref|XP_003594083.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355483131|gb|AES64334.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 179/378 (47%), Gaps = 56/378 (14%)

Query: 8   LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPR-PLLFRHGIS 66
           LPE+++++I ++L +K+L R RCVCKSW  ++++  F++  L+ S +N       R  +S
Sbjct: 8   LPEELILEILIKLPIKSLLRFRCVCKSWLHIISNPYFIKKQLHFSTQNTHFTTNHRIILS 67

Query: 67  PSYLGFYSTKC---------KEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLI 117
            +   F+   C             D  + P + +     +VGSCNG+LCF   G     +
Sbjct: 68  ATTAEFHLKSCSITSLFNNPSTVSDDLNYPVKNKFRHDGIVGSCNGLLCFAIKG---DCV 124

Query: 118 YLWNPLIKKYMTLPRPSLNPR-----YLGFGVNSVSGHLDDFKV---------------- 156
            LWNP I+     P    N R       G G + V+   DD+KV                
Sbjct: 125 LLWNPSIRVSKKSPPLGNNWRPGCFTCFGLGYDHVN---DDYKVVAVFCDPNEFFSESKV 181

Query: 157 -VYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFD 215
            VYS+ +N+W+ I + FP  +   ++  +S  F++G+++W + +S    +S  W IVS D
Sbjct: 182 KVYSMATNTWRKI-HDFPHGVSPYQN--SSGKFVSGTLNWASNYSI--GSSSFWTIVSLD 236

Query: 216 FAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWT 275
             KE ++ V+ P     + +   L+V  G LC+        F    +W+MK+YG+ ESW 
Sbjct: 237 LEKETYREVLPPDYEKEECSTPSLSVLKGCLCMNYDYKKTDFV---VWLMKDYGVRESWI 293

Query: 276 KLYTI---EKPQRIWW--PLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPY 330
           KL TI     P+   +  P   +E G++ +  E     + L++Y+P   +F+   +    
Sbjct: 294 KLLTIPYLPNPEDFSYSGPYCISENGEVLLMFE-----FDLILYDPRDHSFRYPRIEGGK 348

Query: 331 YAIQVLNFVESIIEPVSQ 348
                  +VES++ P+  
Sbjct: 349 GWFDAEVYVESLVSPMKD 366

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739282|emb|CBI28933.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 182/378 (48%), Gaps = 57/378 (15%)

Query: 5   SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHG 64
           +F L E+ ++D+ LRL VK++ R +CVC+SW TL     F+ ++L +++ +    +    
Sbjct: 19  NFILSEN-LVDVLLRLPVKSIIRFKCVCQSWQTLFNDPDFINMNLRRAITHNNCCMLLKY 77

Query: 65  ISPSYLGFYSTKC-KEFEDL--CDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLI---- 117
           +S S    YS +C K+F +      P  ++     +VGS NG++C   + +  S +    
Sbjct: 78  LSSSEEEVYSLRCDKDFAEFRRLQVPVPSKTDYYHIVGSSNGLICLTESNNKGSYVTVDT 137

Query: 118 YLWNP-LIKKYMTLPRPSLNPRY--------LGFGVNSVSGHLDDFKV------------ 156
           +LWNP +  ++  LP+  +N           LGF  +     +DD+KV            
Sbjct: 138 FLWNPSVTAQWKPLPKYLINNMMTSPFMVVGLGFAFHP---QIDDYKVVRIVYFLKSKTY 194

Query: 157 ---VYSLRSNSWKNIAYGFPRSIEINRSHINSSV---FLNGSVHWCARFSCYHDNSCPWL 210
              VYSL+ ++WKNI             HI+ +V   F+NG++HW A            L
Sbjct: 195 EVHVYSLKQDAWKNIDAKV-------HCHIHDTVSRTFVNGALHWLAAKKNQGRGKSDDL 247

Query: 211 IVSFDFAKEIFQTVMMP---YDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKE 267
           I+SFD  ++  + +++P   YD S+    K L  + G L V     +    + ++WVM E
Sbjct: 248 ILSFDMVEDNLREMILPEFGYDESS--TQKCLADYKGLLSVLVYNAHRCNDNCDIWVMDE 305

Query: 268 YGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVH 327
           YG+  SWTK +T      I   L F + G++ ++   ++G  GL+  +P+    + + V 
Sbjct: 306 YGVASSWTKRFTFCLDVEILILLDFLDNGEVVVQN--KNG--GLVACDPNGGKIRDLKVA 361

Query: 328 LPYYAIQVLNFVESIIEP 345
            P   ++   ++E+++ P
Sbjct: 362 GPACLVK---YIETLVSP 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456321|ref|XP_003598441.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355487489|gb|AES68692.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 147/323 (45%), Gaps = 59/323 (18%)

Query: 5   SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQS-MRNPRPLLFRH 63
           S  LP DV+ +I  RL VK + + RCVCKSWN+L++   FV+  LN S  RN   LL+ H
Sbjct: 41  STTLPSDVIPEILCRLPVKFILQFRCVCKSWNSLISDPKFVKKQLNVSTARNIHFLLYDH 100

Query: 64  GISPSYLGFYSTKCKE----FEDLCDPPFRTQLAD------------LDVVGSCNGVLCF 107
                YLG Y    +     F ++     R + +              D VGSCNG+LC 
Sbjct: 101 ---TRYLGKYILLSEPIDSIFTNITSNSTRFEYSPNGFNGDYPRSILHDFVGSCNGILCI 157

Query: 108 CSNGSDRSLIYLWNPLIKKYMTLP---RPSLNPRY---LGFGVNSVSGHLDDFKVVYSLR 161
             +   + L+ LWNP I+K+  LP   +P +        GFG NS     D++KVV  L 
Sbjct: 158 ADDY--KGLVILWNPSIRKFKELPLFQKPYVRNHIHMSFGFGYNSSK---DNYKVVVVLV 212

Query: 162 SNSWKNIAYGFPRSIEINRSHIN------------------SSVFLNGSVHWCARFSCYH 203
              +++I       +E++    N                  S  F++G+++W        
Sbjct: 213 YFIYRDIKTDIKTEVEVHTLGTNFWRRSTQEYPLGGAPFERSGKFVSGTINWLFSKKIKS 272

Query: 204 DNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDAD-KYLNVFDGYLCVFATIPNNTFRSYEL 262
              CP  IVSFD AKE FQ +  P     D  D   L V    LCV +          ++
Sbjct: 273 GRVCPCFIVSFDLAKETFQKISPPSIGGIDVCDLSSLGVLRDCLCVTS--------GDDI 324

Query: 263 WVMKEYGLTESWTKLYTIE-KPQ 284
           W+MKEY   ESWTKL TI  KP+
Sbjct: 325 WIMKEYAKQESWTKLLTIPYKPE 347

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444949|ref|XP_004140236.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus] gi|449531147|ref|XP_004172549.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus]

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 169/374 (45%), Gaps = 56/374 (14%)

Query: 8   LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLF------ 61
           LP +V+ +IFL L  K L    CV KSW +++ +  F+  H NQS+   R LL       
Sbjct: 5   LPHEVLFNIFLNLPPKTLILCSCVSKSWRSVVANPIFISTHRNQSLTCNRKLLILGRYYY 64

Query: 62  -RHGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLW 120
            R      Y   + T   +       PF     DL +VG  NG++CF   G D   + LW
Sbjct: 65  NRTEPKVRYSLHFDTDTLDLYQELKFPFPNSNGDLKIVGVSNGLVCFL--GLD---LLLW 119

Query: 121 NPLIKKYMTLPRPSLN------PRY--LGFGVNSVSGHLDDFKVV--------------- 157
           NP I++ + +PR S        P +  LGFG +S +   DD KVV               
Sbjct: 120 NPSIQRVVDVPRTSDTVTTYGVPDFYALGFGFDSCA---DDHKVVRLLYFADKVPFSYKR 176

Query: 158 ------YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLI 211
                 Y + + SW+ I    PR  EI RS   +  F+NG+VHW A         C   I
Sbjct: 177 SPKVELYEVGTGSWRAINNKAPRC-EIVRSGW-TQAFVNGAVHWIAYREIGTGYRC--FI 232

Query: 212 VSFDFAKEIFQTVMMPYDLSTDDA-DKYLNVFDGYLCVFATIPNNTFRSY--ELWVMKEY 268
           + FD  KE F  + +P  L+     D  + V  G L +        F +Y   +WV+K+Y
Sbjct: 233 LRFDIVKECFSIITLPDCLANSSPYDLKVTVLGGALSI-TLCGWYCFETYMSSVWVLKKY 291

Query: 269 GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHL 328
            + ESWTKL +    Q +   LG  E G++ +  E + G   +++YNP+    K +G++ 
Sbjct: 292 DIPESWTKLISSGPSQELGMVLGLRENGEMLM--ESKSG--EVVLYNPYIRLMKNLGIYG 347

Query: 329 PYYAIQVLNFVESI 342
                 + ++VES+
Sbjct: 348 AEGTFYLDSYVESL 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472483|ref|XP_003606526.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355507581|gb|AES88723.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 118/381 (30%), Positives = 176/381 (46%), Gaps = 69/381 (18%)

Query: 8   LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISP 67
           LP D++ +I  RL VK L +L+C CKSWN+L++ + F + HL  S+     L    G S 
Sbjct: 26  LPFDLIEEILSRLPVKLLLQLQCACKSWNSLISDRKFAKKHL--SLSTTHSLHCVSGYSQ 83

Query: 68  SYLGFYSTKCKEFEDLCDPPFR----TQLADLDVVGSCNGVLCFCSNGSDRS--LIYLWN 121
           +++         F ++    FR    +    +D VGSCNG+LCF +  S+ S  ++ LWN
Sbjct: 84  NFILKSYPLDSVFTNVTTTVFRRPEFSVCQSVDFVGSCNGILCFAAKESEYSNFIVRLWN 143

Query: 122 PLIKKYMTLP------RPSLNPRYLGFGVNSVSGHLDDFKV------------------- 156
           P IKK   LP      R    P+   FG + VS   D++KV                   
Sbjct: 144 PSIKKLKELPSLGEPRRFRYIPKMYCFGYDPVS---DNYKVVVVFRELVDFSSSISNSMC 200

Query: 157 ---------VYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSC 207
                    VY+L +NSWK+I   FP    +      S   ++G+++W A       + C
Sbjct: 201 YKDIVTYVKVYNLGTNSWKSIPM-FPY---VASPIEQSGQCVSGTINWLAS----KKSQC 252

Query: 208 PWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKE 267
              I+S D   E ++ +++P     D     L+V    L +F+          ++WVMKE
Sbjct: 253 --FIISLDLGNESYKEILLPNYGEVDARILLLSVLRDCLILFS--------GDDVWVMKE 302

Query: 268 YGLTESWTKLYTIE-KPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGV 326
           YG  ESWTKL+TI   P  I     F +   +   GE  +G Y  ++YN    T K IG 
Sbjct: 303 YGNKESWTKLFTISYMPSFIQAIHIFEDEHVLLHCGE--YGNYSYIIYNCRDGTSKLIG- 359

Query: 327 HLPYYAIQVLNFVESIIEPVS 347
           +L   + +V   VES+I P S
Sbjct: 360 YLNMLSPEVC--VESLISPCS 378

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580390|ref|XP_002531022.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] gi|223529397|gb|EEF31360.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis]

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 170/377 (45%), Gaps = 63/377 (16%)

Query: 8   LPEDVMIDIFLRLEVKNLARLRCV-----CKSWNTLLTSKTFVEIHLNQSMRNP--RPLL 60
           LP D++ DI  RL VK+L   +CV      K W +L+  + F E HL++ + +      L
Sbjct: 625 LPHDIITDILSRLPVKSLFWFKCVSKHWLSKHWLSLIGDRGFAEKHLHRVLEDEGIHQRL 684

Query: 61  FRHGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLW 120
           F + + PS LG  +    + E     PF     D+++VGSCNG++C      D S  ++ 
Sbjct: 685 FANTVVPSSLGLNNDFEDDLEFFNSFPFYG--PDVNIVGSCNGLICIA---LDLSTFFVL 739

Query: 121 NPLIKKYMTLPRPSLNP---RYLGFGVNSVSGHLDDFKV--------------------- 156
           NP  K+   LP P   P    Y GFG ++ +   DD+KV                     
Sbjct: 740 NPGTKECRALPDPGSYPDGVAYYGFGYDASA---DDYKVLKGHTRVVVKEAGYEHHESIV 796

Query: 157 -VYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFD 215
            V+SLR+NSW+ I    P  +     +    +F++G++HW AR     D S   LI SFD
Sbjct: 797 KVFSLRTNSWRTIQDSSPSYL----PYPLPGIFVHGALHWSARHGIEPDYS---LIASFD 849

Query: 216 FAKEIFQTVMMPYDLSTDDADKY--LNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTES 273
            A E F+ V  P     +D   +  L V  G L    T       +  +++M +Y + +S
Sbjct: 850 LAAEKFKEVPEP---KGEDRQSFFTLGVLRGCLSYVKTYVEGNISA--IYMMNKYNVMDS 904

Query: 274 WTKLYTIEKPQRI-----WWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHL 328
           WTK +    P          PL +T+ G I +    +     LL+ +P S     + +  
Sbjct: 905 WTKEFRFASPSATALSPELLPLCYTKDGVIAMMNSSKE----LLLCSPKSQMLNVMEITA 960

Query: 329 PYYAIQVLNFVESIIEP 345
            ++  Q++ ++E+++ P
Sbjct: 961 GHHNFQMIAYLETLVSP 977

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
TAIR|locus:2135615	413	CPR1 "AT4G12560" [Arabidopsis	0.340	0.292	0.338	1.3e-19
TAIR|locus:2082410	427	AT3G06240 "AT3G06240" [Arabido	0.664	0.552	0.272	8e-18
TAIR|locus:2076309	389	AT3G10240 "AT3G10240" [Arabido	0.850	0.776	0.261	4.1e-16
TAIR|locus:2127465	402	AT4G22390 "AT4G22390" [Arabido	0.343	0.303	0.289	1.3e-15
TAIR|locus:2077452	417	AT3G07870 "AT3G07870" [Arabido	0.515	0.438	0.326	5e-15
TAIR|locus:2152064	392	AT5G65850 "AT5G65850" [Arabido	0.757	0.686	0.263	2.1e-14
TAIR|locus:2171509	416	AT5G47300 "AT5G47300" [Arabido	0.757	0.646	0.251	1e-13
TAIR|locus:2094947	360	AT3G16210 "AT3G16210" [Arabido	0.701	0.691	0.266	9.3e-13
TAIR|locus:2143186	438	AT5G15660 "AT5G15660" [Arabido	0.867	0.703	0.267	1.1e-11
TAIR|locus:2038618	347	AT2G27520 "AT2G27520" [Arabido	0.690	0.706	0.255	1.6e-11

TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
 Identities = 48/142 (33%), Positives = 73/142 (51%)

Query:   157 VYSLRSNSWKNIAYGFPRSIEIN---RSHI----NSSVFLNGSVHWCA--RFSCYHDNSC 207
             V+SL+ NSWK I      SI++      H+       V    S+HW    R      N  
Sbjct:   177 VFSLKKNSWKRIE-SVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFN-- 233

Query:   208 PWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLN--VFDGYLCVFATIPNNTFRSY-ELWV 264
               LIV FD A E F+ V  P  ++  + D  ++  V DG LC+      N  +SY ++W+
Sbjct:   234 --LIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMC----NYDQSYVDVWM 287

Query:   265 MKEYGLTESWTKLYTIEKPQRI 286
             MKEY + +SWTK++T++KP+ +
Sbjct:   288 MKEYNVRDSWTKVFTVQKPKSV 309

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0042177 "negative regulation of protein catabolic process" evidence=IMP

TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 8.0e-18, Sum P(2) = 8.0e-18
 Identities = 77/283 (27%), Positives = 129/283 (45%)

Query:    95 LDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLP---RPSL------NPRYLGFGVN 145
             +++VGS NG++C  S G     ++L+NP       LP   RP        N +  GFG +
Sbjct:   163 VEIVGSSNGLVCI-SPGE--GAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFD 219

Query:   146 SVSGHLDDFKVV--------------YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNG 191
              ++   DD+K+V              YSL+++SW+ I      + E N     S V  NG
Sbjct:   220 GLT---DDYKLVKLVATSEDILDASVYSLKADSWRRICN---LNYEHNDGSYTSGVHFNG 273

Query:   192 SVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFAT 251
             ++HW    S ++      ++V+FD   E F+ + +P D + D + ++ N   G L     
Sbjct:   274 AIHWVFTESRHNQR----VVVAFDIQTEEFREMPVP-DEAEDCSHRFSNFVVGSLNGRLC 328

Query:   252 IPNNTFRSYE-LWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYG 310
             + N+ +  ++ +WVM EYG  +SW+++  I    R   PL  T+  +  +       G  
Sbjct:   329 VVNSCYDVHDDIWVMSEYGEAKSWSRI-RINLLYRSMKPLCSTKNDEEVL---LELDG-D 383

Query:   311 LLVYNPH---SDTFKCIGVHLPYYAIQVLNFVESIIEPVSQSL 350
             L++YN     S      GV L     +   +VES+I P S  +
Sbjct:   384 LVLYNFETNASSNLGICGVKLSD-GFEANTYVESLISPNSYGI 425

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076309 AT3G10240 "AT3G10240" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 4.1e-16, P = 4.1e-16
 Identities = 91/348 (26%), Positives = 156/348 (44%)

Query:     2 KCSSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLL- 60
             K  S  +P D++ +I LRL  K++AR RCV K W+++ T   F+ +    + R+PR LL 
Sbjct:    21 KSGSSSIPLDLVSEILLRLPEKSVARFRCVSKPWSSITTEPYFINL---LTTRSPRLLLC 77

Query:    61 FRHG----IS--PSYLGFYST--KCKEFEDLCDP---PFRTQLADLDVVGSCNGVLCFCS 109
             F+      +S  P +   + T  K   +  L D     F  ++       S NG++CF  
Sbjct:    78 FKANEKFFVSSIPQHRQTFETWNKSHSYSQLIDRYHMEFSEEMNYFPPTESVNGLICF-- 135

Query:   110 NGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGF--GVNSVSGHLDDFKVVYSLRSNSWKN 167
                + + + +WNP  ++ + LP+P+ N   L    G + V G      + +S   ++ + 
Sbjct:   136 --QESARLIVWNPSTRQLLILPKPNGNSNDLTIFLGYDPVEGKHKVMCMEFSATYDTCRV 193

Query:   168 IAYGFP----RSIEINRSH----INSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE 219
             +  G      R+++ +  H     +S   +NG V+  A    Y  + C W+++SFD   E
Sbjct:   194 LTLGSAQKLWRTVKTHNKHRSDYYDSGRCINGVVYHIA----YVKDMCVWVLMSFDVRSE 249

Query:   220 IFQTVMMPYDLSTDDADKYLNVFDGYL-CVFATI-PNNTFRSYELWVMKEYGLTES---W 274
             IF  + +P   S+D     L  ++G L CV   I   N  R   LW+++++    S    
Sbjct:   250 IFDMIELP---SSDVHKDVLIDYNGRLACVGREIIEKNGIR---LWILEKHNKWSSKDFL 303

Query:   275 TKLYTIEKPQRI--WWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 320
               L  I+K      +   GFT  G+I       H    +  Y+P  +T
Sbjct:   304 APLVHIDKSLSTNKFLLKGFTHAGEIIYVESMFHKSAKIFFYDPVRNT 351

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
 Identities = 40/138 (28%), Positives = 67/138 (48%)

Query:   157 VYSLRSNSWKNIAYGFPRSIE-INRS-HI----NSSVFLNGSVHWCA--RFSCYHDNSCP 208
             V+SL+ NSWK +   F   I  I+   H+       V +N  +HW    R      N+  
Sbjct:   176 VFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNA-- 233

Query:   209 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEY 268
               I+ +D A +    +  P +L  +D +  + V DG +C+      + +   ++WV+KEY
Sbjct:   234 --IIKYDLASDDIGVLSFPQELYIED-NMDIGVLDGCVCLMCY---DEYSHVDVWVLKEY 287

Query:   269 GLTESWTKLYTIEKPQRI 286
                +SWTKLY + KP+ +
Sbjct:   288 EDYKSWTKLYRVPKPESV 305

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 5.0e-15, P = 5.0e-15
 Identities = 66/202 (32%), Positives = 98/202 (48%)

Query:     8 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNP-RPLLFRHGIS 66
             LPED++ DIF RL + ++ARL  VC+SW ++LT        L+ S  +P +P L  H  S
Sbjct:    28 LPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHG----RLSSSSSSPTKPCLLLHCDS 83

Query:    67 PSYLGFYSTKCKEFEDLCDPP-----FRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWN 121
             P   G +     E E           F + + + DVVGSCNG+LC   +  + SL YL+N
Sbjct:    84 PIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSL-YLYN 142

Query:   122 PLIKKYMTLPRPS--LNPRYL--GFGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIE 177
             P     + LP  S   + + L  GFG + ++      K+VY   S+S  N  Y     I+
Sbjct:   143 PFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQ 202

Query:   178 INRSHIN----SSVFLNGSVHW 195
               +S +     SS   + S+ W
Sbjct:   203 YKQSEVQILTLSSKTTDQSLSW 224

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2152064 AT5G65850 "AT5G65850" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 79/300 (26%), Positives = 141/300 (47%)

Query:     5 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHG 64
             S ++P D++I+I LRL  K++A  RCV K W +++  + F E+ L +S+  P+ LLF   
Sbjct:    32 SVQIPVDIIIEILLRLPAKSIATCRCVSKLWISVICRQDFTELFLTRSLHRPQ-LLFCCK 90

Query:    65 ISPSYLGFYSTKCKE-FEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPL 123
                +   F S + +  +E+      +       +    NG++CF     + ++  + NP 
Sbjct:    91 KDGNLFFFSSPQLQNPYENSSAISLKNFSLCYKISRPVNGLICFKRKEMNETVTVICNPS 150

Query:   124 IKKYMTLPRP---SLNPRYLGFGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFP----RSI 176
                 ++LP+P   S+ P    F    +      FKV+ S +S+  + +  G      R I
Sbjct:   151 TGHTLSLPKPMKTSIGPSRF-FVYEPIQ---KQFKVLLSYKSDEHQVLTLGTGELSWRII 206

Query:   177 EINRSHI--NSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ--TVMMPYDLST 232
             E +  HI   S + +NG +++ A     + +S  ++IV FD   E F+  TVM  +  + 
Sbjct:   207 ECSMPHILGMSEICINGVLYYPA----INLSSGDYIIVCFDVRSEKFRFITVMEEFIKAA 262

Query:   233 DDADKYLNVFDGYLCVFAT----IPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWW 288
              D    +N ++G L    +      +   +S ELWV+++    E W+K +T   P   WW
Sbjct:   263 HDGT-LIN-YNGKLASLVSERYCFVDGRSKSIELWVLQDAEKKE-WSK-HTYVLPA--WW 316

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171509 AT5G47300 "AT5G47300" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 76/302 (25%), Positives = 137/302 (45%)

Query:     8 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHG--- 64
             LP D++ +I  R+   +L +LR  CK WN L  +  F   HL+++ ++ + L+       
Sbjct:    46 LPGDLLEEILCRVPATSLKQLRSTCKQWNNLFNNGRFTRKHLDKAPKDFQNLMLSDSRVF 105

Query:    65 -ISPSYLGFYSTKCKEFEDLCDP--PFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWN 121
              +S S+ G  S +      L D    F  +  ++  V  C+G+L  C++ +D + I +WN
Sbjct:   106 SMSVSFHGIPSVEATCELSLIDSFSSFEDKF-EISQVFHCDGLL-LCTD-ADNTRIVVWN 162

Query:   122 PLIKKYMTLPRPSLNPRYLGFG------------VNSVSGH-LDDFKV-VYSLRSNSWKN 167
             P   K   +  P+    Y  FG            + S SG+  ++ ++ +Y + S SW+ 
Sbjct:   163 PCTGKTRWI-EPNNRCYYYAFGSYLDKSYGNSYKILSYSGYGYENQELAIYEINSQSWRF 221

Query:   168 IAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMP 227
             +     R   + R + +  V L G  +W A  S   + +    +VSFD+  E F+ + +P
Sbjct:   222 L--DVTRDCILER-YTDYGVSLKGHTYWFA--SDEKEKNLSVFLVSFDYTTERFRRLRLP 276

Query:   228 YDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTE--SWTKLYTIEKPQR 285
             Y     +      V +  L V      NT R+ E+WV    G T+  SW+ +  ++ P  
Sbjct:   277 YQCPDYNTASLSVVREEKLAVLLQ-RENTSRT-EIWVTSRIGETKVVSWSMVLAVDFPSE 334

Query:   286 IW 287
             ++
Sbjct:   335 LF 336

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 9.3e-13, P = 9.3e-13
 Identities = 79/296 (26%), Positives = 135/296 (45%)

Query:     4 SSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRH 63
             S F LPE++ I+I +RL +K+LAR RCVCK+W  L+    F E + + S     P  F  
Sbjct:     2 SKF-LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMS-----PAKFVS 55

Query:    64 GISPS-YLGFYSTKCKEFEDLCDPPFRTQLADLDV-VGSCNGVLCFCSNGSDRSLIYLWN 121
                 + Y+     K     +  D P    + D    V  C+G LC      + +L+ +WN
Sbjct:    56 FYDKNFYMLDVEGKHPVITNKLDFPLDQSMIDESTCVLHCDGTLCVTLK--NHTLM-VWN 112

Query:   122 PLIKKYMTLPRPSL--NPRYLGFGVNSVSGHLDDFKVV-------------YSLRSNSW- 165
             P  K++  +P P +  +   LGFG + V  H DD+KVV             +  R+ SW 
Sbjct:   113 PFSKQFKIVPNPGIYQDSNILGFGYDPV--H-DDYKVVTFIDRLDVSTAHVFEFRTGSWG 169

Query:   166 KNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM 225
             +++   +P     +R       FL+  ++W A    Y  +S    I+ F+ +   ++ + 
Sbjct:   170 ESLRISYPDWHYRDRR----GTFLDQYLYWIA----YR-SSADRFILCFNLSTHEYRKLP 220

Query:   226 MP-YDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI 280
             +P Y+     +  +L V    LC+  T      +   + VM++ G   SW+K+ ++
Sbjct:   221 LPVYNQGVTSS--WLGVTSQKLCI--TEYEMCKKEIRISVMEKTG---SWSKIISL 269

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2143186 AT5G15660 "AT5G15660" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 94/352 (26%), Positives = 155/352 (44%)

Query:     8 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFR--HGI 65
             +P D++I+I  RL +K++AR   V K W T + S  F + +   S   PR L+    +  
Sbjct:    28 IPHDLVIEILERLPLKSVARFLTVSKLWATTIRSPDFRKSYRGGSSSEPRTLIVSDLNFK 87

Query:    66 SPS-YLGFY--STKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNP 122
              P+  L F+  S     F      PF     +       NG++     G+D+ +I   NP
Sbjct:    88 EPNPKLHFFRPSISSPSFLSSLTCPFTYPRHEEYYYHHVNGLISV-GYGTDQIVI---NP 143

Query:   123 LIKKYMTLPRPSLNPRYL--GFGVNSVSGHLDDFKVVYS---LRSN----SWKNIAYGF- 172
                K++TLPRP    + +   FG +SVS   D +KV+     LR +    S ++  Y   
Sbjct:   144 TTGKFITLPRPKTRRKLVISFFGYDSVS---DQYKVLCMTERLRGHPEEASSQHQVYTLG 200

Query:   173 --PRSIE-INRS--HIN---SSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT- 223
                +S + IN S  H     ++V +NG V++ A+        C   ++ FD   +     
Sbjct:   201 AKQKSWKMINCSIPHRPWSWNAVCINGVVYYIAKTGEGMFRRC---LMRFDLKSDNLDLC 257

Query:   224 VMMPYDLSTDDADKYLNVFDGYLCVFATIPNN-TFRSYELWVMKEYGLTESWTKLYTIE- 281
              ++P ++ T   D +L  + G +     IPN   F +Y++WVM + G    W K  T   
Sbjct:   258 TILPEEIQTSLHDYFLINYKGKVA----IPNQPNFYTYDVWVMNQEGGKIEWLKNITFTI 313

Query:   282 KPQ----RIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLP 329
             KP+    R  +  G T  G+  +        + +  YNP  ++F+ I V  P
Sbjct:   314 KPRKGFVRYLFVTGTTHTGEFILAPTSYTDEFYVFHYNPDMNSFRKIRVQAP 365

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2038618 AT2G27520 "AT2G27520" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 75/294 (25%), Positives = 129/294 (43%)

Query:     8 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISP 67
             LP D++ +I  RL   +L RLR  CK WN L     F+    +++ +    L+       
Sbjct:     6 LPWDLVDEILSRLPATSLGRLRFTCKRWNALFKDPEFITKQFHKAAKQDLVLML------ 59

Query:    68 SYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVL-CFCSNGSDRSLIYLWNPLIKK 126
             S  G YS       +L + P   ++A    V  CNG+L C    G+   L+ + NP   +
Sbjct:    60 SNFGVYSMST----NLKEIPNNIEIAQ---VFHCNGLLLCSTEEGNKTKLVVV-NPCTGQ 111

Query:   127 YMTL-PRPSLNPRY---LGFGVNSVSGHLDDFKV-----------VYSLRSNSWKNIAYG 171
                + PR   N  +   LG+G NS     D +K+           ++ L+SNSW+ ++  
Sbjct:   112 TRWIEPRTDYNYNHDIALGYGNNSTKKSYDSYKILRITYGCKLVEIFELKSNSWRVLSKV 171

Query:   172 FPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS 231
              P ++E    H    V   G+ +W + ++ ++       I+SFDF  E F++V +P+   
Sbjct:   172 HP-NVE---KHYYGGVSFKGNTYWLS-YTKFN-------ILSFDFTTETFRSVPLPFLYQ 219

Query:   232 TDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTE---SWTKLYTIE 281
                    L+V  +  L +  +          +W+  +   TE   SW+K +T+E
Sbjct:   220 DGFVTLALSVVREEQLLLLRS--RFDMGQVGIWMCNKID-TETVLSWSKSFTLE 270

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	355
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	4e-23
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	3e-07
pfam00646	48	pfam00646, F-box, F-box domain	1e-06
pfam12937	47	pfam12937, F-box-like, F-box-like	2e-06
pfam07734	159	pfam07734, FBA_1, F-box associated	2e-05

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 95.5 bits (238), Expect = 4e-23
 Identities = 63/247 (25%), Positives = 100/247 (40%), Gaps = 48/247 (19%)

Query: 98  VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRY-----LGFGVNSVSGHLD 152
           V  C+G++CF    S    + +WNP   +   LP P              G + +     
Sbjct: 1   VVPCDGLICF----SYGKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIE---K 53

Query: 153 DFKV----------------VYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWC 196
            +KV                VY+L SNSW+ I    P     +R      V +NG +++ 
Sbjct: 54  QYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHPLKSR-----GVCINGVLYYL 108

Query: 197 ARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKY--LNVFDGYLCVFATIPN 254
           A       N   + IVSFD + E F+   +P      D+  Y  L  + G L V      
Sbjct: 109 AYT--LKTNPD-YFIVSFDVSSERFKE-FIPLPCGNSDSVDYLSLINYKGKLAVLK--QK 162

Query: 255 NTFRSYELWVMKEYGLTESWTKLYTIEKPQRI-----WWPLGFTERGKIFIRGECRHGGY 309
               +++LWV+ + G  E W+KL+T+  P         +  GFT++G+I +  E  +  Y
Sbjct: 163 KDTNNFDLWVLNDAGKQE-WSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFY 221

Query: 310 GLLVYNP 316
            +  YN 
Sbjct: 222 -IFYYNV 227

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 14/37 (37%), Positives = 25/37 (67%)

Query: 8  LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTF 44
          LP++++ +I  +L+ K+L RLR V + W +L+ S  F
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37

Length = 41

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 7  RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLN 50
           LP+D++++I  RL+ K+L RL  V K W +L+ S    +  L 
Sbjct: 5  DLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 7  RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTL 38
           LP+++++ IF  L+ ++L RL  VC+ W  L
Sbjct: 3  DLPDEILLQIFSYLDPRDLLRLALVCRRWREL 34

This is an F-box-like family. Length = 47

>gnl|CDD|219544 pfam07734, FBA_1, F-box associated

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 13/106 (12%)

Query: 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM-MPYDLSTDDADKYLNVFDG 244
            V L G+ +W A       N   +L+ SFDF  E F   + +P+     D    L+V   
Sbjct: 1   GVSLKGNTYWLAS--EKETNEEDFLL-SFDFTTERFGPRLPLPFQSPDLDT-VSLSVVRE 56

Query: 245 -YLCVFATIPNNTFRSY--ELWVMKEYGLTE-SWTKLYTIEKPQRI 286
             L V          +   E+WV  +      SW+K  T++ P   
Sbjct: 57  EKLAVL----LQCDDTSKIEIWVTTKIEPNAVSWSKFLTVDMPPLP 98

Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination. Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	100.0
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	99.71
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.67
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.59
PHA02713	557	hypothetical protein; Provisional	99.55
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.51
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.36
PHA02713	557	hypothetical protein; Provisional	99.35
PHA03098	534	kelch-like protein; Provisional	99.34
PHA02790	480	Kelch-like protein; Provisional	99.34
PLN02153	341	epithiospecifier protein	99.16
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.13
PLN02193	470	nitrile-specifier protein	99.12
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.12
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.04
PHA03098	534	kelch-like protein; Provisional	99.02
PHA02790	480	Kelch-like protein; Provisional	99.02
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.92
PLN02153	341	epithiospecifier protein	98.89
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.82
PLN02193	470	nitrile-specifier protein	98.8
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.72
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.71
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.64
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.57
KOG4693	392	consensus Uncharacterized conserved protein, conta	98.39
KOG1230	521	consensus Protein containing repeated kelch motifs	98.0
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.35
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	97.26
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	97.24
KOG1230	521	consensus Protein containing repeated kelch motifs	97.2
KOG4693	392	consensus Uncharacterized conserved protein, conta	97.17
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.1
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	96.89
smart00284	255	OLF Olfactomedin-like domains.	96.87
PF13964	50	Kelch_6: Kelch motif	96.77
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	96.5
KOG2997	366	consensus F-box protein FBX9 [General function pre	96.35
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	96.21
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.06
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.23
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	95.2
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	95.17
PF13964	50	Kelch_6: Kelch motif	95.05
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	95.02
KOG3545	249	consensus Olfactomedin and related extracellular m	94.78
PF07762	131	DUF1618: Protein of unknown function (DUF1618); In	94.21
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	93.41
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	93.4
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	93.26
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	93.04
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	92.78
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	92.52
KOG0310	487	consensus Conserved WD40 repeat-containing protein	91.9
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	91.82
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	91.15
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	91.14
smart00612	47	Kelch Kelch domain.	91.06
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	89.78
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	89.36
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	89.09
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	88.5
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	88.23
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	86.94
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	86.76
PLN02772	398	guanylate kinase	85.88
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	85.86
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	85.3
KOG0294	362	consensus WD40 repeat-containing protein [Function	85.2
KOG4341	483	consensus F-box protein containing LRR [General fu	84.41
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	84.12
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	83.71
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	83.32
KOG1963	792	consensus WD40 repeat protein [General function pr	82.98
PRK11028	330	6-phosphogluconolactonase; Provisional	82.77
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	82.7
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	82.28
KOG0316	307	consensus Conserved WD40 repeat-containing protein	82.25
KOG2055	514	consensus WD40 repeat protein [General function pr	81.06
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	80.67
PF13415	49	Kelch_3: Galactose oxidase, central domain	80.31
PF13415	49	Kelch_3: Galactose oxidase, central domain	80.17

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=100.00  E-value=3.2e-32  Score=236.30  Aligned_cols=200  Identities=29%  Similarity=0.557  Sum_probs=154.1

Q ss_pred             EeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCC---Cc--eeEEEEecCCCCCCcEEEE---------------
Q 018497           98 VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLN---PR--YLGFGVNSVSGHLDDFKVV---------------  157 (355)
Q Consensus        98 ~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~---~~--~~~~g~d~~~~~~~~ykvv---------------  157 (355)
                      +++||||||+..    ...++||||+||+++.||+++..   ..  .++||||+.   +++||||               
T Consensus         1 ~~sCnGLlc~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~---~~~YKVv~~~~~~~~~~~~~~~   73 (230)
T TIGR01640         1 VVPCDGLICFSY----GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPI---EKQYKVLCFSDRSGNRNQSEHQ   73 (230)
T ss_pred             CcccceEEEEec----CCcEEEECCCCCCEEecCCCCCcccccccceEEEeeccc---CCcEEEEEEEeecCCCCCccEE
Confidence            479999999886    26899999999999999987652   11  289999998   9999999               


Q ss_pred             -EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceee-EecCCCCCCCC-C
Q 018497          158 -YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLSTD-D  234 (355)
Q Consensus       158 -yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~-~i~lP~~~~~~-~  234 (355)
                       |++++++||.+. ..+.... ....   +|++||.+||++...  . ......|++||+++|+|+ .+++| ..... .
T Consensus        74 Vys~~~~~Wr~~~-~~~~~~~-~~~~---~v~~~G~lyw~~~~~--~-~~~~~~IvsFDl~~E~f~~~i~~P-~~~~~~~  144 (230)
T TIGR01640        74 VYTLGSNSWRTIE-CSPPHHP-LKSR---GVCINGVLYYLAYTL--K-TNPDYFIVSFDVSSERFKEFIPLP-CGNSDSV  144 (230)
T ss_pred             EEEeCCCCccccc-cCCCCcc-ccCC---eEEECCEEEEEEEEC--C-CCCcEEEEEEEcccceEeeeeecC-ccccccc
Confidence             999999999988 3332221 1222   899999999998764  0 112238999999999999 58999 55432 2


Q ss_pred             CceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-----eeEeEEEeeCCcEEEEEEeeCC--
Q 018497          235 ADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-----IWWPLGFTERGKIFIRGECRHG--  307 (355)
Q Consensus       235 ~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~g~i~~~~~~~~~--  307 (355)
                      ....|++++|+|+++......  .+++||+|+++++ .+|+++++|+....     ...|.++..+|+|++.  . ..  
T Consensus       145 ~~~~L~~~~G~L~~v~~~~~~--~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~--~-~~~~  218 (230)
T TIGR01640       145 DYLSLINYKGKLAVLKQKKDT--NNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLC--C-EDEN  218 (230)
T ss_pred             cceEEEEECCEEEEEEecCCC--CcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEE--e-CCCC
Confidence            356899999999999886431  4699999998875 45999999986332     2347888999999998  5 32  


Q ss_pred             ceEEEEEeCCCC
Q 018497          308 GYGLLVYNPHSD  319 (355)
Q Consensus       308 ~~~l~~yd~~t~  319 (355)
                      +..++.||++++
T Consensus       219 ~~~~~~y~~~~~  230 (230)
T TIGR01640       219 PFYIFYYNVGEN  230 (230)
T ss_pred             ceEEEEEeccCC
Confidence            324999999986

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=99.71  E-value=1.1e-15  Score=125.11  Aligned_cols=147  Identities=31%  Similarity=0.513  Sum_probs=103.4

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCC-CCCceEEEEE-CCeEEEEEecCCCCccEEEE
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLST-DDADKYLNVF-DGYLCVFATIPNNTFRSYEL  262 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~-~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~i  262 (355)
                      +|++||.+||++...   .......|++||+.+|+| ..+++| .... ......|++. +|+||++.....  ...++|
T Consensus         1 gV~vnG~~hW~~~~~---~~~~~~~IlsFDl~~E~F~~~~~lP-~~~~~~~~~~~L~~v~~~~L~~~~~~~~--~~~~~I   74 (164)
T PF07734_consen    1 GVFVNGALHWLAYDE---NNDEKDFILSFDLSTEKFGRSLPLP-FCNDDDDDSVSLSVVRGDCLCVLYQCDE--TSKIEI   74 (164)
T ss_pred             CEEECCEEEeeEEec---CCCCceEEEEEeccccccCCEECCC-CccCccCCEEEEEEecCCEEEEEEeccC--CccEEE
Confidence            689999999999886   111222899999999999 888999 5554 3355677555 679999976443  146999


Q ss_pred             EEeccCC-CCCCeEEEEEecCCCc---e----eEeEEEeeCCcEEEEEEeeCCc-----eEEEEEeCCCCeEEEEEEecC
Q 018497          263 WVMKEYG-LTESWTKLYTIEKPQR---I----WWPLGFTERGKIFIRGECRHGG-----YGLLVYNPHSDTFKCIGVHLP  329 (355)
Q Consensus       263 W~l~~~~-~~~~W~~~~~i~~~~~---~----~~~~~~~~~g~i~~~~~~~~~~-----~~l~~yd~~t~~~~~v~~~~~  329 (355)
                      |+|++++ ++.+|+|..+|+....   .    ...+.+..++++++.  .....     ..++.|+ +.+..+++.+...
T Consensus        75 Wvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~--~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~  151 (164)
T PF07734_consen   75 WVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVC--CDKETQREEKNKIYIVG-EDGKFIEVDIEDK  151 (164)
T ss_pred             EEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEE--EcCCCCccceeEEEEEc-CCCEEEEcccccC
Confidence            9999765 3789999999986654   1    122333444567776  31111     3578888 7788888887432


Q ss_pred             -cceeEEeeeecc
Q 018497          330 -YYAIQVLNFVES  341 (355)
Q Consensus       330 -~~~~~~~~y~~S  341 (355)
                       ..+..++.|+||
T Consensus       152 ~~~~~~~~~YvpS  164 (164)
T PF07734_consen  152 SSCWPSICNYVPS  164 (164)
T ss_pred             CCCCCCEEEECCC
Confidence             345678899997

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.67  E-value=2.1e-15  Score=118.31  Aligned_cols=110  Identities=25%  Similarity=0.485  Sum_probs=86.2

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCC-CCCCceEEEEECCeEEEEEecCCCCccEEEEEE
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVFDGYLCVFATIPNNTFRSYELWV  264 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~-~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~  264 (355)
                      |+++||.+||++...    ......|++||+++|+|+.|++| ... .......|++++|+|+++..........++||+
T Consensus         1 gicinGvly~~a~~~----~~~~~~IvsFDv~~E~f~~i~~P-~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWv   75 (129)
T PF08268_consen    1 GICINGVLYWLAWSE----DSDNNVIVSFDVRSEKFRFIKLP-EDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWV   75 (129)
T ss_pred             CEEECcEEEeEEEEC----CCCCcEEEEEEcCCceEEEEEee-eeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEE
Confidence            689999999999873    45678999999999999999998 332 233678999999999999887652234699999


Q ss_pred             eccCCCCCCeEEEEEecCCC-c------eeEeEEEeeCCcEEEE
Q 018497          265 MKEYGLTESWTKLYTIEKPQ-R------IWWPLGFTERGKIFIR  301 (355)
Q Consensus       265 l~~~~~~~~W~~~~~i~~~~-~------~~~~~~~~~~g~i~~~  301 (355)
                      |+|++ +++|++.+.+-... .      ...+.+++++|+|++.
T Consensus        76 LeD~~-k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~  118 (129)
T PF08268_consen   76 LEDYE-KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA  118 (129)
T ss_pred             eeccc-cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence            99986 47899886643221 1      4677888888888887

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.59  E-value=7.6e-13  Score=119.36  Aligned_cols=288  Identities=16%  Similarity=0.178  Sum_probs=156.7

Q ss_pred             CCCCCCCHHHHHHHHhcCC-cccchhhcccchhhHhhhCChHHHHHHHhcCCCCCCcEEEeec-CCCCceeeeccCCccc
Q 018497            3 CSSFRLPEDVMIDIFLRLE-VKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHG-ISPSYLGFYSTKCKEF   80 (355)
Q Consensus         3 ~~~~~LP~dll~eIL~rLP-~~~l~r~r~VcK~W~~li~~~~F~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (355)
                      ..+++||+||+..|..||| ..+++|||+|||+||+.+....   + ....++.|+ +++... +...   +-+++. ..
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~-~~~~~~~~~-~~~~~~~~~~~---~~~~~~-~~   72 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K-KNPFRTRPL-ILFNPINPSET---LTDDRS-YI   72 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c-cCCcccccc-cccCcccCCCC---cccccc-cc
Confidence            4688999999999999997 5899999999999999876411   0 000111122 111110 0000   000000 00


Q ss_pred             ccCCCCCCCCCCCCeEE---EeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCC-ce--------eEE-EEecC
Q 018497           81 EDLCDPPFRTQLADLDV---VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP-RY--------LGF-GVNSV  147 (355)
Q Consensus        81 ~~~~~p~~~~~~~~~~~---~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~-~~--------~~~-g~d~~  147 (355)
                      ......+..  ...+.+   .++..|+|.-.......+.+.+.||+++....+|+-.... .+        +.+ +.+..
T Consensus        73 ~~~~~~ls~--~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~  150 (373)
T PLN03215         73 SRPGAFLSR--AAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKR  150 (373)
T ss_pred             ccccceeee--eEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecccc
Confidence            000000000  000111   1345788877653224578899999999987777532221 00        212 11101


Q ss_pred             ---------------C-CCCCcEEEE---------EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeecc
Q 018497          148 ---------------S-GHLDDFKVV---------YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCY  202 (355)
Q Consensus       148 ---------------~-~~~~~ykvv---------yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~  202 (355)
                                     + +...+|-|+         | -..++|..++ ......   ..    .++.+|++|.+...+  
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~-w~~~~Wt~l~-~~~~~~---~D----Ii~~kGkfYAvD~~G--  219 (373)
T PLN03215        151 RETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINY-WDGNVLKALK-QMGYHF---SD----IIVHKGQTYALDSIG--  219 (373)
T ss_pred             cccccceeEEEEEEeecCCCcceEEEEEeecCcEee-ecCCeeeEcc-CCCcee---eE----EEEECCEEEEEcCCC--
Confidence                           0 001122233         2 2257888887 422221   22    899999999996654  


Q ss_pred             CCCCCCcEEEEEEcCCceeeEecCCCC-CCCC---CCceEEEEECCeEEEEEecCCC-------------CccEEEEEEe
Q 018497          203 HDNSCPWLIVSFDFAKEIFQTVMMPYD-LSTD---DADKYLNVFDGYLCVFATIPNN-------------TFRSYELWVM  265 (355)
Q Consensus       203 ~~~~~~~~Il~fD~~~~~~~~i~lP~~-~~~~---~~~~~L~~~~G~L~~v~~~~~~-------------~~~~l~iW~l  265 (355)
                             .+.++|..- +.+.+..++. ...+   .....|+++.|+|++|......             ....++|+++
T Consensus       220 -------~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vfkl  291 (373)
T PLN03215        220 -------IVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKF  291 (373)
T ss_pred             -------eEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEE
Confidence                   677777432 2223211101 1111   1346899999999999874211             1246889998


Q ss_pred             ccCCCCCCeEEEEEecCCCcee---EeEEEe-------eCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEEe
Q 018497          266 KEYGLTESWTKLYTIEKPQRIW---WPLGFT-------ERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVH  327 (355)
Q Consensus       266 ~~~~~~~~W~~~~~i~~~~~~~---~~~~~~-------~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~~  327 (355)
                      +..  ..+|+++..++...++.   ....+.       ..+-|||.  .  +. ...+||++.++...+...
T Consensus       292 D~~--~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt--d--d~-~~~v~~~~dg~~~~~~~~  356 (373)
T PLN03215        292 DDE--LAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT--E--DT-MPKVFKLDNGNGSSIETT  356 (373)
T ss_pred             cCC--CCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE--C--CC-cceEEECCCCCccceEee
Confidence            753  46899999887554411   111111       12368888  4  54 378999999998777554

>PHA02713 hypothetical protein; Provisional

Probab=99.55  E-value=9.4e-13  Score=128.02  Aligned_cols=238  Identities=12%  Similarity=0.092  Sum_probs=150.6

Q ss_pred             eeeccCCcccccCCCCCCCCCCCCeEEEeeeCceEEEeecCC----CCceEEEEcCCcccEEecCCCCCCCce-------
Q 018497           71 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGS----DRSLIYLWNPLIKKYMTLPRPSLNPRY-------  139 (355)
Q Consensus        71 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~GLl~l~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~-------  139 (355)
                      ..|++....|..++....+  . ...-++..+|-|.+.++..    ....+..+||.+++|..+|+++..+..       
T Consensus       275 ~~yd~~~~~W~~l~~mp~~--r-~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~  351 (557)
T PHA02713        275 LVYNINTMEYSVISTIPNH--I-INYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID  351 (557)
T ss_pred             EEEeCCCCeEEECCCCCcc--c-cceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence            4577777777766522111  1 1223455677766555311    134678999999999999998866432       


Q ss_pred             ---eEEEEecCCCCCCcEEEE--EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccC-----------
Q 018497          140 ---LGFGVNSVSGHLDDFKVV--YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYH-----------  203 (355)
Q Consensus       140 ---~~~g~d~~~~~~~~ykvv--yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-----------  203 (355)
                         +.+|-...   ....+-+  ||.++++|+.++ .+|.......     .+.++|++|.+++.....           
T Consensus       352 g~IYviGG~~~---~~~~~sve~Ydp~~~~W~~~~-~mp~~r~~~~-----~~~~~g~IYviGG~~~~~~~~~~~~~~~~  422 (557)
T PHA02713        352 DTIYAIGGQNG---TNVERTIECYTMGDDKWKMLP-DMPIALSSYG-----MCVLDQYIYIIGGRTEHIDYTSVHHMNSI  422 (557)
T ss_pred             CEEEEECCcCC---CCCCceEEEEECCCCeEEECC-CCCccccccc-----EEEECCEEEEEeCCCcccccccccccccc
Confidence               33332111   1111223  999999999999 7776654332     788999999998753100           


Q ss_pred             ----CCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCC-CCeEEE
Q 018497          204 ----DNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLT-ESWTKL  277 (355)
Q Consensus       204 ----~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~-~~W~~~  277 (355)
                          +......+.+||+.+++|+.+ ++| ..+   ....+++.+|+||++++..+.....-.+...+.  .+ .+|+.+
T Consensus       423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~~r---~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp--~~~~~W~~~  496 (557)
T PHA02713        423 DMEEDTHSSNKVIRYDTVNNIWETLPNFW-TGT---IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT--NTYNGWELI  496 (557)
T ss_pred             cccccccccceEEEECCCCCeEeecCCCC-ccc---ccCcEEEECCEEEEEeCCCCCCccceeEEEecC--CCCCCeeEc
Confidence                000135799999999999988 666 444   345688999999999876431101111223322  23 479998


Q ss_pred             EEecCCCceeEeEEEeeCCcEEEEEEeeCCc-eEEEEEeCCCCeEEEEEEecCc
Q 018497          278 YTIEKPQRIWWPLGFTERGKIFIRGECRHGG-YGLLVYNPHSDTFKCIGVHLPY  330 (355)
Q Consensus       278 ~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~l~~yd~~t~~~~~v~~~~~~  330 (355)
                      ..++....  ..-.+.-+|+||+.  ++.++ ..+-.||++|++|..+.-+...
T Consensus       497 ~~m~~~r~--~~~~~~~~~~iyv~--Gg~~~~~~~e~yd~~~~~W~~~~~~~~~  546 (557)
T PHA02713        497 TTTESRLS--ALHTILHDNTIMML--HCYESYMLQDTFNVYTYEWNHICHQHSN  546 (557)
T ss_pred             cccCcccc--cceeEEECCEEEEE--eeecceeehhhcCcccccccchhhhcCC
Confidence            88876542  22223346799999  42333 2588999999999999766543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.51  E-value=3.8e-12  Score=123.47  Aligned_cols=230  Identities=16%  Similarity=0.192  Sum_probs=154.8

Q ss_pred             eeeccCCcccccCCCCCCCCCCCCeEEEeeeCceEEEeecCC----CCceEEEEcCCcccEEecCCCCCCCce-------
Q 018497           71 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGS----DRSLIYLWNPLIKKYMTLPRPSLNPRY-------  139 (355)
Q Consensus        71 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~GLl~l~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~-------  139 (355)
                      ..|++..+.|..+.....+   ....-++..+|.|...++..    .......+||.+++|..+|++...+..       
T Consensus       304 e~yd~~~~~w~~~a~m~~~---r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~  380 (571)
T KOG4441|consen  304 ECYDPKTNEWSSLAPMPSP---RCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD  380 (571)
T ss_pred             EEecCCcCcEeecCCCCcc---cccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC
Confidence            3677777777665533222   12344667778777665422    235789999999999999999888643       


Q ss_pred             ---eEE-EEecCCCCCCcEEEE--EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEE
Q 018497          140 ---LGF-GVNSVSGHLDDFKVV--YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVS  213 (355)
Q Consensus       140 ---~~~-g~d~~~~~~~~ykvv--yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~  213 (355)
                         +++ |+|.    .+.++-+  ||.++++|..++ .++.......     ++.++|.+|.+++..  ........+.+
T Consensus       381 g~iYavGG~dg----~~~l~svE~YDp~~~~W~~va-~m~~~r~~~g-----v~~~~g~iYi~GG~~--~~~~~l~sve~  448 (571)
T KOG4441|consen  381 GKLYAVGGFDG----EKSLNSVECYDPVTNKWTPVA-PMLTRRSGHG-----VAVLGGKLYIIGGGD--GSSNCLNSVEC  448 (571)
T ss_pred             CEEEEEecccc----ccccccEEEecCCCCcccccC-CCCcceeeeE-----EEEECCEEEEEcCcC--CCccccceEEE
Confidence               222 2332    2233333  999999999999 7776443332     789999999999865  11124578999


Q ss_pred             EEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEE
Q 018497          214 FDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGF  292 (355)
Q Consensus       214 fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~  292 (355)
                      ||+.+++|+.+ +++ ..+   ....+++.+|+||++++.++. ...-.|=..+  .....|+.+..+....  ...-.+
T Consensus       449 YDP~t~~W~~~~~M~-~~R---~~~g~a~~~~~iYvvGG~~~~-~~~~~VE~yd--p~~~~W~~v~~m~~~r--s~~g~~  519 (571)
T KOG4441|consen  449 YDPETNTWTLIAPMN-TRR---SGFGVAVLNGKIYVVGGFDGT-SALSSVERYD--PETNQWTMVAPMTSPR--SAVGVV  519 (571)
T ss_pred             EcCCCCceeecCCcc-ccc---ccceEEEECCEEEEECCccCC-CccceEEEEc--CCCCceeEcccCcccc--ccccEE
Confidence            99999999998 777 555   456699999999999998751 1111122222  2357899996666554  222223


Q ss_pred             eeCCcEEEEEEeeCCce----EEEEEeCCCCeEEEEEE
Q 018497          293 TERGKIFIRGECRHGGY----GLLVYNPHSDTFKCIGV  326 (355)
Q Consensus       293 ~~~g~i~~~~~~~~~~~----~l~~yd~~t~~~~~v~~  326 (355)
                      ..++++|++  .+.++.    .+-.||+++++|+...-
T Consensus       520 ~~~~~ly~v--GG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  520 VLGGKLYAV--GGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             EECCEEEEE--ecccCccccceeEEcCCCCCceeeCCC
Confidence            446789998  433332    79999999999998743

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.36  E-value=7.4e-11  Score=114.59  Aligned_cols=188  Identities=17%  Similarity=0.254  Sum_probs=134.0

Q ss_pred             ceEEEEcCCcccEEecCCCCCCCce----------eEE-EEecCCCCCCcEEEE--EEcCCCceeEeccCCCceeeeccc
Q 018497          115 SLIYLWNPLIKKYMTLPRPSLNPRY----------LGF-GVNSVSGHLDDFKVV--YSLRSNSWKNIAYGFPRSIEINRS  181 (355)
Q Consensus       115 ~~~~V~NP~T~~~~~LP~~~~~~~~----------~~~-g~d~~~~~~~~ykvv--yss~t~~W~~~~~~~p~~~~~~~~  181 (355)
                      ..+..+||.+++|..+.+++..+..          +.. |+|..   ....+-+  ||+.+++|..++ .|+....... 
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~---~~~l~~ve~YD~~~~~W~~~a-~M~~~R~~~~-  375 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSG---SDRLSSVERYDPRTNQWTPVA-PMNTKRSDFG-  375 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCC---CcccceEEEecCCCCceeccC-CccCccccce-
Confidence            4566889999999999999876532          222 23411   1122222  999999999988 7776655443 


Q ss_pred             cccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEE
Q 018497          182 HINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSY  260 (355)
Q Consensus       182 ~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l  260 (355)
                          .+.++|.+|.+++..   +......+..||+.+++|+.+ +++ ..+   .....++.+|+||++++.++.   .-
T Consensus       376 ----v~~l~g~iYavGG~d---g~~~l~svE~YDp~~~~W~~va~m~-~~r---~~~gv~~~~g~iYi~GG~~~~---~~  441 (571)
T KOG4441|consen  376 ----VAVLDGKLYAVGGFD---GEKSLNSVECYDPVTNKWTPVAPML-TRR---SGHGVAVLGGKLYIIGGGDGS---SN  441 (571)
T ss_pred             ----eEEECCEEEEEeccc---cccccccEEEecCCCCcccccCCCC-cce---eeeEEEEECCEEEEEcCcCCC---cc
Confidence                789999999999876   345566899999999999998 677 543   567889999999999997662   11


Q ss_pred             EEEEeccC-CCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCc----eEEEEEeCCCCeEEEEE
Q 018497          261 ELWVMKEY-GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG----YGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       261 ~iW~l~~~-~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~----~~l~~yd~~t~~~~~v~  325 (355)
                      .+=..+-| .....|+.+..|..... ...++ .-+|.||++  .+.++    ..+-.||+++++|..+.
T Consensus       442 ~l~sve~YDP~t~~W~~~~~M~~~R~-~~g~a-~~~~~iYvv--GG~~~~~~~~~VE~ydp~~~~W~~v~  507 (571)
T KOG4441|consen  442 CLNSVECYDPETNTWTLIAPMNTRRS-GFGVA-VLNGKIYVV--GGFDGTSALSSVERYDPETNQWTMVA  507 (571)
T ss_pred             ccceEEEEcCCCCceeecCCcccccc-cceEE-EECCEEEEE--CCccCCCccceEEEEcCCCCceeEcc
Confidence            22233333 23578999999887763 22233 346789999  42222    26889999999999995

>PHA02713 hypothetical protein; Provisional

Probab=99.35  E-value=1.2e-10  Score=113.53  Aligned_cols=188  Identities=11%  Similarity=0.151  Sum_probs=124.2

Q ss_pred             eEEEEcCCcccEEecCCCCCCCce----------eEEE-EecCCCCCCcEE-EE-EEcCCCceeEeccCCCceeeecccc
Q 018497          116 LIYLWNPLIKKYMTLPRPSLNPRY----------LGFG-VNSVSGHLDDFK-VV-YSLRSNSWKNIAYGFPRSIEINRSH  182 (355)
Q Consensus       116 ~~~V~NP~T~~~~~LP~~~~~~~~----------~~~g-~d~~~~~~~~yk-vv-yss~t~~W~~~~~~~p~~~~~~~~~  182 (355)
                      .+..+||.+++|..+++++..+..          +.+| ++..   ....+ |. ||..++.|..++ .+|.......  
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~---~~~~~~v~~Yd~~~n~W~~~~-~m~~~R~~~~--  346 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFN---NPSLNKVYKINIENKIHVELP-PMIKNRCRFS--  346 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCC---CCccceEEEEECCCCeEeeCC-CCcchhhcee--
Confidence            467889999999999988766422          2222 2211   11112 22 999999999998 7776543322  


Q ss_pred             ccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCc----
Q 018497          183 INSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTF----  257 (355)
Q Consensus       183 ~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~----  257 (355)
                         .+.++|++|.+++..   +......+.+||+.+++|+.+ ++| ..+   .....++++|+|+++++..+...    
T Consensus       347 ---~~~~~g~IYviGG~~---~~~~~~sve~Ydp~~~~W~~~~~mp-~~r---~~~~~~~~~g~IYviGG~~~~~~~~~~  416 (557)
T PHA02713        347 ---LAVIDDTIYAIGGQN---GTNVERTIECYTMGDDKWKMLPDMP-IAL---SSYGMCVLDQYIYIIGGRTEHIDYTSV  416 (557)
T ss_pred             ---EEEECCEEEEECCcC---CCCCCceEEEEECCCCeEEECCCCC-ccc---ccccEEEECCEEEEEeCCCcccccccc
Confidence               789999999998864   122345799999999999998 777 544   34567789999999987643100    


Q ss_pred             -------------cEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCc-----eEEEEEeCCC-
Q 018497          258 -------------RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG-----YGLLVYNPHS-  318 (355)
Q Consensus       258 -------------~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~-----~~l~~yd~~t-  318 (355)
                                   ..-.+...+-  ....|+.+..++...  ..+-++..+|+||+.  ++.++     ..+..||+++ 
T Consensus       417 ~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r--~~~~~~~~~~~IYv~--GG~~~~~~~~~~ve~Ydp~~~  490 (557)
T PHA02713        417 HHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGT--IRPGVVSHKDDIYVV--CDIKDEKNVKTCIFRYNTNTY  490 (557)
T ss_pred             cccccccccccccccceEEEECC--CCCeEeecCCCCccc--ccCcEEEECCEEEEE--eCCCCCCccceeEEEecCCCC
Confidence                         0112333332  346899887776554  223334456899999  42211     2467999999 


Q ss_pred             CeEEEEE
Q 018497          319 DTFKCIG  325 (355)
Q Consensus       319 ~~~~~v~  325 (355)
                      ++|+.+.
T Consensus       491 ~~W~~~~  497 (557)
T PHA02713        491 NGWELIT  497 (557)
T ss_pred             CCeeEcc
Confidence            8999874

>PHA03098 kelch-like protein; Provisional

Probab=99.34  E-value=3.2e-10  Score=110.67  Aligned_cols=190  Identities=13%  Similarity=0.099  Sum_probs=123.4

Q ss_pred             ceEEEEcCCcccEEecCCCCCCCce----------eEEEEecCCCCCCcEE-EE-EEcCCCceeEeccCCCceeeecccc
Q 018497          115 SLIYLWNPLIKKYMTLPRPSLNPRY----------LGFGVNSVSGHLDDFK-VV-YSLRSNSWKNIAYGFPRSIEINRSH  182 (355)
Q Consensus       115 ~~~~V~NP~T~~~~~LP~~~~~~~~----------~~~g~d~~~~~~~~yk-vv-yss~t~~W~~~~~~~p~~~~~~~~~  182 (355)
                      ..++.+||.|++|..+|+++..+..          +.+|=...   ..... +. |+..+++|+..+ .+|.......  
T Consensus       311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~---~~~~~~v~~yd~~~~~W~~~~-~lp~~r~~~~--  384 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYN---SISLNTVESWKPGESKWREEP-PLIFPRYNPC--  384 (534)
T ss_pred             ccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCC---CEecceEEEEcCCCCceeeCC-CcCcCCccce--
Confidence            3688999999999999988755422          22221111   11111 11 999999999988 6775443221  


Q ss_pred             ccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCc--cE
Q 018497          183 INSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTF--RS  259 (355)
Q Consensus       183 ~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~--~~  259 (355)
                         ++.++|.+|.+++..  .+......+..||+.+++|+.+ ++| ..+   .....+..+|+|+++++......  ..
T Consensus       385 ---~~~~~~~iYv~GG~~--~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~  455 (534)
T PHA03098        385 ---VVNVNNLIYVIGGIS--KNDELLKTVECFSLNTNKWSKGSPLP-ISH---YGGCAIYHDGKIYVIGGISYIDNIKVY  455 (534)
T ss_pred             ---EEEECCEEEEECCcC--CCCcccceEEEEeCCCCeeeecCCCC-ccc---cCceEEEECCEEEEECCccCCCCCccc
Confidence               778999999998743  1122346799999999999988 666 444   23456788999999987543110  01


Q ss_pred             EEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCC----ceEEEEEeCCCCeEEEEE
Q 018497          260 YELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG----GYGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       260 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~l~~yd~~t~~~~~v~  325 (355)
                      -.+|..+.  .+..|+.+..++.+.  .....+..+|+||+.  .+..    ...+..||+++++|+.+.
T Consensus       456 ~~v~~yd~--~~~~W~~~~~~~~~r--~~~~~~~~~~~iyv~--GG~~~~~~~~~v~~yd~~~~~W~~~~  519 (534)
T PHA03098        456 NIVESYNP--VTNKWTELSSLNFPR--INASLCIFNNKIYVV--GGDKYEYYINEIEVYDDKTNTWTLFC  519 (534)
T ss_pred             ceEEEecC--CCCceeeCCCCCccc--ccceEEEECCEEEEE--cCCcCCcccceeEEEeCCCCEEEecC
Confidence            22566654  246899876655443  112223346789888  3221    126999999999998874

>PHA02790 Kelch-like protein; Provisional

Probab=99.34  E-value=2.3e-10  Score=109.70  Aligned_cols=188  Identities=12%  Similarity=0.068  Sum_probs=124.4

Q ss_pred             eCceEEEeecC---CCCceEEEEcCCcccEEecCCCCCCCce----------eEEE-EecCCCCCCcEEEE-EEcCCCce
Q 018497          101 CNGVLCFCSNG---SDRSLIYLWNPLIKKYMTLPRPSLNPRY----------LGFG-VNSVSGHLDDFKVV-YSLRSNSW  165 (355)
Q Consensus       101 ~~GLl~l~~~~---~~~~~~~V~NP~T~~~~~LP~~~~~~~~----------~~~g-~d~~~~~~~~ykvv-yss~t~~W  165 (355)
                      .++.|.+.++.   ........+||.+++|..+|+++..+..          +.+| .+.    ...  +- |+..+++|
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~----~~s--ve~ydp~~n~W  343 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN----PTS--VERWFHGDAAW  343 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC----CCc--eEEEECCCCeE
Confidence            45555554431   1224567889999999999998766532          2222 111    111  12 99999999


Q ss_pred             eEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECC
Q 018497          166 KNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDG  244 (355)
Q Consensus       166 ~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G  244 (355)
                      ..++ .+|.......     ++.++|.+|.+++..     .....+.+||+.+++|+.+ ++| ..+   .....++.+|
T Consensus       344 ~~~~-~l~~~r~~~~-----~~~~~g~IYviGG~~-----~~~~~ve~ydp~~~~W~~~~~m~-~~r---~~~~~~~~~~  408 (480)
T PHA02790        344 VNMP-SLLKPRCNPA-----VASINNVIYVIGGHS-----ETDTTTEYLLPNHDQWQFGPSTY-YPH---YKSCALVFGR  408 (480)
T ss_pred             EECC-CCCCCCcccE-----EEEECCEEEEecCcC-----CCCccEEEEeCCCCEEEeCCCCC-Ccc---ccceEEEECC
Confidence            9998 7776554322     789999999998754     1225688999999999998 555 433   3456778999


Q ss_pred             eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCC--c--eEEEEEeCCCCe
Q 018497          245 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG--G--YGLLVYNPHSDT  320 (355)
Q Consensus       245 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~--~--~~l~~yd~~t~~  320 (355)
                      +|+++++.       .+++-.    ....|+....++.+.  ...-++.-+|+||+.  ++.+  .  ..+..||+++++
T Consensus       409 ~IYv~GG~-------~e~ydp----~~~~W~~~~~m~~~r--~~~~~~v~~~~IYvi--GG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        409 RLFLVGRN-------AEFYCE----SSNTWTLIDDPIYPR--DNPELIIVDNKLLLI--GGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             EEEEECCc-------eEEecC----CCCcEeEcCCCCCCc--cccEEEEECCEEEEE--CCcCCCcccceEEEEECCCCe
Confidence            99999842       223322    246899887776543  222333457799999  4221  1  268999999999


Q ss_pred             EEEE
Q 018497          321 FKCI  324 (355)
Q Consensus       321 ~~~v  324 (355)
                      |...
T Consensus       474 W~~~  477 (480)
T PHA02790        474 WNIW  477 (480)
T ss_pred             EEec
Confidence            9753

>PLN02153 epithiospecifier protein

Probab=99.16  E-value=3e-08  Score=91.26  Aligned_cols=214  Identities=12%  Similarity=0.088  Sum_probs=122.5

Q ss_pred             EeeeCceEEEeecCC-----CCceEEEEcCCcccEEecCCCCCC-C----ce---------eEEE-EecCCCCCCcEEEE
Q 018497           98 VGSCNGVLCFCSNGS-----DRSLIYLWNPLIKKYMTLPRPSLN-P----RY---------LGFG-VNSVSGHLDDFKVV  157 (355)
Q Consensus        98 ~~s~~GLl~l~~~~~-----~~~~~~V~NP~T~~~~~LP~~~~~-~----~~---------~~~g-~d~~~~~~~~ykvv  157 (355)
                      ++..++.|.+..+..     ....++++||.+++|..+|+.... +    ..         +.|| ++..    ..+.-+
T Consensus        28 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~----~~~~~v  103 (341)
T PLN02153         28 IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK----REFSDF  103 (341)
T ss_pred             EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC----CccCcE
Confidence            344566665554311     124689999999999998865321 1    11         2232 2211    112212


Q ss_pred             --EEcCCCceeEeccCC-----CceeeeccccccceeEeCceEEEEEeeecc-C-C-CCCCcEEEEEEcCCceeeEecCC
Q 018497          158 --YSLRSNSWKNIAYGF-----PRSIEINRSHINSSVFLNGSVHWCARFSCY-H-D-NSCPWLIVSFDFAKEIFQTVMMP  227 (355)
Q Consensus       158 --yss~t~~W~~~~~~~-----p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~-~-~-~~~~~~Il~fD~~~~~~~~i~lP  227 (355)
                        ||.++++|+.++ .+     |...... .    .+..+|++|.+++.... . . ......+.+||+.+++|+.++.+
T Consensus       104 ~~yd~~t~~W~~~~-~~~~~~~p~~R~~~-~----~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~  177 (341)
T PLN02153        104 YSYDTVKNEWTFLT-KLDEEGGPEARTFH-S----MASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDP  177 (341)
T ss_pred             EEEECCCCEEEEec-cCCCCCCCCCceee-E----EEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCC
Confidence              999999999887 54     3322222 1    67899999999875410 0 0 01124689999999999987432


Q ss_pred             CCC-CCCCCceEEEEECCeEEEEEecCCC------C-ccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEeEEEeeCCcE
Q 018497          228 YDL-STDDADKYLNVFDGYLCVFATIPNN------T-FRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKI  298 (355)
Q Consensus       228 ~~~-~~~~~~~~L~~~~G~L~~v~~~~~~------~-~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i  298 (355)
                       .. ........++..+|+|++++.....      . ...-.++.++-  ...+|+++......+. .....++.-++.|
T Consensus       178 -~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~~P~~r~~~~~~~~~~~i  254 (341)
T PLN02153        178 -GENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGAKPSARSVFAHAVVGKYI  254 (341)
T ss_pred             -CCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc--CCCcEEeccccCCCCCCcceeeeEEECCEE
Confidence             21 1112334567899999998764310      0 01123555553  2467999765421111 1112223345688


Q ss_pred             EEEEEeeCC-------------ceEEEEEeCCCCeEEEEEE
Q 018497          299 FIRGECRHG-------------GYGLLVYNPHSDTFKCIGV  326 (355)
Q Consensus       299 ~~~~~~~~~-------------~~~l~~yd~~t~~~~~v~~  326 (355)
                      |+.  ....             .+.++.||+++++|+.+..
T Consensus       255 yv~--GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~  293 (341)
T PLN02153        255 IIF--GGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE  293 (341)
T ss_pred             EEE--CcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence            888  3110             0158999999999998854

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.13  E-value=2.3e-08  Score=92.18  Aligned_cols=216  Identities=16%  Similarity=0.182  Sum_probs=127.1

Q ss_pred             EeeeCceEEEeecCCCCceEEEEc--CCcccEEecCCCCC-CCce----------eEEE-EecCCCCCCc---EEEE--E
Q 018497           98 VGSCNGVLCFCSNGSDRSLIYLWN--PLIKKYMTLPRPSL-NPRY----------LGFG-VNSVSGHLDD---FKVV--Y  158 (355)
Q Consensus        98 ~~s~~GLl~l~~~~~~~~~~~V~N--P~T~~~~~LP~~~~-~~~~----------~~~g-~d~~~~~~~~---ykvv--y  158 (355)
                      .+..++-|.+..+. ....+++.+  |.+++|..+|+++. .+..          +.+| ++.... ...   ..-+  |
T Consensus        13 ~~~~~~~vyv~GG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~-~~~~~~~~~v~~Y   90 (346)
T TIGR03547        13 GAIIGDKVYVGLGS-AGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANS-EGSPQVFDDVYRY   90 (346)
T ss_pred             EEEECCEEEEEccc-cCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCC-CCcceecccEEEE
Confidence            33556666555431 235677777  47889999998873 3321          3333 221100 011   1112  9


Q ss_pred             EcCCCceeEeccCCCceeeecccccccee-EeCceEEEEEeeeccC-----------CC--------------------C
Q 018497          159 SLRSNSWKNIAYGFPRSIEINRSHINSSV-FLNGSVHWCARFSCYH-----------DN--------------------S  206 (355)
Q Consensus       159 ss~t~~W~~~~~~~p~~~~~~~~~~~~~v-~~~G~lyw~~~~~~~~-----------~~--------------------~  206 (355)
                      |..+++|+.++..+|...... .    ++ .++|+||.+++.....           +.                    .
T Consensus        91 d~~~~~W~~~~~~~p~~~~~~-~----~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (346)
T TIGR03547        91 DPKKNSWQKLDTRSPVGLLGA-S----GFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF  165 (346)
T ss_pred             ECCCCEEecCCCCCCCcccce-e----EEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence            999999999872233322211 1    33 6899999998753100           00                    0


Q ss_pred             CCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 018497          207 CPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR  285 (355)
Q Consensus       207 ~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~  285 (355)
                      ....+.+||+.+++|+.+ ++| ....  ....++..+|+|+++++.........++|..+-..++..|.++..++....
T Consensus       166 ~~~~v~~YDp~t~~W~~~~~~p-~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~  242 (346)
T TIGR03547       166 WNKNVLSYDPSTNQWRNLGENP-FLGT--AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKS  242 (346)
T ss_pred             ccceEEEEECCCCceeECccCC-CCcC--CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCC
Confidence            125799999999999998 666 3211  345677889999999886432223345666542223468998887764321


Q ss_pred             -----eeEeEEEeeCCcEEEEEEeeCC---------------------ceEEEEEeCCCCeEEEEE
Q 018497          286 -----IWWPLGFTERGKIFIRGECRHG---------------------GYGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       286 -----~~~~~~~~~~g~i~~~~~~~~~---------------------~~~l~~yd~~t~~~~~v~  325 (355)
                           .....++..+|+||+.|  +..                     ...+.+||+++++|+.+.
T Consensus       243 ~~~~~~~~~~a~~~~~~Iyv~G--G~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~  306 (346)
T TIGR03547       243 SSQEGLAGAFAGISNGVLLVAG--GANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG  306 (346)
T ss_pred             CccccccEEeeeEECCEEEEee--cCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence                 01122334578999983  111                     014678999999998874

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=99.12  E-value=5.9e-08  Score=92.94  Aligned_cols=192  Identities=13%  Similarity=0.139  Sum_probs=118.3

Q ss_pred             ceEEEEcCCcccEEecCCCC---CC-C-ce---------eEEE-EecCCCCCCcEEEE--EEcCCCceeEeccCC---Cc
Q 018497          115 SLIYLWNPLIKKYMTLPRPS---LN-P-RY---------LGFG-VNSVSGHLDDFKVV--YSLRSNSWKNIAYGF---PR  174 (355)
Q Consensus       115 ~~~~V~NP~T~~~~~LP~~~---~~-~-~~---------~~~g-~d~~~~~~~~ykvv--yss~t~~W~~~~~~~---p~  174 (355)
                      ..++++||.+++|..+|+..   .. + ..         +.|| ++.    ...+.-+  ||+.+++|+.++ .+   |.
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~----~~~~ndv~~yD~~t~~W~~l~-~~~~~P~  267 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA----SRQYNGFYSFDTTTNEWKLLT-PVEEGPT  267 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCC----CCCCccEEEEECCCCEEEEcC-cCCCCCC
Confidence            35889999999999887532   11 1 11         2222 221    1112212  999999999987 44   32


Q ss_pred             eeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCC-CCCCceEEEEECCeEEEEEecC
Q 018497          175 SIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVFDGYLCVFATIP  253 (355)
Q Consensus       175 ~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~-~~~~~~~L~~~~G~L~~v~~~~  253 (355)
                      ..... .    .+.+++++|.+++..   .......+.+||+.+++|+.++.| ... .......++..+|+++++....
T Consensus       268 ~R~~h-~----~~~~~~~iYv~GG~~---~~~~~~~~~~yd~~t~~W~~~~~~-~~~~~~R~~~~~~~~~gkiyviGG~~  338 (470)
T PLN02193        268 PRSFH-S----MAADEENVYVFGGVS---ATARLKTLDSYNIVDKKWFHCSTP-GDSFSIRGGAGLEVVQGKVWVVYGFN  338 (470)
T ss_pred             Cccce-E----EEEECCEEEEECCCC---CCCCcceEEEEECCCCEEEeCCCC-CCCCCCCCCcEEEEECCcEEEEECCC
Confidence            22222 1    677899999998754   122335688999999999988654 322 1123456778899999998765


Q ss_pred             CCCccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEeEEEeeCCcEEEEEEeeCC----------c---eEEEEEeCCCC
Q 018497          254 NNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRHG----------G---YGLLVYNPHSD  319 (355)
Q Consensus       254 ~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~----------~---~~l~~yd~~t~  319 (355)
                      ..  ..-.+|+++-.  +.+|+++..+...+. .....++..+++||+.  ....          +   ..++.||++|+
T Consensus       339 g~--~~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~~~~~ndv~~~D~~t~  412 (470)
T PLN02193        339 GC--EVDDVHYYDPV--QDKWTQVETFGVRPSERSVFASAAVGKHIVIF--GGEIAMDPLAHVGPGQLTDGTFALDTETL  412 (470)
T ss_pred             CC--ccCceEEEECC--CCEEEEeccCCCCCCCcceeEEEEECCEEEEE--CCccCCccccccCccceeccEEEEEcCcC
Confidence            32  23457777642  467999876521111 1222233445688887  3111          0   14899999999


Q ss_pred             eEEEEEE
Q 018497          320 TFKCIGV  326 (355)
Q Consensus       320 ~~~~v~~  326 (355)
                      +|+.+..
T Consensus       413 ~W~~~~~  419 (470)
T PLN02193        413 QWERLDK  419 (470)
T ss_pred             EEEEccc
Confidence            9998864

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.12  E-value=3e-08  Score=90.48  Aligned_cols=188  Identities=15%  Similarity=0.175  Sum_probs=116.0

Q ss_pred             eEEEE-cCCcc-cEEecCCCCCCCce----------eEEE-EecCCCCCCcEEEE--EEcCCCce----eEeccCCCcee
Q 018497          116 LIYLW-NPLIK-KYMTLPRPSLNPRY----------LGFG-VNSVSGHLDDFKVV--YSLRSNSW----KNIAYGFPRSI  176 (355)
Q Consensus       116 ~~~V~-NP~T~-~~~~LP~~~~~~~~----------~~~g-~d~~~~~~~~ykvv--yss~t~~W----~~~~~~~p~~~  176 (355)
                      .+++. +|..+ +|..+++++..+.+          +.+| ++.    ...++-+  |+..+++|    +.++ .+|...
T Consensus        40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~----~~~~~~v~~~d~~~~~w~~~~~~~~-~lp~~~  114 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNS----SERFSSVYRITLDESKEELICETIG-NLPFTF  114 (323)
T ss_pred             eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCC----CCCceeEEEEEEcCCceeeeeeEcC-CCCcCc
Confidence            45555 45433 79998877765432          2222 221    1122223  89999888    5666 666554


Q ss_pred             eeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCC
Q 018497          177 EINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNN  255 (355)
Q Consensus       177 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~  255 (355)
                      ....     +++++|++|.+++..   +......+.+||+.+++|+.+ ++| ...  ......+..+|+|+++++....
T Consensus       115 ~~~~-----~~~~~~~iYv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~~p-~~~--r~~~~~~~~~~~iYv~GG~~~~  183 (323)
T TIGR03548       115 ENGS-----ACYKDGTLYVGGGNR---NGKPSNKSYLFNLETQEWFELPDFP-GEP--RVQPVCVKLQNELYVFGGGSNI  183 (323)
T ss_pred             cCce-----EEEECCEEEEEeCcC---CCccCceEEEEcCCCCCeeECCCCC-CCC--CCcceEEEECCEEEEEcCCCCc
Confidence            3222     788999999998753   122346799999999999998 477 422  1334567889999999986542


Q ss_pred             CccEEEEEEeccCCCCCCeEEEEEecCCCc---e-eEeEEEeeCCcEEEEEEeeCC------------------------
Q 018497          256 TFRSYELWVMKEYGLTESWTKLYTIEKPQR---I-WWPLGFTERGKIFIRGECRHG------------------------  307 (355)
Q Consensus       256 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~---~-~~~~~~~~~g~i~~~~~~~~~------------------------  307 (355)
                        ...+++..+-  .+..|+++..+.....   . .....+..++.||+.  ...+                        
T Consensus       184 --~~~~~~~yd~--~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (323)
T TIGR03548       184 --AYTDGYKYSP--KKNQWQKVADPTTDSEPISLLGAASIKINESLLLCI--GGFNKDVYNDAVIDLATMKDESLKGYKK  257 (323)
T ss_pred             --cccceEEEec--CCCeeEECCCCCCCCCceeccceeEEEECCCEEEEE--CCcCHHHHHHHHhhhhhccchhhhhhHH
Confidence              2234566553  2467998765532111   1 111222345688888  3221                        


Q ss_pred             ------------ceEEEEEeCCCCeEEEEE
Q 018497          308 ------------GYGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       308 ------------~~~l~~yd~~t~~~~~v~  325 (355)
                                  .+.+..||+++++|..+.
T Consensus       258 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  287 (323)
T TIGR03548       258 EYFLKPPEWYNWNRKILIYNVRTGKWKSIG  287 (323)
T ss_pred             HHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence                        125999999999999885

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.04  E-value=1.1e-07  Score=88.62  Aligned_cols=216  Identities=14%  Similarity=0.144  Sum_probs=125.7

Q ss_pred             EeeeCceEEEeecCCCCceEEEEcCC--cccEEecCCCCC-CCce----------eEEE-EecCCCCCCcEEE----E-E
Q 018497           98 VGSCNGVLCFCSNGSDRSLIYLWNPL--IKKYMTLPRPSL-NPRY----------LGFG-VNSVSGHLDDFKV----V-Y  158 (355)
Q Consensus        98 ~~s~~GLl~l~~~~~~~~~~~V~NP~--T~~~~~LP~~~~-~~~~----------~~~g-~d~~~~~~~~ykv----v-y  158 (355)
                      .+..++-|.+..+ .....+++.++.  +++|..+|+++. .+..          +.+| ++... .....+.    . |
T Consensus        34 ~~~~~~~iyv~gG-~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~-~~~~~~~~~~v~~Y  111 (376)
T PRK14131         34 GAIDNNTVYVGLG-SAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTN-SEGSPQVFDDVYKY  111 (376)
T ss_pred             EEEECCEEEEEeC-CCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCC-CCCceeEcccEEEE
Confidence            4556777665442 133457777764  588999998753 2211          3333 22100 0111122    2 9


Q ss_pred             EcCCCceeEeccCCCceeeeccccccceeE-eCceEEEEEeeecc-CCC------------------------------C
Q 018497          159 SLRSNSWKNIAYGFPRSIEINRSHINSSVF-LNGSVHWCARFSCY-HDN------------------------------S  206 (355)
Q Consensus       159 ss~t~~W~~~~~~~p~~~~~~~~~~~~~v~-~~G~lyw~~~~~~~-~~~------------------------------~  206 (355)
                      |..+++|+.++...|...... .    .+. .+|+||.+++.... ...                              .
T Consensus       112 D~~~n~W~~~~~~~p~~~~~~-~----~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (376)
T PRK14131        112 DPKTNSWQKLDTRSPVGLAGH-V----AVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYF  186 (376)
T ss_pred             eCCCCEEEeCCCCCCCcccce-E----EEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcC
Confidence            999999999872223332211 1    344 79999999875310 000                              0


Q ss_pred             CCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 018497          207 CPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR  285 (355)
Q Consensus       207 ~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~  285 (355)
                      ....+.+||+.+++|+.+ ++|....   ....++..+++|+++++.........++|..+-...+..|.++..++....
T Consensus       187 ~~~~v~~YD~~t~~W~~~~~~p~~~~---~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~  263 (376)
T PRK14131        187 FNKEVLSYDPSTNQWKNAGESPFLGT---AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPG  263 (376)
T ss_pred             cCceEEEEECCCCeeeECCcCCCCCC---CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCc
Confidence            125699999999999998 5662122   234567889999999985432223556776653233468999887764321


Q ss_pred             ------eeEeEEEeeCCcEEEEEEeeCC-------------------c--eEEEEEeCCCCeEEEEE
Q 018497          286 ------IWWPLGFTERGKIFIRGECRHG-------------------G--YGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       286 ------~~~~~~~~~~g~i~~~~~~~~~-------------------~--~~l~~yd~~t~~~~~v~  325 (355)
                            .....++..+|+||+.|  +.+                   .  ..+-.||+++++|+.+.
T Consensus       264 ~~~~~~~~~~~a~~~~~~iyv~G--G~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~  328 (376)
T PRK14131        264 GSSQEGVAGAFAGYSNGVLLVAG--GANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG  328 (376)
T ss_pred             CCcCCccceEeceeECCEEEEee--ccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence                  11122334567899883  111                   0  02457999999998774

>PHA03098 kelch-like protein; Provisional

Probab=99.02  E-value=1.4e-08  Score=99.12  Aligned_cols=188  Identities=12%  Similarity=0.089  Sum_probs=120.3

Q ss_pred             eEEEEcCCcccEEecCCCCCCCce---------eEEE-EecCCCCCCcE-EEE-EEcCCCceeEeccCCCceeeeccccc
Q 018497          116 LIYLWNPLIKKYMTLPRPSLNPRY---------LGFG-VNSVSGHLDDF-KVV-YSLRSNSWKNIAYGFPRSIEINRSHI  183 (355)
Q Consensus       116 ~~~V~NP~T~~~~~LP~~~~~~~~---------~~~g-~d~~~~~~~~y-kvv-yss~t~~W~~~~~~~p~~~~~~~~~~  183 (355)
                      .+.-+|+.+++|..++..+....+         +.+| ++..   .... .+. |+..+++|..++ .+|.......   
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~-~~~~~R~~~~---  337 (534)
T PHA03098        265 NYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKN---NLSVNSVVSYDTKTKSWNKVP-ELIYPRKNPG---  337 (534)
T ss_pred             eeeecchhhhhcccccCccccccceEEEECCEEEEECCCcCC---CCeeccEEEEeCCCCeeeECC-CCCcccccce---
Confidence            345578899999988766533221         2222 2221   1111 233 999999999988 6765443222   


Q ss_pred             cceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEE
Q 018497          184 NSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYEL  262 (355)
Q Consensus       184 ~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~i  262 (355)
                        .+.++|.+|.+++..   +......+..||+.+++|+.+ ++| ..+   .....+..+|+|+++++........-.+
T Consensus       338 --~~~~~~~lyv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~lp-~~r---~~~~~~~~~~~iYv~GG~~~~~~~~~~v  408 (534)
T PHA03098        338 --VTVFNNRIYVIGGIY---NSISLNTVESWKPGESKWREEPPLI-FPR---YNPCVVNVNNLIYVIGGISKNDELLKTV  408 (534)
T ss_pred             --EEEECCEEEEEeCCC---CCEecceEEEEcCCCCceeeCCCcC-cCC---ccceEEEECCEEEEECCcCCCCcccceE
Confidence              788999999998754   122345688999999999988 677 444   3456678899999998854311112234


Q ss_pred             EEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCC-------ceEEEEEeCCCCeEEEEE
Q 018497          263 WVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG-------GYGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       263 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~-------~~~l~~yd~~t~~~~~v~  325 (355)
                      +..+-  .+.+|.....++...  ....++..++.||+.  .+..       ...+..||+++++|+.+.
T Consensus       409 ~~yd~--~t~~W~~~~~~p~~r--~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~v~~yd~~~~~W~~~~  472 (534)
T PHA03098        409 ECFSL--NTNKWSKGSPLPISH--YGGCAIYHDGKIYVI--GGISYIDNIKVYNIVESYNPVTNKWTELS  472 (534)
T ss_pred             EEEeC--CCCeeeecCCCCccc--cCceEEEECCEEEEE--CCccCCCCCcccceEEEecCCCCceeeCC
Confidence            55543  236799877665443  222334456789888  3111       114899999999999884

>PHA02790 Kelch-like protein; Provisional

Probab=99.02  E-value=2.9e-08  Score=95.37  Aligned_cols=155  Identities=6%  Similarity=-0.065  Sum_probs=105.3

Q ss_pred             eeeccCCcccccCCCCCCCCCCCCeEEEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCce----------e
Q 018497           71 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRY----------L  140 (355)
Q Consensus        71 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~----------~  140 (355)
                      ..|++..+.|..++....+   ......++.+|-|.+.++.........++|.+++|..+|+++..+..          +
T Consensus       290 ~~Ydp~~~~W~~~~~m~~~---r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY  366 (480)
T PHA02790        290 IAVNYISNNWIPIPPMNSP---RLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY  366 (480)
T ss_pred             EEEECCCCEEEECCCCCch---hhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE
Confidence            3577777777766532222   12233456788887666422234577889999999999998866422          3


Q ss_pred             EEE-EecCCCCCCcEEEE-EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCC
Q 018497          141 GFG-VNSVSGHLDDFKVV-YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAK  218 (355)
Q Consensus       141 ~~g-~d~~~~~~~~ykvv-yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~  218 (355)
                      .+| .+..   .  ..+- ||.++++|+.++ .++.......     .+.++|++|.+++.           ..+||+++
T Consensus       367 viGG~~~~---~--~~ve~ydp~~~~W~~~~-~m~~~r~~~~-----~~~~~~~IYv~GG~-----------~e~ydp~~  424 (480)
T PHA02790        367 VIGGHSET---D--TTTEYLLPNHDQWQFGP-STYYPHYKSC-----ALVFGRRLFLVGRN-----------AEFYCESS  424 (480)
T ss_pred             EecCcCCC---C--ccEEEEeCCCCEEEeCC-CCCCccccce-----EEEECCEEEEECCc-----------eEEecCCC
Confidence            332 2211   1  1222 999999999998 6765544321     77899999998752           56799999


Q ss_pred             ceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCC
Q 018497          219 EIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPN  254 (355)
Q Consensus       219 ~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~  254 (355)
                      ++|+.+ ++| ..+   ....+++.+|+|+++++...
T Consensus       425 ~~W~~~~~m~-~~r---~~~~~~v~~~~IYviGG~~~  457 (480)
T PHA02790        425 NTWTLIDDPI-YPR---DNPELIIVDNKLLLIGGFYR  457 (480)
T ss_pred             CcEeEcCCCC-CCc---cccEEEEECCEEEEECCcCC
Confidence            999998 566 433   45678899999999998653

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.92  E-value=8.9e-10  Score=69.84  Aligned_cols=41  Identities=27%  Similarity=0.702  Sum_probs=35.6

Q ss_pred             CCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCChHHH
Q 018497            5 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFV   45 (355)
Q Consensus         5 ~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~   45 (355)
                      +..||+|++.+||+.||++++.+++.|||+|+.++.++.+-
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW   41 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW   41 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence            46899999999999999999999999999999999887543

>PLN02153 epithiospecifier protein

Probab=98.89  E-value=8.9e-07  Score=81.47  Aligned_cols=234  Identities=12%  Similarity=0.128  Sum_probs=127.4

Q ss_pred             eeeccCCcccccCCCCCCCCCCC-CeEEEeeeCceEEEeecC---CCCceEEEEcCCcccEEecCCC-----CCCCce--
Q 018497           71 GFYSTKCKEFEDLCDPPFRTQLA-DLDVVGSCNGVLCFCSNG---SDRSLIYLWNPLIKKYMTLPRP-----SLNPRY--  139 (355)
Q Consensus        71 ~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~s~~GLl~l~~~~---~~~~~~~V~NP~T~~~~~LP~~-----~~~~~~--  139 (355)
                      ..|+.....|..++.....+... ....+++.+|.|.+..+.   .....+.++||.|++|..++++     +..+..  
T Consensus        53 ~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~  132 (341)
T PLN02153         53 YVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHS  132 (341)
T ss_pred             EEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeE
Confidence            46777777777654221111111 123345556666555431   1224688999999999998765     222211  


Q ss_pred             --------eEEE-EecCCC-C-CCcEE-EE-EEcCCCceeEeccCCCcee--eeccccccceeEeCceEEEEEeeecc--
Q 018497          140 --------LGFG-VNSVSG-H-LDDFK-VV-YSLRSNSWKNIAYGFPRSI--EINRSHINSSVFLNGSVHWCARFSCY--  202 (355)
Q Consensus       140 --------~~~g-~d~~~~-~-~~~yk-vv-yss~t~~W~~~~~~~p~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~--  202 (355)
                              +.+| ++.... . ...+. |. ||.++++|+.++ .+....  .....    .+.++|++|.+.+....  
T Consensus       133 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~-~~~~~~~~r~~~~----~~~~~~~iyv~GG~~~~~~  207 (341)
T PLN02153        133 MASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP-DPGENFEKRGGAG----FAVVQGKIWVVYGFATSIL  207 (341)
T ss_pred             EEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC-CCCCCCCCCCcce----EEEECCeEEEEeccccccc
Confidence                    2332 222100 0 01122 22 999999999887 432111  11111    57899999998654210  


Q ss_pred             ---CCCCCCcEEEEEEcCCceeeEec----CCCCCCCCCCceEEEEECCeEEEEEecCCC--------CccEEEEEEecc
Q 018497          203 ---HDNSCPWLIVSFDFAKEIFQTVM----MPYDLSTDDADKYLNVFDGYLCVFATIPNN--------TFRSYELWVMKE  267 (355)
Q Consensus       203 ---~~~~~~~~Il~fD~~~~~~~~i~----lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~--------~~~~l~iW~l~~  267 (355)
                         ........+.+||+.+++|+.++    +| ..+   .....+..+++|+++++....        ....-++|.++-
T Consensus       208 ~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P-~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~  283 (341)
T PLN02153        208 PGGKSDYESNAVQFFDPASGKWTEVETTGAKP-SAR---SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT  283 (341)
T ss_pred             cCCccceecCceEEEEcCCCcEEeccccCCCC-CCc---ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEc
Confidence               00112356999999999999884    35 333   334567889999999985310        001126888885


Q ss_pred             CCCCCCeEEEEEecCCCc---e--eEeEEEeeCCcEEEEEEeeC-Cc----eEEEEEeCC
Q 018497          268 YGLTESWTKLYTIEKPQR---I--WWPLGFTERGKIFIRGECRH-GG----YGLLVYNPH  317 (355)
Q Consensus       268 ~~~~~~W~~~~~i~~~~~---~--~~~~~~~~~g~i~~~~~~~~-~~----~~l~~yd~~  317 (355)
                      .  +..|+++.......+   .  .....+..+++||+.  ... +.    .+++.|+..
T Consensus       284 ~--~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~--gG~~~~~~~~~~~~~~~~~  339 (341)
T PLN02153        284 E--TLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMH--GGKLPTNERTDDLYFYAVN  339 (341)
T ss_pred             C--ccEEEeccCCCCCCCCCccccccccccCCcceEEEE--cCcCCCCccccceEEEecc
Confidence            3  468998764322211   1  122333344578877  311 11    157777654

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.82  E-value=6.9e-06  Score=76.61  Aligned_cols=156  Identities=13%  Similarity=0.156  Sum_probs=92.6

Q ss_pred             EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCC--CCCcEEEEEEcCCceeeEe-cCCCCCCCC-
Q 018497          158 YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDN--SCPWLIVSFDFAKEIFQTV-MMPYDLSTD-  233 (355)
Q Consensus       158 yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~--~~~~~Il~fD~~~~~~~~i-~lP~~~~~~-  233 (355)
                      ||.++++|+.++ .+|........    .+.++++||.+++..  ...  ........||+++++|..+ ++| ..... 
T Consensus       194 YD~~t~~W~~~~-~~p~~~~~~~a----~v~~~~~iYv~GG~~--~~~~~~~~~~~~~~~~~~~~W~~~~~~p-~~~~~~  265 (376)
T PRK14131        194 YDPSTNQWKNAG-ESPFLGTAGSA----VVIKGNKLWLINGEI--KPGLRTDAVKQGKFTGNNLKWQKLPDLP-PAPGGS  265 (376)
T ss_pred             EECCCCeeeECC-cCCCCCCCcce----EEEECCEEEEEeeeE--CCCcCChhheEEEecCCCcceeecCCCC-CCCcCC
Confidence            999999999988 67753322222    678899999998764  111  1223345667899999988 677 43311 


Q ss_pred             ---C-CceEEEEECCeEEEEEecCCCCc------cE-------EEEEEeccC-CCCCCeEEEEEecCCCceeEeEEEeeC
Q 018497          234 ---D-ADKYLNVFDGYLCVFATIPNNTF------RS-------YELWVMKEY-GLTESWTKLYTIEKPQRIWWPLGFTER  295 (355)
Q Consensus       234 ---~-~~~~L~~~~G~L~~v~~~~~~~~------~~-------l~iW~l~~~-~~~~~W~~~~~i~~~~~~~~~~~~~~~  295 (355)
                         . .....+..+|+|+++++......      ..       -.+|..+-| .....|+....++....  ...++.-+
T Consensus       266 ~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~--~~~av~~~  343 (376)
T PRK14131        266 SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA--YGVSVSWN  343 (376)
T ss_pred             cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc--ceEEEEeC
Confidence               1 11235678999999987542100      00       012333322 12367998877765432  22344456


Q ss_pred             CcEEEEEEeeCCc---eEEEEEeCCCCeEEE
Q 018497          296 GKIFIRGECRHGG---YGLLVYNPHSDTFKC  323 (355)
Q Consensus       296 g~i~~~~~~~~~~---~~l~~yd~~t~~~~~  323 (355)
                      |+||+.|-....+   .++..|+++++++..
T Consensus       344 ~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~  374 (376)
T PRK14131        344 NGVLLIGGETAGGKAVSDVTLLSWDGKKLTV  374 (376)
T ss_pred             CEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence            7899983110111   168888888877653

>PLN02193 nitrile-specifier protein

Probab=98.80  E-value=9.5e-07  Score=84.69  Aligned_cols=153  Identities=13%  Similarity=0.126  Sum_probs=94.0

Q ss_pred             EEcCCCceeEecc--CCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cC---CCCCC
Q 018497          158 YSLRSNSWKNIAY--GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MM---PYDLS  231 (355)
Q Consensus       158 yss~t~~W~~~~~--~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~l---P~~~~  231 (355)
                      ||.++++|+.++.  ..|....... .   .+.++++||.+++..   .......+.+||+.+++|+.+ ++   | ..+
T Consensus       198 yD~~~~~W~~~~~~g~~P~~~~~~~-~---~v~~~~~lYvfGG~~---~~~~~ndv~~yD~~t~~W~~l~~~~~~P-~~R  269 (470)
T PLN02193        198 FDLETRTWSISPATGDVPHLSCLGV-R---MVSIGSTLYVFGGRD---ASRQYNGFYSFDTTTNEWKLLTPVEEGP-TPR  269 (470)
T ss_pred             EECCCCEEEeCCCCCCCCCCcccce-E---EEEECCEEEEECCCC---CCCCCccEEEEECCCCEEEEcCcCCCCC-CCc
Confidence            9999999997762  1222111111 1   678999999998754   112335689999999999988 44   3 222


Q ss_pred             CCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec-CCCceeEeEEEeeCCcEEEEEEeeCCc--
Q 018497          232 TDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE-KPQRIWWPLGFTERGKIFIRGECRHGG--  308 (355)
Q Consensus       232 ~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~g~i~~~~~~~~~~--  308 (355)
                         ....++..+++|++++..... ...-.++.++-  ...+|+.+.... ..........+..+++||+.  ...++  
T Consensus       270 ---~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~--~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyvi--GG~~g~~  341 (470)
T PLN02193        270 ---SFHSMAADEENVYVFGGVSAT-ARLKTLDSYNI--VDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVV--YGFNGCE  341 (470)
T ss_pred             ---cceEEEEECCEEEEECCCCCC-CCcceEEEEEC--CCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEE--ECCCCCc
Confidence               344567789999999886431 11223555543  236798764321 11111112222346788887  32221  


Q ss_pred             -eEEEEEeCCCCeEEEEEE
Q 018497          309 -YGLLVYNPHSDTFKCIGV  326 (355)
Q Consensus       309 -~~l~~yd~~t~~~~~v~~  326 (355)
                       ..+..||+++++|+.+..
T Consensus       342 ~~dv~~yD~~t~~W~~~~~  360 (470)
T PLN02193        342 VDDVHYYDPVQDKWTQVET  360 (470)
T ss_pred             cCceEEEECCCCEEEEecc
Confidence             269999999999999864

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.72  E-value=1.1e-08  Score=65.17  Aligned_cols=44  Identities=30%  Similarity=0.506  Sum_probs=37.2

Q ss_pred             CCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCChHHHHHH
Q 018497            5 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIH   48 (355)
Q Consensus         5 ~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~~~   48 (355)
                      ..+||+|++.+||.+|+++++++++.|||+|++++.+..+-..+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            45799999999999999999999999999999999998876654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.71  E-value=6e-09  Score=63.92  Aligned_cols=39  Identities=36%  Similarity=0.702  Sum_probs=36.5

Q ss_pred             CCHHHHHHHHhcCCcccchhhcccchhhHhhhCChHHHH
Q 018497            8 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVE   46 (355)
Q Consensus         8 LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~   46 (355)
                      ||+|++.+||.+|+++++.++++|||+|+.++.++.+.+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999887644

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.64  E-value=3e-05  Score=71.51  Aligned_cols=130  Identities=12%  Similarity=0.163  Sum_probs=80.9

Q ss_pred             EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEE--cCCceeeEe-cCCCCCCC--
Q 018497          158 YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFD--FAKEIFQTV-MMPYDLST--  232 (355)
Q Consensus       158 yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD--~~~~~~~~i-~lP~~~~~--  232 (355)
                      ||..+++|+.++ .+|........    .+.++|+||.+++..  ........+..||  +++++|+.+ ++| ....  
T Consensus       173 YDp~t~~W~~~~-~~p~~~r~~~~----~~~~~~~iyv~GG~~--~~~~~~~~~~~y~~~~~~~~W~~~~~m~-~~r~~~  244 (346)
T TIGR03547       173 YDPSTNQWRNLG-ENPFLGTAGSA----IVHKGNKLLLINGEI--KPGLRTAEVKQYLFTGGKLEWNKLPPLP-PPKSSS  244 (346)
T ss_pred             EECCCCceeECc-cCCCCcCCCce----EEEECCEEEEEeeee--CCCccchheEEEEecCCCceeeecCCCC-CCCCCc
Confidence            999999999998 77753222221    678899999998764  1111123344454  577799988 676 4321  


Q ss_pred             -CC-CceEEEEECCeEEEEEecCCCC------------------ccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEE
Q 018497          233 -DD-ADKYLNVFDGYLCVFATIPNNT------------------FRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGF  292 (355)
Q Consensus       233 -~~-~~~~L~~~~G~L~~v~~~~~~~------------------~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~  292 (355)
                       .. .....+..+|+|+++++.....                  ....++|..+    ...|+.+..++...  ....++
T Consensus       245 ~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~----~~~W~~~~~lp~~~--~~~~~~  318 (346)
T TIGR03547       245 QEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD----NGKWSKVGKLPQGL--AYGVSV  318 (346)
T ss_pred             cccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec----CCcccccCCCCCCc--eeeEEE
Confidence             11 1233678899999998753100                  0134555554    35799988777654  222334


Q ss_pred             eeCCcEEEE
Q 018497          293 TERGKIFIR  301 (355)
Q Consensus       293 ~~~g~i~~~  301 (355)
                      ..+|+||+.
T Consensus       319 ~~~~~iyv~  327 (346)
T TIGR03547       319 SWNNGVLLI  327 (346)
T ss_pred             EcCCEEEEE
Confidence            456789998

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.57  E-value=2.2e-06  Score=78.20  Aligned_cols=143  Identities=13%  Similarity=0.143  Sum_probs=94.8

Q ss_pred             ceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee----eEe-cCCCCCCCCCCceE
Q 018497          164 SWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF----QTV-MMPYDLSTDDADKY  238 (355)
Q Consensus       164 ~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~----~~i-~lP~~~~~~~~~~~  238 (355)
                      +|..++ .+|.......     ++.+++.||.+++..   +......+..||+.+++|    ..+ ++| ..+   ....
T Consensus        52 ~W~~~~-~lp~~r~~~~-----~~~~~~~lyviGG~~---~~~~~~~v~~~d~~~~~w~~~~~~~~~lp-~~~---~~~~  118 (323)
T TIGR03548        52 KWVKDG-QLPYEAAYGA-----SVSVENGIYYIGGSN---SSERFSSVYRITLDESKEELICETIGNLP-FTF---ENGS  118 (323)
T ss_pred             eEEEcc-cCCccccceE-----EEEECCEEEEEcCCC---CCCCceeEEEEEEcCCceeeeeeEcCCCC-cCc---cCce
Confidence            699888 7776553322     788899999998754   122345788999999988    444 566 433   3456


Q ss_pred             EEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCc---eEEEEEe
Q 018497          239 LNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG---YGLLVYN  315 (355)
Q Consensus       239 L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~---~~l~~yd  315 (355)
                      .++.+|+|+++++.... ...-.+|.++-.  +.+|+++..++... .....++..+++||+.  ...+.   ..+..||
T Consensus       119 ~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~--~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~--GG~~~~~~~~~~~yd  192 (323)
T TIGR03548       119 ACYKDGTLYVGGGNRNG-KPSNKSYLFNLE--TQEWFELPDFPGEP-RVQPVCVKLQNELYVF--GGGSNIAYTDGYKYS  192 (323)
T ss_pred             EEEECCEEEEEeCcCCC-ccCceEEEEcCC--CCCeeECCCCCCCC-CCcceEEEECCEEEEE--cCCCCccccceEEEe
Confidence            77889999999886331 122346666642  46799877665432 1233444556789998  42221   1478999


Q ss_pred             CCCCeEEEEE
Q 018497          316 PHSDTFKCIG  325 (355)
Q Consensus       316 ~~t~~~~~v~  325 (355)
                      +++++|+.+.
T Consensus       193 ~~~~~W~~~~  202 (323)
T TIGR03548       193 PKKNQWQKVA  202 (323)
T ss_pred             cCCCeeEECC
Confidence            9999999885

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=98.39  E-value=3.8e-06  Score=71.22  Aligned_cols=203  Identities=15%  Similarity=0.220  Sum_probs=118.9

Q ss_pred             CCceEEEEcCCcccEEecCCCCCCC------------ce--eEEEEecCC---CC-C---CcEEEE--EEcCCCceeEec
Q 018497          113 DRSLIYLWNPLIKKYMTLPRPSLNP------------RY--LGFGVNSVS---GH-L---DDFKVV--YSLRSNSWKNIA  169 (355)
Q Consensus       113 ~~~~~~V~NP~T~~~~~LP~~~~~~------------~~--~~~g~d~~~---~~-~---~~ykvv--yss~t~~W~~~~  169 (355)
                      +...+.|.|-.+-+|.++|+.-...            +|  ....|+...   +. .   +-..++  ||.+++.|+...
T Consensus        42 ~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~  121 (392)
T KOG4693|consen   42 DPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPE  121 (392)
T ss_pred             CcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccc
Confidence            4567899999999999999832211            11  111222110   00 1   112222  999999998655


Q ss_pred             c--CCCceeeeccccccceeEeCceEEEEEeeeccCCC--CCCcEEEEEEcCCceeeEec---CCCCCCCCCCceEEEEE
Q 018497          170 Y--GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDN--SCPWLIVSFDFAKEIFQTVM---MPYDLSTDDADKYLNVF  242 (355)
Q Consensus       170 ~--~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~--~~~~~Il~fD~~~~~~~~i~---lP~~~~~~~~~~~L~~~  242 (355)
                      .  .+|.......     ++++++.+|-+++..   ++  .-..-+.++|+.|.+|+.+.   .|+.-++   .-.-.+.
T Consensus       122 v~G~vPgaRDGHs-----AcV~gn~MyiFGGye---~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD---FH~a~~~  190 (392)
T KOG4693|consen  122 VEGFVPGARDGHS-----ACVWGNQMYIFGGYE---EDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRD---FHTASVI  190 (392)
T ss_pred             eeeecCCccCCce-----eeEECcEEEEecChH---HHHHhhhccceeEeccceeeeehhccCCCchhhh---hhhhhhc
Confidence            2  3444443332     778888899887653   11  11245899999999999983   4412221   1223456


Q ss_pred             CCeEEEEEecCCC--------CccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEeEEEeeCCcEEEEEEeeCCc-----
Q 018497          243 DGYLCVFATIPNN--------TFRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRHGG-----  308 (355)
Q Consensus       243 ~G~L~~v~~~~~~--------~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~~-----  308 (355)
                      +|..+++++..+.        +...-+|=.|+-  ..+.|..-.+-.+.+. ...--.+.-+|++|+.  ..+.+     
T Consensus       191 ~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~F--GGYng~ln~H  266 (392)
T KOG4693|consen  191 DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMF--GGYNGTLNVH  266 (392)
T ss_pred             cceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCCCcCCCcccccceEEEcceEEEe--cccchhhhhh
Confidence            6888888876431        111223333432  2367888644443332 1222334457889988  32222     


Q ss_pred             -eEEEEEeCCCCeEEEEEEecCc
Q 018497          309 -YGLLVYNPHSDTFKCIGVHLPY  330 (355)
Q Consensus       309 -~~l~~yd~~t~~~~~v~~~~~~  330 (355)
                       +.|+.||++|..|+.|..+|+.
T Consensus       267 fndLy~FdP~t~~W~~I~~~Gk~  289 (392)
T KOG4693|consen  267 FNDLYCFDPKTSMWSVISVRGKY  289 (392)
T ss_pred             hcceeecccccchheeeeccCCC
Confidence             1699999999999999998764

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.00  E-value=0.0003  Score=63.52  Aligned_cols=210  Identities=14%  Similarity=0.211  Sum_probs=124.0

Q ss_pred             CceEEEEcCCcccEEecCCCCC--CCce-----------eEEEEecCCCCCC---cEEEE--EEcCCCceeEecc-CCCc
Q 018497          114 RSLIYLWNPLIKKYMTLPRPSL--NPRY-----------LGFGVNSVSGHLD---DFKVV--YSLRSNSWKNIAY-GFPR  174 (355)
Q Consensus       114 ~~~~~V~NP~T~~~~~LP~~~~--~~~~-----------~~~g~d~~~~~~~---~ykvv--yss~t~~W~~~~~-~~p~  174 (355)
                      .+.+|++|--+.+|+.+-.+..  .++.           ..||-.-.+++..   +||=+  |+..+++|+.+.. ..|.
T Consensus        97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS  176 (521)
T KOG1230|consen   97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS  176 (521)
T ss_pred             eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence            3468999999999987644322  2211           2222211111122   34433  9999999998872 2222


Q ss_pred             eeeeccccccceeEeCceEEEEEeeeccC-CCCCCcEEEEEEcCCceeeEecCCCCCC-CCCCceEEEEE-CCeEEEEEe
Q 018497          175 SIEINRSHINSSVFLNGSVHWCARFSCYH-DNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVF-DGYLCVFAT  251 (355)
Q Consensus       175 ~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~~~~Il~fD~~~~~~~~i~lP~~~~-~~~~~~~L~~~-~G~L~~v~~  251 (355)
                      ....+ .    .|.....|.-+++.+-.+ +...-+-+.+||+++=+|+.+.-+ ... +.+...++.+. +|.++|.++
T Consensus       177 ~RSGH-R----MvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps-ga~PtpRSGcq~~vtpqg~i~vyGG  250 (521)
T KOG1230|consen  177 PRSGH-R----MVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS-GAGPTPRSGCQFSVTPQGGIVVYGG  250 (521)
T ss_pred             CCccc-e----eEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC-CCCCCCCCcceEEecCCCcEEEEcc
Confidence            22222 2    566666666655544000 001124589999999999998545 322 22245666676 799988887


Q ss_pred             cCC--------CCccEEEEEEeccC---CCCCCeEEEEEecCCCc--eeEeEEEeeCCc-EEEEEEee---C-------C
Q 018497          252 IPN--------NTFRSYELWVMKEY---GLTESWTKLYTIEKPQR--IWWPLGFTERGK-IFIRGECR---H-------G  307 (355)
Q Consensus       252 ~~~--------~~~~~l~iW~l~~~---~~~~~W~~~~~i~~~~~--~~~~~~~~~~g~-i~~~~~~~---~-------~  307 (355)
                      ...        .....-++|.|+..   +.+..|.++..+.+++-  ....++++.+++ ++|-|-+.   .       -
T Consensus       251 YsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F  330 (521)
T KOG1230|consen  251 YSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEF  330 (521)
T ss_pred             hhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhh
Confidence            632        13345679999742   24678999888766554  233466777764 44432120   0       0


Q ss_pred             ceEEEEEeCCCCeEEEEEEecC
Q 018497          308 GYGLLVYNPHSDTFKCIGVHLP  329 (355)
Q Consensus       308 ~~~l~~yd~~t~~~~~v~~~~~  329 (355)
                      .+.|+.||+..++|...++++.
T Consensus       331 ~NDLy~fdlt~nrW~~~qlq~~  352 (521)
T KOG1230|consen  331 FNDLYFFDLTRNRWSEGQLQGK  352 (521)
T ss_pred             hhhhhheecccchhhHhhhccC
Confidence            1169999999999988877654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=8.4e-05  Score=64.68  Aligned_cols=39  Identities=28%  Similarity=0.517  Sum_probs=36.4

Q ss_pred             CCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCChH
Q 018497            5 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKT   43 (355)
Q Consensus         5 ~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~   43 (355)
                      +..||||+++.||+.||.++|++...|||||+++.++..
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~  136 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES  136 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence            568999999999999999999999999999999988754

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=97.26  E-value=0.028  Score=54.14  Aligned_cols=200  Identities=11%  Similarity=0.084  Sum_probs=117.2

Q ss_pred             eEEEEcCCcccEEecCCCCCCC--ce-----------eEEE-EecCCCCCCcEEEE-EEcCCCceeEecc--CCCceeee
Q 018497          116 LIYLWNPLIKKYMTLPRPSLNP--RY-----------LGFG-VNSVSGHLDDFKVV-YSLRSNSWKNIAY--GFPRSIEI  178 (355)
Q Consensus       116 ~~~V~NP~T~~~~~LP~~~~~~--~~-----------~~~g-~d~~~~~~~~ykvv-yss~t~~W~~~~~--~~p~~~~~  178 (355)
                      .++++|--++.|.........+  .+           +.|| .+...  ..-..+. ||..|++|+.+..  .+|.....
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~--~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~  166 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY--RNLNELHSLDLSTRTWSLLSPTGDPPPPRAG  166 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC--CChhheEeccCCCCcEEEecCcCCCCCCccc
Confidence            4999999998887655432221  11           2232 12110  1111222 9999999998763  22322222


Q ss_pred             ccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCC-CCCCceEEEEECCeEEEEEecCCCCc
Q 018497          179 NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVFDGYLCVFATIPNNTF  257 (355)
Q Consensus       179 ~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~-~~~~~~~L~~~~G~L~~v~~~~~~~~  257 (355)
                      + .    .+.++.++|..++..  ......+.+.+||+.+.+|..+... ... .......++..+++++++.+......
T Consensus       167 H-s----~~~~g~~l~vfGG~~--~~~~~~ndl~i~d~~~~~W~~~~~~-g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~  238 (482)
T KOG0379|consen  167 H-S----ATVVGTKLVVFGGIG--GTGDSLNDLHIYDLETSTWSELDTQ-GEAPSPRYGHAMVVVGNKLLVFGGGDDGDV  238 (482)
T ss_pred             c-e----EEEECCEEEEECCcc--CcccceeeeeeeccccccceecccC-CCCCCCCCCceEEEECCeEEEEeccccCCc
Confidence            2 1    677778888887765  2223567899999999999998544 322 22355678888999999987653223


Q ss_pred             cEEEEEEeccCCCCCCeEEEEEecCCCc--eeEeEEEeeCCcEEEEEEeeCC----ceEEEEEeCCCCeEEEEEEec
Q 018497          258 RSYELWVMKEYGLTESWTKLYTIEKPQR--IWWPLGFTERGKIFIRGECRHG----GYGLLVYNPHSDTFKCIGVHL  328 (355)
Q Consensus       258 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~~~~~~~~~----~~~l~~yd~~t~~~~~v~~~~  328 (355)
                      .-=++|.|+-.  ..+|.+........-  ......+. +..+++.|-....    -..++.+|++++.|.++....
T Consensus       239 ~l~D~~~ldl~--~~~W~~~~~~g~~p~~R~~h~~~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  239 YLNDVHILDLS--TWEWKLLPTGGDLPSPRSGHSLTVS-GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             eecceEeeecc--cceeeeccccCCCCCCcceeeeEEE-CCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence            44468999863  267875443322111  23333333 3345555211111    115899999999999886544

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=97.24  E-value=0.013  Score=56.56  Aligned_cols=158  Identities=15%  Similarity=0.122  Sum_probs=100.2

Q ss_pred             EEcCCCceeEecc--CCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCC-CCCC
Q 018497          158 YSLRSNSWKNIAY--GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDL-STDD  234 (355)
Q Consensus       158 yss~t~~W~~~~~--~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~-~~~~  234 (355)
                      ++.++..|.....  ..|.... ...    .+.++..||.+++..  ........|..||+.+.+|..+..- .. ....
T Consensus        93 ~d~~~~~w~~~~~~g~~p~~r~-g~~----~~~~~~~l~lfGG~~--~~~~~~~~l~~~d~~t~~W~~l~~~-~~~P~~r  164 (482)
T KOG0379|consen   93 LDLESQLWTKPAATGDEPSPRY-GHS----LSAVGDKLYLFGGTD--KKYRNLNELHSLDLSTRTWSLLSPT-GDPPPPR  164 (482)
T ss_pred             eecCCcccccccccCCCCCccc-cee----EEEECCeEEEEcccc--CCCCChhheEeccCCCCcEEEecCc-CCCCCCc
Confidence            8888889976552  2232221 222    688899999998876  1122345899999999999987321 11 1112


Q ss_pred             CceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc--eeEeEEEeeCCcEEEEEEeeCC-c---
Q 018497          235 ADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR--IWWPLGFTERGKIFIRGECRHG-G---  308 (355)
Q Consensus       235 ~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~~~~~~~~~-~---  308 (355)
                      ..-.++..+.+|+++++........-++|+++-.  ...|.++.+....+-  ....+.+. ++++++.+ . .+ +   
T Consensus       165 ~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~g-G-~~~~~~~  239 (482)
T KOG0379|consen  165 AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE--TSTWSELDTQGEAPSPRYGHAMVVV-GNKLLVFG-G-GDDGDVY  239 (482)
T ss_pred             ccceEEEECCEEEEECCccCcccceeeeeeeccc--cccceecccCCCCCCCCCCceEEEE-CCeEEEEe-c-cccCCce
Confidence            4456777778999998876532245678888853  356999888765543  33334444 44455541 1 22 1   


Q ss_pred             -eEEEEEeCCCCeEEEEEEec
Q 018497          309 -YGLLVYNPHSDTFKCIGVHL  328 (355)
Q Consensus       309 -~~l~~yd~~t~~~~~v~~~~  328 (355)
                       ..+..+|+.+.+|+.+...+
T Consensus       240 l~D~~~ldl~~~~W~~~~~~g  260 (482)
T KOG0379|consen  240 LNDVHILDLSTWEWKLLPTGG  260 (482)
T ss_pred             ecceEeeecccceeeeccccC
Confidence             16999999999999765444

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=97.20  E-value=0.017  Score=52.66  Aligned_cols=152  Identities=13%  Similarity=0.224  Sum_probs=94.7

Q ss_pred             EEcCCCceeEecc-CCCceeeeccccccceeEe-CceEEEEEeeeccCC---CCCCcEEEEEEcCCceeeEecCCCCCCC
Q 018497          158 YSLRSNSWKNIAY-GFPRSIEINRSHINSSVFL-NGSVHWCARFSCYHD---NSCPWLIVSFDFAKEIFQTVMMPYDLST  232 (355)
Q Consensus       158 yss~t~~W~~~~~-~~p~~~~~~~~~~~~~v~~-~G~lyw~~~~~~~~~---~~~~~~Il~fD~~~~~~~~i~lP~~~~~  232 (355)
                      |+.+++.|+.+.. +.|......+     .|.+ .|.+|.+++..-++.   ...-.-+-.||+.+.+|..+.++ ....
T Consensus       103 Yn~k~~eWkk~~spn~P~pRsshq-----~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~-g~PS  176 (521)
T KOG1230|consen  103 YNTKKNEWKKVVSPNAPPPRSSHQ-----AVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG-GGPS  176 (521)
T ss_pred             EeccccceeEeccCCCcCCCccce-----eEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC-CCCC
Confidence            9999999998872 2233333333     4444 476666665542211   12223478899999999999888 6655


Q ss_pred             CCCceEEEEECCeEEEEEecCCCC---ccEEEEEEeccCCCCCCeEEEEEecCC---CceeEeEEEeeCCcEEEEE-Eee
Q 018497          233 DDADKYLNVFDGYLCVFATIPNNT---FRSYELWVMKEYGLTESWTKLYTIEKP---QRIWWPLGFTERGKIFIRG-ECR  305 (355)
Q Consensus       233 ~~~~~~L~~~~G~L~~v~~~~~~~---~~~l~iW~l~~~~~~~~W~~~~~i~~~---~~~~~~~~~~~~g~i~~~~-~~~  305 (355)
                      .+..-+++.++.+|.++++..+..   ..-=+||.++-.  ...|.+... +-.   +.....+.++.+|.||+.| .++
T Consensus       177 ~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd--tykW~Klep-sga~PtpRSGcq~~vtpqg~i~vyGGYsK  253 (521)
T KOG1230|consen  177 PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD--TYKWSKLEP-SGAGPTPRSGCQFSVTPQGGIVVYGGYSK  253 (521)
T ss_pred             CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc--ceeeeeccC-CCCCCCCCCcceEEecCCCcEEEEcchhH
Confidence            556678999999999998765521   111257777642  367999876 321   1123346667678788873 110


Q ss_pred             -----C-C----ceEEEEEeCCC
Q 018497          306 -----H-G----GYGLLVYNPHS  318 (355)
Q Consensus       306 -----~-~----~~~l~~yd~~t  318 (355)
                           . +    ...++..++++
T Consensus       254 ~~~kK~~dKG~~hsDmf~L~p~~  276 (521)
T KOG1230|consen  254 QRVKKDVDKGTRHSDMFLLKPED  276 (521)
T ss_pred             hhhhhhhhcCceeeeeeeecCCc
Confidence                 0 0    11688899888

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=97.17  E-value=0.011  Score=50.62  Aligned_cols=175  Identities=16%  Similarity=0.261  Sum_probs=102.0

Q ss_pred             eEEEEcCCcccEEe------cCCCCCCCce-------eEEE-EecC-CCCCCcEEEEEEcCCCceeEecc-CCCceeeec
Q 018497          116 LIYLWNPLIKKYMT------LPRPSLNPRY-------LGFG-VNSV-SGHLDDFKVVYSLRSNSWKNIAY-GFPRSIEIN  179 (355)
Q Consensus       116 ~~~V~NP~T~~~~~------LP~~~~~~~~-------~~~g-~d~~-~~~~~~ykvvyss~t~~W~~~~~-~~p~~~~~~  179 (355)
                      -++-++|-|.+|++      +|+.......       +.|| |... ...+.+-.+ +|..|-+||.+.. ..|..+...
T Consensus       106 ~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~-ld~~TmtWr~~~Tkg~PprwRDF  184 (392)
T KOG4693|consen  106 LLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHV-LDFATMTWREMHTKGDPPRWRDF  184 (392)
T ss_pred             eeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhcccee-EeccceeeeehhccCCCchhhhh
Confidence            46778999999986      3443333211       2232 3222 000222222 7888999998863 333333333


Q ss_pred             cccccceeEeCceEEEEEeeec----cC--CCCCCcEEEEEEcCCceeeEe----cCCCCCCCCCCceEEEEECCeEEEE
Q 018497          180 RSHINSSVFLNGSVHWCARFSC----YH--DNSCPWLIVSFDFAKEIFQTV----MMPYDLSTDDADKYLNVFDGYLCVF  249 (355)
Q Consensus       180 ~~~~~~~v~~~G~lyw~~~~~~----~~--~~~~~~~Il~fD~~~~~~~~i----~lP~~~~~~~~~~~L~~~~G~L~~v  249 (355)
                      ..    ++.++|.+|-+++..-    ++  +....+.|+++|+.|+.|..-    .+| ..+   ..-..-+.+|+++++
T Consensus       185 H~----a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P-~GR---RSHS~fvYng~~Y~F  256 (392)
T KOG4693|consen  185 HT----ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP-GGR---RSHSTFVYNGKMYMF  256 (392)
T ss_pred             hh----hhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC-Ccc---cccceEEEcceEEEe
Confidence            33    7888999999976541    11  123347799999999999765    123 222   233456889999999


Q ss_pred             EecCCCC-ccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEeEEEeeCCcEEEE
Q 018497          250 ATIPNNT-FRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIR  301 (355)
Q Consensus       250 ~~~~~~~-~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~  301 (355)
                      ++..+.. ..--++|.++..  ..-|.++..-...+. ..+-.++..+++||+.
T Consensus       257 GGYng~ln~HfndLy~FdP~--t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LF  308 (392)
T KOG4693|consen  257 GGYNGTLNVHFNDLYCFDPK--TSMWSVISVRGKYPSARRRQCSVVSGGKVYLF  308 (392)
T ss_pred             cccchhhhhhhcceeecccc--cchheeeeccCCCCCcccceeEEEECCEEEEe
Confidence            9876521 123468888753  467888655433322 2222334445677776

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.10  E-value=0.16  Score=44.16  Aligned_cols=199  Identities=14%  Similarity=0.146  Sum_probs=110.6

Q ss_pred             eeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcEEEE-------EEcCCCceeEeccC
Q 018497           99 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVV-------YSLRSNSWKNIAYG  171 (355)
Q Consensus        99 ~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykvv-------yss~t~~W~~~~~~  171 (355)
                      ...+|-|++.+.  ..++++.++|.+++...+..+.    ..++.++..   .+.+-|.       ++..++.++.+. .
T Consensus         8 d~~~g~l~~~D~--~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~---~g~l~v~~~~~~~~~d~~~g~~~~~~-~   77 (246)
T PF08450_consen    8 DPRDGRLYWVDI--PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRP---DGRLYVADSGGIAVVDPDTGKVTVLA-D   77 (246)
T ss_dssp             ETTTTEEEEEET--TTTEEEEEETTTTEEEEEESSS----EEEEEEECT---TSEEEEEETTCEEEEETTTTEEEEEE-E
T ss_pred             ECCCCEEEEEEc--CCCEEEEEECCCCeEEEEecCC----CceEEEEcc---CCEEEEEEcCceEEEecCCCcEEEEe-e
Confidence            334666766664  6789999999999886554443    235666633   3333322       799999998777 3


Q ss_pred             CCce---eeeccccccceeEeCceEEEEEeeeccCCCCCC--cEEEEEEcCCceeeEe--cCCCCCCCCCCceEEEEECC
Q 018497          172 FPRS---IEINRSHINSSVFLNGSVHWCARFSCYHDNSCP--WLIVSFDFAKEIFQTV--MMPYDLSTDDADKYLNVFDG  244 (355)
Q Consensus       172 ~p~~---~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~--~~Il~fD~~~~~~~~i--~lP~~~~~~~~~~~L~~~~G  244 (355)
                      .+..   ......-   .+--+|.+|+-....  ......  ..|..+|.. .+.+.+  .+.  .    .......-+|
T Consensus        78 ~~~~~~~~~~~ND~---~vd~~G~ly~t~~~~--~~~~~~~~g~v~~~~~~-~~~~~~~~~~~--~----pNGi~~s~dg  145 (246)
T PF08450_consen   78 LPDGGVPFNRPNDV---AVDPDGNLYVTDSGG--GGASGIDPGSVYRIDPD-GKVTVVADGLG--F----PNGIAFSPDG  145 (246)
T ss_dssp             EETTCSCTEEEEEE---EE-TTS-EEEEEECC--BCTTCGGSEEEEEEETT-SEEEEEEEEES--S----EEEEEEETTS
T ss_pred             ccCCCcccCCCceE---EEcCCCCEEEEecCC--CccccccccceEEECCC-CeEEEEecCcc--c----ccceEECCcc
Confidence            3211   1111111   445688987765543  111112  679999999 555544  221  0    0112223345


Q ss_pred             e-EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEe-cCCCc--eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 018497          245 Y-LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI-EKPQR--IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT  320 (355)
Q Consensus       245 ~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~  320 (355)
                      + |+++....+    .  ||.++-......+.....+ .....  ...-+++..+|.|++.  ....+ .+..||++.+.
T Consensus       146 ~~lyv~ds~~~----~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va--~~~~~-~I~~~~p~G~~  216 (246)
T PF08450_consen  146 KTLYVADSFNG----R--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA--DWGGG-RIVVFDPDGKL  216 (246)
T ss_dssp             SEEEEEETTTT----E--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE--EETTT-EEEEEETTSCE
T ss_pred             hheeecccccc----e--eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE--EcCCC-EEEEECCCccE
Confidence            4 666555443    4  6666643223346654443 33322  2334666678899998  63455 59999999877


Q ss_pred             EEEEEEec
Q 018497          321 FKCIGVHL  328 (355)
Q Consensus       321 ~~~v~~~~  328 (355)
                      +..+....
T Consensus       217 ~~~i~~p~  224 (246)
T PF08450_consen  217 LREIELPV  224 (246)
T ss_dssp             EEEEE-SS
T ss_pred             EEEEcCCC
Confidence            88888773

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=96.89  E-value=0.082  Score=46.10  Aligned_cols=127  Identities=14%  Similarity=0.176  Sum_probs=83.3

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceee-EecCCCCCCCCC---------CceEEEEECCeEEEEEecCCC
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLSTDD---------ADKYLNVFDGYLCVFATIPNN  255 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~-~i~lP~~~~~~~---------~~~~L~~~~G~L~~v~~~~~~  255 (355)
                      -|+.||.+|+-....        ..|+.||+.+++.. ...|| ...-.+         ..+.+++-+..|.++....+.
T Consensus        74 ~vVYngslYY~~~~s--------~~IvkydL~t~~v~~~~~L~-~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~  144 (250)
T PF02191_consen   74 HVVYNGSLYYNKYNS--------RNIVKYDLTTRSVVARRELP-GAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN  144 (250)
T ss_pred             eEEECCcEEEEecCC--------ceEEEEECcCCcEEEEEECC-ccccccccceecCCCceEEEEEcCCCEEEEEecCCC
Confidence            688999999987754        68999999999998 67888 554221         346788888889999877652


Q ss_pred             CccEEEEEEeccC--CCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEee-CCceEEEEEeCCCCeEEEEEEe
Q 018497          256 TFRSYELWVMKEY--GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR-HGGYGLLVYNPHSDTFKCIGVH  327 (355)
Q Consensus       256 ~~~~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~l~~yd~~t~~~~~v~~~  327 (355)
                       ...+.|-.|+..  ..+..|.--  ++....   --++-..|.+|.+.... .+.+-.+.||..+++-+.+.+.
T Consensus       145 -~g~ivvskld~~tL~v~~tw~T~--~~k~~~---~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~  213 (250)
T PF02191_consen  145 -NGNIVVSKLDPETLSVEQTWNTS--YPKRSA---GNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP  213 (250)
T ss_pred             -CCcEEEEeeCcccCceEEEEEec--cCchhh---cceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence             236888888753  234556542  222111   11222346677762110 1133567899999998887664

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>smart00284 OLF Olfactomedin-like domains

Probab=96.87  E-value=0.044  Score=47.58  Aligned_cols=135  Identities=17%  Similarity=0.217  Sum_probs=85.9

Q ss_pred             CCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCC-C--------CCCceEEE
Q 018497          171 GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLS-T--------DDADKYLN  240 (355)
Q Consensus       171 ~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~-~--------~~~~~~L~  240 (355)
                      .+|..+....     -|+.||.+|+.....        ..|+.||+.+++.... .+| ... .        ....+.|+
T Consensus        69 ~Lp~~~~GtG-----~VVYngslYY~~~~s--------~~iiKydL~t~~v~~~~~Lp-~a~y~~~~~Y~~~~~sdiDlA  134 (255)
T smart00284       69 PLPHAGQGTG-----VVVYNGSLYFNKFNS--------HDICRFDLTTETYQKEPLLN-GAGYNNRFPYAWGGFSDIDLA  134 (255)
T ss_pred             ECCCcccccc-----EEEECceEEEEecCC--------ccEEEEECCCCcEEEEEecC-ccccccccccccCCCccEEEE
Confidence            4666544332     799999999965543        6799999999999644 677 432 1        11457899


Q ss_pred             EECCeEEEEEecCCCCccEEEEEEeccC--CCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEee---CCceEEEEEe
Q 018497          241 VFDGYLCVFATIPNNTFRSYELWVMKEY--GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR---HGGYGLLVYN  315 (355)
Q Consensus       241 ~~~G~L~~v~~~~~~~~~~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~---~~~~~l~~yd  315 (355)
                      +-+..|.++....+ ....+.|-.|+..  ..+..|..  .++....   --++-..|.+|.+  ..   .+.+-.+.||
T Consensus       135 vDE~GLWvIYat~~-~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa---~naFmvCGvLY~~--~s~~~~~~~I~yayD  206 (255)
T smart00284      135 VDENGLWVIYATEQ-NAGKIVISKLNPATLTIENTWIT--TYNKRSA---SNAFMICGILYVT--RSLGSKGEKVFYAYD  206 (255)
T ss_pred             EcCCceEEEEeccC-CCCCEEEEeeCcccceEEEEEEc--CCCcccc---cccEEEeeEEEEE--ccCCCCCcEEEEEEE
Confidence            99999999987654 2367888888864  23345655  2222111   1222234667776  31   1233577899


Q ss_pred             CCCCeEEEEEEe
Q 018497          316 PHSDTFKCIGVH  327 (355)
Q Consensus       316 ~~t~~~~~v~~~  327 (355)
                      ..|++-+.+.+.
T Consensus       207 t~t~~~~~~~i~  218 (255)
T smart00284      207 TNTGKEGHLDIP  218 (255)
T ss_pred             CCCCccceeeee
Confidence            999988777664

>PF13964 Kelch_6: Kelch motif

Probab=96.77  E-value=0.004  Score=39.56  Aligned_cols=40  Identities=13%  Similarity=0.290  Sum_probs=33.2

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCC
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMP  227 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP  227 (355)
                      .|.++|.||.+++..  ........+..||+++++|+.+ ++|
T Consensus         7 ~v~~~~~iyv~GG~~--~~~~~~~~v~~yd~~t~~W~~~~~mp   47 (50)
T PF13964_consen    7 AVVVGGKIYVFGGYD--NSGKYSNDVERYDPETNTWEQLPPMP   47 (50)
T ss_pred             EEEECCEEEEECCCC--CCCCccccEEEEcCCCCcEEECCCCC
Confidence            789999999999876  1134567899999999999998 666

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=96.50  E-value=0.0096  Score=37.08  Aligned_cols=40  Identities=13%  Similarity=0.242  Sum_probs=33.4

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCC
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMP  227 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP  227 (355)
                      .+.++|.+|.+++..  ........+..||+.+++|+.+ +||
T Consensus         7 ~~~~~~~iyv~GG~~--~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    7 AVVVGNKIYVIGGYD--GNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEETTEEEEEEEBE--STSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             EEEECCEEEEEeeec--ccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            789999999999887  2245567899999999999988 555

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=96.35  E-value=0.0017  Score=56.84  Aligned_cols=44  Identities=20%  Similarity=0.443  Sum_probs=38.8

Q ss_pred             CCCCHHHHHHHHhcCC-----cccchhhcccchhhHhhhCChHHHHHHH
Q 018497            6 FRLPEDVMIDIFLRLE-----VKNLARLRCVCKSWNTLLTSKTFVEIHL   49 (355)
Q Consensus         6 ~~LP~dll~eIL~rLP-----~~~l~r~r~VcK~W~~li~~~~F~~~~~   49 (355)
                      ..||||++.+||.++=     ..+|.++.+|||.|+-...+|.|-+...
T Consensus       108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC  156 (366)
T KOG2997|consen  108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC  156 (366)
T ss_pred             hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence            5799999999999874     4899999999999999999998866643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=96.21  E-value=1.1  Score=43.68  Aligned_cols=276  Identities=16%  Similarity=0.178  Sum_probs=133.4

Q ss_pred             CCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCChHHHHHH-HhcCCCCCC----cEEEeec-CCCCceeeeccC--
Q 018497            5 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIH-LNQSMRNPR----PLLFRHG-ISPSYLGFYSTK--   76 (355)
Q Consensus         5 ~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~~~-~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~--   76 (355)
                      ...||.|+...||..|+.+++++++.||+.|+.++.+...-... .......+.    ..-.... .......+|...  
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~~~~  187 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRRRFR  187 (537)
T ss_pred             hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhhhhhh
Confidence            35799999999999999999999999999999999876554432 222211110    0000000 000000111111  


Q ss_pred             -CcccccCCCCCCCC--C-CCCeEEEee-eCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCC
Q 018497           77 -CKEFEDLCDPPFRT--Q-LADLDVVGS-CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHL  151 (355)
Q Consensus        77 -~~~~~~~~~p~~~~--~-~~~~~~~~s-~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~  151 (355)
                       ...+.....+....  . .....+..- .+|.+ ....  ....+.+|+..++.....+........-++.+.     .
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~-~~~s--~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~-----~  259 (537)
T KOG0274|consen  188 LSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFF-KSGS--DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFP-----S  259 (537)
T ss_pred             ccccccccccccceeecccCcchhhhheeecCeE-EecC--CCceeEEeecccceEEEeeccCCCCCceeEEEe-----c
Confidence             11121111111000  0 001111111 13333 3331  455667999999988766333222222334443     2


Q ss_pred             CcEEEE---EEcCCCceeEeccCCCceeeeccccccceeE--eCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-c
Q 018497          152 DDFKVV---YSLRSNSWKNIAYGFPRSIEINRSHINSSVF--LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-M  225 (355)
Q Consensus       152 ~~ykvv---yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~  225 (355)
                      ++.+++   .|-...-|.......-........    .+.  -.+..+-..       +...+.|.++|+.+.....+ .
T Consensus       260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s----tv~~~~~~~~~~~s-------gs~D~tVkVW~v~n~~~l~l~~  328 (537)
T KOG0274|consen  260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTS----SVRCLTIDPFLLVS-------GSRDNTVKVWDVTNGACLNLLR  328 (537)
T ss_pred             CCCEEEEEecCCcEEeEecCCCcEEEEecCCCc----eEEEEEccCceEee-------ccCCceEEEEeccCcceEEEec
Confidence            223444   333334565222111111111111    111  111222222       12357899999998777555 2


Q ss_pred             CCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEee
Q 018497          226 MPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR  305 (355)
Q Consensus       226 lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~  305 (355)
                      -+ .     ..+.-+.+++.+.+.+..++    .+.||.....      .-++.+......+..+.+..+ ..++.| . 
T Consensus       329 ~h-~-----~~V~~v~~~~~~lvsgs~d~----~v~VW~~~~~------~cl~sl~gH~~~V~sl~~~~~-~~~~Sg-s-  389 (537)
T KOG0274|consen  329 GH-T-----GPVNCVQLDEPLLVSGSYDG----TVKVWDPRTG------KCLKSLSGHTGRVYSLIVDSE-NRLLSG-S-  389 (537)
T ss_pred             cc-c-----ccEEEEEecCCEEEEEecCc----eEEEEEhhhc------eeeeeecCCcceEEEEEecCc-ceEEee-e-
Confidence            12 1     23555666677777777764    8999987721      223344332212333333322 556652 2 


Q ss_pred             CCceEEEEEeCCCC
Q 018497          306 HGGYGLLVYNPHSD  319 (355)
Q Consensus       306 ~~~~~l~~yd~~t~  319 (355)
                      .++ .+-++|++++
T Consensus       390 ~D~-~IkvWdl~~~  402 (537)
T KOG0274|consen  390 LDT-TIKVWDLRTK  402 (537)
T ss_pred             ecc-ceEeecCCch
Confidence            454 4888888888

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.06  E-value=0.0044  Score=54.87  Aligned_cols=41  Identities=24%  Similarity=0.510  Sum_probs=37.2

Q ss_pred             CCCC----HHHHHHHHhcCCcccchhhcccchhhHhhhCChHHHH
Q 018497            6 FRLP----EDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVE   46 (355)
Q Consensus         6 ~~LP----~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~   46 (355)
                      ..||    +++.+.||+.|-..+|+.+..|||+|+++++++..-+
T Consensus        76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK  120 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK  120 (499)
T ss_pred             HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence            4689    9999999999999999999999999999999876533

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.23  E-value=0.35  Score=42.06  Aligned_cols=119  Identities=14%  Similarity=0.200  Sum_probs=78.0

Q ss_pred             CCCeEEEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCC-ceeEEEEecCCCCCCcE-------EEE-EEcCC
Q 018497           92 LADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP-RYLGFGVNSVSGHLDDF-------KVV-YSLRS  162 (355)
Q Consensus        92 ~~~~~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~-~~~~~g~d~~~~~~~~y-------kvv-yss~t  162 (355)
                      .....+++.-+|-|-....  ..+.+.-.||.++.-..+|++.... ..-.+..|+.   ..-+       .+- |+..+
T Consensus       189 ~gpyGi~atpdGsvwyasl--agnaiaridp~~~~aev~p~P~~~~~gsRriwsdpi---g~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         189 GGPYGICATPDGSVWYASL--AGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPI---GRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             CCCcceEECCCCcEEEEec--cccceEEcccccCCcceecCCCcccccccccccCcc---CcEEEeccCCceeeEeCccc
Confidence            4456688888888876653  3566778899999888898887632 2234455554   2111       111 89999


Q ss_pred             CceeEeccCCCceeeeccccccceeEeCc-eEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCC
Q 018497          163 NSWKNIAYGFPRSIEINRSHINSSVFLNG-SVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDL  230 (355)
Q Consensus       163 ~~W~~~~~~~p~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~  230 (355)
                      .+|++.+  +|..-....     ++++|. -.-|+..-.       ...|..||+++++|++++.| ..
T Consensus       264 ~sW~eyp--LPgs~arpy-----s~rVD~~grVW~sea~-------agai~rfdpeta~ftv~p~p-r~  317 (353)
T COG4257         264 TSWIEYP--LPGSKARPY-----SMRVDRHGRVWLSEAD-------AGAIGRFDPETARFTVLPIP-RP  317 (353)
T ss_pred             ccceeee--CCCCCCCcc-----eeeeccCCcEEeeccc-------cCceeecCcccceEEEecCC-CC
Confidence            9999877  554322111     555544 345554332       47899999999999999888 44

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.20  E-value=2.2  Score=38.61  Aligned_cols=129  Identities=12%  Similarity=0.189  Sum_probs=73.5

Q ss_pred             EEcCCCceeEeccCCCceeeeccccccceeEeCce-EEEEEeeeccCCCCCCcEE--EEEEcCCceeeEe-cCCCCCCCC
Q 018497          158 YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLI--VSFDFAKEIFQTV-MMPYDLSTD  233 (355)
Q Consensus       158 yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~~~I--l~fD~~~~~~~~i-~lP~~~~~~  233 (355)
                      |+..++.|+... ..|+......     ++...|. +-.+.++-  ........+  .-|.-...+|..+ ++| .....
T Consensus       201 y~p~~n~W~~~G-~~pf~~~aGs-----a~~~~~n~~~lInGEi--KpGLRt~~~k~~~~~~~~~~w~~l~~lp-~~~~~  271 (381)
T COG3055         201 YDPSTNQWRNLG-ENPFYGNAGS-----AVVIKGNKLTLINGEI--KPGLRTAEVKQADFGGDNLKWLKLSDLP-APIGS  271 (381)
T ss_pred             cccccchhhhcC-cCcccCccCc-----ceeecCCeEEEEccee--cCCccccceeEEEeccCceeeeeccCCC-CCCCC
Confidence            999999999998 7777655442     4554444 54454432  222233334  4445567899888 777 44433


Q ss_pred             CC----ceEEEEECCeEEEEEecCC------------------CCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEE
Q 018497          234 DA----DKYLNVFDGYLCVFATIPN------------------NTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLG  291 (355)
Q Consensus       234 ~~----~~~L~~~~G~L~~v~~~~~------------------~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~  291 (355)
                      +.    ...-..++|.+.+......                  ...-+-+||.+++    .+|..+..++... ... +.
T Consensus       272 ~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~----g~Wk~~GeLp~~l-~YG-~s  345 (381)
T COG3055         272 NKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN----GSWKIVGELPQGL-AYG-VS  345 (381)
T ss_pred             CccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC----CceeeecccCCCc-cce-EE
Confidence            21    2233445556655554311                  0112446788774    6799999988743 222 33


Q ss_pred             EeeCCcEEEE
Q 018497          292 FTERGKIFIR  301 (355)
Q Consensus       292 ~~~~g~i~~~  301 (355)
                      +.-++.|+++
T Consensus       346 ~~~nn~vl~I  355 (381)
T COG3055         346 LSYNNKVLLI  355 (381)
T ss_pred             EecCCcEEEE
Confidence            3445567777

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=95.17  E-value=0.066  Score=33.69  Aligned_cols=40  Identities=15%  Similarity=0.214  Sum_probs=31.5

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEec
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM  225 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~  225 (355)
                      .++++|+||.+++............+..||+++++|+.++
T Consensus         7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~   46 (49)
T PF07646_consen    7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS   46 (49)
T ss_pred             EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence            7899999999988710023556678999999999999884

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13964 Kelch_6: Kelch motif

Probab=95.05  E-value=0.095  Score=33.06  Aligned_cols=38  Identities=11%  Similarity=0.104  Sum_probs=26.8

Q ss_pred             eeeCceEEEeecC----CCCceEEEEcCCcccEEecCCCCCC
Q 018497           99 GSCNGVLCFCSNG----SDRSLIYLWNPLIKKYMTLPRPSLN  136 (355)
Q Consensus        99 ~s~~GLl~l~~~~----~~~~~~~V~NP~T~~~~~LP~~~~~  136 (355)
                      .+.+|-|.+.++.    .....+.++||.|++|..+|+++..
T Consensus         8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p   49 (50)
T PF13964_consen    8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP   49 (50)
T ss_pred             EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence            4455555444422    1246899999999999999998754

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=95.02  E-value=1.1  Score=41.12  Aligned_cols=123  Identities=16%  Similarity=0.235  Sum_probs=74.9

Q ss_pred             eEEEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCce----------eEEEEecCCCCCC-----cEEEE-E
Q 018497           95 LDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRY----------LGFGVNSVSGHLD-----DFKVV-Y  158 (355)
Q Consensus        95 ~~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~----------~~~g~d~~~~~~~-----~ykvv-y  158 (355)
                      ..+.+..+.-|+..+   ...+..|+++.|+....+|.+......          ++|...+......     .|.++ |
T Consensus        69 ~~F~al~gskIv~~d---~~~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~  145 (342)
T PF07893_consen   69 MDFFALHGSKIVAVD---QSGRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVY  145 (342)
T ss_pred             eEEEEecCCeEEEEc---CCCCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecc
Confidence            344444344444444   356799999999999999987654321          3333222210011     56766 6


Q ss_pred             E--------cCCCceeEeccCCCceeee------ccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe
Q 018497          159 S--------LRSNSWKNIAYGFPRSIEI------NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV  224 (355)
Q Consensus       159 s--------s~t~~W~~~~~~~p~~~~~------~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i  224 (355)
                      +        .++.+|+.++ .+|+....      ....   +|+ +|.--|+....      ....-.+||+.+.+|+..
T Consensus       146 ~~~~~~~~~~~~w~W~~LP-~PPf~~~~~~~~~~i~sY---avv-~g~~I~vS~~~------~~~GTysfDt~~~~W~~~  214 (342)
T PF07893_consen  146 RPPPDDPSPEESWSWRSLP-PPPFVRDRRYSDYRITSY---AVV-DGRTIFVSVNG------RRWGTYSFDTESHEWRKH  214 (342)
T ss_pred             ccccccccCCCcceEEcCC-CCCccccCCcccceEEEE---EEe-cCCeEEEEecC------CceEEEEEEcCCcceeec
Confidence            5        2345888888 66654432      1222   445 88888886654      013689999999999998


Q ss_pred             ---cCCCCCC
Q 018497          225 ---MMPYDLS  231 (355)
Q Consensus       225 ---~lP~~~~  231 (355)
                         .|||...
T Consensus       215 GdW~LPF~G~  224 (342)
T PF07893_consen  215 GDWMLPFHGQ  224 (342)
T ss_pred             cceecCcCCc
Confidence               7886443

>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]

Probab=94.78  E-value=2.4  Score=36.48  Aligned_cols=182  Identities=16%  Similarity=0.187  Sum_probs=106.2

Q ss_pred             eEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcEEEE-EEcC----CCceeEeccCCCceeeeccccccceeEeC
Q 018497          116 LIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVV-YSLR----SNSWKNIAYGFPRSIEINRSHINSSVFLN  190 (355)
Q Consensus       116 ~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykvv-yss~----t~~W~~~~~~~p~~~~~~~~~~~~~v~~~  190 (355)
                      .....++-.|.|.+=|.+...+.+.--.++.       ..++ |.+.    .+.|...- .+|..+....     -|+.|
T Consensus        11 ~~~~~~~~~GsWmrDpl~~~~r~~~~~~~~~-------~~l~E~~~~~~~~~~~~~~~~-~lp~~~~gTg-----~VVyn   77 (249)
T KOG3545|consen   11 TVKTAGPRFGAWMRDPLPADDRIYVMNYFDG-------LMLTEYTNLEDFKRGRKAEKY-RLPYSWDGTG-----HVVYN   77 (249)
T ss_pred             EEEeeccccceeecCCCcccCceEEeccccC-------ceEEEeccHHHhhccCcceEE-eCCCCccccc-----eEEEc
Confidence            3444555668888777666443332222222       2333 4442    35666666 6777776554     79999


Q ss_pred             ceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCC---------CCceEEEEECCeEEEEEecCCCCccEE
Q 018497          191 GSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTD---------DADKYLNVFDGYLCVFATIPNNTFRSY  260 (355)
Q Consensus       191 G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~---------~~~~~L~~~~G~L~~v~~~~~~~~~~l  260 (355)
                      |.+|+-....        ..|+.||++++.- ....+| .....         ...+.+++-+..|.++....+ ....+
T Consensus        78 Gs~yynk~~t--------~~ivky~l~~~~~~~~~~lp-~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~-~~g~i  147 (249)
T KOG3545|consen   78 GSLYYNKAGT--------RNIIKYDLETRTVAGSAALP-YAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPE-NAGTI  147 (249)
T ss_pred             ceEEeeccCC--------cceEEEEeecceeeeeeecc-ccccCCCcccccCCCccccceecccceeEEecccc-cCCcE
Confidence            9999987654        6899999998543 333566 43311         134678888888988887655 23567


Q ss_pred             EEEEeccC--CCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEee-CCce-EE-EEEeCCCCeEEEEEEe
Q 018497          261 ELWVMKEY--GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR-HGGY-GL-LVYNPHSDTFKCIGVH  327 (355)
Q Consensus       261 ~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~-~l-~~yd~~t~~~~~v~~~  327 (355)
                      .|-.|+..  ..+..|.--.  +...   .--++...|.+|.+  .. .... .+ +.||..+++-+.+.+.
T Consensus       148 v~skLdp~tl~~e~tW~T~~--~k~~---~~~aF~iCGvLY~v--~S~~~~~~~i~yaydt~~~~~~~~~ip  212 (249)
T KOG3545|consen  148 VLSKLDPETLEVERTWNTTL--PKRS---AGNAFMICGVLYVV--HSYNCTHTQISYAYDTTTGTQERIDLP  212 (249)
T ss_pred             EeeccCHHHhheeeeecccc--CCCC---cCceEEEeeeeEEE--eccccCCceEEEEEEcCCCceeccccc
Confidence            67788763  2335564321  1111   01223334666666  31 1111 23 6899999999887654

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa

Probab=94.21  E-value=0.43  Score=37.15  Aligned_cols=76  Identities=14%  Similarity=0.197  Sum_probs=54.1

Q ss_pred             cEEEEEEcCCc--eeeEecCCCCCCCC-----------CCceEEEEECCeEEEEEecCC------CCccEEEEEEeccC-
Q 018497          209 WLIVSFDFAKE--IFQTVMMPYDLSTD-----------DADKYLNVFDGYLCVFATIPN------NTFRSYELWVMKEY-  268 (355)
Q Consensus       209 ~~Il~fD~~~~--~~~~i~lP~~~~~~-----------~~~~~L~~~~G~L~~v~~~~~------~~~~~l~iW~l~~~-  268 (355)
                      .+|+.+|+-.+  .++.|+|| .....           ...-.++..+|+|.+|.....      ....++.+|.|... 
T Consensus         6 ~GIL~CD~~~~~p~l~~vpLP-~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~   84 (131)
T PF07762_consen    6 RGILFCDVFDDSPVLRFVPLP-PPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPE   84 (131)
T ss_pred             CCEEEEECCCCCccEEEEeCC-CccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCC
Confidence            37899998765  66778888 54311           123457778999999987643      13468999999974 


Q ss_pred             CCCCCeEEEEEecCCCc
Q 018497          269 GLTESWTKLYTIEKPQR  285 (355)
Q Consensus       269 ~~~~~W~~~~~i~~~~~  285 (355)
                      ....+|.+-++++...+
T Consensus        85 ~~~~~W~~d~~v~~~di  101 (131)
T PF07762_consen   85 GSSWEWKKDCEVDLSDI  101 (131)
T ss_pred             CCCCCEEEeEEEEhhhc
Confidence            23578999999887664

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=93.41  E-value=3.3  Score=38.11  Aligned_cols=107  Identities=17%  Similarity=0.231  Sum_probs=61.4

Q ss_pred             EEEEEEcCCceeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCcc------EEEEEEecc----CCCCCCeEEEEE
Q 018497          210 LIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFR------SYELWVMKE----YGLTESWTKLYT  279 (355)
Q Consensus       210 ~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~------~l~iW~l~~----~~~~~~W~~~~~  279 (355)
                      .++.||+++......  | ...........+..+|+||+..........      .+++-....    ......|.-.. 
T Consensus        87 ~t~vyDt~t~av~~~--P-~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~-  162 (342)
T PF07893_consen   87 RTLVYDTDTRAVATG--P-RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS-  162 (342)
T ss_pred             CeEEEECCCCeEecc--C-CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-
Confidence            589999999887754  4 322222334555668889999876431111      555443331    11223444332 


Q ss_pred             ecCCCc---e------eEeEEEeeCC-cEEEEEEeeCCc-eEEEEEeCCCCeEEEE
Q 018497          280 IEKPQR---I------WWPLGFTERG-KIFIRGECRHGG-YGLLVYNPHSDTFKCI  324 (355)
Q Consensus       280 i~~~~~---~------~~~~~~~~~g-~i~~~~~~~~~~-~~l~~yd~~t~~~~~v  324 (355)
                      ++.+++   .      +..-++. +| .|++.  . .+. ...+.||.++.+|+++
T Consensus       163 LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS--~-~~~~~GTysfDt~~~~W~~~  214 (342)
T PF07893_consen  163 LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVS--V-NGRRWGTYSFDTESHEWRKH  214 (342)
T ss_pred             CCCCCccccCCcccceEEEEEEe-cCCeEEEE--e-cCCceEEEEEEcCCcceeec
Confidence            444444   1      4445555 56 67775  3 322 1389999999999988

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=93.40  E-value=6.9  Score=36.67  Aligned_cols=106  Identities=16%  Similarity=0.171  Sum_probs=58.4

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCc--eeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEE
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELW  263 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~--~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW  263 (355)
                      ++..+|.+|.....+         .+.++|+.+.  .|+. ++. ..      ..++..+|+|++.....     .+.  
T Consensus       252 P~v~~~~vy~~~~~g---------~l~ald~~tG~~~W~~-~~~-~~------~~~~~~~~~vy~~~~~g-----~l~--  307 (394)
T PRK11138        252 PVVVGGVVYALAYNG---------NLVALDLRSGQIVWKR-EYG-SV------NDFAVDGGRIYLVDQND-----RVY--  307 (394)
T ss_pred             cEEECCEEEEEEcCC---------eEEEEECCCCCEEEee-cCC-Cc------cCcEEECCEEEEEcCCC-----eEE--
Confidence            788899999877654         8999999865  4543 222 11      12344566776655332     222  


Q ss_pred             EeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497          264 VMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC  323 (355)
Q Consensus       264 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~  323 (355)
                      .++....+..|.... ..... ...|+.  .+|.||+.  . .++ .++.+|.++++...
T Consensus       308 ald~~tG~~~W~~~~-~~~~~-~~sp~v--~~g~l~v~--~-~~G-~l~~ld~~tG~~~~  359 (394)
T PRK11138        308 ALDTRGGVELWSQSD-LLHRL-LTAPVL--YNGYLVVG--D-SEG-YLHWINREDGRFVA  359 (394)
T ss_pred             EEECCCCcEEEcccc-cCCCc-ccCCEE--ECCEEEEE--e-CCC-EEEEEECCCCCEEE
Confidence            222211223454311 00000 122332  35678777  5 667 49999999988643

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=93.26  E-value=7.3  Score=36.52  Aligned_cols=183  Identities=13%  Similarity=0.112  Sum_probs=91.7

Q ss_pred             eeCceEEEeecCCCCceEEEEcCCcccEEe---cCCCCCC-Cce-eEEEEecCCCCCCcEEEE-EEcCCC--ceeEeccC
Q 018497          100 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMT---LPRPSLN-PRY-LGFGVNSVSGHLDDFKVV-YSLRSN--SWKNIAYG  171 (355)
Q Consensus       100 s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~---LP~~~~~-~~~-~~~g~d~~~~~~~~ykvv-yss~t~--~W~~~~~~  171 (355)
                      ..+|.|.+..   ..+.++.+|+.|++.+.   ++..... +.. -+..+-.    +.+-++. +|.+++  .|+.-. .
T Consensus       118 v~~~~v~v~~---~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~----~~~g~l~ald~~tG~~~W~~~~-~  189 (394)
T PRK11138        118 VAGGKVYIGS---EKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVH----TSNGMLQALNESDGAVKWTVNL-D  189 (394)
T ss_pred             EECCEEEEEc---CCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEE----CCCCEEEEEEccCCCEeeeecC-C
Confidence            3466766655   45678888999876543   2221111 100 0001111    1111333 787776  688654 2


Q ss_pred             CCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCce--eeE-ecCCCCCCCC-----CCceEEEEEC
Q 018497          172 FPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQT-VMMPYDLSTD-----DADKYLNVFD  243 (355)
Q Consensus       172 ~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~--~~~-i~lP~~~~~~-----~~~~~L~~~~  243 (355)
                      .|.........   ++..+|.+|+...++         .+.++|..+.+  |+. +..| .....     .....-+..+
T Consensus       190 ~~~~~~~~~~s---P~v~~~~v~~~~~~g---------~v~a~d~~~G~~~W~~~~~~~-~~~~~~~~~~~~~~sP~v~~  256 (394)
T PRK11138        190 VPSLTLRGESA---PATAFGGAIVGGDNG---------RVSAVLMEQGQLIWQQRISQP-TGATEIDRLVDVDTTPVVVG  256 (394)
T ss_pred             CCcccccCCCC---CEEECCEEEEEcCCC---------EEEEEEccCChhhheeccccC-CCccchhcccccCCCcEEEC
Confidence            22111111122   677888888866554         79999988664  543 2223 21100     0011223457


Q ss_pred             CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497          244 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF  321 (355)
Q Consensus       244 G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~  321 (355)
                      |.|++.....     .+  ..++-...+..|....  ...   ..+  +..+|.||+.  . .++ .++.+|.++++.
T Consensus       257 ~~vy~~~~~g-----~l--~ald~~tG~~~W~~~~--~~~---~~~--~~~~~~vy~~--~-~~g-~l~ald~~tG~~  316 (394)
T PRK11138        257 GVVYALAYNG-----NL--VALDLRSGQIVWKREY--GSV---NDF--AVDGGRIYLV--D-QND-RVYALDTRGGVE  316 (394)
T ss_pred             CEEEEEEcCC-----eE--EEEECCCCCEEEeecC--CCc---cCc--EEECCEEEEE--c-CCC-eEEEEECCCCcE
Confidence            7777765422     33  3343222245676532  110   112  2245678887  6 566 499999998864

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=93.04  E-value=3  Score=35.82  Aligned_cols=124  Identities=11%  Similarity=0.128  Sum_probs=67.3

Q ss_pred             EeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCC---CCCCceEEEE--ECCeEEEEEecC---CCCccE
Q 018497          188 FLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS---TDDADKYLNV--FDGYLCVFATIP---NNTFRS  259 (355)
Q Consensus       188 ~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~---~~~~~~~L~~--~~G~L~~v~~~~---~~~~~~  259 (355)
                      .+||.+ .+...         ..+..+|+.|.++..++.| ...   .......++-  ..+.--++....   ......
T Consensus         3 sCnGLl-c~~~~---------~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~   71 (230)
T TIGR01640         3 PCDGLI-CFSYG---------KRLVVWNPSTGQSRWLPTP-KSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSE   71 (230)
T ss_pred             ccceEE-EEecC---------CcEEEECCCCCCEEecCCC-CCcccccccceEEEeecccCCcEEEEEEEeecCCCCCcc
Confidence            468888 33322         3799999999999998765 331   1111122221  113222222211   111246


Q ss_pred             EEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeC-Cce-EEEEEeCCCCeEEE-EEEe
Q 018497          260 YELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH-GGY-GLLVYNPHSDTFKC-IGVH  327 (355)
Q Consensus       260 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~-~l~~yd~~t~~~~~-v~~~  327 (355)
                      .+|..+..    .+|......+........ ++.-+|.++....... ... .++.||+++++++. +..+
T Consensus        72 ~~Vys~~~----~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P  137 (230)
T TIGR01640        72 HQVYTLGS----NSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP  137 (230)
T ss_pred             EEEEEeCC----CCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence            67777764    479987632221111222 5556788888732111 111 59999999999995 6554

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=92.78  E-value=0.25  Score=30.88  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=24.2

Q ss_pred             eeEe-CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCC
Q 018497          186 SVFL-NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMP  227 (355)
Q Consensus       186 ~v~~-~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP  227 (355)
                      ++.+ ++.+|.+++..  ........+..||+.+++|+.+ ++|
T Consensus         7 ~~~~~~~~i~v~GG~~--~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    7 AVSIGDNSIYVFGGRD--SSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             EEEE-TTEEEEE--EE--E-TEE---EEEEETTTTEEEE--SS-
T ss_pred             EEEEeCCeEEEECCCC--CCCcccCCEEEEECCCCEEEECCCCC
Confidence            5555 68999988776  1122345689999999999998 555

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=92.52  E-value=2.9  Score=36.27  Aligned_cols=165  Identities=14%  Similarity=0.164  Sum_probs=90.4

Q ss_pred             EEEEEEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCC----ceeeEecCCCC
Q 018497          154 FKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAK----EIFQTVMMPYD  229 (355)
Q Consensus       154 ykvvyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~----~~~~~i~lP~~  229 (355)
                      +.++||..++++|.+.  +.....+...    .+.-||.+.-.++..     .....|-.|++.+    ..|.+.  + .
T Consensus        47 ~s~~yD~~tn~~rpl~--v~td~FCSgg----~~L~dG~ll~tGG~~-----~G~~~ir~~~p~~~~~~~~w~e~--~-~  112 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLT--VQTDTFCSGG----AFLPDGRLLQTGGDN-----DGNKAIRIFTPCTSDGTCDWTES--P-N  112 (243)
T ss_pred             EEEEEecCCCcEEecc--CCCCCcccCc----CCCCCCCEEEeCCCC-----ccccceEEEecCCCCCCCCceEC--c-c
Confidence            5566999999999877  2332222221    556688887665553     2345677888765    556543  2 2


Q ss_pred             CCC-CCCceEEEEE-CCeEEEEEecCCCCccEEEEEEeccCC-CCCCeEEEEEec-CCCc-eeEeEEEeeCCcEEEEEEe
Q 018497          230 LST-DDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYG-LTESWTKLYTIE-KPQR-IWWPLGFTERGKIFIRGEC  304 (355)
Q Consensus       230 ~~~-~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~-~~~~-~~~~~~~~~~g~i~~~~~~  304 (355)
                      .+. .++......+ +|++.++++...   ...+.|=-+... ....|....... .... .+-.+.+..+|+||+.  .
T Consensus       113 ~m~~~RWYpT~~~L~DG~vlIvGG~~~---~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~--a  187 (243)
T PF07250_consen  113 DMQSGRWYPTATTLPDGRVLIVGGSNN---PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIF--A  187 (243)
T ss_pred             cccCCCccccceECCCCCEEEEeCcCC---CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEE--E
Confidence            222 1244444444 599999998765   466655432211 111222111111 1111 3444666789999998  5


Q ss_pred             eCCceEEEEEeCCCCeE-EEE-EEecCcceeEEeeeeccee
Q 018497          305 RHGGYGLLVYNPHSDTF-KCI-GVHLPYYAIQVLNFVESII  343 (355)
Q Consensus       305 ~~~~~~l~~yd~~t~~~-~~v-~~~~~~~~~~~~~y~~Slv  343 (355)
                       ...  -..||.+++++ +.+ .+.+.   ...++...|-|
T Consensus       188 -n~~--s~i~d~~~n~v~~~lP~lPg~---~R~YP~sgssv  222 (243)
T PF07250_consen  188 -NRG--SIIYDYKTNTVVRTLPDLPGG---PRNYPASGSSV  222 (243)
T ss_pred             -cCC--cEEEeCCCCeEEeeCCCCCCC---ceecCCCcceE
Confidence             333  57889999976 444 33332   33444444443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.90  E-value=4  Score=38.25  Aligned_cols=133  Identities=15%  Similarity=0.119  Sum_probs=80.8

Q ss_pred             eEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEe---cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEE
Q 018497          187 VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTV---MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYEL  262 (355)
Q Consensus       187 v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i---~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~i  262 (355)
                      +..||.|...+...        ..+-.||..+... +.+   ..| .     .......-++.+.+.+.++    ....+
T Consensus        76 fR~DG~LlaaGD~s--------G~V~vfD~k~r~iLR~~~ah~ap-v-----~~~~f~~~d~t~l~s~sDd----~v~k~  137 (487)
T KOG0310|consen   76 FRSDGRLLAAGDES--------GHVKVFDMKSRVILRQLYAHQAP-V-----HVTKFSPQDNTMLVSGSDD----KVVKY  137 (487)
T ss_pred             eecCCeEEEccCCc--------CcEEEeccccHHHHHHHhhccCc-e-----eEEEecccCCeEEEecCCC----ceEEE
Confidence            34579999887665        6789999655222 222   122 1     2233444566776666655    48899


Q ss_pred             EEeccCCCCCCeEEEEEecCCCceeEeEEEeeC-CcEEEEEEeeCCceEEEEEeCCCCeEEEEEEecCcceeEEeeeecc
Q 018497          263 WVMKEYGLTESWTKLYTIEKPQRIWWPLGFTER-GKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVES  341 (355)
Q Consensus       263 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~-g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~~~y~~S  341 (355)
                      |.+...   .  . +..+.-...+.+...+... +-|++.  ..+|+ .+-.||.++.+-+.++++..       .-+|+
T Consensus       138 ~d~s~a---~--v-~~~l~~htDYVR~g~~~~~~~hivvt--GsYDg-~vrl~DtR~~~~~v~elnhg-------~pVe~  201 (487)
T KOG0310|consen  138 WDLSTA---Y--V-QAELSGHTDYVRCGDISPANDHIVVT--GSYDG-KVRLWDTRSLTSRVVELNHG-------CPVES  201 (487)
T ss_pred             EEcCCc---E--E-EEEecCCcceeEeeccccCCCeEEEe--cCCCc-eEEEEEeccCCceeEEecCC-------Cceee
Confidence            999862   2  3 4555544446666666543 458888  54788 49999999997444455421       23566


Q ss_pred             eeccCCCCcccc
Q 018497          342 IIEPVSQSLILS  353 (355)
Q Consensus       342 lv~~~~~~~~~~  353 (355)
                      .+-++++++|.+
T Consensus       202 vl~lpsgs~ias  213 (487)
T KOG0310|consen  202 VLALPSGSLIAS  213 (487)
T ss_pred             EEEcCCCCEEEE
Confidence            666666666543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=91.82  E-value=7.4  Score=33.15  Aligned_cols=182  Identities=14%  Similarity=0.125  Sum_probs=91.6

Q ss_pred             eCceEEEeecCCCCceEEEEcCCcccEEecCCCCCC---C-ce----eEEEEecCCCCCCcEEEE-EEcCCC--ceeE-e
Q 018497          101 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLN---P-RY----LGFGVNSVSGHLDDFKVV-YSLRSN--SWKN-I  168 (355)
Q Consensus       101 ~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~---~-~~----~~~g~d~~~~~~~~ykvv-yss~t~--~W~~-~  168 (355)
                      .+|.++...   ....++.+|+.|++...--..+..   . ..    +.++.  .   .+  .+. ++.+++  .|+. .
T Consensus        35 ~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~--~---~~--~l~~~d~~tG~~~W~~~~  104 (238)
T PF13360_consen   35 DGGRVYVAS---GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGT--S---DG--SLYALDAKTGKVLWSIYL  104 (238)
T ss_dssp             ETTEEEEEE---TTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEE--T---TS--EEEEEETTTSCEEEEEEE
T ss_pred             eCCEEEEEc---CCCEEEEEECCCCCEEEEeeccccccceeeeccccccccc--c---ee--eeEecccCCcceeeeecc
Confidence            788887775   578899999999887532222221   1 00    11111  1   22  333 786665  8984 4


Q ss_pred             ccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee--eE-ecCCCCCCC-----CCCceEEE
Q 018497          169 AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF--QT-VMMPYDLST-----DDADKYLN  240 (355)
Q Consensus       169 ~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~--~~-i~lP~~~~~-----~~~~~~L~  240 (355)
                      . ..+.........   ..+.++.+|......         .|.++|+++++-  .. +..| ....     ......+.
T Consensus       105 ~-~~~~~~~~~~~~---~~~~~~~~~~~~~~g---------~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~  170 (238)
T PF13360_consen  105 T-SSPPAGVRSSSS---PAVDGDRLYVGTSSG---------KLVALDPKTGKLLWKYPVGEP-RGSSPISSFSDINGSPV  170 (238)
T ss_dssp             --SSCTCSTB--SE---EEEETTEEEEEETCS---------EEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEE
T ss_pred             c-cccccccccccC---ceEecCEEEEEeccC---------cEEEEecCCCcEEEEeecCCC-CCCcceeeecccccceE
Confidence            4 222221111111   344466777766444         899999987755  33 2333 2111     00123444


Q ss_pred             EECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 018497          241 VFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT  320 (355)
Q Consensus       241 ~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~  320 (355)
                      ..+|.+++.....    ..+.+ -++.  .+..|...  +.  .  ........++.+|+.  . .++ .++.+|++|++
T Consensus       171 ~~~~~v~~~~~~g----~~~~~-d~~t--g~~~w~~~--~~--~--~~~~~~~~~~~l~~~--~-~~~-~l~~~d~~tG~  233 (238)
T PF13360_consen  171 ISDGRVYVSSGDG----RVVAV-DLAT--GEKLWSKP--IS--G--IYSLPSVDGGTLYVT--S-SDG-RLYALDLKTGK  233 (238)
T ss_dssp             CCTTEEEEECCTS----SEEEE-ETTT--TEEEEEEC--SS-----ECECEECCCTEEEEE--E-TTT-EEEEEETTTTE
T ss_pred             EECCEEEEEcCCC----eEEEE-ECCC--CCEEEEec--CC--C--ccCCceeeCCEEEEE--e-CCC-EEEEEECCCCC
Confidence            4567665544432    22333 3322  12236221  21  1  111122344556666  4 566 49999999999


Q ss_pred             EEE
Q 018497          321 FKC  323 (355)
Q Consensus       321 ~~~  323 (355)
                      ...
T Consensus       234 ~~W  236 (238)
T PF13360_consen  234 VVW  236 (238)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            765

...

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=91.15  E-value=2.7  Score=38.18  Aligned_cols=121  Identities=14%  Similarity=0.154  Sum_probs=70.1

Q ss_pred             eeEe--CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCC-CC--CCCCC---ceEEEEE---CCeEEEEEecC
Q 018497          186 SVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPY-DL--STDDA---DKYLNVF---DGYLCVFATIP  253 (355)
Q Consensus       186 ~v~~--~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~-~~--~~~~~---~~~L~~~---~G~L~~v~~~~  253 (355)
                      +++.  +|.+||+..++         .|...|+..+.-... +.++ ..  ..+++   ...+...   .|+||+.....
T Consensus       189 ~~~~~~~~~~~F~Sy~G---------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g  259 (342)
T PF06433_consen  189 PAYSRDGGRLYFVSYEG---------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG  259 (342)
T ss_dssp             -EEETTTTEEEEEBTTS---------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE-
T ss_pred             cceECCCCeEEEEecCC---------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC
Confidence            4444  36899988877         899999988865544 2221 11  11221   1223332   47999876543


Q ss_pred             CC---CccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCc--EEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497          254 NN---TFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK--IFIRGECRHGGYGLLVYNPHSDTFKC  323 (355)
Q Consensus       254 ~~---~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~--i~~~~~~~~~~~~l~~yd~~t~~~~~  323 (355)
                      ..   ....-+||+++-.    .=.++.+|++.. ....++++.+++  +|-.  ...++ .|++||..|++...
T Consensus       260 ~~gsHKdpgteVWv~D~~----t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~--~~~~~-~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  260 GEGSHKDPGTEVWVYDLK----THKRVARIPLEH-PIDSIAVSQDDKPLLYAL--SAGDG-TLDVYDAATGKLVR  326 (342)
T ss_dssp             -TT-TTS-EEEEEEEETT----TTEEEEEEEEEE-EESEEEEESSSS-EEEEE--ETTTT-EEEEEETTT--EEE
T ss_pred             CCCCccCCceEEEEEECC----CCeEEEEEeCCC-ccceEEEccCCCcEEEEE--cCCCC-eEEEEeCcCCcEEe
Confidence            21   3467899999862    226677887654 233577887774  4444  42345 59999999997643

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.14  E-value=0.72  Score=41.63  Aligned_cols=118  Identities=17%  Similarity=0.217  Sum_probs=76.8

Q ss_pred             EEcCCCceeEeccCCCceeeeccccccceeEeCc-eEEEEEeeecc-----------CC--------------------C
Q 018497          158 YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNG-SVHWCARFSCY-----------HD--------------------N  205 (355)
Q Consensus       158 yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~-----------~~--------------------~  205 (355)
                      |+..+++|..++...|.......     ++..++ .+|+..+-...           .+                    -
T Consensus       118 y~p~~nsW~kl~t~sP~gl~G~~-----~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy  192 (381)
T COG3055         118 YDPSTNSWHKLDTRSPTGLVGAS-----TFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDY  192 (381)
T ss_pred             ecCCCChhheeccccccccccce-----eEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHh
Confidence            99999999999877777643322     566666 88887654320           00                    1


Q ss_pred             CCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCC
Q 018497          206 SCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKP  283 (355)
Q Consensus       206 ~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~  283 (355)
                      ..-..+++||+.+++|+.. ..|+-..   .....+.-+++|.++...-...-.+.++|+.+-.+++..|.+.-.++.+
T Consensus       193 ~~n~ev~sy~p~~n~W~~~G~~pf~~~---aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~  268 (381)
T COG3055         193 FFNKEVLSYDPSTNQWRNLGENPFYGN---AGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAP  268 (381)
T ss_pred             cccccccccccccchhhhcCcCcccCc---cCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCC
Confidence            1124589999999999998 5774222   1223444456788888765433456677777655456789998666544

>smart00612 Kelch Kelch domain

Probab=91.06  E-value=0.69  Score=28.10  Aligned_cols=23  Identities=13%  Similarity=0.157  Sum_probs=18.2

Q ss_pred             CcEEEEEEcCCceeeEe-cCCCCCC
Q 018497          208 PWLIVSFDFAKEIFQTV-MMPYDLS  231 (355)
Q Consensus       208 ~~~Il~fD~~~~~~~~i-~lP~~~~  231 (355)
                      ...+..||+.+++|+.+ ++| ..+
T Consensus        14 ~~~v~~yd~~~~~W~~~~~~~-~~r   37 (47)
T smart00612       14 LKSVEVYDPETNKWTPLPSMP-TPR   37 (47)
T ss_pred             eeeEEEECCCCCeEccCCCCC-Ccc
Confidence            45789999999999988 666 443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=89.78  E-value=12  Score=32.24  Aligned_cols=111  Identities=15%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             eeEe--CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEE-ECCeEEEEEecCCCCccEEEE
Q 018497          186 SVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNV-FDGYLCVFATIPNNTFRSYEL  262 (355)
Q Consensus       186 ~v~~--~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~-~~G~L~~v~~~~~~~~~~l~i  262 (355)
                      +++.  +|.|||.....        ..|..+|+.+++.+.+.+| . .    ...... -+|+|+++...      .+.+
T Consensus         5 p~~d~~~g~l~~~D~~~--------~~i~~~~~~~~~~~~~~~~-~-~----~G~~~~~~~g~l~v~~~~------~~~~   64 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPG--------GRIYRVDPDTGEVEVIDLP-G-P----NGMAFDRPDGRLYVADSG------GIAV   64 (246)
T ss_dssp             EEEETTTTEEEEEETTT--------TEEEEEETTTTEEEEEESS-S-E----EEEEEECTTSEEEEEETT------CEEE
T ss_pred             eEEECCCCEEEEEEcCC--------CEEEEEECCCCeEEEEecC-C-C----ceEEEEccCCEEEEEEcC------ceEE
Confidence            4555  69999997665        6999999999999998888 4 1    122223 35777776542      2222


Q ss_pred             EEeccCCCCCCeEEEEEecCC--Cc-eeEeEEEeeCCcEEEEEEeeCC--------ceEEEEEeCCCCeEEEE
Q 018497          263 WVMKEYGLTESWTKLYTIEKP--QR-IWWPLGFTERGKIFIRGECRHG--------GYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       263 W~l~~~~~~~~W~~~~~i~~~--~~-~~~~~~~~~~g~i~~~~~~~~~--------~~~l~~yd~~t~~~~~v  324 (355)
                      .  +.  ...+++........  .. ...-+++..+|.+|+.  ....        + .++.+++. ++.+.+
T Consensus        65 ~--d~--~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t--~~~~~~~~~~~~g-~v~~~~~~-~~~~~~  129 (246)
T PF08450_consen   65 V--DP--DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVT--DSGGGGASGIDPG-SVYRIDPD-GKVTVV  129 (246)
T ss_dssp             E--ET--TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEE--EECCBCTTCGGSE-EEEEEETT-SEEEEE
T ss_pred             E--ec--CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEE--ecCCCcccccccc-ceEEECCC-CeEEEE
Confidence            2  21  13567777776422  21 2333667778888887  3111        3 48999999 666555

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=89.36  E-value=18  Score=33.53  Aligned_cols=181  Identities=13%  Similarity=0.116  Sum_probs=88.3

Q ss_pred             eCceEEEeecCCCCceEEEEcCCcccEEecCCCCCC----Cce--eEEEEecCCCCCCcEEEE-EEcCCC--ceeEeccC
Q 018497          101 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLN----PRY--LGFGVNSVSGHLDDFKVV-YSLRSN--SWKNIAYG  171 (355)
Q Consensus       101 ~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~----~~~--~~~g~d~~~~~~~~ykvv-yss~t~--~W~~~~~~  171 (355)
                      .+|.+.+..   .+..++.+|+.|++.+.--.....    +..  -.+.....   .+  ++. +|.+++  .|+.-. .
T Consensus       104 ~~~~v~v~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~---~g--~l~a~d~~tG~~~W~~~~-~  174 (377)
T TIGR03300       104 DGGLVFVGT---EKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTN---DG--RLTALDAATGERLWTYSR-V  174 (377)
T ss_pred             cCCEEEEEc---CCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECC---CC--eEEEEEcCCCceeeEEcc-C
Confidence            466666655   456788888888765431111111    000  00001111   11  222 777665  687544 2


Q ss_pred             CCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCc--eeeE-ecCCCCCCCC-----CCceEEEEEC
Q 018497          172 FPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQT-VMMPYDLSTD-----DADKYLNVFD  243 (355)
Q Consensus       172 ~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~--~~~~-i~lP~~~~~~-----~~~~~L~~~~  243 (355)
                      .+.........   ++..+|.+|.-...         ..+.++|+.++  .|+. +..| .....     .........+
T Consensus       175 ~~~~~~~~~~s---p~~~~~~v~~~~~~---------g~v~ald~~tG~~~W~~~~~~~-~g~~~~~~~~~~~~~p~~~~  241 (377)
T TIGR03300       175 TPALTLRGSAS---PVIADGGVLVGFAG---------GKLVALDLQTGQPLWEQRVALP-KGRTELERLVDVDGDPVVDG  241 (377)
T ss_pred             CCceeecCCCC---CEEECCEEEEECCC---------CEEEEEEccCCCEeeeeccccC-CCCCchhhhhccCCccEEEC
Confidence            22111111122   67788887765443         37999998765  4543 2223 11100     0011223346


Q ss_pred             CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497          244 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF  321 (355)
Q Consensus       244 G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~  321 (355)
                      |.+++....     ..+..+.++.  .+..|....    .. ...|.  ..++.||+.  . .++ .++.+|..+++.
T Consensus       242 ~~vy~~~~~-----g~l~a~d~~t--G~~~W~~~~----~~-~~~p~--~~~~~vyv~--~-~~G-~l~~~d~~tG~~  301 (377)
T TIGR03300       242 GQVYAVSYQ-----GRVAALDLRS--GRVLWKRDA----SS-YQGPA--VDDNRLYVT--D-ADG-VVVALDRRSGSE  301 (377)
T ss_pred             CEEEEEEcC-----CEEEEEECCC--CcEEEeecc----CC-ccCce--EeCCEEEEE--C-CCC-eEEEEECCCCcE
Confidence            777665542     2555555543  235576541    11 12222  235678777  5 566 499999988764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=89.09  E-value=3.5  Score=25.11  Aligned_cols=44  Identities=16%  Similarity=0.187  Sum_probs=32.2

Q ss_pred             ceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec
Q 018497          236 DKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE  281 (355)
Q Consensus       236 ~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~  281 (355)
                      ....+..+|+|+++++........-.+|.++-.  +..|..+..++
T Consensus         4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~mp   47 (47)
T PF01344_consen    4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPE--TNTWEELPPMP   47 (47)
T ss_dssp             SEEEEEETTEEEEEEEBESTSSBEEEEEEEETT--TTEEEEEEEES
T ss_pred             cCEEEEECCEEEEEeeecccCceeeeEEEEeCC--CCEEEEcCCCC
Confidence            457889999999999876533355567777653  46899987764

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=88.50  E-value=21  Score=33.19  Aligned_cols=210  Identities=12%  Similarity=0.086  Sum_probs=85.1

Q ss_pred             eeCc-eEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCc-E------EEE-EEcCCCceeEecc
Q 018497          100 SCNG-VLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDD-F------KVV-YSLRSNSWKNIAY  170 (355)
Q Consensus       100 s~~G-Ll~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~-y------kvv-yss~t~~W~~~~~  170 (355)
                      ..+| .|++.........++..|-.|++..+|-..+....+ +....+.   ++. |      .|. .+++|..=+.+- 
T Consensus        44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~---~~~~~Yv~~~~~l~~vdL~T~e~~~vy-  118 (386)
T PF14583_consen   44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPD---DRALYYVKNGRSLRRVDLDTLEERVVY-  118 (386)
T ss_dssp             -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TT---SSEEEEEETTTEEEEEETTT--EEEEE-
T ss_pred             CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecC---CCeEEEEECCCeEEEEECCcCcEEEEE-
Confidence            3445 355554334577899999999999999886543211 1111111   111 1      111 455555544444 


Q ss_pred             CCCceeeeccccccceeEeCceEEEEEeeec--c------------CCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCC
Q 018497          171 GFPRSIEINRSHINSSVFLNGSVHWCARFSC--Y------------HDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDA  235 (355)
Q Consensus       171 ~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~------------~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~  235 (355)
                      ..|..+......   .+--++..+.-.....  .            ........|+..|+.+++...+ .-. .-.   .
T Consensus       119 ~~p~~~~g~gt~---v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wl---g  191 (386)
T PF14583_consen  119 EVPDDWKGYGTW---VANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWL---G  191 (386)
T ss_dssp             E--TTEEEEEEE---EE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-E---E
T ss_pred             ECCcccccccce---eeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccc---c
Confidence            455444322111   2222344443221110  0            0134567899999999998887 322 111   1


Q ss_pred             ceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCC-cEEEEEEeeCC-ceEEEE
Q 018497          236 DKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHG-GYGLLV  313 (355)
Q Consensus       236 ~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~-~~~l~~  313 (355)
                      .+...-.+..|.+.+.......-.-+||.++..+. ..|.........  ...--....+| .|++....+.+ ...+..
T Consensus       192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~~~e--~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~  268 (386)
T PF14583_consen  192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRMEGE--SVGHEFWVPDGSTIWYDSYTPGGQDFWIAG  268 (386)
T ss_dssp             EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTE--EEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred             CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCCCCc--ccccccccCCCCEEEEEeecCCCCceEEEe
Confidence            12222233455555544322112347899997653 334443333221  22222234566 45554222122 126888


Q ss_pred             EeCCCCeEEEE
Q 018497          314 YNPHSDTFKCI  324 (355)
Q Consensus       314 yd~~t~~~~~v  324 (355)
                      ||++|.+-+.+
T Consensus       269 ~d~~t~~~~~~  279 (386)
T PF14583_consen  269 YDPDTGERRRL  279 (386)
T ss_dssp             E-TTT--EEEE
T ss_pred             eCCCCCCceEE
Confidence            99999877655

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=88.23  E-value=15  Score=31.20  Aligned_cols=113  Identities=12%  Similarity=0.097  Sum_probs=61.6

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeE-ecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEE
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWV  264 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~-i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~  264 (355)
                      .+.-+|.+|......         .|.++|..+++..- ..++ ....    ......+|++++...  +   .  .++.
T Consensus        32 ~~~~~~~v~~~~~~~---------~l~~~d~~tG~~~W~~~~~-~~~~----~~~~~~~~~v~v~~~--~---~--~l~~   90 (238)
T PF13360_consen   32 AVPDGGRVYVASGDG---------NLYALDAKTGKVLWRFDLP-GPIS----GAPVVDGGRVYVGTS--D---G--SLYA   90 (238)
T ss_dssp             EEEETTEEEEEETTS---------EEEEEETTTSEEEEEEECS-SCGG----SGEEEETTEEEEEET--T---S--EEEE
T ss_pred             EEEeCCEEEEEcCCC---------EEEEEECCCCCEEEEeecc-cccc----ceeeecccccccccc--e---e--eeEe
Confidence            345788888885554         89999987665422 2445 4331    113677788877662  1   2  4555


Q ss_pred             eccCCCCCCeEE-EEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497          265 MKEYGLTESWTK-LYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC  323 (355)
Q Consensus       265 l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~  323 (355)
                      ++....+..|.. ...-+.............++.+++.  . ..+ .++.+|+++++...
T Consensus        91 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~g-~l~~~d~~tG~~~w  146 (238)
T PF13360_consen   91 LDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVG--T-SSG-KLVALDPKTGKLLW  146 (238)
T ss_dssp             EETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEE--E-TCS-EEEEEETTTTEEEE
T ss_pred             cccCCcceeeeeccccccccccccccCceEecCEEEEE--e-ccC-cEEEEecCCCcEEE
Confidence            552223467874 3322222211111111223455555  4 466 49999999998744

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=86.94  E-value=15  Score=34.12  Aligned_cols=106  Identities=13%  Similarity=0.138  Sum_probs=56.0

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCce--eeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEE
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELW  263 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~--~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW  263 (355)
                      +++.+|.+|......         .+.+||..+++  |+. .++ ....    ...+..++.+++... +    ..+  +
T Consensus        61 p~v~~~~v~v~~~~g---------~v~a~d~~tG~~~W~~-~~~-~~~~----~~p~v~~~~v~v~~~-~----g~l--~  118 (377)
T TIGR03300        61 PAVAGGKVYAADADG---------TVVALDAETGKRLWRV-DLD-ERLS----GGVGADGGLVFVGTE-K----GEV--I  118 (377)
T ss_pred             eEEECCEEEEECCCC---------eEEEEEccCCcEeeee-cCC-CCcc----cceEEcCCEEEEEcC-C----CEE--E
Confidence            678899999877654         79999987554  432 444 3221    123344566654332 2    133  3


Q ss_pred             EeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 018497          264 VMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK  322 (355)
Q Consensus       264 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~  322 (355)
                      .++....+..|....  +... ...|+  ..++.+++.  . .++ .++.+|+++++..
T Consensus       119 ald~~tG~~~W~~~~--~~~~-~~~p~--v~~~~v~v~--~-~~g-~l~a~d~~tG~~~  168 (377)
T TIGR03300       119 ALDAEDGKELWRAKL--SSEV-LSPPL--VANGLVVVR--T-NDG-RLTALDAATGERL  168 (377)
T ss_pred             EEECCCCcEeeeecc--Ccee-ecCCE--EECCEEEEE--C-CCC-eEEEEEcCCCcee
Confidence            333211234565421  1110 11122  234566666  4 566 4999999887753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=86.76  E-value=28  Score=33.41  Aligned_cols=195  Identities=14%  Similarity=0.227  Sum_probs=94.2

Q ss_pred             ceEEEEcCCcccEEecCCCCCC--Cce--eEEEEecCCCCCCcEEEE-------------EEcCCCc--eeEeccCCCce
Q 018497          115 SLIYLWNPLIKKYMTLPRPSLN--PRY--LGFGVNSVSGHLDDFKVV-------------YSLRSNS--WKNIAYGFPRS  175 (355)
Q Consensus       115 ~~~~V~NP~T~~~~~LP~~~~~--~~~--~~~g~d~~~~~~~~ykvv-------------yss~t~~--W~~~~~~~p~~  175 (355)
                      .++.|+|-+|+||. +|.....  +..  +||.+|     +...-|+             |.+...+  |+.+....|..
T Consensus        57 DELHvYNTatnqWf-~PavrGDiPpgcAA~Gfvcd-----GtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~n  130 (830)
T KOG4152|consen   57 DELHVYNTATNQWF-APAVRGDIPPGCAAFGFVCD-----GTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKN  130 (830)
T ss_pred             hhhhhhccccceee-cchhcCCCCCchhhcceEec-----CceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCC
Confidence            47899999999997 3332221  222  444444     3333333             6666554  55554233321


Q ss_pred             e-----eeccccccceeEeCceEEEEEeeec-cCC-------CCCCcEEEEEEcCCc--eeeEe----cCCCCCCCCCCc
Q 018497          176 I-----EINRSHINSSVFLNGSVHWCARFSC-YHD-------NSCPWLIVSFDFAKE--IFQTV----MMPYDLSTDDAD  236 (355)
Q Consensus       176 ~-----~~~~~~~~~~v~~~G~lyw~~~~~~-~~~-------~~~~~~Il~fD~~~~--~~~~i----~lP~~~~~~~~~  236 (355)
                      -     ....+    -+.++++.|.+++-.. +.+       -.+...|+-+-...+  -|...    .+| ..+++..-
T Consensus       131 G~pPCPRlGHS----Fsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P-~pRESHTA  205 (830)
T KOG4152|consen  131 GPPPCPRLGHS----FSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLP-PPRESHTA  205 (830)
T ss_pred             CCCCCCccCce----eEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCC-CCccccee
Confidence            1     11111    3456678888765431 000       112233444444333  23321    455 34433222


Q ss_pred             eEEEEEC---CeEEEEEecCCCCccEE-EEEEeccCCCCCCeEEEEEecCCCc--eeEeEEEeeCCcEEEEE-Ee-----
Q 018497          237 KYLNVFD---GYLCVFATIPNNTFRSY-ELWVMKEYGLTESWTKLYTIEKPQR--IWWPLGFTERGKIFIRG-EC-----  304 (355)
Q Consensus       237 ~~L~~~~---G~L~~v~~~~~~~~~~l-~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~~~~-~~-----  304 (355)
                      ..-++-+   -++++.++..+   .++ ++|.|+-.  .-.|.+-..-....+  ..+ .+....+++|+.| +.     
T Consensus       206 ViY~eKDs~~skmvvyGGM~G---~RLgDLW~Ldl~--Tl~W~kp~~~G~~PlPRSLH-sa~~IGnKMyvfGGWVPl~~~  279 (830)
T KOG4152|consen  206 VIYTEKDSKKSKMVVYGGMSG---CRLGDLWTLDLD--TLTWNKPSLSGVAPLPRSLH-SATTIGNKMYVFGGWVPLVMD  279 (830)
T ss_pred             EEEEeccCCcceEEEEccccc---ccccceeEEecc--eeecccccccCCCCCCcccc-cceeecceeEEecceeeeecc
Confidence            2222333   26777776655   344 69999863  467887432222221  111 1112223555541 10     


Q ss_pred             -----eC--Cce---EEEEEeCCCCeEEEEEE
Q 018497          305 -----RH--GGY---GLLVYNPHSDTFKCIGV  326 (355)
Q Consensus       305 -----~~--~~~---~l~~yd~~t~~~~~v~~  326 (355)
                           .+  +++   .+-+.|++|..|+.+..
T Consensus       280 ~~~~~~hekEWkCTssl~clNldt~~W~tl~~  311 (830)
T KOG4152|consen  280 DVKVATHEKEWKCTSSLACLNLDTMAWETLLM  311 (830)
T ss_pred             ccccccccceeeeccceeeeeecchheeeeee
Confidence                 01  122   68888999999988854

>PLN02772 guanylate kinase

Probab=85.88  E-value=5.3  Score=37.24  Aligned_cols=74  Identities=9%  Similarity=0.047  Sum_probs=51.6

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe----cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEE
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV----MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYE  261 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i----~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~  261 (355)
                      .+.++.++|.+++..  -+......+.+||..+.+|..-    .-| ..+.  .+-.++.-+++|.++.....   ..-+
T Consensus        30 av~igdk~yv~GG~~--d~~~~~~~v~i~D~~t~~W~~P~V~G~~P-~~r~--GhSa~v~~~~rilv~~~~~~---~~~~  101 (398)
T PLN02772         30 SVTIGDKTYVIGGNH--EGNTLSIGVQILDKITNNWVSPIVLGTGP-KPCK--GYSAVVLNKDRILVIKKGSA---PDDS  101 (398)
T ss_pred             eEEECCEEEEEcccC--CCccccceEEEEECCCCcEecccccCCCC-CCCC--cceEEEECCceEEEEeCCCC---Cccc
Confidence            789999999998764  1112456899999999999763    333 3332  12344455689999987655   4678


Q ss_pred             EEEecc
Q 018497          262 LWVMKE  267 (355)
Q Consensus       262 iW~l~~  267 (355)
                      ||.|+-
T Consensus       102 ~w~l~~  107 (398)
T PLN02772        102 IWFLEV  107 (398)
T ss_pred             eEEEEc
Confidence            999985

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=85.86  E-value=1.9  Score=26.76  Aligned_cols=31  Identities=16%  Similarity=0.422  Sum_probs=18.7

Q ss_pred             eeCCcEEEEE-EeeCCc---eEEEEEeCCCCeEEEE
Q 018497          293 TERGKIFIRG-ECRHGG---YGLLVYNPHSDTFKCI  324 (355)
Q Consensus       293 ~~~g~i~~~~-~~~~~~---~~l~~yd~~t~~~~~v  324 (355)
                      ..++.||+.| .. .++   +.++.||+++++|+++
T Consensus        10 ~~~~~i~v~GG~~-~~~~~~~d~~~~d~~~~~W~~~   44 (49)
T PF13418_consen   10 IGDNSIYVFGGRD-SSGSPLNDLWIFDIETNTWTRL   44 (49)
T ss_dssp             E-TTEEEEE--EE-E-TEE---EEEEETTTTEEEE-
T ss_pred             EeCCeEEEECCCC-CCCcccCCEEEEECCCCEEEEC
Confidence            3456777773 22 111   1699999999999988

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=85.30  E-value=2.1  Score=26.69  Aligned_cols=42  Identities=31%  Similarity=0.549  Sum_probs=30.0

Q ss_pred             eEEEEECCeEEEEEec--CCCCccEEEEEEeccCCCCCCeEEEEEe
Q 018497          237 KYLNVFDGYLCVFATI--PNNTFRSYELWVMKEYGLTESWTKLYTI  280 (355)
Q Consensus       237 ~~L~~~~G~L~~v~~~--~~~~~~~l~iW~l~~~~~~~~W~~~~~i  280 (355)
                      ...++.+++|+++++.  +......-++|+++..  +..|+++..+
T Consensus         5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~--t~~W~~~~~~   48 (49)
T PF07646_consen    5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTE--TNQWTELSPM   48 (49)
T ss_pred             eEEEEECCEEEEECCcccCCCCcccceeEEEECC--CCEEeecCCC
Confidence            4567889999999988  3333456678888863  4789886543

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=85.20  E-value=28  Score=31.23  Aligned_cols=113  Identities=14%  Similarity=0.126  Sum_probs=64.6

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEECCeE---EEEEecCCCCccEEE
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYL---CVFATIPNNTFRSYE  261 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~~G~L---~~v~~~~~~~~~~l~  261 (355)
                      +|-|+|-.-.-+.        ..+.|..||+.+..= ..+-.| ...     +.-....+.+   .++...++   ..+.
T Consensus        48 avAVs~~~~aSGs--------sDetI~IYDm~k~~qlg~ll~H-ags-----itaL~F~~~~S~shLlS~sdD---G~i~  110 (362)
T KOG0294|consen   48 ALAVSGPYVASGS--------SDETIHIYDMRKRKQLGILLSH-AGS-----ITALKFYPPLSKSHLLSGSDD---GHII  110 (362)
T ss_pred             EEEecceeEeccC--------CCCcEEEEeccchhhhcceecc-ccc-----eEEEEecCCcchhheeeecCC---CcEE
Confidence            6667775333333        358999999876543 333322 211     1222222222   44555544   5899


Q ss_pred             EEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497          262 LWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       262 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v  324 (355)
                      ||..+      +|..+..+....-.+.-+.++..|++-+.  ...|+ .+-.+|+.+++.-.+
T Consensus       111 iw~~~------~W~~~~slK~H~~~Vt~lsiHPS~KLALs--Vg~D~-~lr~WNLV~Gr~a~v  164 (362)
T KOG0294|consen  111 IWRVG------SWELLKSLKAHKGQVTDLSIHPSGKLALS--VGGDQ-VLRTWNLVRGRVAFV  164 (362)
T ss_pred             EEEcC------CeEEeeeecccccccceeEecCCCceEEE--EcCCc-eeeeehhhcCcccee
Confidence            99855      59888887544323555777777877776  43444 477777777665443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=84.41  E-value=0.52  Score=43.56  Aligned_cols=38  Identities=32%  Similarity=0.630  Sum_probs=35.0

Q ss_pred             CCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCCh
Q 018497            5 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSK   42 (355)
Q Consensus         5 ~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~   42 (355)
                      .-.||.|++..||+-|-.+++.|++.+|+.|+-+..|.
T Consensus        72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~  109 (483)
T KOG4341|consen   72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG  109 (483)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence            34899999999999999999999999999999988764

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=84.12  E-value=29  Score=30.64  Aligned_cols=121  Identities=13%  Similarity=0.204  Sum_probs=71.9

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEe
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM  265 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l  265 (355)
                      .+.-||.+|+.....        +.|...|+.+..-++++-| +....+....-....|++.+.+....    .+  -..
T Consensus       195 ~atpdGsvwyaslag--------naiaridp~~~~aev~p~P-~~~~~gsRriwsdpig~~wittwg~g----~l--~rf  259 (353)
T COG4257         195 CATPDGSVWYASLAG--------NAIARIDPFAGHAEVVPQP-NALKAGSRRIWSDPIGRAWITTWGTG----SL--HRF  259 (353)
T ss_pred             EECCCCcEEEEeccc--------cceEEcccccCCcceecCC-CcccccccccccCccCcEEEeccCCc----ee--eEe
Confidence            345689999986655        6899999999988888888 76433222222333466655533221    22  233


Q ss_pred             ccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEEe
Q 018497          266 KEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVH  327 (355)
Q Consensus       266 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~~  327 (355)
                      +-  ...+|.. +.++-..-.-..+.+...|.|.+.  .-..+ .+..||++|.++..+.+.
T Consensus       260 dP--s~~sW~e-ypLPgs~arpys~rVD~~grVW~s--ea~ag-ai~rfdpeta~ftv~p~p  315 (353)
T COG4257         260 DP--SVTSWIE-YPLPGSKARPYSMRVDRHGRVWLS--EADAG-AIGRFDPETARFTVLPIP  315 (353)
T ss_pred             Cc--cccccee-eeCCCCCCCcceeeeccCCcEEee--ccccC-ceeecCcccceEEEecCC
Confidence            32  1245655 344332211223445556677775  31334 699999999999988664

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=83.71  E-value=4.4  Score=38.48  Aligned_cols=127  Identities=14%  Similarity=0.123  Sum_probs=76.0

Q ss_pred             EEEEcCCcccEEecCCCCCC-------C---ceeEEEEecCCCCCCcEEEE--------------EEcCCCceeEecc--
Q 018497          117 IYLWNPLIKKYMTLPRPSLN-------P---RYLGFGVNSVSGHLDDFKVV--------------YSLRSNSWKNIAY--  170 (355)
Q Consensus       117 ~~V~NP~T~~~~~LP~~~~~-------~---~~~~~g~d~~~~~~~~ykvv--------------yss~t~~W~~~~~--  170 (355)
                      +..--|.|-.|.++|+-...       +   +-..+.+++.   ++...+.              |+-+.+.|..+..  
T Consensus       231 ~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~---~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t  307 (723)
T KOG2437|consen  231 YISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQ---TECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT  307 (723)
T ss_pred             hhhcccccccccccCchhhcccccccCccccCcceEEEeCC---CcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC
Confidence            34446778888888776522       1   1156667766   5544444              9999999998863  


Q ss_pred             CCCceeeeccccccceeEe--CceEEEEEeeecc---CCCCCCcEEEEEEcCCceeeEecCCCCCCCCC----CceEEEE
Q 018497          171 GFPRSIEINRSHINSSVFL--NGSVHWCARFSCY---HDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDD----ADKYLNV  241 (355)
Q Consensus       171 ~~p~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~---~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~----~~~~L~~  241 (355)
                      ..|....+.+     .|.-  ..+||-++..-.+   ...+.+.-+-.||.+++.|..+..- ...+.+    +.-.+++
T Consensus       308 ~~PG~RsCHR-----MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~d-t~~dGGP~~vfDHqM~V  381 (723)
T KOG2437|consen  308 EGPGARSCHR-----MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSED-TAADGGPKLVFDHQMCV  381 (723)
T ss_pred             CCCcchhhhh-----hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccc-ccccCCcceeecceeeE
Confidence            3455444443     2332  3378877654321   1235566789999999999999665 443222    2223444


Q ss_pred             EC--CeEEEEEec
Q 018497          242 FD--GYLCVFATI  252 (355)
Q Consensus       242 ~~--G~L~~v~~~  252 (355)
                      .+  |-|||.++.
T Consensus       382 d~~k~~iyVfGGr  394 (723)
T KOG2437|consen  382 DSEKHMIYVFGGR  394 (723)
T ss_pred             ecCcceEEEecCe
Confidence            44  347887764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=83.32  E-value=37  Score=31.16  Aligned_cols=118  Identities=14%  Similarity=0.223  Sum_probs=65.3

Q ss_pred             CceEEEEEeeeccCCCCCCcEEEEEEcCCce--eeE---ecCCCCCCCCCCceEEEEE-CCe-EEEEEecCCCCccEEEE
Q 018497          190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQT---VMMPYDLSTDDADKYLNVF-DGY-LCVFATIPNNTFRSYEL  262 (355)
Q Consensus       190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~--~~~---i~lP~~~~~~~~~~~L~~~-~G~-L~~v~~~~~~~~~~l~i  262 (355)
                      +|...|....+       .+.|..|+++.+.  +..   +.+| ....   ...++-. +|+ +|++....    +.+.+
T Consensus       154 dg~~v~v~dlG-------~D~v~~~~~~~~~~~l~~~~~~~~~-~G~G---PRh~~f~pdg~~~Yv~~e~s----~~v~v  218 (345)
T PF10282_consen  154 DGRFVYVPDLG-------ADRVYVYDIDDDTGKLTPVDSIKVP-PGSG---PRHLAFSPDGKYAYVVNELS----NTVSV  218 (345)
T ss_dssp             TSSEEEEEETT-------TTEEEEEEE-TTS-TEEEEEEEECS-TTSS---EEEEEE-TTSSEEEEEETTT----TEEEE
T ss_pred             CCCEEEEEecC-------CCEEEEEEEeCCCceEEEeeccccc-cCCC---CcEEEEcCCcCEEEEecCCC----CcEEE
Confidence            56555554333       4789999987766  533   3556 3331   2233333 354 55555443    58888


Q ss_pred             EEeccCCCCCCeEEEEEecCCCc------eeEeEEEeeCCcEEEEEEeeCCceEEEEEeC--CCCeEEEEEE
Q 018497          263 WVMKEYGLTESWTKLYTIEKPQR------IWWPLGFTERGKIFIRGECRHGGYGLLVYNP--HSDTFKCIGV  326 (355)
Q Consensus       263 W~l~~~~~~~~W~~~~~i~~~~~------~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~--~t~~~~~v~~  326 (355)
                      +.++..  +..++...+++....      ...-+.+..+|+.+++. .+... .|.+|++  ++++++.+..
T Consensus       219 ~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs-nr~~~-sI~vf~~d~~~g~l~~~~~  286 (345)
T PF10282_consen  219 FDYDPS--DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS-NRGSN-SISVFDLDPATGTLTLVQT  286 (345)
T ss_dssp             EEEETT--TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE-ECTTT-EEEEEEECTTTTTEEEEEE
T ss_pred             Eeeccc--CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE-eccCC-EEEEEEEecCCCceEEEEE
Confidence            888842  246777777654321      23446677788655541 32333 5777776  5678877643

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=82.98  E-value=58  Score=33.15  Aligned_cols=63  Identities=13%  Similarity=0.344  Sum_probs=41.8

Q ss_pred             cEEEEEEeccC----CCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCC-CeEEEE
Q 018497          258 RSYELWVMKEY----GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHS-DTFKCI  324 (355)
Q Consensus       258 ~~l~iW~l~~~----~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t-~~~~~v  324 (355)
                      ..+.||++.++    .....|+.+..=.+...-....++..+|.++.+  . .+. .+-.||..+ ++++..
T Consensus       479 g~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~--s-~~~-~Itiwd~~~~~~l~~~  546 (792)
T KOG1963|consen  479 GDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV--S-FDD-TITIWDYDTKNELLCT  546 (792)
T ss_pred             CeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE--e-cCC-EEEEecCCChhhhhcc
Confidence            59999999654    234689986554432212334556678888888  6 566 599999999 544443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=82.77  E-value=31  Score=31.25  Aligned_cols=96  Identities=9%  Similarity=0.023  Sum_probs=52.2

Q ss_pred             cEEEEEEcCC-ceeeEec-CCCCCCCCCCceEEEEE-CCe-EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC
Q 018497          209 WLIVSFDFAK-EIFQTVM-MPYDLSTDDADKYLNVF-DGY-LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ  284 (355)
Q Consensus       209 ~~Il~fD~~~-~~~~~i~-lP~~~~~~~~~~~L~~~-~G~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~  284 (355)
                      ..|-.||+.+ .++..+. ++ ...   ....++.. +|+ |++... ..   ..+.+|.+++   +..+.....++...
T Consensus        12 ~~I~~~~~~~~g~l~~~~~~~-~~~---~~~~l~~spd~~~lyv~~~-~~---~~i~~~~~~~---~g~l~~~~~~~~~~   80 (330)
T PRK11028         12 QQIHVWNLNHEGALTLLQVVD-VPG---QVQPMVISPDKRHLYVGVR-PE---FRVLSYRIAD---DGALTFAAESPLPG   80 (330)
T ss_pred             CCEEEEEECCCCceeeeeEEe-cCC---CCccEEECCCCCEEEEEEC-CC---CcEEEEEECC---CCceEEeeeecCCC
Confidence            6789999864 4555552 22 111   11123322 455 555443 33   5788888874   24566666665432


Q ss_pred             ceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCC
Q 018497          285 RIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHS  318 (355)
Q Consensus       285 ~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t  318 (355)
                       ....+++..+|+.++.. ...++ .+.+||+++
T Consensus        81 -~p~~i~~~~~g~~l~v~-~~~~~-~v~v~~~~~  111 (330)
T PRK11028         81 -SPTHISTDHQGRFLFSA-SYNAN-CVSVSPLDK  111 (330)
T ss_pred             -CceEEEECCCCCEEEEE-EcCCC-eEEEEEECC
Confidence             23346667778655541 31244 588898874

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=82.70  E-value=33  Score=30.16  Aligned_cols=110  Identities=14%  Similarity=0.077  Sum_probs=60.4

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEE
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWV  264 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~  264 (355)
                      .+.+++.+|-+....        ...+.||..+-+- ..++.| .   +  ..-|+.-+..|.+-.+.+     +  ++.
T Consensus        95 it~~~d~l~qLTWk~--------~~~f~yd~~tl~~~~~~~y~-~---E--GWGLt~dg~~Li~SDGS~-----~--L~~  153 (264)
T PF05096_consen   95 ITILGDKLYQLTWKE--------GTGFVYDPNTLKKIGTFPYP-G---E--GWGLTSDGKRLIMSDGSS-----R--LYF  153 (264)
T ss_dssp             EEEETTEEEEEESSS--------SEEEEEETTTTEEEEEEE-S-S---S----EEEECSSCEEEE-SSS-----E--EEE
T ss_pred             EEEECCEEEEEEecC--------CeEEEEccccceEEEEEecC-C---c--ceEEEcCCCEEEEECCcc-----c--eEE
Confidence            568899999999987        7899999975322 333444 2   2  345665555665544432     3  445


Q ss_pred             eccCCCCCCeEEEEEecCCCceeEeEEE-----eeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497          265 MKEYGLTESWTKLYTIEKPQRIWWPLGF-----TERGKIFIRGECRHGGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       265 l~~~~~~~~W~~~~~i~~~~~~~~~~~~-----~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v  324 (355)
                      ++.    .....+.+|..... ..|+..     ..+|.||--  . ...+.++..|++|+++...
T Consensus       154 ~dP----~~f~~~~~i~V~~~-g~pv~~LNELE~i~G~IyAN--V-W~td~I~~Idp~tG~V~~~  210 (264)
T PF05096_consen  154 LDP----ETFKEVRTIQVTDN-GRPVSNLNELEYINGKIYAN--V-WQTDRIVRIDPETGKVVGW  210 (264)
T ss_dssp             E-T----TT-SEEEEEE-EET-TEE---EEEEEEETTEEEEE--E-TTSSEEEEEETTT-BEEEE
T ss_pred             ECC----cccceEEEEEEEEC-CEECCCcEeEEEEcCEEEEE--e-CCCCeEEEEeCCCCeEEEE
Confidence            553    12344444443321 122211     136777776  5 4444699999999998654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=82.28  E-value=23  Score=34.77  Aligned_cols=117  Identities=15%  Similarity=0.195  Sum_probs=61.4

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCC--ceeeEe-cCCCCCCCCC-----CceEEEEECCeEEEEEecCCCCc
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAK--EIFQTV-MMPYDLSTDD-----ADKYLNVFDGYLCVFATIPNNTF  257 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~--~~~~~i-~lP~~~~~~~-----~~~~L~~~~G~L~~v~~~~~~~~  257 (355)
                      +++.+|.+|......         .|.++|..+  +.|+.- ..| ......     ....++..+|++++.....    
T Consensus        65 Pvv~~g~vyv~s~~g---------~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~~~~v~v~t~dg----  130 (527)
T TIGR03075        65 PLVVDGVMYVTTSYS---------RVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALYDGKVFFGTLDA----  130 (527)
T ss_pred             CEEECCEEEEECCCC---------cEEEEECCCCceeeEecCCCC-cccccccccccccccceEECCEEEEEcCCC----
Confidence            889999999976654         799999875  456543 333 221100     0112345567776644322    


Q ss_pred             cEEEEEEeccCCCCCCeEEEEE-ecCCC-ceeEeEEEeeCCcEEEEEEee-----CCceEEEEEeCCCCeEEEE
Q 018497          258 RSYELWVMKEYGLTESWTKLYT-IEKPQ-RIWWPLGFTERGKIFIRGECR-----HGGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       258 ~~l~iW~l~~~~~~~~W~~~~~-i~~~~-~~~~~~~~~~~g~i~~~~~~~-----~~~~~l~~yd~~t~~~~~v  324 (355)
                         .+..++....+..|..... ..... ....|+.  .+|.||+.  ..     .++ .|+.||.+|++...-
T Consensus       131 ---~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v--~~g~Vivg--~~~~~~~~~G-~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       131 ---RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV--VKGKVITG--ISGGEFGVRG-YVTAYDAKTGKLVWR  196 (527)
T ss_pred             ---EEEEEECCCCCEEeecccccccccccccCCcEE--ECCEEEEe--ecccccCCCc-EEEEEECCCCceeEe
Confidence               2445543323455664321 00000 0122332  24566665  21     134 599999999986554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=82.25  E-value=32  Score=29.64  Aligned_cols=109  Identities=15%  Similarity=0.234  Sum_probs=58.3

Q ss_pred             eeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCc-eeEEEEecCC-CC-CCc-EEEEEEcCCC----ceeEecc
Q 018497           99 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPR-YLGFGVNSVS-GH-LDD-FKVVYSLRSN----SWKNIAY  170 (355)
Q Consensus        99 ~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~-~~~~g~d~~~-~~-~~~-ykvvyss~t~----~W~~~~~  170 (355)
                      --.+|--|+..+  .+..+-+|||..+..+.-=......- ..+..+|..+ +. +++ .-.++|-+|+    +||....
T Consensus        25 yN~dGnY~ltcG--sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a  102 (307)
T KOG0316|consen   25 YNVDGNYCLTCG--SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA  102 (307)
T ss_pred             EccCCCEEEEcC--CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccc
Confidence            334677787774  67889999999987764322211110 1555566542 11 223 2223788875    6765441


Q ss_pred             CCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCC
Q 018497          171 GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMP  227 (355)
Q Consensus       171 ~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP  227 (355)
                      .... ..+....   +|.+.|.+              ...+-++|-.+.++..|+.-
T Consensus       103 qVNt-V~fNees---SVv~Sgsf--------------D~s~r~wDCRS~s~ePiQil  141 (307)
T KOG0316|consen  103 QVNT-VRFNEES---SVVASGSF--------------DSSVRLWDCRSRSFEPIQIL  141 (307)
T ss_pred             eeeE-EEecCcc---eEEEeccc--------------cceeEEEEcccCCCCccchh
Confidence            2221 2222222   45544422              24677777777777776544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=81.06  E-value=49  Score=31.24  Aligned_cols=101  Identities=14%  Similarity=0.105  Sum_probs=57.4

Q ss_pred             cEEEEEEcCCceeeEecCCCCCCCCC-Cc-eEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 018497          209 WLIVSFDFAKEIFQTVMMPYDLSTDD-AD-KYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI  286 (355)
Q Consensus       209 ~~Il~fD~~~~~~~~i~lP~~~~~~~-~~-~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~  286 (355)
                      ..+.+||+.+-+.+.+..| ...... +. +.+.-. |...++.+..    ..+.+-..+    ..+|.--..|+-   .
T Consensus       280 ky~ysyDle~ak~~k~~~~-~g~e~~~~e~FeVShd-~~fia~~G~~----G~I~lLhak----T~eli~s~KieG---~  346 (514)
T KOG2055|consen  280 KYLYSYDLETAKVTKLKPP-YGVEEKSMERFEVSHD-SNFIAIAGNN----GHIHLLHAK----TKELITSFKIEG---V  346 (514)
T ss_pred             eEEEEeeccccccccccCC-CCcccchhheeEecCC-CCeEEEcccC----ceEEeehhh----hhhhhheeeecc---E
Confidence            6899999999999999877 555432 11 222222 3332222222    233333333    244555444442   2


Q ss_pred             eEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEE
Q 018497          287 WWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       287 ~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~  325 (355)
                      ..-+.+..+|+.++.  +..+++ |+++|++++.....-
T Consensus       347 v~~~~fsSdsk~l~~--~~~~Ge-V~v~nl~~~~~~~rf  382 (514)
T KOG2055|consen  347 VSDFTFSSDSKELLA--SGGTGE-VYVWNLRQNSCLHRF  382 (514)
T ss_pred             EeeEEEecCCcEEEE--EcCCce-EEEEecCCcceEEEE
Confidence            444666677755555  425674 999999999765543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=80.67  E-value=38  Score=30.65  Aligned_cols=111  Identities=15%  Similarity=0.045  Sum_probs=0.0

Q ss_pred             CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCC
Q 018497          190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYG  269 (355)
Q Consensus       190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~  269 (355)
                      .+.|||.....        ..|+.+|+.+..-+.+..| ...   ....+..-+|.|..+..       .+.++..+.  
T Consensus        36 ~~~L~w~DI~~--------~~i~r~~~~~g~~~~~~~p-~~~---~~~~~~d~~g~Lv~~~~-------g~~~~~~~~--   94 (307)
T COG3386          36 RGALLWVDILG--------GRIHRLDPETGKKRVFPSP-GGF---SSGALIDAGGRLIACEH-------GVRLLDPDT--   94 (307)
T ss_pred             CCEEEEEeCCC--------CeEEEecCCcCceEEEECC-CCc---ccceeecCCCeEEEEcc-------ccEEEeccC--


Q ss_pred             CCCCeEEEEEecCCCc--eeEeEEEeeCCcEEEEEEeeC---Cce-------EEEEEeCCCCeEEEE
Q 018497          270 LTESWTKLYTIEKPQR--IWWPLGFTERGKIFIRGECRH---GGY-------GLLVYNPHSDTFKCI  324 (355)
Q Consensus       270 ~~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~~~~~~~~---~~~-------~l~~yd~~t~~~~~v  324 (355)
                       ...|++........-  ..--..+..+|.++|.  ...   ...       .|+.+|+.+.+.+.+
T Consensus        95 -~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfg--t~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~  158 (307)
T COG3386          95 -GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFG--DMGYFDLGKSEERPTGSLYRVDPDGGVVRLL  158 (307)
T ss_pred             -CceeEEeccccCCCCcCCCCceeEcCCCCEEEe--CCCccccCccccCCcceEEEEcCCCCEEEee

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=80.31  E-value=4.1  Score=25.28  Aligned_cols=39  Identities=8%  Similarity=0.112  Sum_probs=24.6

Q ss_pred             ceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCC
Q 018497          191 GSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLS  231 (355)
Q Consensus       191 G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~  231 (355)
                      +.+|..++... ........+.+||+.+.+|+.+ ++| ..+
T Consensus         2 ~~~~vfGG~~~-~~~~~~nd~~~~~~~~~~W~~~~~~P-~~R   41 (49)
T PF13415_consen    2 NKLYVFGGYDD-DGGTRLNDVWVFDLDTNTWTRIGDLP-PPR   41 (49)
T ss_pred             CEEEEECCcCC-CCCCEecCEEEEECCCCEEEECCCCC-CCc
Confidence            45555554330 0123345689999999999998 666 443

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=80.17  E-value=6.7  Score=24.28  Aligned_cols=24  Identities=0%  Similarity=0.026  Sum_probs=19.9

Q ss_pred             CceEEEEcCCcccEEecCCCCCCC
Q 018497          114 RSLIYLWNPLIKKYMTLPRPSLNP  137 (355)
Q Consensus       114 ~~~~~V~NP~T~~~~~LP~~~~~~  137 (355)
                      ...++++||.|++|.+++.+|..+
T Consensus        18 ~nd~~~~~~~~~~W~~~~~~P~~R   41 (49)
T PF13415_consen   18 LNDVWVFDLDTNTWTRIGDLPPPR   41 (49)
T ss_pred             ecCEEEEECCCCEEEECCCCCCCc
Confidence            346899999999999998777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	8e-07
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	6e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-04

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 49.2 bits (116), Expect = 8e-07
 Identities = 22/123 (17%), Positives = 36/123 (29%), Gaps = 3/123 (2%)

Query: 7   RLPEDVMIDIFLRLEVKNLARL-RCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGI 65
            LPE +++ +   L    L +  R VC  W  L+       +   Q    P         
Sbjct: 53  ELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEE-- 110

Query: 66  SPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIK 125
              +  FY    +    L +P     L     V              D  + +  +  +K
Sbjct: 111 RDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDNGVEFTQDDSVK 170

Query: 126 KYM 128
           KY 
Sbjct: 171 KYF 173

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 7  RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTL 38
           LP+++++ IF  L +  L ++  VCK W  L
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 42

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 7   RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGIS 66
            LP+++++ IF  L +  L ++  VCK W  L + ++  +  L+ + +N  P +    +S
Sbjct: 11  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ-TLDLTGKNLHPDVTGRLLS 69

Query: 67  PSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSC 101
              + F   +    + L +     ++  +D+  S 
Sbjct: 70  QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV 104

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 50/367 (13%), Positives = 98/367 (26%), Gaps = 113/367 (30%)

Query: 32  CKSWNTLLTS--KTFVEIHLNQSMRNPRPLLFRHGISPSY-LGFYSTKC--KEFEDL--- 83
           CK    LLT+  K   +     +  +         ++P         K      +DL   
Sbjct: 266 CK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPRE 321

Query: 84  ---CDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPL----IKKYMTLPRPSLN 136
               +P        L ++           +G        W+        K  T+   SLN
Sbjct: 322 VLTTNP-----RR-LSIIAE------SIRDGLAT-----WDNWKHVNCDKLTTIIESSLN 364

Query: 137 --------PRYLGFGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVF 188
                     +    V           +   L S  W ++       + +N+ H  S V 
Sbjct: 365 VLEPAEYRKMFDRLSV-----FPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLVE 418

Query: 189 LNG-----SVHWCARFSCYHDNSCPW---------LIVSFDFAKEIFQTVMMPYDLSTDD 234
                   S+      S Y +              ++  ++  K          DL    
Sbjct: 419 KQPKESTISIP-----SIYLELKVKLENEYALHRSIVDHYNIPKTFD-----SDDLIPPY 468

Query: 235 ADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTE 294
            D+Y   F  ++             + L  ++       +  ++           L F  
Sbjct: 469 LDQY---FYSHI------------GHHLKNIEHPERMTLFRMVF-----------LDFR- 501

Query: 295 RGKIFIRGECRHGGYGLLVYNPHSDTF-------KCIGVHLPYYAIQVLNFVESIIEPVS 347
               F+  + RH            +T          I  + P Y  +++N +   +  + 
Sbjct: 502 ----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAILDFLPKIE 556

Query: 348 QSLILSR 354
           ++LI S+
Sbjct: 557 ENLICSK 563

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 7  RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTL 38
          RLP DV + I   L   +L +L      WN  
Sbjct: 7  RLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.59
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.59
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.59
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.55
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.55
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.54
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.44
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.4
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.4
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.36
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.35
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.31
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.28
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.12
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.09
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.05
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.04
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.92
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.87
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.78
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.58
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	98.37
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.18
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.01
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.76
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.35
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.17
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	95.79
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	95.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	95.67
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.55
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	95.28
3jro_A	753	Fusion protein of protein transport protein SEC13	95.02
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	94.85
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	94.75
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	94.21
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	94.19
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	94.08
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	94.07
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	94.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	93.98
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	93.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	93.83
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	93.8
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	93.58
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	93.44
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	93.34
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	93.25
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	93.2
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	93.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	93.04
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	92.75
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	92.73
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	92.65
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	92.62
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	92.53
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	92.25
3v9f_A	781	Two-component system sensor histidine kinase/RESP	92.24
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	91.7
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	91.57
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	91.54
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	91.52
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	91.45
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	91.22
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	91.13
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	91.11
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	90.94
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	90.62
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	90.4
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	90.2
3jrp_A	379	Fusion protein of protein transport protein SEC13	90.04
2pm7_B	297	Protein transport protein SEC13, protein transport	89.7
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	89.38
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	89.35
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	89.15
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	88.79
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	88.74
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	88.65
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	88.41
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	88.25
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	88.23
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	88.17
3jro_A	753	Fusion protein of protein transport protein SEC13	87.26
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	86.38
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	85.27
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	85.04
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	85.03
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	84.83
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	84.73
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	84.5
2p4o_A	306	Hypothetical protein; putative lactonase, structur	84.11
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	83.9
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	83.43
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	83.32
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	83.17
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	83.07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	83.06
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	82.75
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	82.64
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	81.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	81.82
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	81.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	81.61
2p4o_A	306	Hypothetical protein; putative lactonase, structur	81.55
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	81.44
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	81.41
3ow8_A	321	WD repeat-containing protein 61; structural genomi	80.91
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	80.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	80.1
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	80.08

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.59  E-value=1.2e-12  Score=117.89  Aligned_cols=232  Identities=9%  Similarity=0.086  Sum_probs=150.4

Q ss_pred             eeeeccCCcccccCCCCCCCCCCCCeEEEeeeCceEEEeecCC---------CCceEEEEcCCcccEEecCCCCCCCce-
Q 018497           70 LGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGS---------DRSLIYLWNPLIKKYMTLPRPSLNPRY-  139 (355)
Q Consensus        70 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~GLl~l~~~~~---------~~~~~~V~NP~T~~~~~LP~~~~~~~~-  139 (355)
                      ...|++....|...+.+...  ......++..+|.|++.++..         ....++++||.|++|..+|+++..+.. 
T Consensus        26 ~~~yd~~~~~W~~~~~~~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  103 (318)
T 2woz_A           26 AVAYDPMENECYLTALAEQI--PRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF  103 (318)
T ss_dssp             EEEEETTTTEEEEEEECTTS--CSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred             eEEECCCCCceecccCCccC--CccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence            35788888888764433221  223344555677766554310         012388999999999999987766422 


Q ss_pred             ---------eEEE-EecCCCCCCcEEEE--EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCC
Q 018497          140 ---------LGFG-VNSVSGHLDDFKVV--YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSC  207 (355)
Q Consensus       140 ---------~~~g-~d~~~~~~~~ykvv--yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~  207 (355)
                               +.+| .+...  .....-+  ||..+++|+.++ .+|.......     .+.++|++|.+++..  .+...
T Consensus       104 ~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~-----~~~~~~~iyv~GG~~--~~~~~  173 (318)
T 2woz_A          104 GLGEVDDKIYVVAGKDLQT--EASLDSVLCYDPVAAKWSEVK-NLPIKVYGHN-----VISHNGMIYCLGGKT--DDKKC  173 (318)
T ss_dssp             EEEEETTEEEEEEEEBTTT--CCEEEEEEEEETTTTEEEEEC-CCSSCEESCE-----EEEETTEEEEECCEE--SSSCB
T ss_pred             ceEEECCEEEEEcCccCCC--CcccceEEEEeCCCCCEeECC-CCCCcccccE-----EEEECCEEEEEcCCC--CCCCc
Confidence                     3333 33210  1122222  999999999998 7776654332     678999999998764  11223


Q ss_pred             CcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 018497          208 PWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI  286 (355)
Q Consensus       208 ~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~  286 (355)
                      ...+..||+.+++|+.+ ++| ..+   .....+..+|+|+++++.... ...-.+|.++-.  +..|+++..++.... 
T Consensus       174 ~~~~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~--~~~W~~~~~~p~~r~-  245 (318)
T 2woz_A          174 TNRVFIYNPKKGDWKDLAPMK-TPR---SMFGVAIHKGKIVIAGGVTED-GLSASVEAFDLK--TNKWEVMTEFPQERS-  245 (318)
T ss_dssp             CCCEEEEETTTTEEEEECCCS-SCC---BSCEEEEETTEEEEEEEEETT-EEEEEEEEEETT--TCCEEECCCCSSCCB-
T ss_pred             cceEEEEcCCCCEEEECCCCC-CCc---ccceEEEECCEEEEEcCcCCC-CccceEEEEECC--CCeEEECCCCCCccc-
Confidence            45799999999999998 666 444   345677889999999986542 123457777642  467999876665442 


Q ss_pred             eEeEEEeeCCcEEEEEEeeCC-------------ceEEEEEeCCCCeEEEE
Q 018497          287 WWPLGFTERGKIFIRGECRHG-------------GYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       287 ~~~~~~~~~g~i~~~~~~~~~-------------~~~l~~yd~~t~~~~~v  324 (355)
                       ...++..+++||+.  ...+             ...+..||+++++|+++
T Consensus       246 -~~~~~~~~~~i~v~--GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          246 -SISLVSLAGSLYAI--GGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             -SCEEEEETTEEEEE--CCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             -ceEEEEECCEEEEE--CCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence             22233446788888  3111             12599999999999998

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.59  E-value=1.5e-12  Score=116.35  Aligned_cols=242  Identities=12%  Similarity=0.061  Sum_probs=154.4

Q ss_pred             cEEEeecCCCCceeeeccCCcccccCCCCCCCCCCCCeEEEeeeCceEEEeecC--CCCceEEEEcCCcccEEecCCCCC
Q 018497           58 PLLFRHGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNG--SDRSLIYLWNPLIKKYMTLPRPSL  135 (355)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~GLl~l~~~~--~~~~~~~V~NP~T~~~~~LP~~~~  135 (355)
                      .+++...........|++....|..++....+   ......+..+|.|++..+.  .....+.++||.|++|..+|+++.
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK---RRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCC---CBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcc---cceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            34444433233345788888888877532221   1223344457776555431  134678999999999999998876


Q ss_pred             CCce----------eEEE-EecCCCCCCcE-EEE-EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeecc
Q 018497          136 NPRY----------LGFG-VNSVSGHLDDF-KVV-YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCY  202 (355)
Q Consensus       136 ~~~~----------~~~g-~d~~~~~~~~y-kvv-yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~  202 (355)
                      .+..          +.+| ++..   .... .+. ||..+++|+.++ .+|.......     .+.++|++|.+++..  
T Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~-----~~~~~~~iyv~GG~~--  159 (306)
T 3ii7_A           91 PRDSLAACAAEGKIYTSGGSEVG---NSALYLFECYDTRTESWHTKP-SMLTQRCSHG-----MVEANGLIYVCGGSL--  159 (306)
T ss_dssp             CCBSCEEEEETTEEEEECCBBTT---BSCCCCEEEEETTTTEEEEEC-CCSSCCBSCE-----EEEETTEEEEECCEE--
T ss_pred             cccceeEEEECCEEEEECCCCCC---CcEeeeEEEEeCCCCceEeCC-CCcCCcceeE-----EEEECCEEEEECCCC--
Confidence            6432          2222 2211   1111 122 999999999998 7776543322     678999999998765  


Q ss_pred             CCCCC----CcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEE
Q 018497          203 HDNSC----PWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKL  277 (355)
Q Consensus       203 ~~~~~----~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~  277 (355)
                      . ...    ...+.+||+.+++|+.+ ++| ..+   ....++..+|+|+++++.... ...-.+|.++-.  ...|..+
T Consensus       160 ~-~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~--~~~W~~~  231 (306)
T 3ii7_A          160 G-NNVSGRVLNSCEVYDPATETWTELCPMI-EAR---KNHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIK--LNEWKMV  231 (306)
T ss_dssp             S-CTTTCEECCCEEEEETTTTEEEEECCCS-SCC---BSCEEEEETTEEEEECCEETT-EEBCCEEEEETT--TTEEEEC
T ss_pred             C-CCCcccccceEEEeCCCCCeEEECCCcc-chh---hcceEEEECCEEEEEeCCCCC-CCCceEEEeeCC--CCcEEEC
Confidence            1 112    56799999999999999 666 444   355677889999999876441 112346776642  3679988


Q ss_pred             EEecCCCceeEeEEEeeCCcEEEEEEeeCC----ceEEEEEeCCCCeEEEEE
Q 018497          278 YTIEKPQRIWWPLGFTERGKIFIRGECRHG----GYGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       278 ~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~l~~yd~~t~~~~~v~  325 (355)
                      ..++...  ....++..++.||+.  ...+    ...+..||+++++|+.+.
T Consensus       232 ~~~p~~r--~~~~~~~~~~~i~v~--GG~~~~~~~~~~~~yd~~~~~W~~~~  279 (306)
T 3ii7_A          232 SPMPWKG--VTVKCAAVGSIVYVL--AGFQGVGRLGHILEYNTETDKWVANS  279 (306)
T ss_dssp             CCCSCCB--SCCEEEEETTEEEEE--ECBCSSSBCCEEEEEETTTTEEEEEE
T ss_pred             CCCCCCc--cceeEEEECCEEEEE--eCcCCCeeeeeEEEEcCCCCeEEeCC
Confidence            7665543  222333346788888  3211    126999999999999984

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.59  E-value=1e-12  Score=118.11  Aligned_cols=235  Identities=12%  Similarity=0.066  Sum_probs=149.8

Q ss_pred             eeeeccCCcccccCCCCCCCCCCCCeEEEeeeCceEEEeecC-----CC----CceEEEEcCCcccEEecCCCCCCCce-
Q 018497           70 LGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNG-----SD----RSLIYLWNPLIKKYMTLPRPSLNPRY-  139 (355)
Q Consensus        70 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~GLl~l~~~~-----~~----~~~~~V~NP~T~~~~~LP~~~~~~~~-  139 (355)
                      ...|++....|...+.|...  ......++..+|.|.+..+.     ..    ...++++||.|++|..+|+++..+.. 
T Consensus        15 ~~~yd~~~~~W~~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~   92 (315)
T 4asc_A           15 AVAYDPAANECYCASLSSQV--PKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF   92 (315)
T ss_dssp             EEEEETTTTEEEEEECCCCS--CSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred             eEEECCCCCeEecCCCCCCC--CccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence            35788888888653333211  22333445556666554431     11    12488999999999999988766422 


Q ss_pred             ---------eEEE-Eec--CCCCCCcEEEEEEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCC
Q 018497          140 ---------LGFG-VNS--VSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSC  207 (355)
Q Consensus       140 ---------~~~g-~d~--~~~~~~~ykvvyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~  207 (355)
                               +.+| .+.  .....++..+ ||..+++|+.++ .+|.......     .+.++|++|.+++..  .+...
T Consensus        93 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~-~d~~~~~W~~~~-~~p~~r~~~~-----~~~~~~~iyv~GG~~--~~~~~  163 (315)
T 4asc_A           93 GLGEALNSIYVVGGREIKDGERCLDSVMC-YDRLSFKWGESD-PLPYVVYGHT-----VLSHMDLVYVIGGKG--SDRKC  163 (315)
T ss_dssp             EEEEETTEEEEECCEESSTTCCBCCCEEE-EETTTTEEEECC-CCSSCCBSCE-----EEEETTEEEEECCBC--TTSCB
T ss_pred             eEEEECCEEEEEeCCcCCCCCcccceEEE-ECCCCCcEeECC-CCCCccccee-----EEEECCEEEEEeCCC--CCCcc
Confidence                     2222 221  0000111111 999999999998 7776543322     778999999998763  12334


Q ss_pred             CcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 018497          208 PWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI  286 (355)
Q Consensus       208 ~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~  286 (355)
                      ...+.+||+.+++|+.+ ++| ..+   .....+..+|+|+++++.... ...-.+|.++-.  ...|+.+..++...  
T Consensus       164 ~~~~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~--~~~W~~~~~~p~~r--  234 (315)
T 4asc_A          164 LNKMCVYDPKKFEWKELAPMQ-TAR---SLFGATVHDGRIIVAAGVTDT-GLTSSAEVYSIT--DNKWAPFEAFPQER--  234 (315)
T ss_dssp             CCCEEEEETTTTEEEECCCCS-SCC---BSCEEEEETTEEEEEEEECSS-SEEEEEEEEETT--TTEEEEECCCSSCC--
T ss_pred             cceEEEEeCCCCeEEECCCCC-Cch---hceEEEEECCEEEEEeccCCC-CccceEEEEECC--CCeEEECCCCCCcc--
Confidence            56799999999999998 666 544   345677889999999987652 124467777652  46899987665544  


Q ss_pred             eEeEEEeeCCcEEEEEEeeC----C-------ceEEEEEeCCCCeEEEE
Q 018497          287 WWPLGFTERGKIFIRGECRH----G-------GYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       287 ~~~~~~~~~g~i~~~~~~~~----~-------~~~l~~yd~~t~~~~~v  324 (355)
                      ....++..+++||+.|-...    +       ...+..||+++++|+.+
T Consensus       235 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          235 SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             BSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             cceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            22233344678888831100    0       12589999999999999

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.55  E-value=3e-12  Score=114.23  Aligned_cols=229  Identities=12%  Similarity=0.202  Sum_probs=147.6

Q ss_pred             eeeccCCcccccCCCCCCCCCCCCeEEEeeeCceEEEeecC---CCCceEEEEcCCcccEEecCCCCCCCce--------
Q 018497           71 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNG---SDRSLIYLWNPLIKKYMTLPRPSLNPRY--------  139 (355)
Q Consensus        71 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~GLl~l~~~~---~~~~~~~V~NP~T~~~~~LP~~~~~~~~--------  139 (355)
                      ..|++....|..+.....+   .....+...+|.|++..+.   .....+.++||.|++|..+|+++..+..        
T Consensus        33 ~~~d~~~~~W~~~~~~p~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~  109 (302)
T 2xn4_A           33 ECYDFKEERWHQVAELPSR---RCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNG  109 (302)
T ss_dssp             EEEETTTTEEEEECCCSSC---CBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred             EEEcCcCCcEeEcccCCcc---cccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECC
Confidence            4677777777766421111   1222334457776655431   1235789999999999999988766432        


Q ss_pred             --eEEE-EecCCCCCCcEE-EE-EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCC-CCCcEEEE
Q 018497          140 --LGFG-VNSVSGHLDDFK-VV-YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDN-SCPWLIVS  213 (355)
Q Consensus       140 --~~~g-~d~~~~~~~~yk-vv-yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~-~~~~~Il~  213 (355)
                        +.+| ++.    ..... +. ||..+++|+.++ .+|.......     .+.++|++|.+++..  ... .....+..
T Consensus       110 ~iyv~GG~~~----~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~-----~~~~~~~iyv~GG~~--~~~~~~~~~~~~  177 (302)
T 2xn4_A          110 LLYAVGGFDG----STGLSSVEAYNIKSNEWFHVA-PMNTRRSSVG-----VGVVGGLLYAVGGYD--VASRQCLSTVEC  177 (302)
T ss_dssp             EEEEEEEECS----SCEEEEEEEEETTTTEEEEEC-CCSSCCBSCE-----EEEETTEEEEECCEE--TTTTEECCCEEE
T ss_pred             EEEEEcCCCC----CccCceEEEEeCCCCeEeecC-CCCCcccCce-----EEEECCEEEEEeCCC--CCCCccccEEEE
Confidence              2333 332    11222 22 999999999998 7775543322     678999999998765  100 11456999


Q ss_pred             EEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEE
Q 018497          214 FDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGF  292 (355)
Q Consensus       214 fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~  292 (355)
                      ||+.+++|+.+ ++| ..+   ....++..+|+|+++++.... ...-.+|.++-.  ...|+.+..++....  ....+
T Consensus       178 yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~--~~~W~~~~~~~~~r~--~~~~~  248 (302)
T 2xn4_A          178 YNATTNEWTYIAEMS-TRR---SGAGVGVLNNLLYAVGGHDGP-LVRKSVEVYDPT--TNAWRQVADMNMCRR--NAGVC  248 (302)
T ss_dssp             EETTTTEEEEECCCS-SCC---BSCEEEEETTEEEEECCBSSS-SBCCCEEEEETT--TTEEEEECCCSSCCB--SCEEE
T ss_pred             EeCCCCcEEECCCCc-ccc---ccccEEEECCEEEEECCCCCC-cccceEEEEeCC--CCCEeeCCCCCCccc--cCeEE
Confidence            99999999998 666 444   345677889999999876542 112346777642  367999876665442  22233


Q ss_pred             eeCCcEEEEEEeeCCc----eEEEEEeCCCCeEEEEE
Q 018497          293 TERGKIFIRGECRHGG----YGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       293 ~~~g~i~~~~~~~~~~----~~l~~yd~~t~~~~~v~  325 (355)
                      ..+++||+.  ...++    ..+..||+++++|+.+.
T Consensus       249 ~~~~~i~v~--GG~~~~~~~~~v~~yd~~~~~W~~~~  283 (302)
T 2xn4_A          249 AVNGLLYVV--GGDDGSCNLASVEYYNPTTDKWTVVS  283 (302)
T ss_dssp             EETTEEEEE--CCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred             EECCEEEEE--CCcCCCcccccEEEEcCCCCeEEECC
Confidence            346788888  32221    25999999999999884

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.55  E-value=2.7e-12  Score=114.98  Aligned_cols=231  Identities=13%  Similarity=0.134  Sum_probs=147.6

Q ss_pred             eeeeccCCcccccCCCCCCCCCCCCeEEEeeeCceEEEeecC-------CCCceEEEEcCCcccEEecCCCCCCCce---
Q 018497           70 LGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNG-------SDRSLIYLWNPLIKKYMTLPRPSLNPRY---  139 (355)
Q Consensus        70 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~GLl~l~~~~-------~~~~~~~V~NP~T~~~~~LP~~~~~~~~---  139 (355)
                      ...|++....|..++....+   .....++..+|.|++..+.       .....++++||.|++|..+|+++..+..   
T Consensus        41 ~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  117 (308)
T 1zgk_A           41 LEAYNPSNGTWLRLADLQVP---RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV  117 (308)
T ss_dssp             EEEEETTTTEEEECCCCSSC---CBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             EEEEcCCCCeEeECCCCCcc---cccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence            35678887888776422111   1222334556776655421       1134689999999999999988776532   


Q ss_pred             -------eEEE-EecCCCCCCcEEEE-EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcE
Q 018497          140 -------LGFG-VNSVSGHLDDFKVV-YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWL  210 (355)
Q Consensus       140 -------~~~g-~d~~~~~~~~ykvv-yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~  210 (355)
                             +.+| ++..   ...-.+. ||..+++|+.++ .+|.......     .+.++|.+|.+++..   +......
T Consensus       118 ~~~~~~iyv~GG~~~~---~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~-----~~~~~~~iyv~GG~~---~~~~~~~  185 (308)
T 1zgk_A          118 GVIDGHIYAVGGSHGC---IHHNSVERYEPERDEWHLVA-PMLTRRIGVG-----VAVLNRLLYAVGGFD---GTNRLNS  185 (308)
T ss_dssp             EEETTEEEEECCEETT---EECCCEEEEETTTTEEEECC-CCSSCCBSCE-----EEEETTEEEEECCBC---SSCBCCC
T ss_pred             EEECCEEEEEcCCCCC---cccccEEEECCCCCeEeECC-CCCccccceE-----EEEECCEEEEEeCCC---CCCcCce
Confidence                   2221 1211   1000111 999999999998 6775543322     678899999998754   1222467


Q ss_pred             EEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEe
Q 018497          211 IVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWP  289 (355)
Q Consensus       211 Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~  289 (355)
                      +..||+.+++|+.+ ++| ..+   .....+..+|+|+++++.... ...-.+|.++-.  ...|+++..++....  ..
T Consensus       186 ~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~--~~~W~~~~~~p~~r~--~~  256 (308)
T 1zgk_A          186 AECYYPERNEWRMITAMN-TIR---SGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVE--TETWTFVAPMKHRRS--AL  256 (308)
T ss_dssp             EEEEETTTTEEEECCCCS-SCC---BSCEEEEETTEEEEECCBCSS-SBCCCEEEEETT--TTEEEECCCCSSCCB--SC
T ss_pred             EEEEeCCCCeEeeCCCCC-Ccc---ccceEEEECCEEEEEeCCCCC-CccceEEEEeCC--CCcEEECCCCCCCcc--ce
Confidence            99999999999998 566 444   345677789999999876541 123456776642  367998876655442  22


Q ss_pred             EEEeeCCcEEEEEEeeCC----ceEEEEEeCCCCeEEEEEE
Q 018497          290 LGFTERGKIFIRGECRHG----GYGLLVYNPHSDTFKCIGV  326 (355)
Q Consensus       290 ~~~~~~g~i~~~~~~~~~----~~~l~~yd~~t~~~~~v~~  326 (355)
                      .++..+++||+.  ...+    ...+..||+++++|+.+.-
T Consensus       257 ~~~~~~~~i~v~--GG~~~~~~~~~v~~yd~~~~~W~~~~~  295 (308)
T 1zgk_A          257 GITVHQGRIYVL--GGYDGHTFLDSVECYDPDTDTWSEVTR  295 (308)
T ss_dssp             EEEEETTEEEEE--CCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCEEEEE--cCcCCCcccceEEEEcCCCCEEeecCC
Confidence            233346788888  3211    1269999999999999843

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.54  E-value=7.2e-12  Score=111.65  Aligned_cols=230  Identities=12%  Similarity=0.151  Sum_probs=147.3

Q ss_pred             eeeeccCCcccccCCCCCCCCCCCCeEEEeeeCceEEEeecC---CCCceEEEEcCCccc---EEecCCCCCCCce----
Q 018497           70 LGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNG---SDRSLIYLWNPLIKK---YMTLPRPSLNPRY----  139 (355)
Q Consensus        70 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~GLl~l~~~~---~~~~~~~V~NP~T~~---~~~LP~~~~~~~~----  139 (355)
                      ...|++....|..++....   .......+..+|.|++..+.   .....++++||.|++   |..+++++..+..    
T Consensus        33 ~~~~d~~~~~W~~~~~~p~---~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~  109 (301)
T 2vpj_A           33 VEKYDPKTQEWSFLPSITR---KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT  109 (301)
T ss_dssp             EEEEETTTTEEEECCCCSS---CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred             EEEEcCCCCeEEeCCCCCh---hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence            3467777777877652111   11223334456666555421   123578999999999   9999988766532    


Q ss_pred             ------eEEE-EecCCCCCCcEEEE-EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEE
Q 018497          140 ------LGFG-VNSVSGHLDDFKVV-YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLI  211 (355)
Q Consensus       140 ------~~~g-~d~~~~~~~~ykvv-yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~I  211 (355)
                            +.+| ++..   ...-.+. ||..+++|+.++ .+|.......     .+.++|.+|.+++..   +......+
T Consensus       110 ~~~~~lyv~GG~~~~---~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~-----~~~~~~~iyv~GG~~---~~~~~~~~  177 (301)
T 2vpj_A          110 TLGDMIYVSGGFDGS---RRHTSMERYDPNIDQWSMLG-DMQTAREGAG-----LVVASGVIYCLGGYD---GLNILNSV  177 (301)
T ss_dssp             EETTEEEEECCBCSS---CBCCEEEEEETTTTEEEEEE-ECSSCCBSCE-----EEEETTEEEEECCBC---SSCBCCCE
T ss_pred             EECCEEEEEcccCCC---cccceEEEEcCCCCeEEECC-CCCCCcccce-----EEEECCEEEEECCCC---CCcccceE
Confidence                  2222 2211   1111222 999999999998 6775443222     678899999998754   12234679


Q ss_pred             EEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeE
Q 018497          212 VSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPL  290 (355)
Q Consensus       212 l~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~  290 (355)
                      .+||+.+++|+.+ ++| ..+   ....++..+|+|+++++..... ..-.+|.++-.  +..|.++..++....  ...
T Consensus       178 ~~~d~~~~~W~~~~~~p-~~r---~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~--~~~W~~~~~~p~~r~--~~~  248 (301)
T 2vpj_A          178 EKYDPHTGHWTNVTPMA-TKR---SGAGVALLNDHIYVVGGFDGTA-HLSSVEAYNIR--TDSWTTVTSMTTPRC--YVG  248 (301)
T ss_dssp             EEEETTTTEEEEECCCS-SCC---BSCEEEEETTEEEEECCBCSSS-BCCCEEEEETT--TTEEEEECCCSSCCB--SCE
T ss_pred             EEEeCCCCcEEeCCCCC-ccc---ccceEEEECCEEEEEeCCCCCc-ccceEEEEeCC--CCcEEECCCCCCccc--cee
Confidence            9999999999998 566 444   3456778899999998865421 13346666542  367999876665442  222


Q ss_pred             EEeeCCcEEEEEEeeCCc----eEEEEEeCCCCeEEEEE
Q 018497          291 GFTERGKIFIRGECRHGG----YGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       291 ~~~~~g~i~~~~~~~~~~----~~l~~yd~~t~~~~~v~  325 (355)
                      ++..+++||+.  ...+.    ..+..||+++++|+.+.
T Consensus       249 ~~~~~~~i~v~--GG~~~~~~~~~v~~yd~~~~~W~~~~  285 (301)
T 2vpj_A          249 ATVLRGRLYAI--AGYDGNSLLSSIECYDPIIDSWEVVT  285 (301)
T ss_dssp             EEEETTEEEEE--CCBCSSSBEEEEEEEETTTTEEEEEE
T ss_pred             EEEECCEEEEE--cCcCCCcccccEEEEcCCCCeEEEcC
Confidence            33346788888  32221    26999999999999884

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.44  E-value=1.5e-11  Score=109.96  Aligned_cols=192  Identities=17%  Similarity=0.161  Sum_probs=128.0

Q ss_pred             CceEEEEcCCcccEEecCCCCCCCce----------eEEE-EecCCCCCCcEEEE-EEcCCCceeEeccCCCceeeeccc
Q 018497          114 RSLIYLWNPLIKKYMTLPRPSLNPRY----------LGFG-VNSVSGHLDDFKVV-YSLRSNSWKNIAYGFPRSIEINRS  181 (355)
Q Consensus       114 ~~~~~V~NP~T~~~~~LP~~~~~~~~----------~~~g-~d~~~~~~~~ykvv-yss~t~~W~~~~~~~p~~~~~~~~  181 (355)
                      ...+.++||.+++|..+++++..+..          +.+| .+ .   ...-.+. ||..+++|+.++ .+|....... 
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-~---~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~-   96 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ-L---FPIKRMDCYNVVKDSWYSKL-GPPTPRDSLA-   96 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS-S---SBCCEEEEEETTTTEEEEEE-CCSSCCBSCE-
T ss_pred             CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC-C---CCcceEEEEeCCCCeEEECC-CCCcccccee-
Confidence            56789999999999999988776532          2221 11 1   1111222 999999999998 7775543322 


Q ss_pred             cccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCcc--
Q 018497          182 HINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFR--  258 (355)
Q Consensus       182 ~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~--  258 (355)
                          .+.++|.+|.+++..  .+......+..||+.+++|+.+ ++| ..+   .....+..+|+|+++++.......  
T Consensus        97 ----~~~~~~~iyv~GG~~--~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~  166 (306)
T 3ii7_A           97 ----ACAAEGKIYTSGGSE--VGNSALYLFECYDTRTESWHTKPSML-TQR---CSHGMVEANGLIYVCGGSLGNNVSGR  166 (306)
T ss_dssp             ----EEEETTEEEEECCBB--TTBSCCCCEEEEETTTTEEEEECCCS-SCC---BSCEEEEETTEEEEECCEESCTTTCE
T ss_pred             ----EEEECCEEEEECCCC--CCCcEeeeEEEEeCCCCceEeCCCCc-CCc---ceeEEEEECCEEEEECCCCCCCCccc
Confidence                678899999998754  2233456799999999999998 666 544   345677889999999876432110  


Q ss_pred             -EEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCC--ceEEEEEeCCCCeEEEEE
Q 018497          259 -SYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG--GYGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       259 -~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~--~~~l~~yd~~t~~~~~v~  325 (355)
                       .-.+|.++-.  ...|+++..++...  ....++..+++||+.|-....  ...+..||+++++|+.+.
T Consensus       167 ~~~~~~~yd~~--~~~W~~~~~~p~~r--~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~  232 (306)
T 3ii7_A          167 VLNSCEVYDPA--TETWTELCPMIEAR--KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS  232 (306)
T ss_dssp             ECCCEEEEETT--TTEEEEECCCSSCC--BSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECC
T ss_pred             ccceEEEeCCC--CCeEEECCCccchh--hcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC
Confidence             3346666642  36799987665543  222333346788888311011  125999999999999883

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.40  E-value=8.7e-11  Score=104.59  Aligned_cols=190  Identities=12%  Similarity=0.151  Sum_probs=126.8

Q ss_pred             CceEEEEcCCcccEEecCCCCCCCce----------eEEE-EecCCCCCCcEEEEEEcCCCc---eeEeccCCCceeeec
Q 018497          114 RSLIYLWNPLIKKYMTLPRPSLNPRY----------LGFG-VNSVSGHLDDFKVVYSLRSNS---WKNIAYGFPRSIEIN  179 (355)
Q Consensus       114 ~~~~~V~NP~T~~~~~LP~~~~~~~~----------~~~g-~d~~~~~~~~ykvvyss~t~~---W~~~~~~~p~~~~~~  179 (355)
                      ...++++||.|++|..+|+++..+..          +.+| .+.. ...++..+ ||..+++   |+.++ .+|......
T Consensus        30 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~-~d~~~~~~~~W~~~~-~~p~~r~~~  106 (301)
T 2vpj_A           30 IDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGR-SRLSSVEC-LDYTADEDGVWYSVA-PMNVRRGLA  106 (301)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS-CBCCCEEE-EETTCCTTCCCEEEC-CCSSCCBSC
T ss_pred             eeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCC-ccCceEEE-EECCCCCCCeeEECC-CCCCCccce
Confidence            45789999999999999987765432          2222 1111 00111111 9999999   99998 777654332


Q ss_pred             cccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCcc
Q 018497          180 RSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFR  258 (355)
Q Consensus       180 ~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~  258 (355)
                      .     .+.++|++|.+++..   +......+..||+.+++|+.+ ++| ..+   .....+..+|+|+++++.... ..
T Consensus       107 ~-----~~~~~~~lyv~GG~~---~~~~~~~~~~~d~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~-~~  173 (301)
T 2vpj_A          107 G-----ATTLGDMIYVSGGFD---GSRRHTSMERYDPNIDQWSMLGDMQ-TAR---EGAGLVVASGVIYCLGGYDGL-NI  173 (301)
T ss_dssp             E-----EEEETTEEEEECCBC---SSCBCCEEEEEETTTTEEEEEEECS-SCC---BSCEEEEETTEEEEECCBCSS-CB
T ss_pred             e-----EEEECCEEEEEcccC---CCcccceEEEEcCCCCeEEECCCCC-CCc---ccceEEEECCEEEEECCCCCC-cc
Confidence            2     678899999998754   122246799999999999998 666 544   345677789999999876542 12


Q ss_pred             EEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCC----ceEEEEEeCCCCeEEEEE
Q 018497          259 SYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG----GYGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       259 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~l~~yd~~t~~~~~v~  325 (355)
                      .-.+|.++-.  ...|+++..++...  ....++..++.||+.  ...+    ...+..||+++++|+.+.
T Consensus       174 ~~~~~~~d~~--~~~W~~~~~~p~~r--~~~~~~~~~~~i~v~--GG~~~~~~~~~v~~yd~~~~~W~~~~  238 (301)
T 2vpj_A          174 LNSVEKYDPH--TGHWTNVTPMATKR--SGAGVALLNDHIYVV--GGFDGTAHLSSVEAYNIRTDSWTTVT  238 (301)
T ss_dssp             CCCEEEEETT--TTEEEEECCCSSCC--BSCEEEEETTEEEEE--CCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             cceEEEEeCC--CCcEEeCCCCCccc--ccceEEEECCEEEEE--eCCCCCcccceEEEEeCCCCcEEECC
Confidence            3346666642  36899986665543  222333446788888  3221    125999999999999984

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.40  E-value=7.9e-11  Score=105.68  Aligned_cols=197  Identities=9%  Similarity=0.071  Sum_probs=125.7

Q ss_pred             ceEEEEcCCcccEEecCCCC-CCCce----------eEEE-EecC-CCCCCcE-E-EE-EEcCCCceeEeccCCCceeee
Q 018497          115 SLIYLWNPLIKKYMTLPRPS-LNPRY----------LGFG-VNSV-SGHLDDF-K-VV-YSLRSNSWKNIAYGFPRSIEI  178 (355)
Q Consensus       115 ~~~~V~NP~T~~~~~LP~~~-~~~~~----------~~~g-~d~~-~~~~~~y-k-vv-yss~t~~W~~~~~~~p~~~~~  178 (355)
                      ..+.++||.|++|...+.+. ..+..          +.+| +... ....... . +. ||..+++|+.++ .+|.....
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~   91 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP-PLPSPRCL   91 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC-CBSSCEES
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC-CCCcchhc
Confidence            57899999999997632221 12211          3333 3110 0001222 1 33 999999999998 77765543


Q ss_pred             ccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCc
Q 018497          179 NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTF  257 (355)
Q Consensus       179 ~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~  257 (355)
                      ..     .+.++|.+|.+++.....+......+..||+.+++|+.+ ++| ..+   .....+..+|+|+++++......
T Consensus        92 ~~-----~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~~~  162 (315)
T 4asc_A           92 FG-----LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP-YVV---YGHTVLSHMDLVYVIGGKGSDRK  162 (315)
T ss_dssp             CE-----EEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS-SCC---BSCEEEEETTEEEEECCBCTTSC
T ss_pred             ee-----EEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC-Ccc---cceeEEEECCEEEEEeCCCCCCc
Confidence            32     778899999998854101123446799999999999998 677 544   45567789999999998733222


Q ss_pred             cEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCC--ceEEEEEeCCCCeEEEEE
Q 018497          258 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG--GYGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       258 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~--~~~l~~yd~~t~~~~~v~  325 (355)
                      ..-.+|.++-.  ...|+++..++...  ....++..+++||+.|-....  ...+..||+++++|+.+.
T Consensus       163 ~~~~~~~yd~~--~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  228 (315)
T 4asc_A          163 CLNKMCVYDPK--KFEWKELAPMQTAR--SLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE  228 (315)
T ss_dssp             BCCCEEEEETT--TTEEEECCCCSSCC--BSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC
T ss_pred             ccceEEEEeCC--CCeEEECCCCCCch--hceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECC
Confidence            33456777642  36799987665543  222333446788888311011  126999999999999984

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.36  E-value=1.1e-10  Score=103.89  Aligned_cols=190  Identities=12%  Similarity=0.151  Sum_probs=126.0

Q ss_pred             ceEEEEcCCcccEEecCCCCCCCce----------eEEE-EecCCCCCCcEEEEEEcCCCceeEeccCCCceeeeccccc
Q 018497          115 SLIYLWNPLIKKYMTLPRPSLNPRY----------LGFG-VNSVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHI  183 (355)
Q Consensus       115 ~~~~V~NP~T~~~~~LP~~~~~~~~----------~~~g-~d~~~~~~~~ykvvyss~t~~W~~~~~~~p~~~~~~~~~~  183 (355)
                      ..+.++||.+++|..+++++..+..          +.+| .+.. ...++.. +||..+++|+.++ .+|.......   
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~-~~d~~~~~W~~~~-~~p~~r~~~~---  103 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGS-LRVRTVD-SYDPVKDQWTSVA-NMRDRRSTLG---  103 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSS-SBCCCEE-EEETTTTEEEEEC-CCSSCCBSCE---
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCC-ccccceE-EECCCCCceeeCC-CCCccccceE---
Confidence            4688999999999999887766432          2221 1111 0011111 1999999999998 7776543322   


Q ss_pred             cceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCC-ccEEE
Q 018497          184 NSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNT-FRSYE  261 (355)
Q Consensus       184 ~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~l~  261 (355)
                        .+.++|.+|.+++..   +......+..||+.+++|+.+ ++| ..+   .....+..+|+|+++++..... ...-.
T Consensus       104 --~~~~~~~iyv~GG~~---~~~~~~~~~~~d~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~  174 (302)
T 2xn4_A          104 --AAVLNGLLYAVGGFD---GSTGLSSVEAYNIKSNEWFHVAPMN-TRR---SSVGVGVVGGLLYAVGGYDVASRQCLST  174 (302)
T ss_dssp             --EEEETTEEEEEEEEC---SSCEEEEEEEEETTTTEEEEECCCS-SCC---BSCEEEEETTEEEEECCEETTTTEECCC
T ss_pred             --EEEECCEEEEEcCCC---CCccCceEEEEeCCCCeEeecCCCC-Ccc---cCceEEEECCEEEEEeCCCCCCCccccE
Confidence              678899999998764   122235789999999999998 666 444   3456778899999998764321 01234


Q ss_pred             EEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCc----eEEEEEeCCCCeEEEEE
Q 018497          262 LWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG----YGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       262 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~----~~l~~yd~~t~~~~~v~  325 (355)
                      +|.++-.  ...|+++..++...  ....++..+++||+.  ...++    ..+..||+++++|+.+.
T Consensus       175 ~~~yd~~--~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~yd~~~~~W~~~~  236 (302)
T 2xn4_A          175 VECYNAT--TNEWTYIAEMSTRR--SGAGVGVLNNLLYAV--GGHDGPLVRKSVEVYDPTTNAWRQVA  236 (302)
T ss_dssp             EEEEETT--TTEEEEECCCSSCC--BSCEEEEETTEEEEE--CCBSSSSBCCCEEEEETTTTEEEEEC
T ss_pred             EEEEeCC--CCcEEECCCCcccc--ccccEEEECCEEEEE--CCCCCCcccceEEEEeCCCCCEeeCC
Confidence            6666642  36799987666543  222333446788888  32211    25999999999999984

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.35  E-value=1.2e-10  Score=104.23  Aligned_cols=191  Identities=10%  Similarity=0.090  Sum_probs=125.8

Q ss_pred             CceEEEEcCCcccEEecCCCCCCCce----------eEEE-Ee---cCCCCCCcEEEEEEcCCCceeEeccCCCceeeec
Q 018497          114 RSLIYLWNPLIKKYMTLPRPSLNPRY----------LGFG-VN---SVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEIN  179 (355)
Q Consensus       114 ~~~~~V~NP~T~~~~~LP~~~~~~~~----------~~~g-~d---~~~~~~~~ykvvyss~t~~W~~~~~~~p~~~~~~  179 (355)
                      ...+.++||.+++|..+++++..+..          +.+| .+   ......++.. +||..+++|+.++ .+|......
T Consensus        38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~-~~d~~~~~W~~~~-~~p~~r~~~  115 (308)
T 1zgk_A           38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALD-CYNPMTNQWSPCA-PMSVPRNRI  115 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEE-EEETTTTEEEECC-CCSSCCBTC
T ss_pred             cceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEE-EECCCCCeEeECC-CCCcCcccc
Confidence            45789999999999999887766432          2222 21   0000011111 1999999999998 677644332


Q ss_pred             cccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCcc
Q 018497          180 RSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFR  258 (355)
Q Consensus       180 ~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~  258 (355)
                      .     .+.++|.+|.+++..   +......+..||+.+++|+.+ ++| ..+   .....+..+|+|+++++..... .
T Consensus       116 ~-----~~~~~~~iyv~GG~~---~~~~~~~~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~~-~  182 (308)
T 1zgk_A          116 G-----VGVIDGHIYAVGGSH---GCIHHNSVERYEPERDEWHLVAPML-TRR---IGVGVAVLNRLLYAVGGFDGTN-R  182 (308)
T ss_dssp             E-----EEEETTEEEEECCEE---TTEECCCEEEEETTTTEEEECCCCS-SCC---BSCEEEEETTEEEEECCBCSSC-B
T ss_pred             E-----EEEECCEEEEEcCCC---CCcccccEEEECCCCCeEeECCCCC-ccc---cceEEEEECCEEEEEeCCCCCC-c
Confidence            2     678899999998754   111235689999999999998 666 544   3456677899999998865421 1


Q ss_pred             EEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCC----ceEEEEEeCCCCeEEEEE
Q 018497          259 SYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG----GYGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       259 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~l~~yd~~t~~~~~v~  325 (355)
                      .-.+|.++-.  ...|+++..++....  ...++..+++||+.  ...+    ...+..||+++++|+.+.
T Consensus       183 ~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~~~~iyv~--GG~~~~~~~~~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          183 LNSAECYYPE--RNEWRMITAMNTIRS--GAGVCVLHNCIYAA--GGYDGQDQLNSVERYDVETETWTFVA  247 (308)
T ss_dssp             CCCEEEEETT--TTEEEECCCCSSCCB--SCEEEEETTEEEEE--CCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             CceEEEEeCC--CCeEeeCCCCCCccc--cceEEEECCEEEEE--eCCCCCCccceEEEEeCCCCcEEECC
Confidence            2346666642  367998866655432  22233346788888  3221    126999999999999884

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.31  E-value=2.4e-10  Score=104.35  Aligned_cols=217  Identities=14%  Similarity=0.131  Sum_probs=128.7

Q ss_pred             EEeeeCceEEEeecCCCCceEEEEcCC--cccEEecCCCC-CCCce----------eEEE-E-ecCCCCCCcEE----EE
Q 018497           97 VVGSCNGVLCFCSNGSDRSLIYLWNPL--IKKYMTLPRPS-LNPRY----------LGFG-V-NSVSGHLDDFK----VV  157 (355)
Q Consensus        97 ~~~s~~GLl~l~~~~~~~~~~~V~NP~--T~~~~~LP~~~-~~~~~----------~~~g-~-d~~~~~~~~yk----vv  157 (355)
                      ..+..+|.|.+..+. ....++++||.  +++|..+|+++ ..+..          +.+| + +..   .....    +.
T Consensus        14 ~~~~~~~~iyv~GG~-~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~---~~~~~~~~~v~   89 (357)
T 2uvk_A           14 TGAIDNDTVYIGLGS-AGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNS---EGLTQVFNDVH   89 (357)
T ss_dssp             EEEEETTEEEEECGG-GTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECT---TSCEEECCCEE
T ss_pred             EEEEECCEEEEEeCc-CCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCC---CccceeeccEE
Confidence            334447777666531 34579999998  49999999877 44321          2222 2 100   11111    11


Q ss_pred             -EEcCCCceeEeccCCC-ceeeeccccccceeEeCceEEEEEeeeccC-------------------------------C
Q 018497          158 -YSLRSNSWKNIAYGFP-RSIEINRSHINSSVFLNGSVHWCARFSCYH-------------------------------D  204 (355)
Q Consensus       158 -yss~t~~W~~~~~~~p-~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-------------------------------~  204 (355)
                       ||..+++|+.++ .++ ...... .    .+.++|++|.+++.....                               .
T Consensus        90 ~yd~~~~~W~~~~-~~~p~~r~~~-~----~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (357)
T 2uvk_A           90 KYNPKTNSWVKLM-SHAPMGMAGH-V----TFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED  163 (357)
T ss_dssp             EEETTTTEEEECS-CCCSSCCSSE-E----EEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred             EEeCCCCcEEECC-CCCCcccccc-e----EEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence             999999999998 555 332222 1    567999999998753000                               0


Q ss_pred             CCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCC
Q 018497          205 NSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKP  283 (355)
Q Consensus       205 ~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~  283 (355)
                      ......+.+||+.+++|+.+ ++| ....  ....++..+|+|+++++........-++|.++-......|+++..++..
T Consensus       164 ~~~~~~v~~yd~~~~~W~~~~~~p-~~~~--~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~  240 (357)
T 2uvk_A          164 YFFNKFLLSFDPSTQQWSYAGESP-WYGT--AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSP  240 (357)
T ss_dssp             GCCCCEEEEEETTTTEEEEEEECS-SCCC--BSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTT
T ss_pred             cCCcccEEEEeCCCCcEEECCCCC-CCCc--ccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCC
Confidence            00135899999999999998 677 4331  2356788899999998754311123456666522224679988766543


Q ss_pred             CceeEeEEEeeCCcEEEEEEeeCC-------------------ceEEEEEeCCCCeEEEEEE
Q 018497          284 QRIWWPLGFTERGKIFIRGECRHG-------------------GYGLLVYNPHSDTFKCIGV  326 (355)
Q Consensus       284 ~~~~~~~~~~~~g~i~~~~~~~~~-------------------~~~l~~yd~~t~~~~~v~~  326 (355)
                      .......++..+++||+.|-....                   ...+..||+++++|+.+.-
T Consensus       241 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~  302 (357)
T 2uvk_A          241 DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE  302 (357)
T ss_dssp             TCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE
T ss_pred             cccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC
Confidence            321222334456788888310010                   0248899999999999843

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.28  E-value=4.1e-10  Score=101.09  Aligned_cols=195  Identities=10%  Similarity=0.158  Sum_probs=121.9

Q ss_pred             ceEEEEcCCcccEEecCCCC-CCCce----------eEEEE---ecCCCCCCcE--EEE-EEcCCCceeEeccCCCceee
Q 018497          115 SLIYLWNPLIKKYMTLPRPS-LNPRY----------LGFGV---NSVSGHLDDF--KVV-YSLRSNSWKNIAYGFPRSIE  177 (355)
Q Consensus       115 ~~~~V~NP~T~~~~~LP~~~-~~~~~----------~~~g~---d~~~~~~~~y--kvv-yss~t~~W~~~~~~~p~~~~  177 (355)
                      ....++||.|++|...|.+. ..+..          +.+|=   +.. ......  .+. ||..+++|+.++ .+|....
T Consensus        24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~  101 (318)
T 2woz_A           24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEE-NKDQPLQSYFFQLDNVSSEWVGLP-PLPSARC  101 (318)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC--------CCCBEEEEEETTTTEEEECS-CBSSCBC
T ss_pred             cceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCcc-ccCCCccccEEEEeCCCCcEEECC-CCCcccc
Confidence            34789999999998854332 12211          33442   111 000111  132 999999999998 7776543


Q ss_pred             eccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCC
Q 018497          178 INRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNT  256 (355)
Q Consensus       178 ~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~  256 (355)
                      ...     .+.++|.+|.+++... .+......+.+||+.+++|+.+ ++| ..+   .....+..+|+|+++++.....
T Consensus       102 ~~~-----~~~~~~~iyv~GG~~~-~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~~  171 (318)
T 2woz_A          102 LFG-----LGEVDDKIYVVAGKDL-QTEASLDSVLCYDPVAAKWSEVKNLP-IKV---YGHNVISHNGMIYCLGGKTDDK  171 (318)
T ss_dssp             SCE-----EEEETTEEEEEEEEBT-TTCCEEEEEEEEETTTTEEEEECCCS-SCE---ESCEEEEETTEEEEECCEESSS
T ss_pred             ccc-----eEEECCEEEEEcCccC-CCCcccceEEEEeCCCCCEeECCCCC-Ccc---cccEEEEECCEEEEEcCCCCCC
Confidence            322     6788999999987640 0122335799999999999998 677 544   3445677899999998753211


Q ss_pred             ccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCc--eEEEEEeCCCCeEEEEE
Q 018497          257 FRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG--YGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       257 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~--~~l~~yd~~t~~~~~v~  325 (355)
                      ...-.+|.++-.  ...|+++..++...  ....++..+++||+.|-....+  ..+..||+++++|+.+.
T Consensus       172 ~~~~~~~~yd~~--~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  238 (318)
T 2woz_A          172 KCTNRVFIYNPK--KGDWKDLAPMKTPR--SMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT  238 (318)
T ss_dssp             CBCCCEEEEETT--TTEEEEECCCSSCC--BSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECC
T ss_pred             CccceEEEEcCC--CCEEEECCCCCCCc--ccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECC
Confidence            123346777642  36799987665443  2222333467888883111221  26889999999999984

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.12  E-value=3.2e-08  Score=90.12  Aligned_cols=236  Identities=12%  Similarity=0.082  Sum_probs=137.1

Q ss_pred             eeeeccC--CcccccCCC-CCCCCCCCCeEEEeeeCceEEEeecC--------CCCceEEEEcCCcccEEecCCCC-CCC
Q 018497           70 LGFYSTK--CKEFEDLCD-PPFRTQLADLDVVGSCNGVLCFCSNG--------SDRSLIYLWNPLIKKYMTLPRPS-LNP  137 (355)
Q Consensus        70 ~~~~~~~--~~~~~~~~~-p~~~~~~~~~~~~~s~~GLl~l~~~~--------~~~~~~~V~NP~T~~~~~LP~~~-~~~  137 (355)
                      ...|+..  ...|..++. |..+   ......+..+|.|.+..+.        .....+.++||.|++|..+++++ ..+
T Consensus        33 ~~~~d~~~~~~~W~~~~~~p~~~---R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r  109 (357)
T 2uvk_A           33 WYKLDTQAKDKKWTALAAFPGGP---RDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGM  109 (357)
T ss_dssp             EEEEETTSSSCCEEECCCCTTCC---CBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCC
T ss_pred             EEEEccccCCCCeeECCCCCCCc---CccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCccc
Confidence            3466655  366776642 2111   1223344556776655431        01346899999999999999876 333


Q ss_pred             ce----------eEEE-EecCCCCC---------------------------------Cc-EEEE-EEcCCCceeEeccC
Q 018497          138 RY----------LGFG-VNSVSGHL---------------------------------DD-FKVV-YSLRSNSWKNIAYG  171 (355)
Q Consensus       138 ~~----------~~~g-~d~~~~~~---------------------------------~~-ykvv-yss~t~~W~~~~~~  171 (355)
                      ..          +.+| ++..   .                                 .- -.+. ||..+++|+.++ .
T Consensus       110 ~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~  185 (357)
T 2uvk_A          110 AGHVTFVHNGKAYVTGGVNQN---IFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG-E  185 (357)
T ss_dssp             SSEEEEEETTEEEEEECCCHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE-E
T ss_pred             ccceEEEECCEEEEEeCcCCC---cCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECC-C
Confidence            11          3333 2211   0                                 00 1222 999999999998 6


Q ss_pred             CCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEc--CCceeeEe-cCCCCCCCCCCceEEEEECCeEEE
Q 018497          172 FPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDF--AKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCV  248 (355)
Q Consensus       172 ~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~--~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~  248 (355)
                      +|........    .+.++|.+|.+++..  ........+..||+  .+++|+.+ ++| .... ......+..+|+|++
T Consensus       186 ~p~~~~~~~~----~~~~~~~iyv~GG~~--~~~~~~~~v~~~d~d~~~~~W~~~~~~~-~~~~-~~~~~~~~~~~~iyv  257 (357)
T 2uvk_A          186 SPWYGTAGAA----VVNKGDKTWLINGEA--KPGLRTDAVFELDFTGNNLKWNKLAPVS-SPDG-VAGGFAGISNDSLIF  257 (357)
T ss_dssp             CSSCCCBSCE----EEEETTEEEEECCEE--ETTEECCCEEEEECC---CEEEECCCSS-TTTC-CBSCEEEEETTEEEE
T ss_pred             CCCCCccccc----EEEECCEEEEEeeec--CCCcccCceEEEEecCCCCcEEecCCCC-CCcc-cccceEEEECCEEEE
Confidence            7754333222    788999999998754  11112345777876  99999998 555 3321 134457889999999


Q ss_pred             EEecCCC----------------CccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCc---e
Q 018497          249 FATIPNN----------------TFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG---Y  309 (355)
Q Consensus       249 v~~~~~~----------------~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~---~  309 (355)
                      +++....                ......+|+++-.  +..|+++..++....  ...++..+++||+.|=...++   .
T Consensus       258 ~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~~~~i~v~GG~~~~~~~~~  333 (357)
T 2uvk_A          258 AGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH--NGKWDKSGELSQGRA--YGVSLPWNNSLLIIGGETAGGKAVT  333 (357)
T ss_dssp             ECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCB--SSEEEEETTEEEEEEEECGGGCEEE
T ss_pred             EcCccccCCcccccccceeccccccceeeEEEEecC--CCceeeCCCCCCCcc--cceeEEeCCEEEEEeeeCCCCCEee
Confidence            9875321                0112345665542  468999988776552  223344577888883110111   2


Q ss_pred             EEEEEeCCCCeEEEE
Q 018497          310 GLLVYNPHSDTFKCI  324 (355)
Q Consensus       310 ~l~~yd~~t~~~~~v  324 (355)
                      .++.+++++++|.+.
T Consensus       334 ~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          334 DSVLITVKDNKVTVQ  348 (357)
T ss_dssp             EEEEEEC-CCSCEEE
T ss_pred             eEEEEEEcCcEeEee
Confidence            689999999999776

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.09  E-value=5.1e-11  Score=76.82  Aligned_cols=41  Identities=29%  Similarity=0.599  Sum_probs=38.1

Q ss_pred             CCCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCChHH
Q 018497            4 SSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTF   44 (355)
Q Consensus         4 ~~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F   44 (355)
                      .+..||+|++.+||++||++++.++++|||+|+.++.++.|
T Consensus         8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~l   48 (53)
T 1fs1_A            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (53)
T ss_dssp             -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Confidence            56799999999999999999999999999999999998875

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.05  E-value=1.9e-08  Score=99.85  Aligned_cols=206  Identities=14%  Similarity=0.107  Sum_probs=123.6

Q ss_pred             eCceEEEeecC--CCCceEEEEcCCcccEEecC-C-----CCCCCceeEEEEe-------------cCCCCCCcEEEEEE
Q 018497          101 CNGVLCFCSNG--SDRSLIYLWNPLIKKYMTLP-R-----PSLNPRYLGFGVN-------------SVSGHLDDFKVVYS  159 (355)
Q Consensus       101 ~~GLl~l~~~~--~~~~~~~V~NP~T~~~~~LP-~-----~~~~~~~~~~g~d-------------~~~~~~~~ykvvys  159 (355)
                      .+|.|++.++.  .....++++||.|++|..++ +     ++..+..++...-             ......++..+ ||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~-yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI-FD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEE-EE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEE-Ee
Confidence            56666655431  12456899999999999988 4     2333322222111             11000111111 99


Q ss_pred             cCCCceeEeccCCCceeeeccccccceeEe-CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEec----CCCCCCCCC
Q 018497          160 LRSNSWKNIAYGFPRSIEINRSHINSSVFL-NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM----MPYDLSTDD  234 (355)
Q Consensus       160 s~t~~W~~~~~~~p~~~~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~----lP~~~~~~~  234 (355)
                      ..+++|+.++ .+|.......     .+.+ +|++|.+++..    ...  .+.+||+.+++|+.+.    +| ..+.  
T Consensus       475 ~~t~~W~~~~-~~p~~R~~h~-----~~~~~~~~iyv~GG~~----~~~--~v~~yd~~t~~W~~~~~~g~~p-~~r~--  539 (695)
T 2zwa_A          475 MKTREWSMIK-SLSHTRFRHS-----ACSLPDGNVLILGGVT----EGP--AMLLYNVTEEIFKDVTPKDEFF-QNSL--  539 (695)
T ss_dssp             TTTTEEEECC-CCSBCCBSCE-----EEECTTSCEEEECCBC----SSC--SEEEEETTTTEEEECCCSSGGG-GSCC--
T ss_pred             CCCCcEEECC-CCCCCcccce-----EEEEcCCEEEEECCCC----CCC--CEEEEECCCCceEEccCCCCCC-Cccc--
Confidence            9999999998 7776544332     5554 99999998765    112  7999999999999985    55 4432  


Q ss_pred             CceEEEEEC---CeEEEEEecCCCC-ccEEEEEEeccCCCCCC------eEEEEEecCCCceeEeEEEeeCCcEEEEEEe
Q 018497          235 ADKYLNVFD---GYLCVFATIPNNT-FRSYELWVMKEYGLTES------WTKLYTIEKPQRIWWPLGFTERGKIFIRGEC  304 (355)
Q Consensus       235 ~~~~L~~~~---G~L~~v~~~~~~~-~~~l~iW~l~~~~~~~~------W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~  304 (355)
                       ....+.++   |+|+++++..... ...-.+|.++-.  ...      |+++..++..........+.++|+||+.  .
T Consensus       540 -~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~--~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~--G  614 (695)
T 2zwa_A          540 -VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD--AENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIV--G  614 (695)
T ss_dssp             -BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEEC--TTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEE--C
T ss_pred             -ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEcc--CCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEE--C
Confidence             22223334   8999998864311 122345555532  234      8888775422212223334444789988  3


Q ss_pred             eCC-------ceEEEEEeCCCCeEEEEEEe
Q 018497          305 RHG-------GYGLLVYNPHSDTFKCIGVH  327 (355)
Q Consensus       305 ~~~-------~~~l~~yd~~t~~~~~v~~~  327 (355)
                      +.+       ...+..||+++++|+.+.+.
T Consensus       615 G~~~~~~~~~~~~v~~yd~~t~~W~~~~~p  644 (695)
T 2zwa_A          615 GTSPSGLFDRTNSIISLDPLSETLTSIPIS  644 (695)
T ss_dssp             CBCSSCCCCTTTSEEEEETTTTEEEECCCC
T ss_pred             CccCCCCCCCCCeEEEEECCCCeEEEeecc
Confidence            211       12599999999999966543

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.04  E-value=1.2e-10  Score=101.82  Aligned_cols=50  Identities=22%  Similarity=0.416  Sum_probs=46.4

Q ss_pred             CCCCCCCHHHHHHHHhcCCcccch-hhcccchhhHhhhCChHHHHHHHhcC
Q 018497            3 CSSFRLPEDVMIDIFLRLEVKNLA-RLRCVCKSWNTLLTSKTFVEIHLNQS   52 (355)
Q Consensus         3 ~~~~~LP~dll~eIL~rLP~~~l~-r~r~VcK~W~~li~~~~F~~~~~~~~   52 (355)
                      ..+..||+||+.+||+|||+++|+ ||++|||+|+++++++.|.+.+..+.
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            356799999999999999999999 99999999999999999999887765

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.92  E-value=3.7e-06  Score=78.49  Aligned_cols=277  Identities=14%  Similarity=0.128  Sum_probs=136.0

Q ss_pred             CCCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCChHHHHHHHhcCCC-CCCcEEEee-cCC---CC-ceeeeccC-
Q 018497            4 SSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMR-NPRPLLFRH-GIS---PS-YLGFYSTK-   76 (355)
Q Consensus         4 ~~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~~~~~~~~~-~~~~~~~~~-~~~---~~-~~~~~~~~-   76 (355)
                      ....||+|++..||+.|++++|+++.+|||+|+.++.++.+-+........ .+...-... ...   .. ....|... 
T Consensus        18 ~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~~   97 (445)
T 2ovr_B           18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQH   97 (445)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHH
T ss_pred             hhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhhh
Confidence            356899999999999999999999999999999999998776654432211 111000000 000   00 00011100 


Q ss_pred             --CcccccCCC--CC-CCCCCCC-eEEEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecC---
Q 018497           77 --CKEFEDLCD--PP-FRTQLAD-LDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSV---  147 (355)
Q Consensus        77 --~~~~~~~~~--p~-~~~~~~~-~~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~---  147 (355)
                        ...|..-..  .. ....... ...+...+.+|+...   .++.+.|||..+++....-..... ....+.+++.   
T Consensus        98 ~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~---~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~l~  173 (445)
T 2ovr_B           98 RIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGS---DDNTLKVWSAVTGKCLRTLVGHTG-GVWSSQMRDNIII  173 (445)
T ss_dssp             HHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEE---TTSCEEEEETTTCCEEEECCCCSS-CEEEEEEETTEEE
T ss_pred             hhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEE---CCCcEEEEECCCCcEEEEEcCCCC-CEEEEEecCCEEE
Confidence              011111110  00 0001111 233444455555444   678999999998876543222111 1123333321   


Q ss_pred             C-CCCCcEEEEEEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeE-ec
Q 018497          148 S-GHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VM  225 (355)
Q Consensus       148 ~-~~~~~ykvvyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~-i~  225 (355)
                      + +..+..++ |+.+++.-...- ......    -.   .+..++.....+..+        ..|..+|+.+.+... +.
T Consensus       174 s~~~dg~i~v-wd~~~~~~~~~~-~~h~~~----v~---~~~~~~~~l~s~s~d--------g~i~~wd~~~~~~~~~~~  236 (445)
T 2ovr_B          174 SGSTDRTLKV-WNAETGECIHTL-YGHTST----VR---CMHLHEKRVVSGSRD--------ATLRVWDIETGQCLHVLM  236 (445)
T ss_dssp             EEETTSCEEE-EETTTTEEEEEE-CCCSSC----EE---EEEEETTEEEEEETT--------SEEEEEESSSCCEEEEEE
T ss_pred             EEeCCCeEEE-EECCcCcEEEEE-CCCCCc----EE---EEEecCCEEEEEeCC--------CEEEEEECCCCcEEEEEc
Confidence            0 00222232 676665322111 000000    00   344445444443333        589999998765433 22


Q ss_pred             CCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEee
Q 018497          226 MPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR  305 (355)
Q Consensus       226 lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~  305 (355)
                      -.   .   ....-+..+|...+++..++    .+.+|.++..      .....+.........+.+  ++..++.  ..
T Consensus       237 ~~---~---~~v~~~~~~~~~l~~~~~dg----~i~iwd~~~~------~~~~~~~~~~~~v~~~~~--~~~~l~~--~~  296 (445)
T 2ovr_B          237 GH---V---AAVRCVQYDGRRVVSGAYDF----MVKVWDPETE------TCLHTLQGHTNRVYSLQF--DGIHVVS--GS  296 (445)
T ss_dssp             CC---S---SCEEEEEECSSCEEEEETTS----CEEEEEGGGT------EEEEEECCCSSCEEEEEE--CSSEEEE--EE
T ss_pred             CC---c---ccEEEEEECCCEEEEEcCCC----EEEEEECCCC------cEeEEecCCCCceEEEEE--CCCEEEE--Ee
Confidence            22   1   12333444777767666654    8899987641      233344322211222222  5555555  32


Q ss_pred             CCceEEEEEeCCCCeEE
Q 018497          306 HGGYGLLVYNPHSDTFK  322 (355)
Q Consensus       306 ~~~~~l~~yd~~t~~~~  322 (355)
                      .++ .+..||+++++..
T Consensus       297 ~d~-~i~i~d~~~~~~~  312 (445)
T 2ovr_B          297 LDT-SIRVWDVETGNCI  312 (445)
T ss_dssp             TTS-CEEEEETTTCCEE
T ss_pred             CCC-eEEEEECCCCCEE
Confidence            556 4888888777643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.87  E-value=4.2e-06  Score=78.43  Aligned_cols=43  Identities=19%  Similarity=0.405  Sum_probs=38.1

Q ss_pred             CCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCC-hHHHHHH
Q 018497            6 FRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTS-KTFVEIH   48 (355)
Q Consensus         6 ~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~-~~F~~~~   48 (355)
                      ..||+|++.+||+.||+++|+++..|||+|+.++.+ +..-+..
T Consensus        16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~   59 (464)
T 3v7d_B           16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   59 (464)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHH
T ss_pred             HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            469999999999999999999999999999999998 6554443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.78  E-value=2.3e-06  Score=79.74  Aligned_cols=277  Identities=13%  Similarity=0.153  Sum_probs=133.5

Q ss_pred             CCCCHH----HHHHHHhcCCcccchhhcccchhhHhhhCChHHHHHHHhcCC-----------CCCC-cEEEeecC----
Q 018497            6 FRLPED----VMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSM-----------RNPR-PLLFRHGI----   65 (355)
Q Consensus         6 ~~LP~d----ll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~~~~~~~~-----------~~~~-~~~~~~~~----   65 (355)
                      ..||+|    |+..||+.|++++|+++.+|||+|+.++.++.+=+....+..           ...| .+++...+    
T Consensus        12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   91 (435)
T 1p22_A           12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDGN   91 (435)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC--------
T ss_pred             HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCCCCC
Confidence            469999    999999999999999999999999999987654333322110           0011 00111100    


Q ss_pred             --CCCce-eeecc-------CCcccccCCCC---CC--CCCCCCeEEEeeeCceEEEeecCCCCceEEEEcCCcccEEec
Q 018497           66 --SPSYL-GFYST-------KCKEFEDLCDP---PF--RTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTL  130 (355)
Q Consensus        66 --~~~~~-~~~~~-------~~~~~~~~~~p---~~--~~~~~~~~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~L  130 (355)
                        ..... ..|..       ....|..-...   ..  .........+...+..+....   .++.+.|||..+++....
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~---~dg~i~iwd~~~~~~~~~  168 (435)
T 1p22_A           92 APPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGL---RDNTIKIWDKNTLECKRI  168 (435)
T ss_dssp             -CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEE---SSSCEEEEESSSCCEEEE
T ss_pred             CCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEe---CCCeEEEEeCCCCeEEEE
Confidence              00000 01110       00111111000   00  001122333444344444444   578899999998876543


Q ss_pred             CCCCCCCceeEEEEecC---C-CCCCcEEEEEEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCC
Q 018497          131 PRPSLNPRYLGFGVNSV---S-GHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNS  206 (355)
Q Consensus       131 P~~~~~~~~~~~g~d~~---~-~~~~~ykvvyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~  206 (355)
                      -..... ....+.++..   + +..+..++ |+.+++.-...- .....    .-.   .+..++.....+..+      
T Consensus       169 ~~~h~~-~v~~l~~~~~~l~sg~~dg~i~v-wd~~~~~~~~~~-~~h~~----~v~---~l~~~~~~l~s~s~d------  232 (435)
T 1p22_A          169 LTGHTG-SVLCLQYDERVIITGSSDSTVRV-WDVNTGEMLNTL-IHHCE----AVL---HLRFNNGMMVTCSKD------  232 (435)
T ss_dssp             ECCCSS-CEEEEECCSSEEEEEETTSCEEE-EESSSCCEEEEE-CCCCS----CEE---EEECCTTEEEEEETT------
T ss_pred             EcCCCC-cEEEEEECCCEEEEEcCCCeEEE-EECCCCcEEEEE-cCCCC----cEE---EEEEcCCEEEEeeCC------
Confidence            222211 1133333322   0 00222232 677665432111 10000    001   344455444443333      


Q ss_pred             CCcEEEEEEcCCceeeEe--cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC
Q 018497          207 CPWLIVSFDFAKEIFQTV--MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ  284 (355)
Q Consensus       207 ~~~~Il~fD~~~~~~~~i--~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~  284 (355)
                        ..|..+|+.+..-...  .+. ...   ....-+..+|...+++..+    ..+.+|.++..      ..+..+....
T Consensus       233 --g~i~vwd~~~~~~~~~~~~~~-~~~---~~v~~~~~~~~~l~s~~~d----g~i~vwd~~~~------~~~~~~~~~~  296 (435)
T 1p22_A          233 --RSIAVWDMASPTDITLRRVLV-GHR---AAVNVVDFDDKYIVSASGD----RTIKVWNTSTC------EFVRTLNGHK  296 (435)
T ss_dssp             --SCEEEEECSSSSCCEEEEEEC-CCS---SCEEEEEEETTEEEEEETT----SEEEEEETTTC------CEEEEEECCS
T ss_pred             --CcEEEEeCCCCCCceeeeEec-CCC---CcEEEEEeCCCEEEEEeCC----CeEEEEECCcC------cEEEEEcCCC
Confidence              5789999886653211  111 111   2233344477766666655    48999988752      2334443222


Q ss_pred             ceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 018497          285 RIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK  322 (355)
Q Consensus       285 ~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~  322 (355)
                      .....+.+  ++..++.  ...++ .+..||+++++..
T Consensus       297 ~~v~~~~~--~~~~l~~--g~~dg-~i~iwd~~~~~~~  329 (435)
T 1p22_A          297 RGIACLQY--RDRLVVS--GSSDN-TIRLWDIECGACL  329 (435)
T ss_dssp             SCEEEEEE--ETTEEEE--EETTS-CEEEEETTTCCEE
T ss_pred             CcEEEEEe--CCCEEEE--EeCCC-eEEEEECCCCCEE
Confidence            11222332  4556666  32566 4999999987653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.58  E-value=2.5e-06  Score=84.24  Aligned_cols=244  Identities=11%  Similarity=0.050  Sum_probs=132.2

Q ss_pred             eeeccCCcccccCCCCCCCCCCCCeEEEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCce-----------
Q 018497           71 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRY-----------  139 (355)
Q Consensus        71 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~-----------  139 (355)
                      ..|++..+.|..+.....+............+|.|++..+. ....+.++||.|++|..+++++..+.+           
T Consensus       222 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~-~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~i  300 (656)
T 1k3i_A          222 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN-DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV  300 (656)
T ss_dssp             EEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS-STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE
T ss_pred             EEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCC-CCCceEEecCcCCceeECCCCCccccccceEEecCCeE
Confidence            46777777776654211110111112334467887776641 334799999999999999988776533           


Q ss_pred             eEEEE-ecCCCCCCcEEEEEEcCCCceeEeccCCCceeee-ccccccceeEeCceEEEEEeeecc-CCCCCCcEEEEEEc
Q 018497          140 LGFGV-NSVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEI-NRSHINSSVFLNGSVHWCARFSCY-HDNSCPWLIVSFDF  216 (355)
Q Consensus       140 ~~~g~-d~~~~~~~~ykvvyss~t~~W~~~~~~~p~~~~~-~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~~~~Il~fD~  216 (355)
                      +.+|- .......++..+ ||..+++|+.++ ........ ....  ..+..+|.+|.++..... ........+..||+
T Consensus       301 yv~GG~~~~~~~~~~~e~-yd~~t~~W~~~~-~~~~~p~~~~~~~--~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~  376 (656)
T 1k3i_A          301 FTIGGSWSGGVFEKNGEV-YSPSSKTWTSLP-NAKVNPMLTADKQ--GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYT  376 (656)
T ss_dssp             EEECCCCCSSSCCCCEEE-EETTTTEEEEET-TSCSGGGCCCCTT--GGGTTTCSCCEEECGGGCEEECCSSSEEEEEEC
T ss_pred             EEEeCcccCCcccccceE-eCCCCCcceeCC-Ccccccccccccc--ceeecCCceEEEECCCCcEEEecCccceeeeec
Confidence            22221 110000112222 999999999985 22111100 0111  145578888888754310 00112457999999


Q ss_pred             CCceeeEe-cCCCCC-----CCCCCceEEE--EECCeEEEEEecCCC-----CccEEEEEEeccCCCCCCeEEEE--Eec
Q 018497          217 AKEIFQTV-MMPYDL-----STDDADKYLN--VFDGYLCVFATIPNN-----TFRSYELWVMKEYGLTESWTKLY--TIE  281 (355)
Q Consensus       217 ~~~~~~~i-~lP~~~-----~~~~~~~~L~--~~~G~L~~v~~~~~~-----~~~~l~iW~l~~~~~~~~W~~~~--~i~  281 (355)
                      .++.|... ..+ ..     ........++  ..+|+|+++++....     ......|+..+.  ....|.+..  .++
T Consensus       377 ~~~~w~~~~~~~-~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~mp  453 (656)
T 1k3i_A          377 SGSGDVKSAGKR-QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP--GTSPNTVFASNGLY  453 (656)
T ss_dssp             STTCEEEEEEEC-EETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST--TSCCEEEECTTCCS
T ss_pred             CCcceeecCCcc-ccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC--CCCCeeEEccCCCC
Confidence            99998653 211 11     0000111111  358999999875320     011224444443  245798875  555


Q ss_pred             CCCceeEeEEEeeCCcEEEEEEeeCC----------ceEEEEEeCCCCeEEEEE
Q 018497          282 KPQRIWWPLGFTERGKIFIRGECRHG----------GYGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       282 ~~~~~~~~~~~~~~g~i~~~~~~~~~----------~~~l~~yd~~t~~~~~v~  325 (355)
                      ... ......+..+|+||+.  ...+          ...+..||+++++|+.+.
T Consensus       454 ~~R-~~~~~~~l~~g~i~v~--GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~  504 (656)
T 1k3i_A          454 FAR-TFHTSVVLPDGSTFIT--GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  504 (656)
T ss_dssp             SCC-BSCEEEECTTSCEEEE--CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             CCc-ccCCeEECCCCCEEEE--CCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence            443 1222333447899998  3211          125899999999998864

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=98.37  E-value=7.4e-06  Score=81.32  Aligned_cols=150  Identities=7%  Similarity=0.010  Sum_probs=99.2

Q ss_pred             EEcCCCceeEeccC-----CCceeeeccccccceeEe--CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCC
Q 018497          158 YSLRSNSWKNIAYG-----FPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYD  229 (355)
Q Consensus       158 yss~t~~W~~~~~~-----~p~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~  229 (355)
                      ||..+++|+.++..     +|.......     .+.+  +|.+|.+++..  ........+..||+.+++|+.+ ++| .
T Consensus       417 yd~~~~~W~~~~~~~p~~~~p~~R~~hs-----~~~~~~~~~lyv~GG~~--~~~~~~~dv~~yd~~t~~W~~~~~~p-~  488 (695)
T 2zwa_A          417 LSIHYDKIDMKNIEVSSSEVPVARMCHT-----FTTISRNNQLLLIGGRK--APHQGLSDNWIFDMKTREWSMIKSLS-H  488 (695)
T ss_dssp             EEECSSCEEEEECCCCCSCCCCCCBSCE-----EEEETTTTEEEEECCBS--STTCBCCCCEEEETTTTEEEECCCCS-B
T ss_pred             EECCCCeEEEeccCCCCCCCCccccceE-----EEEEccCCEEEEEcCCC--CCCCccccEEEEeCCCCcEEECCCCC-C
Confidence            99999999988722     343332222     6778  99999998765  1111235689999999999998 677 5


Q ss_pred             CCCCCCceEEEEE-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEE---ecCCCceeEeEEEeeC-CcEEEEEEe
Q 018497          230 LSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYT---IEKPQRIWWPLGFTER-GKIFIRGEC  304 (355)
Q Consensus       230 ~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~---i~~~~~~~~~~~~~~~-g~i~~~~~~  304 (355)
                      .+   .....+.. +|+|+++++....   . .+|..+-.  ...|+.+..   ++........+.+..+ +.||+.  .
T Consensus       489 ~R---~~h~~~~~~~~~iyv~GG~~~~---~-~v~~yd~~--t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~--G  557 (695)
T 2zwa_A          489 TR---FRHSACSLPDGNVLILGGVTEG---P-AMLLYNVT--EEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL--G  557 (695)
T ss_dssp             CC---BSCEEEECTTSCEEEECCBCSS---C-SEEEEETT--TTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE--C
T ss_pred             Cc---ccceEEEEcCCEEEEECCCCCC---C-CEEEEECC--CCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE--C
Confidence            44   34455664 9999999987652   2 67777653  367998765   3333311221332333 678888  3


Q ss_pred             eC--Cc----eEEEEEeCCCCe------EEEEEE
Q 018497          305 RH--GG----YGLLVYNPHSDT------FKCIGV  326 (355)
Q Consensus       305 ~~--~~----~~l~~yd~~t~~------~~~v~~  326 (355)
                      +.  ++    ..+..||+++++      |+.+.-
T Consensus       558 G~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~  591 (695)
T 2zwa_A          558 GGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ  591 (695)
T ss_dssp             CBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE
T ss_pred             CcCCCCCeeeCcEEEEEccCCccccceEEEEcCC
Confidence            22  11    269999999999      777754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.18  E-value=8.4e-06  Score=80.42  Aligned_cols=147  Identities=14%  Similarity=0.133  Sum_probs=93.7

Q ss_pred             EEcCCCceeEeccCCCceeeeccccccceeEe--CceEEEEEeeeccC-C--CCCCcEEEEEEcCCceeeEe-cCCCCCC
Q 018497          158 YSLRSNSWKNIAYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYH-D--NSCPWLIVSFDFAKEIFQTV-MMPYDLS  231 (355)
Q Consensus       158 yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~-~--~~~~~~Il~fD~~~~~~~~i-~lP~~~~  231 (355)
                      |+..+++|+.+. .+|...  . .    .+++  +|++|.+++..... +  ......+..||+.+++|+.+ .+| ...
T Consensus       171 ~dp~~~~W~~~~-~~P~~~--~-~----~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-~~~  241 (656)
T 1k3i_A          171 PQPGLGRWGPTI-DLPIVP--A-A----AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-TKH  241 (656)
T ss_dssp             CCTTSCEEEEEE-ECSSCC--S-E----EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-CSC
T ss_pred             CCCCCCeeeeec-cCCCCc--e-e----EEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-CCC
Confidence            889999999887 666522  1 1    4445  99999998754100 0  11224689999999999877 455 333


Q ss_pred             CCCCceEEE-EECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEee-CCc-
Q 018497          232 TDDADKYLN-VFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR-HGG-  308 (355)
Q Consensus       232 ~~~~~~~L~-~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~-~~~-  308 (355)
                      .. .....+ ..+|+|+++++...   ..+.+|-.+.    ..|++...++... .....++..+|+||+.  .. .++ 
T Consensus       242 ~~-~~~~~~~~~~g~lyv~GG~~~---~~v~~yd~~t----~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~--GG~~~~~  310 (656)
T 1k3i_A          242 DM-FCPGISMDGNGQIVVTGGNDA---KKTSLYDSSS----DSWIPGPDMQVAR-GYQSSATMSDGRVFTI--GGSWSGG  310 (656)
T ss_dssp             CC-SSCEEEECTTSCEEEECSSST---TCEEEEEGGG----TEEEECCCCSSCC-SSCEEEECTTSCEEEE--CCCCCSS
T ss_pred             CC-ccccccCCCCCCEEEeCCCCC---CceEEecCcC----CceeECCCCCccc-cccceEEecCCeEEEE--eCcccCC
Confidence            21 222233 45799999998655   3444444332    5799876655443 2222333347899998  42 111 


Q ss_pred             ---eEEEEEeCCCCeEEEE
Q 018497          309 ---YGLLVYNPHSDTFKCI  324 (355)
Q Consensus       309 ---~~l~~yd~~t~~~~~v  324 (355)
                         ..+..||+++++|+.+
T Consensus       311 ~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          311 VFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             SCCCCEEEEETTTTEEEEE
T ss_pred             cccccceEeCCCCCcceeC
Confidence               2699999999999987

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.82  E-value=1e-05  Score=70.04  Aligned_cols=50  Identities=24%  Similarity=0.333  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCChHHHHHHHhcCCC
Q 018497            5 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMR   54 (355)
Q Consensus         5 ~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~~~~~~~~~   54 (355)
                      ...||+|++..||+.|++++|+++.+|||+||.+..++..=+.+..+..+
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~   54 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP   54 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGG
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCC
Confidence            35799999999999999999999999999999999999887766665533

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.56  E-value=3e-05  Score=69.52  Aligned_cols=40  Identities=30%  Similarity=0.597  Sum_probs=37.0

Q ss_pred             CCCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCChH
Q 018497            4 SSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKT   43 (355)
Q Consensus         4 ~~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~   43 (355)
                      .+..||+|++.+||.+|+.+++.+++.|||+|+.+..++.
T Consensus         8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~   47 (336)
T 2ast_B            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES   47 (336)
T ss_dssp             CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred             ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence            4679999999999999999999999999999999987664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.01  E-value=0.00021  Score=69.24  Aligned_cols=36  Identities=28%  Similarity=0.590  Sum_probs=29.5

Q ss_pred             CCCCCCCHHHHHHHHhcCC-cccchhhcccchhhHhh
Q 018497            3 CSSFRLPEDVMIDIFLRLE-VKNLARLRCVCKSWNTL   38 (355)
Q Consensus         3 ~~~~~LP~dll~eIL~rLP-~~~l~r~r~VcK~W~~l   38 (355)
                      ..+..||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            3467899999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.76  E-value=0.00042  Score=67.09  Aligned_cols=35  Identities=20%  Similarity=0.446  Sum_probs=32.5

Q ss_pred             CCCCCCHHHHHHHHhcC-CcccchhhcccchhhHhh
Q 018497            4 SSFRLPEDVMIDIFLRL-EVKNLARLRCVCKSWNTL   38 (355)
Q Consensus         4 ~~~~LP~dll~eIL~rL-P~~~l~r~r~VcK~W~~l   38 (355)
                      ....||||++.+||.+| |.+++.+++.|||+|+.+
T Consensus        12 ~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           12 SCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             ccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            34589999999999999 899999999999999987

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.26  Score=43.53  Aligned_cols=69  Identities=7%  Similarity=0.154  Sum_probs=45.7

Q ss_pred             CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeC---CcEEEEEEeeCCceEEEEEeCCCC
Q 018497          243 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTER---GKIFIRGECRHGGYGLLVYNPHSD  319 (355)
Q Consensus       243 ~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~---g~i~~~~~~~~~~~~l~~yd~~t~  319 (355)
                      +|.+.++...++    .+.+|.+...  ...|.....+.........+.+..+   +.+++.  ...++ .+.+||++++
T Consensus       171 ~~~~l~~~~~dg----~i~i~d~~~~--~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s--~~~dg-~i~iwd~~~~  241 (379)
T 3jrp_A          171 ESRKFVTGGADN----LVKIWKYNSD--AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDR-TCIIWTQDNE  241 (379)
T ss_dssp             TTCEEEEEETTS----CEEEEEEETT--TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTS-CEEEEEESST
T ss_pred             CCCEEEEEeCCC----eEEEEEecCC--CcceeeEEEEecccCcEeEEEECCCCCCCCeEEE--EeCCC-EEEEEeCCCC
Confidence            467767666654    8999999853  3457776666543323555666777   666766  43566 4899998886


Q ss_pred             e
Q 018497          320 T  320 (355)
Q Consensus       320 ~  320 (355)
                      .
T Consensus       242 ~  242 (379)
T 3jrp_A          242 Q  242 (379)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.17  E-value=0.51  Score=40.11  Aligned_cols=185  Identities=9%  Similarity=-0.008  Sum_probs=95.7

Q ss_pred             EEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcE-------EEE-EEcCCCceeEe
Q 018497           97 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDF-------KVV-YSLRSNSWKNI  168 (355)
Q Consensus        97 ~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~y-------kvv-yss~t~~W~~~  168 (355)
                      +.-..+|.|.+...  ....++++|| +++...+..+.......++.+|+.   ..-|       .|. |+. ++..+..
T Consensus       104 i~~~~~g~l~v~~~--~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~-~g~~~~~  176 (299)
T 2z2n_A          104 ITEGPNGDIWFTEM--NGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD---NALWFTENQNNAIGRITE-SGDITEF  176 (299)
T ss_dssp             EEECTTSCEEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECT-TCCEEEE
T ss_pred             eEECCCCCEEEEec--CCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC---CCEEEEeCCCCEEEEEcC-CCcEEEe
Confidence            33345677766653  4678999999 777665543322222356666654   3211       111 666 5666544


Q ss_pred             ccCCCceeeeccccccceeEe--CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CCe
Q 018497          169 AYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGY  245 (355)
Q Consensus       169 ~~~~p~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G~  245 (355)
                      .  .+....  ...   ++.+  +|.+|+.....        ..|..||+ ++++..+.+| ....  ....++.. +|+
T Consensus       177 ~--~~~~~~--~~~---~i~~~~~g~l~v~~~~~--------~~i~~~~~-~g~~~~~~~~-~~~~--~~~~i~~~~~g~  237 (299)
T 2z2n_A          177 K--IPTPAS--GPV---GITKGNDDALWFVEIIG--------NKIGRITT-SGEITEFKIP-TPNA--RPHAITAGAGID  237 (299)
T ss_dssp             E--CSSTTC--CEE---EEEECTTSSEEEEETTT--------TEEEEECT-TCCEEEEECS-STTC--CEEEEEECSTTC
T ss_pred             e--CCCCCC--cce---eEEECCCCCEEEEccCC--------ceEEEECC-CCcEEEEECC-CCCC--CceeEEECCCCC
Confidence            3  111000  011   3333  57876655432        58999999 7777776555 3221  22334443 478


Q ss_pred             EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 018497          246 LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK  322 (355)
Q Consensus       246 L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~  322 (355)
                      |++.....    ..+.++..+     .. ...+.++........+.+ .+|.|++.  . ..+ .+..||+++++++
T Consensus       238 l~v~~~~~----~~i~~~d~~-----g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~--~-~~~-~l~~~~~~~~~~~  299 (299)
T 2z2n_A          238 LWFTEWGA----NKIGRLTSN-----NI-IEEYPIQIKSAEPHGICF-DGETIWFA--M-ECD-KIGKLTLIKDNME  299 (299)
T ss_dssp             EEEEETTT----TEEEEEETT-----TE-EEEEECSSSSCCEEEEEE-CSSCEEEE--E-TTT-EEEEEEEC-----
T ss_pred             EEEeccCC----ceEEEECCC-----Cc-eEEEeCCCCCCccceEEe-cCCCEEEE--e-cCC-cEEEEEcCcccCC
Confidence            87776443    355555431     11 122223321112344555 77889888  5 445 4999999988754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=95.79  E-value=0.74  Score=38.83  Aligned_cols=115  Identities=11%  Similarity=0.064  Sum_probs=73.9

Q ss_pred             ee-EeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEE
Q 018497          186 SV-FLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELW  263 (355)
Q Consensus       186 ~v-~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW  263 (355)
                      ++ +.+|.||.-.+..      .+..|..+|+.+++. ..+++| ...   ...-++..+++|+++...++    .  +|
T Consensus        25 GL~~~~~~LyestG~~------g~S~v~~vD~~tgkv~~~~~l~-~~~---fgeGi~~~~~~ly~ltw~~~----~--v~   88 (243)
T 3mbr_X           25 GLFYLRGHLYESTGET------GRSSVRKVDLETGRILQRAEVP-PPY---FGAGIVAWRDRLIQLTWRNH----E--GF   88 (243)
T ss_dssp             EEEEETTEEEEEECCT------TSCEEEEEETTTCCEEEEEECC-TTC---CEEEEEEETTEEEEEESSSS----E--EE
T ss_pred             cEEEECCEEEEECCCC------CCceEEEEECCCCCEEEEEeCC-CCc---ceeEEEEeCCEEEEEEeeCC----E--EE
Confidence            44 5566777655442      356899999998877 556887 543   34457778899999876543    4  45


Q ss_pred             EeccCCCCCCeEEEEEecCCCceeEeEEEeeCC-cEEEEEEeeCCceEEEEEeCCCCeE-EEEEEe
Q 018497          264 VMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSDTF-KCIGVH  327 (355)
Q Consensus       264 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~~l~~yd~~t~~~-~~v~~~  327 (355)
                      +.+-    ..-.++.+|+...   ...+++.+| .+|+.  . ... .+..+|++|.+. +.+.+.
T Consensus        89 v~D~----~tl~~~~ti~~~~---~Gwglt~dg~~L~vS--d-gs~-~l~~iDp~t~~~~~~I~V~  143 (243)
T 3mbr_X           89 VYDL----ATLTPRARFRYPG---EGWALTSDDSHLYMS--D-GTA-VIRKLDPDTLQQVGSIKVT  143 (243)
T ss_dssp             EEET----TTTEEEEEEECSS---CCCEEEECSSCEEEE--C-SSS-EEEEECTTTCCEEEEEECE
T ss_pred             EEEC----CcCcEEEEEeCCC---CceEEeeCCCEEEEE--C-CCC-eEEEEeCCCCeEEEEEEEc
Confidence            5553    2346677777653   234555566 45555  4 334 699999999765 556554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=95.69  E-value=0.91  Score=39.12  Aligned_cols=197  Identities=11%  Similarity=0.095  Sum_probs=100.2

Q ss_pred             eeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcEE------EE-EEcCCCceeEeccCC
Q 018497          100 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFK------VV-YSLRSNSWKNIAYGF  172 (355)
Q Consensus       100 s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~yk------vv-yss~t~~W~~~~~~~  172 (355)
                      ..+|-|++.+.  ...+++.+||.+++...+..+.   ...++.+++.   .+ +-      |. |+.++++++.+. ..
T Consensus        22 ~~~~~l~~~d~--~~~~i~~~d~~~~~~~~~~~~~---~~~~i~~~~d---G~-l~v~~~~~l~~~d~~~g~~~~~~-~~   91 (297)
T 3g4e_A           22 EVSNSLLFVDI--PAKKVCRWDSFTKQVQRVTMDA---PVSSVALRQS---GG-YVATIGTKFCALNWKEQSAVVLA-TV   91 (297)
T ss_dssp             TTTTEEEEEET--TTTEEEEEETTTCCEEEEECSS---CEEEEEEBTT---SS-EEEEETTEEEEEETTTTEEEEEE-EC
T ss_pred             CCCCEEEEEEC--CCCEEEEEECCCCcEEEEeCCC---ceEEEEECCC---CC-EEEEECCeEEEEECCCCcEEEEE-ec
Confidence            33565655553  5678999999998776543321   1245666664   33 22      21 898888888765 32


Q ss_pred             CceeeeccccccceeE--eCceEEEEEeeeccC---CCCCCcEEEEEEcCCceeeEe---cCCCCCCCCCCceEEEEE-C
Q 018497          173 PRSIEINRSHINSSVF--LNGSVHWCARFSCYH---DNSCPWLIVSFDFAKEIFQTV---MMPYDLSTDDADKYLNVF-D  243 (355)
Q Consensus       173 p~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~---~~~~~~~Il~fD~~~~~~~~i---~lP~~~~~~~~~~~L~~~-~  243 (355)
                      +........+   .+.  -+|.+|+-.......   .......|..+|.....-...   ..|         -.++.. +
T Consensus        92 ~~~~~~~~~~---di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~p---------ngi~~spd  159 (297)
T 3g4e_A           92 DNDKKNNRFN---DGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDIS---------NGLDWSLD  159 (297)
T ss_dssp             CTTCSSEEEE---EEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBE---------EEEEECTT
T ss_pred             CCCCCCCCCC---CEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccc---------cceEEcCC
Confidence            2111111111   232  378876644332000   012345788888864322221   222         123333 3


Q ss_pred             C-eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEe-cCCCc--eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCC
Q 018497          244 G-YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI-EKPQR--IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSD  319 (355)
Q Consensus       244 G-~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~  319 (355)
                      | .|+++....    ..+.+|.++..  .........+ .....  ...-+++..+|.|++.  ...++ .|..||++++
T Consensus       160 g~~lyv~~~~~----~~i~~~~~d~~--~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva--~~~~~-~v~~~d~~tG  230 (297)
T 3g4e_A          160 HKIFYYIDSLS----YSVDAFDYDLQ--TGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA--CYNGG-RVIRLDPVTG  230 (297)
T ss_dssp             SCEEEEEEGGG----TEEEEEEECTT--TCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE--EETTT-EEEEECTTTC
T ss_pred             CCEEEEecCCC----CcEEEEeccCC--CCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE--EcCCC-EEEEEcCCCc
Confidence            5 466665543    36666655421  1223322211 11111  2233555667889888  52345 5999999966


Q ss_pred             eE-EEEEEe
Q 018497          320 TF-KCIGVH  327 (355)
Q Consensus       320 ~~-~~v~~~  327 (355)
                      ++ ..+...
T Consensus       231 ~~~~~i~~p  239 (297)
T 3g4e_A          231 KRLQTVKLP  239 (297)
T ss_dssp             CEEEEEECS
T ss_pred             eEEEEEECC
Confidence            54 555554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=95.67  E-value=1  Score=39.55  Aligned_cols=195  Identities=8%  Similarity=0.025  Sum_probs=100.3

Q ss_pred             CceEEEeecC--CCCceEEEEcCCcccEEe-cCC----CCCCCceeEEEEecCC-----CCCCcEEEEEEcCCCce-eEe
Q 018497          102 NGVLCFCSNG--SDRSLIYLWNPLIKKYMT-LPR----PSLNPRYLGFGVNSVS-----GHLDDFKVVYSLRSNSW-KNI  168 (355)
Q Consensus       102 ~GLl~l~~~~--~~~~~~~V~NP~T~~~~~-LP~----~~~~~~~~~~g~d~~~-----~~~~~ykvvyss~t~~W-~~~  168 (355)
                      +|++.+....  .....+.++||.|++... ++.    .+......++.++...     ...+.-.+ +|..+++- +.+
T Consensus         2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~v-iD~~t~~~~~~i   80 (328)
T 3dsm_A            2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFA-IDINTFKEVGRI   80 (328)
T ss_dssp             CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEE-EETTTCCEEEEE
T ss_pred             CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEE-EECcccEEEEEc
Confidence            4666655421  236789999999998764 211    0111101223333210     00111111 77776654 223


Q ss_pred             ccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceee-EecCCCCCCC-CCCceEEEEECCeE
Q 018497          169 AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLST-DDADKYLNVFDGYL  246 (355)
Q Consensus       169 ~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~-~i~lP~~~~~-~~~~~~L~~~~G~L  246 (355)
                      + .... .  ..-    .+.-+|.+|......        ..|.++|+.+.+.. .++++ .... ......++..+|+|
T Consensus        81 ~-~~~~-p--~~i----~~~~~g~lyv~~~~~--------~~v~~iD~~t~~~~~~i~~g-~~~~~~~~p~~i~~~~~~l  143 (328)
T 3dsm_A           81 T-GFTS-P--RYI----HFLSDEKAYVTQIWD--------YRIFIINPKTYEITGYIECP-DMDMESGSTEQMVQYGKYV  143 (328)
T ss_dssp             E-CCSS-E--EEE----EEEETTEEEEEEBSC--------SEEEEEETTTTEEEEEEECT-TCCTTTCBCCCEEEETTEE
T ss_pred             C-CCCC-C--cEE----EEeCCCeEEEEECCC--------CeEEEEECCCCeEEEEEEcC-CccccCCCcceEEEECCEE
Confidence            2 1111 1  100    222588988877333        48999999998875 45665 3110 00112344478899


Q ss_pred             EEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCC---------ceEEEEEeCC
Q 018497          247 CVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG---------GYGLLVYNPH  317 (355)
Q Consensus       247 ~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~---------~~~l~~yd~~  317 (355)
                      ++......   ..+.++-++.    .  ....+++... ...-+.+..+|++++.  ...+         ...+..+|++
T Consensus       144 yv~~~~~~---~~v~viD~~t----~--~~~~~i~~g~-~p~~i~~~~dG~l~v~--~~~~~~~~~~~~~~~~v~~id~~  211 (328)
T 3dsm_A          144 YVNCWSYQ---NRILKIDTET----D--KVVDELTIGI-QPTSLVMDKYNKMWTI--TDGGYEGSPYGYEAPSLYRIDAE  211 (328)
T ss_dssp             EEEECTTC---CEEEEEETTT----T--EEEEEEECSS-CBCCCEECTTSEEEEE--BCCBCTTCSSCBCCCEEEEEETT
T ss_pred             EEEcCCCC---CEEEEEECCC----C--eEEEEEEcCC-CccceEEcCCCCEEEE--ECCCccCCccccCCceEEEEECC
Confidence            88865212   3665555443    2  2233343322 1223556677898888  5222         1259999999


Q ss_pred             CCeEE-EEEE
Q 018497          318 SDTFK-CIGV  326 (355)
Q Consensus       318 t~~~~-~v~~  326 (355)
                      ++++. .+.+
T Consensus       212 t~~v~~~~~~  221 (328)
T 3dsm_A          212 TFTVEKQFKF  221 (328)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCeEEEEEec
Confidence            99876 4444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.55  E-value=0.32  Score=41.55  Aligned_cols=115  Identities=14%  Similarity=0.072  Sum_probs=72.0

Q ss_pred             eEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEe
Q 018497          187 VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM  265 (355)
Q Consensus       187 v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l  265 (355)
                      .+.+|.||.-++..      .+..|..+|+.+.+. ..+++| ...   +..-++..+++|+++...++    .  +|+.
T Consensus        49 ~~~~~~LyestG~~------g~S~v~~vD~~Tgkv~~~~~l~-~~~---FgeGit~~g~~ly~ltw~~~----~--v~v~  112 (262)
T 3nol_A           49 FYRNGYFYESTGLN------GRSSIRKVDIESGKTLQQIELG-KRY---FGEGISDWKDKIVGLTWKNG----L--GFVW  112 (262)
T ss_dssp             EEETTEEEEEEEET------TEEEEEEECTTTCCEEEEEECC-TTC---CEEEEEEETTEEEEEESSSS----E--EEEE
T ss_pred             EEECCEEEEECCCC------CCceEEEEECCCCcEEEEEecC-Ccc---ceeEEEEeCCEEEEEEeeCC----E--EEEE
Confidence            34578888766553      235899999998876 555777 432   33457778899999976543    4  4555


Q ss_pred             ccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE-EEEEEe
Q 018497          266 KEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF-KCIGVH  327 (355)
Q Consensus       266 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~-~~v~~~  327 (355)
                      +-    ..-.++.+|+...   ...++..+|+.++.  . ++...+..+|++|.+. ..|.+.
T Consensus       113 D~----~t~~~~~ti~~~~---eG~glt~dg~~L~~--S-dGs~~i~~iDp~T~~v~~~I~V~  165 (262)
T 3nol_A          113 NI----RNLRQVRSFNYDG---EGWGLTHNDQYLIM--S-DGTPVLRFLDPESLTPVRTITVT  165 (262)
T ss_dssp             ET----TTCCEEEEEECSS---CCCCEEECSSCEEE--C-CSSSEEEEECTTTCSEEEEEECE
T ss_pred             EC----ccCcEEEEEECCC---CceEEecCCCEEEE--E-CCCCeEEEEcCCCCeEEEEEEec
Confidence            53    2245666676543   22445556655555  3 3233699999998665 556553

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=95.28  E-value=1.5  Score=38.95  Aligned_cols=179  Identities=8%  Similarity=0.000  Sum_probs=94.9

Q ss_pred             CCceEEEEcCCcccEEecCCCCCC-CceeEEEEecCCCCCCcEEEE---------EEcCCCceeEeccCCCceeeecccc
Q 018497          113 DRSLIYLWNPLIKKYMTLPRPSLN-PRYLGFGVNSVSGHLDDFKVV---------YSLRSNSWKNIAYGFPRSIEINRSH  182 (355)
Q Consensus       113 ~~~~~~V~NP~T~~~~~LP~~~~~-~~~~~~g~d~~~~~~~~ykvv---------yss~t~~W~~~~~~~p~~~~~~~~~  182 (355)
                      .++.+.|||..+++....-..... .....+.+.|.   .+.+-+.         ++.+++..+... ............
T Consensus        94 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~v~~~  169 (383)
T 3ei3_B           94 KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF---NTNQLFVSSIRGATTLRDFSGSVIQVFA-KTDSWDYWYCCV  169 (383)
T ss_dssp             BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT---EEEEEEEEETTTEEEEEETTSCEEEEEE-CCCCSSCCEEEE
T ss_pred             CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC---CCCEEEEEeCCCEEEEEECCCCceEEEe-ccCCCCCCeEEE
Confidence            467899999998777655433222 22255556552   2111111         777766555554 211100000000


Q ss_pred             ccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEEC-Ce-EEEEEecCCCCccEE
Q 018497          183 INSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFD-GY-LCVFATIPNNTFRSY  260 (355)
Q Consensus       183 ~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~-G~-L~~v~~~~~~~~~~l  260 (355)
                         ...-+|.....+..+        ..|..+|+..+....+... ..    ....+.-.. |+ +.+.+..+    ..+
T Consensus       170 ---~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~h-~~----~v~~~~~~~~~~~~l~s~~~d----~~i  229 (383)
T 3ei3_B          170 ---DVSVSRQMLATGDST--------GRLLLLGLDGHEIFKEKLH-KA----KVTHAEFNPRCDWLMATSSVD----ATV  229 (383)
T ss_dssp             ---EEETTTTEEEEEETT--------SEEEEEETTSCEEEEEECS-SS----CEEEEEECSSCTTEEEEEETT----SEE
T ss_pred             ---EECCCCCEEEEECCC--------CCEEEEECCCCEEEEeccC-CC----cEEEEEECCCCCCEEEEEeCC----CEE
Confidence               223355544444433        5899999976665555422 11    112233222 55 66666655    499


Q ss_pred             EEEEeccCCCCCCeEEEEEecCCCceeEeEEEee-CCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497          261 ELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTE-RGKIFIRGECRHGGYGLLVYNPHSDTF  321 (355)
Q Consensus       261 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~~~~~~~~~l~~yd~~t~~~  321 (355)
                      .+|.+.......  .....+.... ....+.+.. +|..++.  ...++ .+.+||+++.+.
T Consensus       230 ~iwd~~~~~~~~--~~~~~~~~~~-~v~~~~~s~~~~~~l~~--~~~d~-~i~iwd~~~~~~  285 (383)
T 3ei3_B          230 KLWDLRNIKDKN--SYIAEMPHEK-PVNAAYFNPTDSTKLLT--TDQRN-EIRVYSSYDWSK  285 (383)
T ss_dssp             EEEEGGGCCSTT--CEEEEEECSS-CEEEEEECTTTSCEEEE--EESSS-EEEEEETTBTTS
T ss_pred             EEEeCCCCCccc--ceEEEecCCC-ceEEEEEcCCCCCEEEE--EcCCC-cEEEEECCCCcc
Confidence            999998632212  3333333322 355566777 7777776  43566 599999988654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.02  E-value=0.46  Score=47.19  Aligned_cols=69  Identities=7%  Similarity=0.154  Sum_probs=45.2

Q ss_pred             CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeC---CcEEEEEEeeCCceEEEEEeCCCC
Q 018497          243 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTER---GKIFIRGECRHGGYGLLVYNPHSD  319 (355)
Q Consensus       243 ~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~---g~i~~~~~~~~~~~~l~~yd~~t~  319 (355)
                      +|.+.+++..++    .+.+|.+...  ...+.....+.........+.+..+   |.+++.  ...++ .+.+||++++
T Consensus       169 d~~~l~sgs~dg----~I~iwd~~~~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s--~s~Dg-~I~iwd~~~~  239 (753)
T 3jro_A          169 ESRKFVTGGADN----LVKIWKYNSD--AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDR-TCIIWTQDNE  239 (753)
T ss_dssp             GGCCEEEEETTS----CEEEEEEETT--TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EESSS-CEEEEEESSS
T ss_pred             CCCEEEEEECCC----eEEEEeccCC--cccceeeeeecCCCCcEEEEEeccCCCCCCEEEE--EecCC-EEEEecCCCC
Confidence            366666666654    8999999863  2456666666543323555666777   777777  43566 4999999886


Q ss_pred             e
Q 018497          320 T  320 (355)
Q Consensus       320 ~  320 (355)
                      +
T Consensus       240 ~  240 (753)
T 3jro_A          240 Q  240 (753)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=94.85  E-value=0.64  Score=40.79  Aligned_cols=149  Identities=9%  Similarity=-0.012  Sum_probs=79.6

Q ss_pred             cEEEE-EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecC-CCCC
Q 018497          153 DFKVV-YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMM-PYDL  230 (355)
Q Consensus       153 ~ykvv-yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~l-P~~~  230 (355)
                      ...++ ++.++++++.+. .......... .   .+.-+|.+|......      ....|..||+.+++.+.+.. + ..
T Consensus        17 ~i~v~~~d~~tg~~~~~~-~~~~~~~p~~-~---a~spdg~l~~~~~~~------~~~~v~~~~~~~g~~~~~~~~~-~~   84 (347)
T 3hfq_A           17 GIYQGTLDTTAKTLTNDG-LLAATQNPTY-L---ALSAKDCLYSVDKED------DEGGIAAWQIDGQTAHKLNTVV-AP   84 (347)
T ss_dssp             EEEEEEEETTTTEEEEEE-EEEECSCCCC-E---EECTTCEEEEEEEET------TEEEEEEEEEETTEEEEEEEEE-EE
T ss_pred             CEEEEEEcCCCCeEEEee-eeeccCCcce-E---EEccCCeEEEEEecC------CCceEEEEEecCCcEEEeeeee-cC
Confidence            33444 777777776544 1111100000 0   223378888877631      12479999998888766632 2 11


Q ss_pred             CCCCCceEEEEE-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc---------eeEeEEEeeCCcEEE
Q 018497          231 STDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR---------IWWPLGFTERGKIFI  300 (355)
Q Consensus       231 ~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~---------~~~~~~~~~~g~i~~  300 (355)
                      ..  ....++.. +|+..++.....   ..+.+|.++..   ........+.....         ....+++..+|++++
T Consensus        85 ~~--~p~~~a~spdg~~l~~~~~~~---~~v~v~~~~~~---g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v  156 (347)
T 3hfq_A           85 GT--PPAYVAVDEARQLVYSANYHK---GTAEVMKIAAD---GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV  156 (347)
T ss_dssp             SC--CCSEEEEETTTTEEEEEETTT---TEEEEEEECTT---SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred             CC--CCEEEEECCCCCEEEEEeCCC---CEEEEEEeCCC---CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence            11  12234433 466444444333   58999999752   23444444433210         133466777888666


Q ss_pred             EEEeeCCceEEEEEeCC-CCeEEEE
Q 018497          301 RGECRHGGYGLLVYNPH-SDTFKCI  324 (355)
Q Consensus       301 ~~~~~~~~~~l~~yd~~-t~~~~~v  324 (355)
                      .  ...++ .+.+||++ ++++..+
T Consensus       157 ~--~~~~~-~v~~~~~~~~g~~~~~  178 (347)
T 3hfq_A          157 I--DLGSD-KVYVYNVSDAGQLSEQ  178 (347)
T ss_dssp             E--ETTTT-EEEEEEECTTSCEEEE
T ss_pred             E--eCCCC-EEEEEEECCCCcEEEe
Confidence            5  42344 58999988 6666544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=94.75  E-value=2.2  Score=38.26  Aligned_cols=175  Identities=11%  Similarity=0.028  Sum_probs=89.5

Q ss_pred             CCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCC---------cEEEEEEcCCCceeEeccCCCceeeeccccc
Q 018497          113 DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLD---------DFKVVYSLRSNSWKNIAYGFPRSIEINRSHI  183 (355)
Q Consensus       113 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~---------~ykvvyss~t~~W~~~~~~~p~~~~~~~~~~  183 (355)
                      .++.+.|||..+++...+-..........+.+.+.   +.         ..++ |+.+++.-...- .....    .-. 
T Consensus       111 ~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~---~~~l~~~~~dg~i~i-wd~~~~~~~~~~-~~~~~----~v~-  180 (401)
T 4aez_A          111 LERNVYVWNADSGSVSALAETDESTYVASVKWSHD---GSFLSVGLGNGLVDI-YDVESQTKLRTM-AGHQA----RVG-  180 (401)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT---SSEEEEEETTSCEEE-EETTTCCEEEEE-CCCSS----CEE-
T ss_pred             CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC---CCEEEEECCCCeEEE-EECcCCeEEEEe-cCCCC----ceE-
Confidence            47789999999998876554432222244555553   21         1121 666655432111 00000    001 


Q ss_pred             cceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CCeEEEEEecCCCCccEEEE
Q 018497          184 NSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYEL  262 (355)
Q Consensus       184 ~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~i  262 (355)
                        .+..+|.+...+..+        ..|..+|+.+..-....+. ....  ....+.-. +|.+.+++..+    ..+.+
T Consensus       181 --~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~-~~~~--~v~~~~~~~~~~~l~s~~~d----~~v~i  243 (401)
T 4aez_A          181 --CLSWNRHVLSSGSRS--------GAIHHHDVRIANHQIGTLQ-GHSS--EVCGLAWRSDGLQLASGGND----NVVQI  243 (401)
T ss_dssp             --EEEEETTEEEEEETT--------SEEEEEETTSSSCEEEEEE-CCSS--CEEEEEECTTSSEEEEEETT----SCEEE
T ss_pred             --EEEECCCEEEEEcCC--------CCEEEEecccCcceeeEEc-CCCC--CeeEEEEcCCCCEEEEEeCC----CeEEE
Confidence              444566655554443        6899999984332222221 1111  11223222 46666666655    48999


Q ss_pred             EEeccCCCCCCeEEEEEecCCCceeEeEEEeeCC-cEEEEEEee--CCceEEEEEeCCCCeEEE
Q 018497          263 WVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECR--HGGYGLLVYNPHSDTFKC  323 (355)
Q Consensus       263 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~--~~~~~l~~yd~~t~~~~~  323 (355)
                      |-+...      .....+.........+.+..++ .+++.  ..  .++ .+..||+++++...
T Consensus       244 wd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~ll~~--~~gs~d~-~i~i~d~~~~~~~~  298 (401)
T 4aez_A          244 WDARSS------IPKFTKTNHNAAVKAVAWCPWQSNLLAT--GGGTMDK-QIHFWNAATGARVN  298 (401)
T ss_dssp             EETTCS------SEEEEECCCSSCCCEEEECTTSTTEEEE--ECCTTTC-EEEEEETTTCCEEE
T ss_pred             ccCCCC------CccEEecCCcceEEEEEECCCCCCEEEE--ecCCCCC-EEEEEECCCCCEEE
Confidence            988751      2223332221124446666655 56666  41  355 59999998877533

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=94.21  E-value=1.5  Score=37.59  Aligned_cols=110  Identities=11%  Similarity=0.080  Sum_probs=69.3

Q ss_pred             ceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCC
Q 018497          191 GSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYG  269 (355)
Q Consensus       191 G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~  269 (355)
                      |.||.-.+..      ....|.++|+.+++. ..+++| ...   ....++..+++|++....++    .  +++.+-  
T Consensus        32 g~Lyvstg~~------~~s~v~~iD~~tg~v~~~i~l~-~~~---fgeGi~~~g~~lyv~t~~~~----~--v~viD~--   93 (266)
T 2iwa_A           32 DTLFESTGLY------GRSSVRQVALQTGKVENIHKMD-DSY---FGEGLTLLNEKLYQVVWLKN----I--GFIYDR--   93 (266)
T ss_dssp             TEEEEEECST------TTCEEEEEETTTCCEEEEEECC-TTC---CEEEEEEETTEEEEEETTCS----E--EEEEET--
T ss_pred             CeEEEECCCC------CCCEEEEEECCCCCEEEEEecC-CCc---ceEEEEEeCCEEEEEEecCC----E--EEEEEC--
Confidence            6788765431      246899999998876 445776 432   22346666889999876543    4  455553  


Q ss_pred             CCCCeEEEEEecCC-CceeEeEEEeeCC-cEEEEEEeeCCceEEEEEeCCCCeE-EEEEEe
Q 018497          270 LTESWTKLYTIEKP-QRIWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSDTF-KCIGVH  327 (355)
Q Consensus       270 ~~~~W~~~~~i~~~-~~~~~~~~~~~~g-~i~~~~~~~~~~~~l~~yd~~t~~~-~~v~~~  327 (355)
                        ..-..+.+|+.. .   ...+++.+| .+|+.  . ... .+..+|++|.+. ..+.+.
T Consensus        94 --~t~~v~~~i~~g~~---~g~glt~Dg~~l~vs--~-gs~-~l~viD~~t~~v~~~I~Vg  145 (266)
T 2iwa_A           94 --RTLSNIKNFTHQMK---DGWGLATDGKILYGS--D-GTS-ILYEIDPHTFKLIKKHNVK  145 (266)
T ss_dssp             --TTTEEEEEEECCSS---SCCEEEECSSSEEEE--C-SSS-EEEEECTTTCCEEEEEECE
T ss_pred             --CCCcEEEEEECCCC---CeEEEEECCCEEEEE--C-CCC-eEEEEECCCCcEEEEEEEC
Confidence              234666777655 2   134556566 56655  4 344 699999999764 556554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=94.19  E-value=2.8  Score=37.11  Aligned_cols=187  Identities=9%  Similarity=-0.017  Sum_probs=93.4

Q ss_pred             EEeeeCc-eEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcE--------EEE-EEcCCCcee
Q 018497           97 VVGSCNG-VLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDF--------KVV-YSLRSNSWK  166 (355)
Q Consensus        97 ~~~s~~G-Ll~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~y--------kvv-yss~t~~W~  166 (355)
                      +.-+.+| .|++...  .++.+.+||+.+++....-....  ....+.++|.   ....        .|. |+..++.-.
T Consensus        37 ~~~s~dg~~l~~~~~--~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spd---g~~l~~~~~~~~~v~v~d~~~~~~~  109 (391)
T 1l0q_A           37 AVISPDGTKVYVANA--HSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPD---GKQVYVTNMASSTLSVIDTTSNTVA  109 (391)
T ss_dssp             EEECTTSSEEEEEEG--GGTEEEEEETTTTEEEEEEECSS--SEEEEEECTT---SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEECCCCCEEEEECC--CCCeEEEEECCCCeEEEEEECCC--CccceEECCC---CCEEEEEECCCCEEEEEECCCCeEE
Confidence            3344455 3444442  46789999999987765332222  1234445443   2111        111 777766443


Q ss_pred             EeccCCCceeeeccccccceeEeCce-EEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEE-C
Q 018497          167 NIAYGFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF-D  243 (355)
Q Consensus       167 ~~~~~~p~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~-~  243 (355)
                      ..- ......  . ..   ...-+|. +|......        ..|..+|+.+.+.... ... ..     ...+... +
T Consensus       110 ~~~-~~~~~~--~-~~---~~s~dg~~l~~~~~~~--------~~v~~~d~~~~~~~~~~~~~-~~-----~~~~~~~~d  168 (391)
T 1l0q_A          110 GTV-KTGKSP--L-GL---ALSPDGKKLYVTNNGD--------KTVSVINTVTKAVINTVSVG-RS-----PKGIAVTPD  168 (391)
T ss_dssp             EEE-ECSSSE--E-EE---EECTTSSEEEEEETTT--------TEEEEEETTTTEEEEEEECC-SS-----EEEEEECTT
T ss_pred             EEE-eCCCCc--c-eE---EECCCCCEEEEEeCCC--------CEEEEEECCCCcEEEEEecC-CC-----cceEEECCC
Confidence            222 111111  0 00   2223565 44444332        5899999988776443 322 11     1223222 3


Q ss_pred             CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEee--CCceEEEEEeCCCCeE
Q 018497          244 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR--HGGYGLLVYNPHSDTF  321 (355)
Q Consensus       244 G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~--~~~~~l~~yd~~t~~~  321 (355)
                      |+..++....+   ..+.+|-++.      ......+.... ....+++..+|+.++.+ ..  .++ .+..||+++++.
T Consensus       169 g~~l~~~~~~~---~~v~~~d~~~------~~~~~~~~~~~-~~~~~~~~~~g~~l~~~-~~~~~~~-~v~~~d~~~~~~  236 (391)
T 1l0q_A          169 GTKVYVANFDS---MSISVIDTVT------NSVIDTVKVEA-APSGIAVNPEGTKAYVT-NVDKYFN-TVSMIDTGTNKI  236 (391)
T ss_dssp             SSEEEEEETTT---TEEEEEETTT------TEEEEEEECSS-EEEEEEECTTSSEEEEE-EECSSCC-EEEEEETTTTEE
T ss_pred             CCEEEEEeCCC---CEEEEEECCC------CeEEEEEecCC-CccceEECCCCCEEEEE-ecCcCCC-cEEEEECCCCeE
Confidence            54443343333   5899998764      23334444332 23445666677555541 21  244 599999998875


Q ss_pred             EE
Q 018497          322 KC  323 (355)
Q Consensus       322 ~~  323 (355)
                      ..
T Consensus       237 ~~  238 (391)
T 1l0q_A          237 TA  238 (391)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=94.08  E-value=2.9  Score=36.88  Aligned_cols=100  Identities=11%  Similarity=-0.023  Sum_probs=54.6

Q ss_pred             cEEEEEEcCCceee-EecCCCCCCCCCCceEEEEE--CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 018497          209 WLIVSFDFAKEIFQ-TVMMPYDLSTDDADKYLNVF--DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR  285 (355)
Q Consensus       209 ~~Il~fD~~~~~~~-~i~lP~~~~~~~~~~~L~~~--~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~  285 (355)
                      ..|..+|+.+.+-. .+..+ ....  ....+.-.  ++++.+.+..+    ..+.||-++..      ..+.++.....
T Consensus       192 ~~v~iwd~~~~~~~~~~~~~-~~~~--~~~~~~~~p~~~~~l~sg~~d----g~v~~wd~~~~------~~~~~~~~h~~  258 (344)
T 4gqb_B          192 NRILLWDTRCPKPASQIGCS-APGY--LPTSLAWHPQQSEVFVFGDEN----GTVSLVDTKST------SCVLSSAVHSQ  258 (344)
T ss_dssp             SCEEEEETTSSSCEEECC-----CC--CEEEEEECSSCTTEEEEEETT----SEEEEEESCC--------CCEEEECCSS
T ss_pred             cccccccccccceeeeeecc-eeec--cceeeeecCCCCcceEEeccC----CcEEEEECCCC------cEEEEEcCCCC
Confidence            47888999876543 33322 1111  11223322  45666666655    49999987641      12233332221


Q ss_pred             eeEeEEEeeCC-cEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497          286 IWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       286 ~~~~~~~~~~g-~i~~~~~~~~~~~~l~~yd~~t~~~~~v  324 (355)
                      ....+++..+| .+++.  ...++ .+.+||.+++++..+
T Consensus       259 ~v~~v~fsp~g~~~las--gs~D~-~i~vwd~~~~~~~~~  295 (344)
T 4gqb_B          259 CVTGLVFSPHSVPFLAS--LSEDC-SLAVLDSSLSELFRS  295 (344)
T ss_dssp             CEEEEEECSSSSCCEEE--EETTS-CEEEECTTCCEEEEE
T ss_pred             CEEEEEEccCCCeEEEE--EeCCC-eEEEEECCCCcEEEE
Confidence            34556667676 45555  32667 499999999986544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=94.07  E-value=0.87  Score=38.91  Aligned_cols=111  Identities=11%  Similarity=-0.007  Sum_probs=69.4

Q ss_pred             EeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEec
Q 018497          188 FLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMK  266 (355)
Q Consensus       188 ~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~  266 (355)
                      +.++.||.-.+..        ..|..+|+++++. ..+ +| ...   +..-++..+++|+++...++    .  +|+.+
T Consensus        62 ~~~~~Ly~stG~~--------g~v~~iD~~Tgkv~~~~-l~-~~~---FgeGit~~g~~Ly~ltw~~~----~--v~V~D  122 (268)
T 3nok_A           62 FHQGHFFESTGHQ--------GTLRQLSLESAQPVWME-RL-GNI---FAEGLASDGERLYQLTWTEG----L--LFTWS  122 (268)
T ss_dssp             EETTEEEEEETTT--------TEEEECCSSCSSCSEEE-EC-TTC---CEEEEEECSSCEEEEESSSC----E--EEEEE
T ss_pred             EECCEEEEEcCCC--------CEEEEEECCCCcEEeEE-CC-CCc---ceeEEEEeCCEEEEEEccCC----E--EEEEE
Confidence            4566777766554        4599999998876 445 66 432   23346777899999876543    3  45555


Q ss_pred             cCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE-EEEEEe
Q 018497          267 EYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF-KCIGVH  327 (355)
Q Consensus       267 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~-~~v~~~  327 (355)
                      -    ..-.++.+|+....   ..+++.+|+.++.  ..... .+..+|++|.+. +.|.+.
T Consensus       123 ~----~Tl~~~~ti~~~~e---GwGLt~Dg~~L~v--SdGs~-~l~~iDp~T~~v~~~I~V~  174 (268)
T 3nok_A          123 G----MPPQRERTTRYSGE---GWGLCYWNGKLVR--SDGGT-MLTFHEPDGFALVGAVQVK  174 (268)
T ss_dssp             T----TTTEEEEEEECSSC---CCCEEEETTEEEE--ECSSS-EEEEECTTTCCEEEEEECE
T ss_pred             C----CcCcEEEEEeCCCc---eeEEecCCCEEEE--ECCCC-EEEEEcCCCCeEEEEEEeC
Confidence            3    23466677776531   2445555655554  31334 699999999765 556553

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=94.00  E-value=1.1  Score=39.76  Aligned_cols=179  Identities=14%  Similarity=0.086  Sum_probs=81.0

Q ss_pred             CCceEEEEcCCcccEEecCCCCCCCc-eeEEEEecCCCCCC---------cEEEEEEcCCCc-eeEeccCCCceeeeccc
Q 018497          113 DRSLIYLWNPLIKKYMTLPRPSLNPR-YLGFGVNSVSGHLD---------DFKVVYSLRSNS-WKNIAYGFPRSIEINRS  181 (355)
Q Consensus       113 ~~~~~~V~NP~T~~~~~LP~~~~~~~-~~~~g~d~~~~~~~---------~ykvvyss~t~~-W~~~~~~~p~~~~~~~~  181 (355)
                      .++.+.|||..++++..+-....... ...+.+.+.   +.         ..++ |+..++. |+... .......... 
T Consensus        31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~s~d~~v~v-wd~~~~~~~~~~~-~~~~~~~~v~-  104 (377)
T 3dwl_C           31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK---SNRIVTCSQDRNAYV-YEKRPDGTWKQTL-VLLRLNRAAT-  104 (377)
T ss_dssp             SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT---TCCEEEEETTSSEEE-C------CCCCEE-ECCCCSSCEE-
T ss_pred             CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC---CCEEEEEeCCCeEEE-EEcCCCCceeeee-EecccCCceE-
Confidence            46678889988876555444433322 245555554   22         1221 6666554 44333 1111000000 


Q ss_pred             cccceeE--eCceEEEEEeeeccCCCCCCcEEEEEEcCCce----eeEecCCCCCCCCCCceEEEEE-CCeEEEEEecCC
Q 018497          182 HINSSVF--LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI----FQTVMMPYDLSTDDADKYLNVF-DGYLCVFATIPN  254 (355)
Q Consensus       182 ~~~~~v~--~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~----~~~i~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~  254 (355)
                          .+.  -+|.....+..+        ..|..+|+.+++    ...+.-|  ..  .....+.-. +|++.+....+ 
T Consensus       105 ----~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~--h~--~~v~~~~~~~~~~~l~~~~~d-  167 (377)
T 3dwl_C          105 ----FVRWSPNEDKFAVGSGA--------RVISVCYFEQENDWWVSKHLKRP--LR--STILSLDWHPNNVLLAAGCAD-  167 (377)
T ss_dssp             ----EEECCTTSSCCEEEESS--------SCEEECCC-----CCCCEEECSS--CC--SCEEEEEECTTSSEEEEEESS-
T ss_pred             ----EEEECCCCCEEEEEecC--------CeEEEEEECCcccceeeeEeecc--cC--CCeEEEEEcCCCCEEEEEeCC-
Confidence                121  145444433332        468888988765    2333322  11  112233333 46666666655 


Q ss_pred             CCccEEEEEEeccCC-----CCCCe-------EEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497          255 NTFRSYELWVMKEYG-----LTESW-------TKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF  321 (355)
Q Consensus       255 ~~~~~l~iW~l~~~~-----~~~~W-------~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~  321 (355)
                         ..+.+|.++...     ....|       .....+.... ....+.+..+|..++.  ...++ .+.+||+++++.
T Consensus       168 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~--~~~d~-~i~iwd~~~~~~  239 (377)
T 3dwl_C          168 ---RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGG-WVHAVGFSPSGNALAY--AGHDS-SVTIAYPSAPEQ  239 (377)
T ss_dssp             ---SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSS-SEEEEEECTTSSCEEE--EETTT-EEC-CEECSTTS
T ss_pred             ---CEEEEEEEEecccCCCccccccccccchhhhhhcccCCc-eEEEEEECCCCCEEEE--EeCCC-cEEEEECCCCCC
Confidence               489999986321     11122       2222331111 3455666777876665  32666 499999988764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=93.98  E-value=2.9  Score=36.52  Aligned_cols=194  Identities=10%  Similarity=0.035  Sum_probs=90.7

Q ss_pred             eCceEEEeecCCCCceEEEEcCCcccE---EecCCCCCCCceeEEEEecCC------CCCCcEEEEEEcCCCceeEeccC
Q 018497          101 CNGVLCFCSNGSDRSLIYLWNPLIKKY---MTLPRPSLNPRYLGFGVNSVS------GHLDDFKVVYSLRSNSWKNIAYG  171 (355)
Q Consensus       101 ~~GLl~l~~~~~~~~~~~V~NP~T~~~---~~LP~~~~~~~~~~~g~d~~~------~~~~~ykvvyss~t~~W~~~~~~  171 (355)
                      .+|-+++...  .++.+.|||..++++   ..+.....  ....+.+.+..      +..+..++ |+.+++.+......
T Consensus        18 ~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~~~   92 (372)
T 1k8k_C           18 KDRTQIAICP--NNHEVHIYEKSGNKWVQVHELKEHNG--QVTGVDWAPDSNRIVTCGTDRNAYV-WTLKGRTWKPTLVI   92 (372)
T ss_dssp             TTSSEEEEEC--SSSEEEEEEEETTEEEEEEEEECCSS--CEEEEEEETTTTEEEEEETTSCEEE-EEEETTEEEEEEEC
T ss_pred             CCCCEEEEEe--CCCEEEEEeCCCCcEEeeeeecCCCC--cccEEEEeCCCCEEEEEcCCCeEEE-EECCCCeeeeeEEe
Confidence            3444443332  467888999888853   33332111  12445555430      00111221 77777776544311


Q ss_pred             CCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCce-e---eEecCCCCCCCCCCceEEEEE-CCeE
Q 018497          172 FPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI-F---QTVMMPYDLSTDDADKYLNVF-DGYL  246 (355)
Q Consensus       172 ~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~-~---~~i~lP~~~~~~~~~~~L~~~-~G~L  246 (355)
                      ..........    ...-+|.....+...        ..|..+|+.+.. +   ..+..+ . .  .....+.-. +|++
T Consensus        93 ~~~~~~v~~~----~~~~~~~~l~~~~~d--------~~v~i~d~~~~~~~~~~~~~~~~-~-~--~~i~~~~~~~~~~~  156 (372)
T 1k8k_C           93 LRINRAARCV----RWAPNEKKFAVGSGS--------RVISICYFEQENDWWVCKHIKKP-I-R--STVLSLDWHPNSVL  156 (372)
T ss_dssp             CCCSSCEEEE----EECTTSSEEEEEETT--------SSEEEEEEETTTTEEEEEEECTT-C-C--SCEEEEEECTTSSE
T ss_pred             ecCCCceeEE----EECCCCCEEEEEeCC--------CEEEEEEecCCCcceeeeeeecc-c-C--CCeeEEEEcCCCCE
Confidence            1111000000    112245544444432        357777776554 2   222222 1 1  112233333 4666


Q ss_pred             EEEEecCCCCccEEEEEEeccCC-----CCC-------CeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEE
Q 018497          247 CVFATIPNNTFRSYELWVMKEYG-----LTE-------SWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVY  314 (355)
Q Consensus       247 ~~v~~~~~~~~~~l~iW~l~~~~-----~~~-------~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~y  314 (355)
                      .++...+    ..+.+|.+....     ...       .-..+..+.........+.+..+|..++.  ...++ .+..|
T Consensus       157 l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~-~i~i~  229 (372)
T 1k8k_C          157 LAAGSCD----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW--VSHDS-TVCLA  229 (372)
T ss_dssp             EEEEETT----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE--EETTT-EEEEE
T ss_pred             EEEEcCC----CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE--EeCCC-EEEEE
Confidence            6666555    489999975211     001       12333444322213445666677766666  43666 49999


Q ss_pred             eCCCCeEE
Q 018497          315 NPHSDTFK  322 (355)
Q Consensus       315 d~~t~~~~  322 (355)
                      |+++++..
T Consensus       230 d~~~~~~~  237 (372)
T 1k8k_C          230 DADKKMAV  237 (372)
T ss_dssp             EGGGTTEE
T ss_pred             ECCCCcee
Confidence            99877643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=93.90  E-value=0.83  Score=41.76  Aligned_cols=179  Identities=12%  Similarity=0.060  Sum_probs=86.0

Q ss_pred             CCceEEEEcCCcccEEecCCCCCC-CceeEEEEecCCCCCCcEEEE---------EEcCCCceeEeccCCCceeeecccc
Q 018497          113 DRSLIYLWNPLIKKYMTLPRPSLN-PRYLGFGVNSVSGHLDDFKVV---------YSLRSNSWKNIAYGFPRSIEINRSH  182 (355)
Q Consensus       113 ~~~~~~V~NP~T~~~~~LP~~~~~-~~~~~~g~d~~~~~~~~ykvv---------yss~t~~W~~~~~~~p~~~~~~~~~  182 (355)
                      .++.+.|||..+++...+-..... .....+.|.|.   .+.+-+.         +|.+++.-+... ............
T Consensus       140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~---~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~  215 (435)
T 4e54_B          140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL---NTNQFYASSMEGTTRLQDFKGNILRVFA-SSDTINIWFCSL  215 (435)
T ss_dssp             TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS---CTTEEEEECSSSCEEEEETTSCEEEEEE-CCSSCSCCCCCE
T ss_pred             CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC---CCCEEEEEeCCCEEEEeeccCCceeEEe-ccCCCCccEEEE
Confidence            578899999998765443222221 12256666664   3222111         666665544433 111100000000


Q ss_pred             ccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CCe-EEEEEecCCCCccEE
Q 018497          183 INSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGY-LCVFATIPNNTFRSY  260 (355)
Q Consensus       183 ~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G~-L~~v~~~~~~~~~~l  260 (355)
                         ...-+|.+...+...        ..|..+|+.++....+...   .  .....+.-. +|. +.+.+..+    ..+
T Consensus       216 ---~~~~~~~~l~~g~~d--------g~i~~wd~~~~~~~~~~~h---~--~~v~~v~~~p~~~~~~~s~s~d----~~v  275 (435)
T 4e54_B          216 ---DVSASSRMVVTGDNV--------GNVILLNMDGKELWNLRMH---K--KKVTHVALNPCCDWFLATASVD----QTV  275 (435)
T ss_dssp             ---EEETTTTEEEEECSS--------SBEEEEESSSCBCCCSBCC---S--SCEEEEEECTTCSSEEEEEETT----SBC
T ss_pred             ---EECCCCCEEEEEeCC--------CcEeeeccCcceeEEEecc---c--ceEEeeeecCCCceEEEEecCc----cee
Confidence               222356555554443        5788899876543332211   1  111222222 344 54445544    489


Q ss_pred             EEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497          261 ELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF  321 (355)
Q Consensus       261 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~  321 (355)
                      .||-+...........  ...... ....+++..+|..++.  ...++ .+.+||.++...
T Consensus       276 ~iwd~~~~~~~~~~~~--~~~h~~-~v~~~~~spdg~~l~s--~~~D~-~i~iwd~~~~~~  330 (435)
T 4e54_B          276 KIWDLRQVRGKASFLY--SLPHRH-PVNAACFSPDGARLLT--TDQKS-EIRVYSASQWDC  330 (435)
T ss_dssp             CEEETTTCCSSSCCSB--CCBCSS-CEEECCBCTTSSEEEE--EESSS-CEEEEESSSSSS
T ss_pred             eEEecccccccceEEE--eeeccc-cccceeECCCCCeeEE--EcCCC-EEEEEECCCCcc
Confidence            9998875321111100  001111 2333455567766666  43666 499999987654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=93.83  E-value=3.6  Score=37.11  Aligned_cols=191  Identities=14%  Similarity=0.105  Sum_probs=94.1

Q ss_pred             eeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCce-eEEEEecCCCCCCcEEEE---------EEcCCCceeEec
Q 018497          100 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRY-LGFGVNSVSGHLDDFKVV---------YSLRSNSWKNIA  169 (355)
Q Consensus       100 s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~-~~~g~d~~~~~~~~ykvv---------yss~t~~W~~~~  169 (355)
                      |.+++|-..-    ++.++|||..|++...+-........ ..+.+.+.   + .+-++         |+.++++-...-
T Consensus       114 S~~n~lAvgl----d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd---g-~~lasgs~Dg~v~iWd~~~~~~~~~~  185 (420)
T 4gga_A          114 SSGNVLAVAL----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE---G-NYLAVGTSSAEVQLWDVQQQKRLRNM  185 (420)
T ss_dssp             CTTSEEEEEE----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT---S-SEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEe----CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC---C-CEEEEEECCCeEEEEEcCCCcEEEEE
Confidence            3456554433    67899999999988765444333222 45666653   2 22222         666655321111


Q ss_pred             cCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEE-ECCeEEE
Q 018497          170 YGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNV-FDGYLCV  248 (355)
Q Consensus       170 ~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~-~~G~L~~  248 (355)
                       ....    ....   .+..+|.+...+...        ..+..+|..........+. ....  ....+.. .+|+..+
T Consensus       186 -~~h~----~~v~---~~s~~~~~l~sgs~d--------~~i~~~d~~~~~~~~~~~~-~h~~--~~~~~~~~~~g~~l~  246 (420)
T 4gga_A          186 -TSHS----ARVG---SLSWNSYILSSGSRS--------GHIHHHDVRVAEHHVATLS-GHSQ--EVCGLRWAPDGRHLA  246 (420)
T ss_dssp             -CCCS----SCEE---EEEEETTEEEEEETT--------SEEEEEETTSSSCEEEEEE-CCSS--CEEEEEECTTSSEEE
T ss_pred             -eCCC----CceE---EEeeCCCEEEEEeCC--------CceeEeeecccceeeEEec-cccc--ceeeeeecCCCCeee
Confidence             0000    0011   455566554444433        5788888776544333222 2211  1122222 2366666


Q ss_pred             EEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCC-cEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497          249 FATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       249 v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~~l~~yd~~t~~~~~v  324 (355)
                      ....+    ..+.||......  ..+...............+++...+ .++..+....++ .+.+||..+++....
T Consensus       247 s~~~D----~~v~i~~~~~~~--~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~-~I~iwd~~t~~~~~~  316 (420)
T 4gga_A          247 SGGND----NLVNVWPSAPGE--GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR-HIRIWNVCSGACLSA  316 (420)
T ss_dssp             EEETT----SCEEEEESSCCS--SCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC-EEEEEETTTTEEEEE
T ss_pred             eeecc----ccceEEeecccc--ccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC-EEEEEeCCcccccee
Confidence            56555    488999887532  2222222222111123344444433 555542121345 588999998876544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=93.80  E-value=3.4  Score=36.60  Aligned_cols=180  Identities=10%  Similarity=-0.001  Sum_probs=91.0

Q ss_pred             eEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcE--------EEE-EEcCCCceeEeccCCCc
Q 018497          104 VLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDF--------KVV-YSLRSNSWKNIAYGFPR  174 (355)
Q Consensus       104 Ll~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~y--------kvv-yss~t~~W~~~~~~~p~  174 (355)
                      .+++...  .++.+.+||..+++....-.....  ...+.+.+.   +...        .|. ++.++++-...- ..+.
T Consensus         3 ~l~vs~~--~d~~v~v~d~~~~~~~~~~~~~~~--~~~~~~s~d---g~~l~~~~~~d~~i~v~d~~~~~~~~~~-~~~~   74 (391)
T 1l0q_A            3 FAYIANS--ESDNISVIDVTSNKVTATIPVGSN--PMGAVISPD---GTKVYVANAHSNDVSIIDTATNNVIATV-PAGS   74 (391)
T ss_dssp             EEEEEET--TTTEEEEEETTTTEEEEEEECSSS--EEEEEECTT---SSEEEEEEGGGTEEEEEETTTTEEEEEE-ECSS
T ss_pred             EEEEEcC--CCCEEEEEECCCCeEEEEeecCCC--cceEEECCC---CCEEEEECCCCCeEEEEECCCCeEEEEE-ECCC
Confidence            4445543  577899999998877643222211  234445443   2211        111 777766543222 1111


Q ss_pred             eeeeccccccceeEeCce-EEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEE-CCeEEEEEe
Q 018497          175 SIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF-DGYLCVFAT  251 (355)
Q Consensus       175 ~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~-~G~L~~v~~  251 (355)
                      .....      ...-+|. +|.....        ...|..+|+.+++.... ... .     ....+... +|+..++..
T Consensus        75 ~v~~~------~~spdg~~l~~~~~~--------~~~v~v~d~~~~~~~~~~~~~-~-----~~~~~~~s~dg~~l~~~~  134 (391)
T 1l0q_A           75 SPQGV------AVSPDGKQVYVTNMA--------SSTLSVIDTTSNTVAGTVKTG-K-----SPLGLALSPDGKKLYVTN  134 (391)
T ss_dssp             SEEEE------EECTTSSEEEEEETT--------TTEEEEEETTTTEEEEEEECS-S-----SEEEEEECTTSSEEEEEE
T ss_pred             Cccce------EECCCCCEEEEEECC--------CCEEEEEECCCCeEEEEEeCC-C-----CcceEEECCCCCEEEEEe
Confidence            11000      1222455 4444333        25899999998776443 332 1     11233333 355443333


Q ss_pred             cCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCc-EEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497          252 IPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFIRGECRHGGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       252 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~~l~~yd~~t~~~~~v  324 (355)
                      ...   ..+.+|.++.    .  .....+.... ....+.+..+|+ +++.  ...++ .+..||+++++....
T Consensus       135 ~~~---~~v~~~d~~~----~--~~~~~~~~~~-~~~~~~~~~dg~~l~~~--~~~~~-~v~~~d~~~~~~~~~  195 (391)
T 1l0q_A          135 NGD---KTVSVINTVT----K--AVINTVSVGR-SPKGIAVTPDGTKVYVA--NFDSM-SISVIDTVTNSVIDT  195 (391)
T ss_dssp             TTT---TEEEEEETTT----T--EEEEEEECCS-SEEEEEECTTSSEEEEE--ETTTT-EEEEEETTTTEEEEE
T ss_pred             CCC---CEEEEEECCC----C--cEEEEEecCC-CcceEEECCCCCEEEEE--eCCCC-EEEEEECCCCeEEEE
Confidence            333   5899997764    2  2223333222 234466667775 4455  42455 599999999876543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=93.58  E-value=3.7  Score=36.38  Aligned_cols=186  Identities=11%  Similarity=0.064  Sum_probs=92.4

Q ss_pred             EEeeeCceEEEeecCCCCceEEEEcCCcccEEe---cCCCCCC-Cce----eEEEEecCCCCCCcEEEE-EEcCCC--ce
Q 018497           97 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMT---LPRPSLN-PRY----LGFGVNSVSGHLDDFKVV-YSLRSN--SW  165 (355)
Q Consensus        97 ~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~---LP~~~~~-~~~----~~~g~d~~~~~~~~ykvv-yss~t~--~W  165 (355)
                      .....+|.|.+..   ....++.+|+.|++.+.   ++..... +..    +.++.      . +-.|. ||.+++  .|
T Consensus        98 ~~~~~~~~v~v~~---~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~------~-~g~l~~~d~~tG~~~W  167 (376)
T 3q7m_A           98 GVTVSGGHVYIGS---EKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHT------S-NGQLQALNEADGAVKW  167 (376)
T ss_dssp             EEEEETTEEEEEE---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEEC------T-TSEEEEEETTTCCEEE
T ss_pred             CceEeCCEEEEEc---CCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEc------C-CCeEEEEECCCCcEEE
Confidence            3455688887776   46789999999987542   2221111 100    11111      1 11333 888776  58


Q ss_pred             eEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCce--eeEe-cCCCCCCCC-----CCce
Q 018497          166 KNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQTV-MMPYDLSTD-----DADK  237 (355)
Q Consensus       166 ~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~--~~~i-~lP~~~~~~-----~~~~  237 (355)
                      +.-. ..+.........   ++..+|.+|.-...         ..+.++|..+.+  |+.- ..| ....+     ....
T Consensus       168 ~~~~-~~~~~~~~~~~~---~~~~~~~v~~g~~~---------g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~  233 (376)
T 3q7m_A          168 TVNL-DMPSLSLRGESA---PTTAFGAAVVGGDN---------GRVSAVLMEQGQMIWQQRISQA-TGSTEIDRLSDVDT  233 (376)
T ss_dssp             EEEC-CC-----CCCCC---CEEETTEEEECCTT---------TEEEEEETTTCCEEEEEECCC------------CCCC
T ss_pred             EEeC-CCCceeecCCCC---cEEECCEEEEEcCC---------CEEEEEECCCCcEEEEEecccC-CCCcccccccccCC
Confidence            7654 222111111122   66778888775433         489999987654  4332 222 11100     0111


Q ss_pred             EEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCC
Q 018497          238 YLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPH  317 (355)
Q Consensus       238 ~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~  317 (355)
                      ..+..+|.+++....     ..+..+..+.  .+..|...    ...  ..... ..++.||+.  . .++ .++.+|++
T Consensus       234 ~p~~~~~~v~~~~~~-----g~l~~~d~~t--G~~~w~~~----~~~--~~~~~-~~~~~l~~~--~-~~g-~l~~~d~~  295 (376)
T 3q7m_A          234 TPVVVNGVVFALAYN-----GNLTALDLRS--GQIMWKRE----LGS--VNDFI-VDGNRIYLV--D-QND-RVMALTID  295 (376)
T ss_dssp             CCEEETTEEEEECTT-----SCEEEEETTT--CCEEEEEC----CCC--EEEEE-EETTEEEEE--E-TTC-CEEEEETT
T ss_pred             CcEEECCEEEEEecC-----cEEEEEECCC--CcEEeecc----CCC--CCCce-EECCEEEEE--c-CCC-eEEEEECC
Confidence            223446777665432     2333333322  23446542    111  11122 235677777  5 566 49999999


Q ss_pred             CCeEEEE
Q 018497          318 SDTFKCI  324 (355)
Q Consensus       318 t~~~~~v  324 (355)
                      +++...-
T Consensus       296 tG~~~w~  302 (376)
T 3q7m_A          296 GGVTLWT  302 (376)
T ss_dssp             TCCEEEE
T ss_pred             CCcEEEe
Confidence            9886543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=93.44  E-value=3.4  Score=35.55  Aligned_cols=185  Identities=10%  Similarity=0.088  Sum_probs=92.9

Q ss_pred             CceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcE--------EEE-EEcCCCce--eEecc
Q 018497          102 NGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDF--------KVV-YSLRSNSW--KNIAY  170 (355)
Q Consensus       102 ~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~y--------kvv-yss~t~~W--~~~~~  170 (355)
                      .+.+++...  ....+.++|+.|++....-..... . .++.+++.   ++..        +|. |+..++.-  +.+..
T Consensus         9 ~~~~~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~-~-~~~~~s~d---g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            9 SNFGIVVEQ--HLRRISFFSTDTLEILNQITLGYD-F-VDTAITSD---CSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             CCEEEEEEG--GGTEEEEEETTTCCEEEEEECCCC-E-EEEEECSS---SCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             CCEEEEEec--CCCeEEEEeCcccceeeeEEccCC-c-ceEEEcCC---CCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            455555543  567899999999888643222211 1 25566654   3211        221 66666543  11110


Q ss_pred             -CCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeE-ecCCCCCCCCCCceEEEEE-CCe-E
Q 018497          171 -GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVF-DGY-L  246 (355)
Q Consensus       171 -~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~-i~lP~~~~~~~~~~~L~~~-~G~-L  246 (355)
                       ..|..     .-   .+.-+|...+.....     .....|..+|+.+.+... ++.. ..     ...++.. +|+ |
T Consensus        82 ~~~~~~-----~~---~~s~dg~~l~~~~~~-----~~~~~i~v~d~~~~~~~~~~~~~-~~-----~~~~~~spdg~~l  142 (331)
T 3u4y_A           82 GQSSMA-----DV---DITPDDQFAVTVTGL-----NHPFNMQSYSFLKNKFISTIPIP-YD-----AVGIAISPNGNGL  142 (331)
T ss_dssp             CSSCCC-----CE---EECTTSSEEEECCCS-----SSSCEEEEEETTTTEEEEEEECC-TT-----EEEEEECTTSSCE
T ss_pred             CCCCcc-----ce---EECCCCCEEEEecCC-----CCcccEEEEECCCCCeEEEEECC-CC-----ccceEECCCCCEE
Confidence             01110     00   223355533332221     112289999998876633 3333 11     1233333 364 6


Q ss_pred             EEEEecCCCCccEEEEEEeccCCCCCCeEE-EEEecCCCceeEeEEEeeCCc-EEEEEEeeCCceEEEEEeCCCCeE
Q 018497          247 CVFATIPNNTFRSYELWVMKEYGLTESWTK-LYTIEKPQRIWWPLGFTERGK-IFIRGECRHGGYGLLVYNPHSDTF  321 (355)
Q Consensus       247 ~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~~l~~yd~~t~~~  321 (355)
                      ++.....+   ..+.+|.++..+  ..... ...+.... ....+.+..+|+ +++.  ...++ .+.+||+++++.
T Consensus       143 ~~~~~~~~---~~i~~~~~~~~g--~~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~--~~~~~-~v~v~d~~~~~~  210 (331)
T 3u4y_A          143 ILIDRSSA---NTVRRFKIDADG--VLFDTGQEFISGGT-RPFNITFTPDGNFAFVA--NLIGN-SIGILETQNPEN  210 (331)
T ss_dssp             EEEEETTT---TEEEEEEECTTC--CEEEEEEEEECSSS-SEEEEEECTTSSEEEEE--ETTTT-EEEEEECSSTTS
T ss_pred             EEEecCCC---ceEEEEEECCCC--cEeecCCccccCCC-CccceEECCCCCEEEEE--eCCCC-eEEEEECCCCcc
Confidence            66665543   239999998532  11111 12222222 234466677886 6666  42345 599999998774

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=93.34  E-value=3.9  Score=35.86  Aligned_cols=183  Identities=12%  Similarity=0.175  Sum_probs=89.5

Q ss_pred             eeCceEEEeecCCCCceEEEEcCCcccEEecCCC-CCC-CceeEEEEecCCCCCC---------cEEEEEEcCCCceeEe
Q 018497          100 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRP-SLN-PRYLGFGVNSVSGHLD---------DFKVVYSLRSNSWKNI  168 (355)
Q Consensus       100 s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~-~~~-~~~~~~g~d~~~~~~~---------~ykvvyss~t~~W~~~  168 (355)
                      +-+|-++....  .++.+.|||..++++...... ... .....+.+.|.   +.         .-++ ++..++.++.+
T Consensus        25 sp~g~~las~~--~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---g~~l~s~s~D~~v~i-w~~~~~~~~~~   98 (345)
T 3fm0_A           25 NPAGTLLASCG--GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC---GNYLASASFDATTCI-WKKNQDDFECV   98 (345)
T ss_dssp             CTTSSCEEEEE--TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT---SSEEEEEETTSCEEE-EEECCC-EEEE
T ss_pred             CCCCCEEEEEc--CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC---CCEEEEEECCCcEEE-EEccCCCeEEE
Confidence            33555444443  567888998887765422111 111 11245555553   21         1111 56555555433


Q ss_pred             ccCCCceeeeccccccceeE--eCceEEEEEeeeccCCCCCCcEEEEEEcCCce-eeEe-cCCCCCCCCCCceEEEEE-C
Q 018497          169 AYGFPRSIEINRSHINSSVF--LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI-FQTV-MMPYDLSTDDADKYLNVF-D  243 (355)
Q Consensus       169 ~~~~p~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~-~~~i-~lP~~~~~~~~~~~L~~~-~  243 (355)
                      . .+........     ++.  -+|.+...+..+        ..|..+|+.++. ...+ .+. ....  ....+.-. +
T Consensus        99 ~-~~~~h~~~v~-----~v~~sp~~~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~-~h~~--~v~~~~~~p~  161 (345)
T 3fm0_A           99 T-TLEGHENEVK-----SVAWAPSGNLLATCSRD--------KSVWVWEVDEEDEYECVSVLN-SHTQ--DVKHVVWHPS  161 (345)
T ss_dssp             E-EECCCSSCEE-----EEEECTTSSEEEEEETT--------SCEEEEEECTTSCEEEEEEEC-CCCS--CEEEEEECSS
T ss_pred             E-EccCCCCCce-----EEEEeCCCCEEEEEECC--------CeEEEEECCCCCCeEEEEEec-CcCC--CeEEEEECCC
Confidence            3 1111000000     222  245544444333        478888987643 2322 122 1111  11122222 3


Q ss_pred             CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeC
Q 018497          244 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNP  316 (355)
Q Consensus       244 G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~  316 (355)
                      |++.+....+    ..+.+|.++.    ..|....++.........+.+..+|..++.  ...++ .+.+||.
T Consensus       162 ~~~l~s~s~d----~~i~~w~~~~----~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s--~s~D~-~v~iW~~  223 (345)
T 3fm0_A          162 QELLASASYD----DTVKLYREEE----DDWVCCATLEGHESTVWSLAFDPSGQRLAS--CSDDR-TVRIWRQ  223 (345)
T ss_dssp             SSCEEEEETT----SCEEEEEEET----TEEEEEEEECCCSSCEEEEEECTTSSEEEE--EETTS-CEEEEEE
T ss_pred             CCEEEEEeCC----CcEEEEEecC----CCEEEEEEecCCCCceEEEEECCCCCEEEE--EeCCC-eEEEecc
Confidence            6666656555    4899998875    457766666543323555667777877666  43566 4777774

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=93.25  E-value=3.6  Score=35.33  Aligned_cols=59  Identities=5%  Similarity=0.009  Sum_probs=32.9

Q ss_pred             cEEEEEEeccCCCCCCeEEEE--EecCCCc-eeEeEEEeeCCc-EEEEEEeeCCceEEEEEeCC--CCeEE
Q 018497          258 RSYELWVMKEYGLTESWTKLY--TIEKPQR-IWWPLGFTERGK-IFIRGECRHGGYGLLVYNPH--SDTFK  322 (355)
Q Consensus       258 ~~l~iW~l~~~~~~~~W~~~~--~i~~~~~-~~~~~~~~~~g~-i~~~~~~~~~~~~l~~yd~~--t~~~~  322 (355)
                      ..+.+|.++..   .......  .+..... ....+.+..+|+ +++.  ...++ .+..||++  +++++
T Consensus       151 ~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~--~~~~~-~i~~~~~~~~~g~~~  215 (343)
T 1ri6_A          151 DRICLFTVSDD---GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV--NELNS-SVDVWELKDPHGNIE  215 (343)
T ss_dssp             TEEEEEEECTT---SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE--ETTTT-EEEEEESSCTTSCCE
T ss_pred             CEEEEEEecCC---CceeeecccccccCCCCCcceEEECCCCCEEEEE--eCCCC-EEEEEEecCCCCcEE
Confidence            48999998752   3344433  3332211 233466677786 5555  32345 58999984  45543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=93.20  E-value=3.4  Score=34.82  Aligned_cols=190  Identities=12%  Similarity=0.125  Sum_probs=99.8

Q ss_pred             EEEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcE-------EEE-EEcCCCceeE
Q 018497           96 DVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDF-------KVV-YSLRSNSWKN  167 (355)
Q Consensus        96 ~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~y-------kvv-yss~t~~W~~  167 (355)
                      .+....+|-+.+...  ....+.++||. ++...++.+.......++..|+.   ..-|       +|. |+.. +..+.
T Consensus        24 ~i~~d~~g~l~v~~~--~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~v~~~d~~-g~~~~   96 (300)
T 2qc5_A           24 GITSSEDGKVWFTQH--KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL---GDIWFTENGANKIGKLSKK-GGFTE   96 (300)
T ss_dssp             EEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             eeeECCCCCEEEEcC--CCCeEEEECCC-CceEEEECCCCCCcceeEEECCC---CCEEEEecCCCeEEEECCC-CCeEE
Confidence            444455677766653  46789999998 77765543322222355666653   2211       222 6666 66654


Q ss_pred             eccCCCceeeeccccccceeEe--CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEE-ECC
Q 018497          168 IAYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNV-FDG  244 (355)
Q Consensus       168 ~~~~~p~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~-~~G  244 (355)
                      ..  .+....  ...   ++.+  +|.+|+.....        ..|..+|.. ++...+.+| ....  ....++. -+|
T Consensus        97 ~~--~~~~~~--~~~---~i~~~~~g~l~v~~~~~--------~~i~~~~~~-g~~~~~~~~-~~~~--~~~~i~~d~~g  157 (300)
T 2qc5_A           97 YP--LPQPDS--GPY---GITEGLNGDIWFTQLNG--------DRIGKLTAD-GTIYEYDLP-NKGS--YPAFITLGSDN  157 (300)
T ss_dssp             EE--CSSTTC--CEE---EEEECSTTCEEEEETTT--------TEEEEECTT-SCEEEEECS-STTC--CEEEEEECTTS
T ss_pred             ec--CCCCCC--CCc---cceECCCCCEEEEccCC--------CeEEEECCC-CCEEEccCC-CCCC--CceeEEECCCC
Confidence            44  111100  111   3333  68877765433        589999998 666666555 3221  2233444 348


Q ss_pred             eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497          245 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       245 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v  324 (355)
                      +|++......    .  |+.++..   ..... ..++.......-+.+..+|.+++.  ....+ .+..||+ ++++..+
T Consensus       158 ~l~v~~~~~~----~--i~~~~~~---g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~-~i~~~~~-~g~~~~~  223 (300)
T 2qc5_A          158 ALWFTENQNN----S--IGRITNT---GKLEE-YPLPTNAAAPVGITSGNDGALWFV--EIMGN-KIGRITT-TGEISEY  223 (300)
T ss_dssp             SEEEEETTTT----E--EEEECTT---CCEEE-EECSSTTCCEEEEEECTTSSEEEE--ETTTT-EEEEECT-TCCEEEE
T ss_pred             CEEEEecCCC----e--EEEECCC---CcEEE-eeCCCCCCCcceEEECCCCCEEEE--ccCCC-EEEEEcC-CCcEEEE
Confidence            8877665332    4  4444431   23332 222211112333555567788888  52334 5999999 5665554


Q ss_pred             E
Q 018497          325 G  325 (355)
Q Consensus       325 ~  325 (355)
                      .
T Consensus       224 ~  224 (300)
T 2qc5_A          224 D  224 (300)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=93.17  E-value=3.6  Score=35.06  Aligned_cols=186  Identities=10%  Similarity=0.055  Sum_probs=89.2

Q ss_pred             ceEEEeecCCCCceEEEEcCCcccEE-ecCCCCCCCceeEEEEecCCCCCC-----cEEEE-EEcCCC--ceeEeccCCC
Q 018497          103 GVLCFCSNGSDRSLIYLWNPLIKKYM-TLPRPSLNPRYLGFGVNSVSGHLD-----DFKVV-YSLRSN--SWKNIAYGFP  173 (355)
Q Consensus       103 GLl~l~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~g~d~~~~~~~-----~ykvv-yss~t~--~W~~~~~~~p  173 (355)
                      |-+++...  ....++++|+.|++.+ .++..... ......+.|.   .+     .-.|. ||. ++  .|+.-. ...
T Consensus         5 ~~~lv~~~--~~~~v~~~d~~tG~~~w~~~~~~~~-~~~~~~~~pd---G~ilvs~~~~V~~~d~-~G~~~W~~~~-~~~   76 (276)
T 3no2_A            5 QHLLVGGS--GWNKIAIINKDTKEIVWEYPLEKGW-ECNSVAATKA---GEILFSYSKGAKMITR-DGRELWNIAA-PAG   76 (276)
T ss_dssp             CEEEEECT--TCSEEEEEETTTTEEEEEEECCTTC-CCCEEEECTT---SCEEEECBSEEEEECT-TSCEEEEEEC-CTT
T ss_pred             CcEEEeeC--CCCEEEEEECCCCeEEEEeCCCccC-CCcCeEECCC---CCEEEeCCCCEEEECC-CCCEEEEEcC-CCC
Confidence            34444442  5788999999888765 34433210 0111222222   11     00122 666 33  566433 111


Q ss_pred             ceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCC---CceEEEEECCeEEEEE
Q 018497          174 RSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDD---ADKYLNVFDGYLCVFA  250 (355)
Q Consensus       174 ~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~---~~~~L~~~~G~L~~v~  250 (355)
                      ...  . ..   .+.-||.++......       ...|+++|.+.+....+.+. ......   ....-...+|.+.++.
T Consensus        77 ~~~--~-~~---~~~~dG~~lv~~~~~-------~~~v~~vd~~Gk~l~~~~~~-~~~~~~~~~~~~v~~~~~G~~lv~~  142 (276)
T 3no2_A           77 CEM--Q-TA---RILPDGNALVAWCGH-------PSTILEVNMKGEVLSKTEFE-TGIERPHAQFRQINKNKKGNYLVPL  142 (276)
T ss_dssp             CEE--E-EE---EECTTSCEEEEEEST-------TEEEEEECTTSCEEEEEEEC-CSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred             ccc--c-cc---EECCCCCEEEEecCC-------CCEEEEEeCCCCEEEEEecc-CCCCcccccccCceECCCCCEEEEe
Confidence            111  1 11   455688877765541       24789999876654444433 221100   0011122346665554


Q ss_pred             ecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE-EEEE
Q 018497          251 TIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF-KCIG  325 (355)
Q Consensus       251 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~-~~v~  325 (355)
                      ...    ..+..|-.+  + +..|+...  ....  . ......+|.+++.  ...++ +++.+|++|+++ .++.
T Consensus       143 ~~~----~~v~~~d~~--G-~~~w~~~~--~~~~--~-~~~~~~~g~~~v~--~~~~~-~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          143 FAT----SEVREIAPN--G-QLLNSVKL--SGTP--F-SSAFLDNGDCLVA--CGDAH-CFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             TTT----TEEEEECTT--S-CEEEEEEC--SSCC--C-EEEECTTSCEEEE--CBTTS-EEEEECTTTCCEEEEEE
T ss_pred             cCC----CEEEEECCC--C-CEEEEEEC--CCCc--c-ceeEcCCCCEEEE--eCCCC-eEEEEeCcCCcEEEEec
Confidence            433    355555443  2 34555432  2111  1 1333457788887  52444 599999997665 3443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=93.04  E-value=1.9  Score=38.32  Aligned_cols=111  Identities=13%  Similarity=0.187  Sum_probs=62.7

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCce--eeEecCCCCCC------CCCCceEEEEECCeEEEEEecCCCCc
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQTVMMPYDLS------TDDADKYLNVFDGYLCVFATIPNNTF  257 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~--~~~i~lP~~~~------~~~~~~~L~~~~G~L~~v~~~~~~~~  257 (355)
                      +++.+|.+|......         .|.+||..+.+  |+. +++ ...      ........+..+|+|++....     
T Consensus        49 p~v~~~~v~~~~~~g---------~v~a~d~~tG~~~W~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-----  112 (376)
T 3q7m_A           49 PALADNVVYAADRAG---------LVKALNADDGKEIWSV-SLA-EKDGWFSKEPALLSGGVTVSGGHVYIGSEK-----  112 (376)
T ss_dssp             CEEETTEEEEECTTS---------EEEEEETTTCCEEEEE-ECC-C---CCSCCCCCEEEEEEEETTEEEEEETT-----
T ss_pred             cEEECCEEEEEcCCC---------eEEEEEccCCceeeee-cCc-cccccccccCcccccCceEeCCEEEEEcCC-----
Confidence            788999999876554         89999987654  443 333 211      111234456677888775532     


Q ss_pred             cEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497          258 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC  323 (355)
Q Consensus       258 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~  323 (355)
                      ..+  ..++....+..|...  +.... ...|+  ..+|.|++.  . .++ .++.+|.+|++...
T Consensus       113 g~l--~a~d~~tG~~~W~~~--~~~~~-~~~p~--~~~~~v~v~--~-~~g-~l~~~d~~tG~~~W  167 (376)
T 3q7m_A          113 AQV--YALNTSDGTVAWQTK--VAGEA-LSRPV--VSDGLVLIH--T-SNG-QLQALNEADGAVKW  167 (376)
T ss_dssp             SEE--EEEETTTCCEEEEEE--CSSCC-CSCCE--EETTEEEEE--C-TTS-EEEEEETTTCCEEE
T ss_pred             CEE--EEEECCCCCEEEEEe--CCCce-EcCCE--EECCEEEEE--c-CCC-eEEEEECCCCcEEE
Confidence            244  344422123456542  22111 12222  235667776  5 566 49999999887544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=92.75  E-value=5.3  Score=35.86  Aligned_cols=190  Identities=14%  Similarity=0.054  Sum_probs=96.0

Q ss_pred             eeCceEEEeecCCCCceEEEEcCCcccEEe-cCCCCCCCceeEEEEecCCCCCCcE--------EEE-EEcCCCceeEec
Q 018497          100 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNPRYLGFGVNSVSGHLDDF--------KVV-YSLRSNSWKNIA  169 (355)
Q Consensus       100 s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~g~d~~~~~~~~y--------kvv-yss~t~~W~~~~  169 (355)
                      +.+|-+++...  .++.+.+||+.+++... ++....  ....+.+++.   ....        .|. |+.+++.....-
T Consensus       178 ~~~~~~~~s~~--~d~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~l~~~~~~~~~i~~~d~~~~~~~~~~  250 (433)
T 3bws_A          178 PEHNELWVSQM--QANAVHVFDLKTLAYKATVDLTGK--WSKILLYDPI---RDLVYCSNWISEDISVIDRKTKLEIRKT  250 (433)
T ss_dssp             GGGTEEEEEEG--GGTEEEEEETTTCCEEEEEECSSS--SEEEEEEETT---TTEEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             cCCCEEEEEEC--CCCEEEEEECCCceEEEEEcCCCC--CeeEEEEcCC---CCEEEEEecCCCcEEEEECCCCcEEEEe
Confidence            45676666653  56789999998876543 332111  1234555553   2211        111 676666443222


Q ss_pred             cCCCceeeeccccccceeEeCceEEEEEeeeccCCC--CCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEE-CC-
Q 018497          170 YGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDN--SCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF-DG-  244 (355)
Q Consensus       170 ~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~--~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~-~G-  244 (355)
                       ......  ...    .+.-+|...+.+...  .+.  .....|..+|+.+.+.... ..+ ..     ...+.-. +| 
T Consensus       251 -~~~~~~--~~~----~~~~~g~~l~~~~~~--~~~~~~~dg~i~~~d~~~~~~~~~~~~~-~~-----~~~~~~~~~g~  315 (433)
T 3bws_A          251 -DKIGLP--RGL----LLSKDGKELYIAQFS--ASNQESGGGRLGIYSMDKEKLIDTIGPP-GN-----KRHIVSGNTEN  315 (433)
T ss_dssp             -CCCSEE--EEE----EECTTSSEEEEEEEE--SCTTCSCCEEEEEEETTTTEEEEEEEEE-EC-----EEEEEECSSTT
T ss_pred             -cCCCCc--eEE----EEcCCCCEEEEEECC--CCccccCCCeEEEEECCCCcEEeeccCC-CC-----cceEEECCCCC
Confidence             111111  100    222366555555432  000  0235899999987765433 323 21     1122222 35 


Q ss_pred             eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeC--------------CceE
Q 018497          245 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH--------------GGYG  310 (355)
Q Consensus       245 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~--------------~~~~  310 (355)
                      .|++....+    ..+.+|.++.      ......++... ....+++..+|+.++.+ ...              ++ .
T Consensus       316 ~l~~~~~~~----~~v~v~d~~~------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~-~~~~~~~~~~~~~~g~~dg-~  382 (433)
T 3bws_A          316 KIYVSDMCC----SKIEVYDLKE------KKVQKSIPVFD-KPNTIALSPDGKYLYVS-CRGPNHPTEGYLKKGLVLG-K  382 (433)
T ss_dssp             EEEEEETTT----TEEEEEETTT------TEEEEEEECSS-SEEEEEECTTSSEEEEE-ECCCCCTTTCTTSCCSSCC-E
T ss_pred             EEEEEecCC----CEEEEEECCC------CcEEEEecCCC-CCCeEEEcCCCCEEEEE-ecCCCccccccccccccce-E
Confidence            455554444    4899998774      23344444332 24456677778644441 311              23 5


Q ss_pred             EEEEeCCCCeEEEE
Q 018497          311 LLVYNPHSDTFKCI  324 (355)
Q Consensus       311 l~~yd~~t~~~~~v  324 (355)
                      +..||+++++....
T Consensus       383 v~~~d~~~~~~~~~  396 (433)
T 3bws_A          383 VYVIDTTTDTVKEF  396 (433)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEEECCCCcEEEE
Confidence            99999999886543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=92.73  E-value=3.3  Score=36.65  Aligned_cols=100  Identities=10%  Similarity=-0.070  Sum_probs=53.3

Q ss_pred             cEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEE--CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 018497          209 WLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF--DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR  285 (355)
Q Consensus       209 ~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~--~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~  285 (355)
                      ..|..+|+.+.+.... ... ..  ......+.-.  ++.+.+++..+    ..+.+|-++..      .....+.....
T Consensus       204 g~v~~wd~~~~~~~~~~~~~-~~--~~~v~~v~~sp~~~~~la~g~~d----~~i~~wd~~~~------~~~~~~~~~~~  270 (357)
T 4g56_B          204 GRILLWDTRKPKPATRIDFC-AS--DTIPTSVTWHPEKDDTFACGDET----GNVSLVNIKNP------DSAQTSAVHSQ  270 (357)
T ss_dssp             SCEEECCTTSSSCBCBCCCT-TC--CSCEEEEEECTTSTTEEEEEESS----SCEEEEESSCG------GGCEEECCCSS
T ss_pred             CceEEEECCCCceeeeeeec-cc--cccccchhhhhcccceEEEeecc----cceeEEECCCC------cEeEEEeccce
Confidence            4688889887653322 221 11  1111223222  35666655554    48999988642      11222322221


Q ss_pred             eeEeEEEeeCC-cEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497          286 IWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       286 ~~~~~~~~~~g-~i~~~~~~~~~~~~l~~yd~~t~~~~~v  324 (355)
                      ....+++..+| .++..  ...++ .+.+||.++++....
T Consensus       271 ~v~~l~~sp~~~~~las--gs~D~-~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          271 NITGLAYSYHSSPFLAS--ISEDC-TVAVLDADFSEVFRD  307 (357)
T ss_dssp             CEEEEEECSSSSCCEEE--EETTS-CEEEECTTSCEEEEE
T ss_pred             eEEEEEEcCCCCCEEEE--EeCCC-EEEEEECCCCcEeEE
Confidence            24456666666 55555  32567 499999999876543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=92.65  E-value=4.6  Score=34.92  Aligned_cols=187  Identities=8%  Similarity=0.006  Sum_probs=92.5

Q ss_pred             eCceEEEeecCCCCceEEEEcCCcccEE-ecCCCCCCC-------ceeEEEEecCCCCCCcEE---------EE-EEcCC
Q 018497          101 CNGVLCFCSNGSDRSLIYLWNPLIKKYM-TLPRPSLNP-------RYLGFGVNSVSGHLDDFK---------VV-YSLRS  162 (355)
Q Consensus       101 ~~GLl~l~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~-------~~~~~g~d~~~~~~~~yk---------vv-yss~t  162 (355)
                      .++.+.+...  ....+.++|+.|++.. .++......       ...++.+++.   ++..-         |. |+.++
T Consensus        99 dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---g~~l~~~~~~~~~~i~~~d~~~  173 (353)
T 3vgz_A           99 TTQTLWFGNT--VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDA---TNTVYISGIGKESVIWVVDGGN  173 (353)
T ss_dssp             TTTEEEEEET--TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETT---TTEEEEEEESSSCEEEEEETTT
T ss_pred             CCCEEEEEec--CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCC---CCEEEEEecCCCceEEEEcCCC
Confidence            3444555553  4678999999998764 333321110       1245666664   33211         11 55554


Q ss_pred             CceeEeccCCC-ceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceee-EecCCCCCCCCCCceEEE
Q 018497          163 NSWKNIAYGFP-RSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLSTDDADKYLN  240 (355)
Q Consensus       163 ~~W~~~~~~~p-~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~-~i~lP~~~~~~~~~~~L~  240 (355)
                      ++=  +. ..+ ..... ...   .+.-+|...++....        ..|..+|+.+.+.. .+..+ ..........+.
T Consensus       174 ~~~--~~-~~~~~~~~~-~~~---~~s~dg~~l~~~~~~--------~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~  237 (353)
T 3vgz_A          174 IKL--KT-AIQNTGKMS-TGL---ALDSEGKRLYTTNAD--------GELITIDTADNKILSRKKLL-DDGKEHFFINIS  237 (353)
T ss_dssp             TEE--EE-EECCCCTTC-CCC---EEETTTTEEEEECTT--------SEEEEEETTTTEEEEEEECC-CSSSCCCEEEEE
T ss_pred             Cce--EE-EecCCCCcc-ceE---EECCCCCEEEEEcCC--------CeEEEEECCCCeEEEEEEcC-CCCCCcccceEE
Confidence            322  11 111 00000 100   233366544443322        48889999887764 34553 221111222234


Q ss_pred             EE-CCe-EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCc-EEEEEEeeCCceEEEEEeCC
Q 018497          241 VF-DGY-LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFIRGECRHGGYGLLVYNPH  317 (355)
Q Consensus       241 ~~-~G~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~~l~~yd~~  317 (355)
                      .. +|+ |++... ..   ..+.+|-++.    .+-  ...++...  ...+.+..+|+ +|+.  ...++ .+.+||.+
T Consensus       238 ~s~dg~~l~~~~~-~~---~~v~~~d~~~----~~~--~~~~~~~~--~~~~~~s~dg~~l~v~--~~~~~-~v~~~d~~  302 (353)
T 3vgz_A          238 LDTARQRAFITDS-KA---AEVLVVDTRN----GNI--LAKVAAPE--SLAVLFNPARNEAYVT--HRQAG-KVSVIDAK  302 (353)
T ss_dssp             EETTTTEEEEEES-SS---SEEEEEETTT----CCE--EEEEECSS--CCCEEEETTTTEEEEE--ETTTT-EEEEEETT
T ss_pred             ECCCCCEEEEEeC-CC---CEEEEEECCC----CcE--EEEEEcCC--CceEEECCCCCEEEEE--ECCCC-eEEEEECC
Confidence            33 354 655543 32   4787886653    222  33333322  12366677776 6666  42345 59999999


Q ss_pred             CCeEEE
Q 018497          318 SDTFKC  323 (355)
Q Consensus       318 t~~~~~  323 (355)
                      +++...
T Consensus       303 ~~~~~~  308 (353)
T 3vgz_A          303 SYKVVK  308 (353)
T ss_dssp             TTEEEE
T ss_pred             CCeEEE
Confidence            988654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=92.62  E-value=4.8  Score=35.08  Aligned_cols=206  Identities=8%  Similarity=-0.004  Sum_probs=101.8

Q ss_pred             EEEeeeCceEEEeecCCCCceEEEEcCCcccEE-ecCCCCCC--C-ceeEEEEecC----CCCCCcEEEE-EEcCCCcee
Q 018497           96 DVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYM-TLPRPSLN--P-RYLGFGVNSV----SGHLDDFKVV-YSLRSNSWK  166 (355)
Q Consensus        96 ~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~--~-~~~~~g~d~~----~~~~~~ykvv-yss~t~~W~  166 (355)
                      .+..+.+|.+.+...  ....+.++||.|++.. .++.....  . ...++.++..    .....+-.|. +|.++++..
T Consensus        88 ~i~~~~~g~lyv~~~--~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~  165 (328)
T 3dsm_A           88 YIHFLSDEKAYVTQI--WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVV  165 (328)
T ss_dssp             EEEEEETTEEEEEEB--SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred             EEEEeCCCeEEEEEC--CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence            444557787766653  4678999999998765 34433200  0 0012222211    0000011232 888887654


Q ss_pred             EeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCC----CCcEEEEEEcCCceee-EecCCCCCCCCCCceEEEE
Q 018497          167 NIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNS----CPWLIVSFDFAKEIFQ-TVMMPYDLSTDDADKYLNV  241 (355)
Q Consensus       167 ~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~----~~~~Il~fD~~~~~~~-~i~lP~~~~~~~~~~~L~~  241 (355)
                      ..- ......  ..-    .+.-+|.+|......  .+..    ....|..+|+.+.+.. .+.+| ...   ....++.
T Consensus       166 ~~i-~~g~~p--~~i----~~~~dG~l~v~~~~~--~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~---~p~~la~  232 (328)
T 3dsm_A          166 DEL-TIGIQP--TSL----VMDKYNKMWTITDGG--YEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LGD---WPSEVQL  232 (328)
T ss_dssp             EEE-ECSSCB--CCC----EECTTSEEEEEBCCB--CTTCSSCBCCCEEEEEETTTTEEEEEEECC-TTC---CCEEEEE
T ss_pred             EEE-EcCCCc--cce----EEcCCCCEEEEECCC--ccCCccccCCceEEEEECCCCeEEEEEecC-CCC---CceeEEE
Confidence            221 111111  100    223368877765432  0000    1268999999988775 45666 322   2234555


Q ss_pred             E--CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEee-CCcEEEEEEe----eCCceEEEEE
Q 018497          242 F--DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTE-RGKIFIRGEC----RHGGYGLLVY  314 (355)
Q Consensus       242 ~--~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~~~----~~~~~~l~~y  314 (355)
                      .  ++.|+++..         .||+++-..  ........++.......-+++.. +|.||+.  .    ..++ .|.+|
T Consensus       233 ~~d~~~lyv~~~---------~v~~~d~~t--~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva--~~~~y~~~~-~V~v~  298 (328)
T 3dsm_A          233 NGTRDTLYWINN---------DIWRMPVEA--DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA--DAIDYQQQG-IVYRY  298 (328)
T ss_dssp             CTTSCEEEEESS---------SEEEEETTC--SSCCSSCSBCCCSSCEEEEEECTTTCCEEEE--ECTTSSSEE-EEEEE
T ss_pred             ecCCCEEEEEcc---------EEEEEECCC--CceeeeeeecCCCCceEEEEEcCCCCeEEEE--cccccccCC-EEEEE
Confidence            5  345555321         355555321  11110001111110123355554 5688888  4    2344 69999


Q ss_pred             eCCCCeEEEEEEecCc
Q 018497          315 NPHSDTFKCIGVHLPY  330 (355)
Q Consensus       315 d~~t~~~~~v~~~~~~  330 (355)
                      |++.+.+..+.....+
T Consensus       299 d~~g~~~~~i~~G~~P  314 (328)
T 3dsm_A          299 SPQGKLIDEFYVGIIP  314 (328)
T ss_dssp             CTTCCEEEEEEEEESE
T ss_pred             CCCCCEEEEEEeccCc
Confidence            9997778888775544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=92.53  E-value=4.7  Score=34.79  Aligned_cols=55  Identities=13%  Similarity=0.334  Sum_probs=34.2

Q ss_pred             cEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCC----cEEEEEEeeCCceEEEEEeCCC
Q 018497          258 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG----KIFIRGECRHGGYGLLVYNPHS  318 (355)
Q Consensus       258 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g----~i~~~~~~~~~~~~l~~yd~~t  318 (355)
                      ..+.||.++.   ...|.....+.........+++..++    ..++.  ...++ .+.+||+++
T Consensus       189 ~~v~lWd~~~---~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las--~s~D~-~v~iw~~~~  247 (316)
T 3bg1_A          189 NLIKLWKEEE---DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS--CSQDG-RVFIWTCDD  247 (316)
T ss_dssp             SBCCEEEECT---TSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE--EETTC-EEEEEECSS
T ss_pred             CeEEEEEeCC---CCccceeeecccCCCceEEEEecCCCCCCCceEEE--EcCCC-eEEEEEccC
Confidence            4899999864   24577766654332234455555553    55555  43666 499999876

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=92.25  E-value=7.8  Score=36.65  Aligned_cols=189  Identities=12%  Similarity=0.058  Sum_probs=97.4

Q ss_pred             eCceEEEeecCCCCceEEEEcCCcccEEe-cCCCCCCCceeEEEEecCCCCCCcEEEE--------EEc--CCCceeEec
Q 018497          101 CNGVLCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNPRYLGFGVNSVSGHLDDFKVV--------YSL--RSNSWKNIA  169 (355)
Q Consensus       101 ~~GLl~l~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~g~d~~~~~~~~ykvv--------yss--~t~~W~~~~  169 (355)
                      -+|.+++...  .+..+.|+|+.|++... ++....   ..++.++|.   ++..-+.        ||.  ++++  .+.
T Consensus       147 p~~~~~vs~~--~d~~V~v~D~~t~~~~~~i~~g~~---~~~v~~spd---g~~l~v~~~d~~V~v~D~~~~t~~--~~~  216 (543)
T 1nir_A          147 LPNLFSVTLR--DAGQIALVDGDSKKIVKVIDTGYA---VHISRMSAS---GRYLLVIGRDARIDMIDLWAKEPT--KVA  216 (543)
T ss_dssp             GGGEEEEEEG--GGTEEEEEETTTCCEEEEEECSTT---EEEEEECTT---SCEEEEEETTSEEEEEETTSSSCE--EEE
T ss_pred             CCCEEEEEEc--CCCeEEEEECCCceEEEEEecCcc---cceEEECCC---CCEEEEECCCCeEEEEECcCCCCc--EEE
Confidence            3677766664  56789999999987653 432211   235556664   3222111        777  4432  222


Q ss_pred             cCCCceeeecccccccee-Ee-----CceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCC-C------CCC
Q 018497          170 YGFPRSIEINRSHINSSV-FL-----NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLS-T------DDA  235 (355)
Q Consensus       170 ~~~p~~~~~~~~~~~~~v-~~-----~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~-~------~~~  235 (355)
                       .++......      ++ +-     +|..-+.+...       ...|.++|..+.+. ..++.+ ... .      +..
T Consensus       217 -~i~~g~~p~------~va~sp~~~~dg~~l~v~~~~-------~~~v~v~D~~t~~~~~~i~~~-g~~~~~~~~~~~~~  281 (543)
T 1nir_A          217 -EIKIGIEAR------SVESSKFKGYEDRYTIAGAYW-------PPQFAIMDGETLEPKQIVSTR-GMTVDTQTYHPEPR  281 (543)
T ss_dssp             -EEECCSEEE------EEEECCSTTCTTTEEEEEEEE-------SSEEEEEETTTCCEEEEEECC-EECSSSCCEESCCC
T ss_pred             -EEecCCCcc------eEEeCCCcCCCCCEEEEEEcc-------CCeEEEEeccccccceeeccc-CcccCccccccCCc
Confidence             222111111      22 22     67544444332       25789999887655 444543 211 0      001


Q ss_pred             ceEEEEEC-CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEE
Q 018497          236 DKYLNVFD-GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVY  314 (355)
Q Consensus       236 ~~~L~~~~-G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~y  314 (355)
                      ...+.... |...++...+.   ..+.+|-..+..  .  .++.+++... ...-+++..+|+.++.. ...+. ++.++
T Consensus       282 v~~i~~s~~~~~~~vs~~~~---g~i~vvd~~~~~--~--l~~~~i~~~~-~~~~~~~spdg~~l~va-~~~~~-~v~v~  351 (543)
T 1nir_A          282 VAAIIASHEHPEFIVNVKET---GKVLLVNYKDID--N--LTVTSIGAAP-FLHDGGWDSSHRYFMTA-ANNSN-KVAVI  351 (543)
T ss_dssp             EEEEEECSSSSEEEEEETTT---TEEEEEECTTSS--S--CEEEEEECCS-SCCCEEECTTSCEEEEE-EGGGT-EEEEE
T ss_pred             eEEEEECCCCCEEEEEECCC---CeEEEEEecCCC--c--ceeEEeccCc-CccCceECCCCCEEEEE-ecCCC-eEEEE
Confidence            12333332 55555555444   577777766521  1  2233454332 24447778888754441 31234 59999


Q ss_pred             eCCCCeEEEE
Q 018497          315 NPHSDTFKCI  324 (355)
Q Consensus       315 d~~t~~~~~v  324 (355)
                      |.+++++...
T Consensus       352 D~~tg~l~~~  361 (543)
T 1nir_A          352 DSKDRRLSAL  361 (543)
T ss_dssp             ETTTTEEEEE
T ss_pred             ECCCCeEEEe
Confidence            9999987553

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=92.24  E-value=9.7  Score=37.69  Aligned_cols=191  Identities=13%  Similarity=0.102  Sum_probs=101.7

Q ss_pred             eCceEEEeecCCCCceEEEEcCCcccEEecCCCCCC-CceeEEEEecCCCCCCcE-----EEE-EEcCCCceeEeccCCC
Q 018497          101 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLN-PRYLGFGVNSVSGHLDDF-----KVV-YSLRSNSWKNIAYGFP  173 (355)
Q Consensus       101 ~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~-~~~~~~g~d~~~~~~~~y-----kvv-yss~t~~W~~~~~~~p  173 (355)
                      .+|-|.+..   ....++.+||.|+++..++..... .....+..|+.   ..=+     -+. |+.+++.|+... ..+
T Consensus       416 ~~g~lWigt---~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~---g~lwigt~~Gl~~~~~~~~~~~~~~-~~~  488 (781)
T 3v9f_A          416 SEGNLWFGT---YLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKN---KKIWIGTHAGVFVIDLASKKVIHHY-DTS  488 (781)
T ss_dssp             TTSCEEEEE---TTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTT---SEEEEEETTEEEEEESSSSSCCEEE-CTT
T ss_pred             CCCCEEEEe---ccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCC---CCEEEEECCceEEEeCCCCeEEecc-cCc
Confidence            356665554   346789999999999887653111 11244555543   2100     122 888888887765 222


Q ss_pred             c-eeeeccccccceeEe--CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEE-ECCeEEEE
Q 018497          174 R-SIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNV-FDGYLCVF  249 (355)
Q Consensus       174 ~-~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~-~~G~L~~v  249 (355)
                      . ......-.   ++..  +|.+ |++...        ..|..||..++++..+..+ ..........+.+ .+|.|.+.
T Consensus       489 ~~~~~~~~i~---~i~~d~~g~l-Wigt~~--------~Gl~~~~~~~~~~~~~~~~-~~l~~~~i~~i~~d~~g~lWi~  555 (781)
T 3v9f_A          489 NSQLLENFVR---SIAQDSEGRF-WIGTFG--------GGVGIYTPDMQLVRKFNQY-EGFCSNTINQIYRSSKGQMWLA  555 (781)
T ss_dssp             TSSCSCSCEE---EEEECTTCCE-EEEESS--------SCEEEECTTCCEEEEECTT-TTCSCSCEEEEEECTTSCEEEE
T ss_pred             ccccccceeE---EEEEcCCCCE-EEEEcC--------CCEEEEeCCCCeEEEccCC-CCCCCCeeEEEEECCCCCEEEE
Confidence            1 00000001   2332  4555 555432        3689999999999887544 4333323334444 35788776


Q ss_pred             EecCCCCccEEEEEEeccCCCCCCeEEEEEec-CCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEE
Q 018497          250 ATIPNNTFRSYELWVMKEYGLTESWTKLYTIE-KPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       250 ~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~  325 (355)
                      +. .     .+ |..++..  +..+.....-+ +.......+....+|.|.+.  . ..+  +..||+++++++...
T Consensus       556 T~-~-----Gl-v~~~d~~--~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~--t-~~G--l~~~~~~~~~~~~~~  618 (781)
T 3v9f_A          556 TG-E-----GL-VCFPSAR--NFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS--T-NTG--ISCYITSKKCFYTYD  618 (781)
T ss_dssp             ET-T-----EE-EEESCTT--TCCCEEECGGGTCSCCCCCEEEECSSSCEEEE--C-SSC--EEEEETTTTEEEEEC
T ss_pred             EC-C-----Cc-eEEECCC--CCcEEEccccCCCCCceEEEEEECCCCCEEEE--c-CCc--eEEEECCCCceEEec
Confidence            54 2     22 1233321  12333221111 11112233444567788888  5 343  999999999887763

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=91.70  E-value=5.7  Score=33.88  Aligned_cols=97  Identities=11%  Similarity=0.132  Sum_probs=56.5

Q ss_pred             cEEEEEEcCCceeeE-ecCCCCCCCCCCceEEEEE-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 018497          209 WLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI  286 (355)
Q Consensus       209 ~~Il~fD~~~~~~~~-i~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~  286 (355)
                      ..|..+|+.+.+... +... ..    ....+.-. +|+..++...+    ..+.+|.++..      .....+.... .
T Consensus       163 g~v~~~d~~~~~~~~~~~~~-~~----~i~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~------~~~~~~~~~~-~  226 (337)
T 1gxr_A          163 GNIAVWDLHNQTLVRQFQGH-TD----GASCIDISNDGTKLWTGGLD----NTVRSWDLREG------RQLQQHDFTS-Q  226 (337)
T ss_dssp             SCEEEEETTTTEEEEEECCC-SS----CEEEEEECTTSSEEEEEETT----SEEEEEETTTT------EEEEEEECSS-C
T ss_pred             CcEEEEeCCCCceeeeeecc-cC----ceEEEEECCCCCEEEEEecC----CcEEEEECCCC------ceEeeecCCC-c
Confidence            478999998876533 2222 11    11223333 46666666655    48999988741      2333333332 2


Q ss_pred             eEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497          287 WWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       287 ~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v  324 (355)
                      ...+.+..+|..++.  ...++ .+..||+++++...+
T Consensus       227 v~~~~~s~~~~~l~~--~~~~~-~i~~~~~~~~~~~~~  261 (337)
T 1gxr_A          227 IFSLGYCPTGEWLAV--GMESS-NVEVLHVNKPDKYQL  261 (337)
T ss_dssp             EEEEEECTTSSEEEE--EETTS-CEEEEETTSSCEEEE
T ss_pred             eEEEEECCCCCEEEE--EcCCC-cEEEEECCCCCeEEE
Confidence            444666677776666  42566 499999998876544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=91.57  E-value=5.5  Score=33.45  Aligned_cols=192  Identities=11%  Similarity=0.071  Sum_probs=99.6

Q ss_pred             EEEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcE-------EEE-EEcCCCceeE
Q 018497           96 DVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDF-------KVV-YSLRSNSWKN  167 (355)
Q Consensus        96 ~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~y-------kvv-yss~t~~W~~  167 (355)
                      .+....+|-+.+...  ....++++||. ++...++.+.......++.+|+.   ..-|       +|. |+.. +..+.
T Consensus        66 ~i~~~~~g~l~v~~~--~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~-g~~~~  138 (300)
T 2qc5_A           66 CLIVSSLGDIWFTEN--GANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN---GDIWFTQLNGDRIGKLTAD-GTIYE  138 (300)
T ss_dssp             EEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST---TCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             eEEECCCCCEEEEec--CCCeEEEECCC-CCeEEecCCCCCCCCccceECCC---CCEEEEccCCCeEEEECCC-CCEEE
Confidence            344445677766652  45789999998 66665443322222356666653   2211       121 5554 44443


Q ss_pred             eccCCCceeeeccccccceeE--eCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CC
Q 018497          168 IAYGFPRSIEINRSHINSSVF--LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DG  244 (355)
Q Consensus       168 ~~~~~p~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G  244 (355)
                      ..  .+....  ...   ++.  -+|.+|+.....        ..|..||. +.++..+.+| ....  ....++.. +|
T Consensus       139 ~~--~~~~~~--~~~---~i~~d~~g~l~v~~~~~--------~~i~~~~~-~g~~~~~~~~-~~~~--~~~~i~~d~~g  199 (300)
T 2qc5_A          139 YD--LPNKGS--YPA---FITLGSDNALWFTENQN--------NSIGRITN-TGKLEEYPLP-TNAA--APVGITSGNDG  199 (300)
T ss_dssp             EE--CSSTTC--CEE---EEEECTTSSEEEEETTT--------TEEEEECT-TCCEEEEECS-STTC--CEEEEEECTTS
T ss_pred             cc--CCCCCC--Cce---eEEECCCCCEEEEecCC--------CeEEEECC-CCcEEEeeCC-CCCC--CcceEEECCCC
Confidence            32  111000  011   333  368877765433        57999999 6667666665 4331  22334443 58


Q ss_pred             eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497          245 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       245 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v  324 (355)
                      .|++.....    ..+.++..  .   ..... ..++........+++..+|.|++.  ....+ .+..||+ ++++..+
T Consensus       200 ~l~v~~~~~----~~i~~~~~--~---g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~-~i~~~~~-~g~~~~~  265 (300)
T 2qc5_A          200 ALWFVEIMG----NKIGRITT--T---GEISE-YDIPTPNARPHAITAGKNSEIWFT--EWGAN-QIGRITN-DNTIQEY  265 (300)
T ss_dssp             SEEEEETTT----TEEEEECT--T---CCEEE-EECSSTTCCEEEEEECSTTCEEEE--ETTTT-EEEEECT-TSCEEEE
T ss_pred             CEEEEccCC----CEEEEEcC--C---CcEEE-EECCCCCCCceEEEECCCCCEEEe--ccCCC-eEEEECC-CCcEEEE
Confidence            888876543    24544433  1   22333 223321112334555667888888  52335 5999999 5666655


Q ss_pred             EEe
Q 018497          325 GVH  327 (355)
Q Consensus       325 ~~~  327 (355)
                      .+.
T Consensus       266 ~~~  268 (300)
T 2qc5_A          266 QLQ  268 (300)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=91.54  E-value=6.4  Score=34.17  Aligned_cols=113  Identities=12%  Similarity=0.111  Sum_probs=58.5

Q ss_pred             eeEe--C-ceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEECCeEEEEEecCC---CCcc
Q 018497          186 SVFL--N-GSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPN---NTFR  258 (355)
Q Consensus       186 ~v~~--~-G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~---~~~~  258 (355)
                      ++.+  + |.+|+.....        ..|..||+.+.++ ..+..+ ....  ....+....|.++.......   ....
T Consensus       200 gia~d~~~g~l~v~d~~~--------~~I~~~~~~~G~~~~~~~~~-~~~~--~~~~~~~~pg~~~~~~g~~~v~~~~~~  268 (329)
T 3fvz_A          200 SLALVPHLDQLCVADREN--------GRIQCFKTDTKEFVREIKHA-SFGR--NVFAISYIPGFLFAVNGKPYFGDQEPV  268 (329)
T ss_dssp             EEEEETTTTEEEEEETTT--------TEEEEEETTTCCEEEEECCT-TTTT--CEEEEEEETTEEEEEECCCCTTCSCCC
T ss_pred             EEEEECCCCEEEEEECCC--------CEEEEEECCCCcEEEEEecc-ccCC--CcceeeecCCEEEEeCCCEEeccCCCc
Confidence            5555  4 8999887654        6899999985555 445544 2221  12223333344444433211   1123


Q ss_pred             EEEEEEeccCCCCCCeEEEEEec--CCCc-eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCC
Q 018497          259 SYELWVMKEYGLTESWTKLYTIE--KPQR-IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHS  318 (355)
Q Consensus       259 ~l~iW~l~~~~~~~~W~~~~~i~--~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t  318 (355)
                      .+.+|.++.    .+  .+..+.  ...+ ...-+++..+|.||+.  ...++ .+..|+++.
T Consensus       269 ~v~~~~~~~----g~--~~~~~~~~~~~~~~p~~ia~~~dG~lyva--d~~~~-~I~~~~~~~  322 (329)
T 3fvz_A          269 QGFVMNFSS----GE--IIDVFKPVRKHFDMPHDIVASEDGTVYIG--DAHTN-TVWKFTLTE  322 (329)
T ss_dssp             CEEEEETTT----CC--EEEEECCSSSCCSSEEEEEECTTSEEEEE--ESSSC-CEEEEEEEE
T ss_pred             EEEEEEcCC----Ce--EEEEEcCCCCccCCeeEEEECCCCCEEEE--ECCCC-EEEEEeCCc
Confidence            666776553    22  223332  1111 2334566677777777  52334 477777654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=91.52  E-value=4.9  Score=34.12  Aligned_cols=112  Identities=13%  Similarity=0.036  Sum_probs=66.5

Q ss_pred             eEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEe
Q 018497          187 VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM  265 (355)
Q Consensus       187 v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l  265 (355)
                      ...++.+|.+....        ..+.+||..+.+- ..++.+ ..     ...|+.-+++|++... .    .+  ||.+
T Consensus        93 t~~g~~ly~ltw~~--------~~v~v~D~~t~~~~~ti~~~-~e-----G~glt~dg~~L~~SdG-s----~~--i~~i  151 (262)
T 3nol_A           93 SDWKDKIVGLTWKN--------GLGFVWNIRNLRQVRSFNYD-GE-----GWGLTHNDQYLIMSDG-T----PV--LRFL  151 (262)
T ss_dssp             EEETTEEEEEESSS--------SEEEEEETTTCCEEEEEECS-SC-----CCCEEECSSCEEECCS-S----SE--EEEE
T ss_pred             EEeCCEEEEEEeeC--------CEEEEEECccCcEEEEEECC-CC-----ceEEecCCCEEEEECC-C----Ce--EEEE
Confidence            34577888887655        6899999987654 556766 32     2345554567776543 2    23  6777


Q ss_pred             ccCCCCCCeEEEEEecCCCc-----eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE-EEEEEe
Q 018497          266 KEYGLTESWTKLYTIEKPQR-----IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF-KCIGVH  327 (355)
Q Consensus       266 ~~~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~-~~v~~~  327 (355)
                      +-..    =..+.+|.....     ...-+. +.+|+||..  . ...+.+...|++|+++ ..+...
T Consensus       152 Dp~T----~~v~~~I~V~~~g~~~~~lNELe-~~~G~lyan--~-w~~~~I~vIDp~tG~V~~~Id~~  211 (262)
T 3nol_A          152 DPES----LTPVRTITVTAHGEELPELNELE-WVDGEIFAN--V-WQTNKIVRIDPETGKVTGIIDLN  211 (262)
T ss_dssp             CTTT----CSEEEEEECEETTEECCCEEEEE-EETTEEEEE--E-TTSSEEEEECTTTCBEEEEEECT
T ss_pred             cCCC----CeEEEEEEeccCCccccccceeE-EECCEEEEE--E-ccCCeEEEEECCCCcEEEEEECC
Confidence            7421    233444443210     000122 237888877  5 4444699999999997 445653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=91.45  E-value=5.7  Score=33.39  Aligned_cols=194  Identities=9%  Similarity=0.086  Sum_probs=101.7

Q ss_pred             EEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCC----CceeEEEEecCCCCCCcE---------EEE-EEcCC
Q 018497           97 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLN----PRYLGFGVNSVSGHLDDF---------KVV-YSLRS  162 (355)
Q Consensus        97 ~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~----~~~~~~g~d~~~~~~~~y---------kvv-yss~t  162 (355)
                      +.-+.+|-+.+...  ....+.++||..+....++.....    ....++.+++.   .+..         +|. |+...
T Consensus        35 v~~~~~g~l~v~~~--~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~---~g~l~v~~~~~~~~i~~~d~~g  109 (286)
T 1q7f_A           35 VAVNAQNDIIVADT--NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRN---SGDIIVTERSPTHQIQIYNQYG  109 (286)
T ss_dssp             EEECTTCCEEEEEG--GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETT---TTEEEEEECGGGCEEEEECTTS
T ss_pred             EEECCCCCEEEEEC--CCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcC---CCeEEEEcCCCCCEEEEECCCC
Confidence            33445677766653  456899999986665666542211    11255666432   2221         222 55332


Q ss_pred             CceeEeccCCCceeeeccccccceeE--eCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEE
Q 018497          163 NSWKNIAYGFPRSIEINRSHINSSVF--LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLN  240 (355)
Q Consensus       163 ~~W~~~~~~~p~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~  240 (355)
                      ..-+.+. .....    ...   ++.  -+|.+|......        ..|..||...+....+..+ ....  ....++
T Consensus       110 ~~~~~~~-~~~~~----~~~---~i~~~~~g~l~v~~~~~--------~~i~~~~~~g~~~~~~~~~-~~~~--~p~~i~  170 (286)
T 1q7f_A          110 QFVRKFG-ATILQ----HPR---GVTVDNKGRIIVVECKV--------MRVIIFDQNGNVLHKFGCS-KHLE--FPNGVV  170 (286)
T ss_dssp             CEEEEEC-TTTCS----CEE---EEEECTTSCEEEEETTT--------TEEEEECTTSCEEEEEECT-TTCS--SEEEEE
T ss_pred             cEEEEec-CccCC----Cce---EEEEeCCCCEEEEECCC--------CEEEEEcCCCCEEEEeCCC-CccC--CcEEEE
Confidence            2222222 11100    011   333  368877765433        5899999887766666433 2221  223344


Q ss_pred             EE-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC-c-eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCC
Q 018497          241 VF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ-R-IWWPLGFTERGKIFIRGECRHGGYGLLVYNPH  317 (355)
Q Consensus       241 ~~-~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~-~-~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~  317 (355)
                      .. +|+|++.....    ..+.+|..+     ...  +..+.... + ...-+++..+|.+++.  ...+...+..||.+
T Consensus       171 ~~~~g~l~v~~~~~----~~i~~~~~~-----g~~--~~~~~~~g~~~~p~~i~~d~~G~l~v~--~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          171 VNDKQEIFISDNRA----HCVKVFNYE-----GQY--LRQIGGEGITNYPIGVGINSNGEILIA--DNHNNFNLTIFTQD  237 (286)
T ss_dssp             ECSSSEEEEEEGGG----TEEEEEETT-----CCE--EEEESCTTTSCSEEEEEECTTCCEEEE--ECSSSCEEEEECTT
T ss_pred             ECCCCCEEEEECCC----CEEEEEcCC-----CCE--EEEEccCCccCCCcEEEECCCCCEEEE--eCCCCEEEEEECCC
Confidence            43 48888776544    377777543     112  22333221 1 2334566677888888  52332149999998


Q ss_pred             CCeEEEEEEe
Q 018497          318 SDTFKCIGVH  327 (355)
Q Consensus       318 t~~~~~v~~~  327 (355)
                      .+.+..+...
T Consensus       238 g~~~~~~~~~  247 (286)
T 1q7f_A          238 GQLISALESK  247 (286)
T ss_dssp             SCEEEEEEES
T ss_pred             CCEEEEEccc
Confidence            8877777543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=91.22  E-value=6.4  Score=33.54  Aligned_cols=112  Identities=13%  Similarity=0.031  Sum_probs=66.3

Q ss_pred             eEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEe
Q 018497          187 VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM  265 (355)
Q Consensus       187 v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l  265 (355)
                      ...++.||.+....        ..+.+||..+.+- ..++.+ ..     ...|+.-+++|++... .    .  .|+.+
T Consensus       102 t~~g~~Ly~ltw~~--------~~v~V~D~~Tl~~~~ti~~~-~e-----GwGLt~Dg~~L~vSdG-s----~--~l~~i  160 (268)
T 3nok_A          102 ASDGERLYQLTWTE--------GLLFTWSGMPPQRERTTRYS-GE-----GWGLCYWNGKLVRSDG-G----T--MLTFH  160 (268)
T ss_dssp             EECSSCEEEEESSS--------CEEEEEETTTTEEEEEEECS-SC-----CCCEEEETTEEEEECS-S----S--EEEEE
T ss_pred             EEeCCEEEEEEccC--------CEEEEEECCcCcEEEEEeCC-Cc-----eeEEecCCCEEEEECC-C----C--EEEEE
Confidence            34567888887655        6899999987655 556665 32     2345666677777653 2    2  35666


Q ss_pred             ccCCCCCCeEEEEEecCCCc-----eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE-EEEEEe
Q 018497          266 KEYGLTESWTKLYTIEKPQR-----IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF-KCIGVH  327 (355)
Q Consensus       266 ~~~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~-~~v~~~  327 (355)
                      +-..  .  ..+.+|.....     ...-+. +.+|+||..  . ...+.+...|++|+++ ..+...
T Consensus       161 Dp~T--~--~v~~~I~V~~~g~~v~~lNeLe-~~dG~lyan--v-w~s~~I~vIDp~TG~V~~~Idl~  220 (268)
T 3nok_A          161 EPDG--F--ALVGAVQVKLRGQPVELINELE-CANGVIYAN--I-WHSSDVLEIDPATGTVVGVIDAS  220 (268)
T ss_dssp             CTTT--C--CEEEEEECEETTEECCCEEEEE-EETTEEEEE--E-TTCSEEEEECTTTCBEEEEEECH
T ss_pred             cCCC--C--eEEEEEEeCCCCcccccccccE-EeCCEEEEE--E-CCCCeEEEEeCCCCcEEEEEECC
Confidence            6421  1  33344443211     011122 237888877  5 4434699999999997 556654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=91.13  E-value=10  Score=35.80  Aligned_cols=108  Identities=8%  Similarity=0.001  Sum_probs=64.2

Q ss_pred             cEEEEEEcCCceeeE-ecCCCCCCCCCCceEEEEEC-CeEEEEEecCCCCccEEEEEEeccCC-CCCCeEEEEEecCCCc
Q 018497          209 WLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVFD-GYLCVFATIPNNTFRSYELWVMKEYG-LTESWTKLYTIEKPQR  285 (355)
Q Consensus       209 ~~Il~fD~~~~~~~~-i~lP~~~~~~~~~~~L~~~~-G~L~~v~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~~~~~  285 (355)
                      ..|.++|+.+.+... ++.. .....+....+..-+ |.+++......   .++.||-.+..+ .+..|..+.++.....
T Consensus       346 ~~v~v~D~~tg~l~~~i~~g-~~ph~g~g~~~~~p~~g~~~~s~~~~d---~~V~v~d~~~~~~~~~~~~~v~~l~~~g~  421 (543)
T 1nir_A          346 NKVAVIDSKDRRLSALVDVG-KTPHPGRGANFVHPKYGPVWSTSHLGD---GSISLIGTDPKNHPQYAWKKVAELQGQGG  421 (543)
T ss_dssp             TEEEEEETTTTEEEEEEECS-SSBCCTTCEEEEETTTEEEEEEEBSSS---SEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred             CeEEEEECCCCeEEEeeccC-CCCCCCCCcccCCCCCccEEEeccCCC---ceEEEEEeCCCCCchhcCeEEEEEEcCCC
Confidence            589999999887644 3432 111111223333334 66665554333   589999987521 1245999999886532


Q ss_pred             eeEeEEEeeCCcEEEEEEee--C-C---ceEEEEEeCCCCeEE
Q 018497          286 IWWPLGFTERGKIFIRGECR--H-G---GYGLLVYNPHSDTFK  322 (355)
Q Consensus       286 ~~~~~~~~~~g~i~~~~~~~--~-~---~~~l~~yd~~t~~~~  322 (355)
                      ....+.++.+|+.+++  ..  . +   .+.+.+||.+|.+..
T Consensus       422 ~~~~v~~~pdg~~l~v--~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          422 GSLFIKTHPKSSHLYV--DTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             CCCCEECCTTCCEEEE--CCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             CceEEEcCCCCCcEEE--ecCCCCCcccCceEEEEECCCCCCC
Confidence            2345677888866666  31  1 1   126999999987653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=91.11  E-value=6.4  Score=33.35  Aligned_cols=34  Identities=12%  Similarity=0.029  Sum_probs=23.5

Q ss_pred             EEeeeCceEEEeecCCCCceEEEEcCCcccEEecCC
Q 018497           97 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPR  132 (355)
Q Consensus        97 ~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~  132 (355)
                      +.-+.+|.+.+...  ....+.++||.+++...+..
T Consensus        74 l~~~~dg~l~v~~~--~~~~i~~~d~~~g~~~~~~~  107 (296)
T 3e5z_A           74 HCLNKQGHLIACSH--GLRRLERQREPGGEWESIAD  107 (296)
T ss_dssp             EEECTTCCEEEEET--TTTEEEEECSTTCCEEEEEC
T ss_pred             eeECCCCcEEEEec--CCCeEEEEcCCCCcEEEEee
Confidence            44445777666652  45789999999998876643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=90.94  E-value=6.4  Score=33.03  Aligned_cols=112  Identities=12%  Similarity=0.017  Sum_probs=67.5

Q ss_pred             eEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEe
Q 018497          187 VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM  265 (355)
Q Consensus       187 v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l  265 (355)
                      ...++.+|-+....        ..+.+||..+-+- ..++.| .     ....|+.-+++|++... .    .+  |+++
T Consensus        71 ~~~~~~ly~ltw~~--------~~v~v~D~~tl~~~~ti~~~-~-----~Gwglt~dg~~L~vSdg-s----~~--l~~i  129 (243)
T 3mbr_X           71 VAWRDRLIQLTWRN--------HEGFVYDLATLTPRARFRYP-G-----EGWALTSDDSHLYMSDG-T----AV--IRKL  129 (243)
T ss_dssp             EEETTEEEEEESSS--------SEEEEEETTTTEEEEEEECS-S-----CCCEEEECSSCEEEECS-S----SE--EEEE
T ss_pred             EEeCCEEEEEEeeC--------CEEEEEECCcCcEEEEEeCC-C-----CceEEeeCCCEEEEECC-C----Ce--EEEE
Confidence            45678999987665        7899999987655 556666 3     23456655677877653 2    24  5677


Q ss_pred             ccCCCCCCeEEEEEecCCCc-----eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE-EEEEEe
Q 018497          266 KEYGLTESWTKLYTIEKPQR-----IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF-KCIGVH  327 (355)
Q Consensus       266 ~~~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~-~~v~~~  327 (355)
                      +-.    .=..+.+|.....     ...-+. ..+|+||..  . ...+.+.+.|++|+++ ..+...
T Consensus       130 Dp~----t~~~~~~I~V~~~g~~~~~lNeLe-~~~G~lyan--v-w~s~~I~vIDp~tG~V~~~idl~  189 (243)
T 3mbr_X          130 DPD----TLQQVGSIKVTAGGRPLDNLNELE-WVNGELLAN--V-WLTSRIARIDPASGKVVAWIDLQ  189 (243)
T ss_dssp             CTT----TCCEEEEEECEETTEECCCEEEEE-EETTEEEEE--E-TTTTEEEEECTTTCBEEEEEECG
T ss_pred             eCC----CCeEEEEEEEccCCcccccceeeE-EeCCEEEEE--E-CCCCeEEEEECCCCCEEEEEECC
Confidence            642    1233344443211     010111 247888876  5 3333699999999997 455654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=90.62  E-value=7.9  Score=33.58  Aligned_cols=132  Identities=13%  Similarity=0.103  Sum_probs=66.9

Q ss_pred             ceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcEEEE---------EEcCCC--ceeEeccCC-Cc--eeeecc
Q 018497          115 SLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVV---------YSLRSN--SWKNIAYGF-PR--SIEINR  180 (355)
Q Consensus       115 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykvv---------yss~t~--~W~~~~~~~-p~--~~~~~~  180 (355)
                      ..++++|+.|++....-.........++.+|+.   .+ .-|.         |+..+.  .=..+.... +.  ......
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~---g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~  144 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD---GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQ  144 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTT---SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSS
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCC---CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCC
Confidence            369999999988764322111112266777764   33 2222         554433  111121000 00  000001


Q ss_pred             ccccceeEe---CceEEEEEe-eeccCCCCCCcEEEEEEcCCceeeEecCCCCCC------CCCCceEEEEE-C-CeEEE
Q 018497          181 SHINSSVFL---NGSVHWCAR-FSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS------TDDADKYLNVF-D-GYLCV  248 (355)
Q Consensus       181 ~~~~~~v~~---~G~lyw~~~-~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~------~~~~~~~L~~~-~-G~L~~  248 (355)
                      ..   ++.+   +|.+|+... ..        ..|..||........+..+ ...      .......++.. + |.|++
T Consensus       145 P~---~ia~~~~~g~lyv~d~~~~--------~~I~~~~~~g~~~~~~~~~-g~~~~~~~~~~~~p~gia~d~~~g~l~v  212 (329)
T 3fvz_A          145 PT---DVAVEPSTGAVFVSDGYCN--------SRIVQFSPSGKFVTQWGEE-SSGSSPRPGQFSVPHSLALVPHLDQLCV  212 (329)
T ss_dssp             EE---EEEECTTTCCEEEEECSSC--------CEEEEECTTSCEEEEECEE-CCSSSCCTTEESCEEEEEEETTTTEEEE
T ss_pred             Cc---EEEEeCCCCeEEEEeCCCC--------CeEEEEcCCCCEEEEeccC-CCCCCCCCcccCCCcEEEEECCCCEEEE
Confidence            11   4444   689999874 33        5899999776665555322 111      00112234443 3 78888


Q ss_pred             EEecCCCCccEEEEEEec
Q 018497          249 FATIPNNTFRSYELWVMK  266 (355)
Q Consensus       249 v~~~~~~~~~~l~iW~l~  266 (355)
                      +....    ..+.+|..+
T Consensus       213 ~d~~~----~~I~~~~~~  226 (329)
T 3fvz_A          213 ADREN----GRIQCFKTD  226 (329)
T ss_dssp             EETTT----TEEEEEETT
T ss_pred             EECCC----CEEEEEECC
Confidence            77654    488888766

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=90.40  E-value=7.1  Score=32.70  Aligned_cols=192  Identities=9%  Similarity=0.023  Sum_probs=99.2

Q ss_pred             EEEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcE-------EEE-EEcCCCceeE
Q 018497           96 DVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDF-------KVV-YSLRSNSWKN  167 (355)
Q Consensus        96 ~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~y-------kvv-yss~t~~W~~  167 (355)
                      .+....+|.+.+...  ....++++||. ++...+..+.......++.+|+.   ..-|       +|. |+. ++..+.
T Consensus        61 ~i~~~~~g~l~v~~~--~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~d~-~g~~~~  133 (299)
T 2z2n_A           61 CLTISSDGEVWFTEN--AANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPN---GDIWFTEMNGNRIGRITD-DGKIRE  133 (299)
T ss_dssp             EEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECT-TCCEEE
T ss_pred             eEEECCCCCEEEeCC--CCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCC---CCEEEEecCCceEEEECC-CCCEEE
Confidence            344445777766652  45678999986 55544432211222356666654   2211       111 555 454444


Q ss_pred             eccCCCceeeeccccccceeEe--CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CC
Q 018497          168 IAYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DG  244 (355)
Q Consensus       168 ~~~~~p~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G  244 (355)
                      .. . +...  ....   ++.+  +|.+|+.....        ..|..+|+ ++++..+.+| ....  ....++.. +|
T Consensus       134 ~~-~-~~~~--~~~~---~i~~~~~g~l~v~~~~~--------~~i~~~~~-~g~~~~~~~~-~~~~--~~~~i~~~~~g  194 (299)
T 2z2n_A          134 YE-L-PNKG--SYPS---FITLGSDNALWFTENQN--------NAIGRITE-SGDITEFKIP-TPAS--GPVGITKGNDD  194 (299)
T ss_dssp             EE-C-SSTT--CCEE---EEEECTTSCEEEEETTT--------TEEEEECT-TCCEEEEECS-STTC--CEEEEEECTTS
T ss_pred             ec-C-CCCC--CCCc---eEEEcCCCCEEEEeCCC--------CEEEEEcC-CCcEEEeeCC-CCCC--cceeEEECCCC
Confidence            33 1 1100  0011   3333  57887765432        58999999 7777776555 3321  22234443 48


Q ss_pred             eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497          245 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       245 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v  324 (355)
                      +|++.....    ..+.++.. .    ..... ..++........+++..+|.+++.  ...++ .+..||+ +++++.+
T Consensus       195 ~l~v~~~~~----~~i~~~~~-~----g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~-~i~~~d~-~g~~~~~  260 (299)
T 2z2n_A          195 ALWFVEIIG----NKIGRITT-S----GEITE-FKIPTPNARPHAITAGAGIDLWFT--EWGAN-KIGRLTS-NNIIEEY  260 (299)
T ss_dssp             SEEEEETTT----TEEEEECT-T----CCEEE-EECSSTTCCEEEEEECSTTCEEEE--ETTTT-EEEEEET-TTEEEEE
T ss_pred             CEEEEccCC----ceEEEECC-C----CcEEE-EECCCCCCCceeEEECCCCCEEEe--ccCCc-eEEEECC-CCceEEE
Confidence            887776543    35555543 1    22322 223321112334556667888887  52334 5999999 5666665


Q ss_pred             EEe
Q 018497          325 GVH  327 (355)
Q Consensus       325 ~~~  327 (355)
                      ...
T Consensus       261 ~~~  263 (299)
T 2z2n_A          261 PIQ  263 (299)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=90.20  E-value=8.6  Score=33.31  Aligned_cols=119  Identities=13%  Similarity=0.167  Sum_probs=65.4

Q ss_pred             eCce-EEEEEeeeccCCCCCCcEEEEEEcC--CceeeEe----cCCCCCCCC-CCceEEEEE-CCe-EEEEEecCCCCcc
Q 018497          189 LNGS-VHWCARFSCYHDNSCPWLIVSFDFA--KEIFQTV----MMPYDLSTD-DADKYLNVF-DGY-LCVFATIPNNTFR  258 (355)
Q Consensus       189 ~~G~-lyw~~~~~~~~~~~~~~~Il~fD~~--~~~~~~i----~lP~~~~~~-~~~~~L~~~-~G~-L~~v~~~~~~~~~  258 (355)
                      -+|. +|......        ..|..||+.  +.++..+    ..| ..... .....++.. +|+ |++....+    .
T Consensus       196 pdg~~l~v~~~~~--------~~v~v~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~i~~spdG~~l~v~~~~~----~  262 (347)
T 3hfq_A          196 PDGQYAFLAGELS--------SQIASLKYDTQTGAFTQLGIVKTIP-ADYTAHNGAAAIRLSHDGHFLYVSNRGY----N  262 (347)
T ss_dssp             TTSSEEEEEETTT--------TEEEEEEEETTTTEEEEEEEEESSC-TTCCSCCEEEEEEECTTSCEEEEEEETT----T
T ss_pred             CCCCEEEEEeCCC--------CEEEEEEecCCCCceEEeeeeeecC-CCCCCCCcceeEEECCCCCEEEEEeCCC----C
Confidence            4676 55544332        456666655  5666443    233 22111 112223333 466 55555444    5


Q ss_pred             EEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCc-EEEEEEeeCCceEEEEE--eCCCCeEEEEEE
Q 018497          259 SYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFIRGECRHGGYGLLVY--NPHSDTFKCIGV  326 (355)
Q Consensus       259 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~~l~~y--d~~t~~~~~v~~  326 (355)
                      .+.+|.++..   ..+..+..++.......-+++..+|+ |++.  ...++ .+.+|  |.++++++.+.-
T Consensus       263 ~v~v~~~~~~---g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~--~~~~~-~v~v~~~d~~tg~l~~~~~  327 (347)
T 3hfq_A          263 TLAVFAVTAD---GHLTLIQQISTEGDFPRDFDLDPTEAFVVVV--NQNTD-NATLYARDLTSGKLSLLQK  327 (347)
T ss_dssp             EEEEEEECGG---GCEEEEEEEECSSSCCCEEEECTTSSEEEEE--ETTTT-EEEEEEECTTTCCEEEEEE
T ss_pred             EEEEEEECCC---CcEEEeEEEecCCCCcCeEEECCCCCEEEEE--EcCCC-cEEEEEEeCCCCeEEeccc
Confidence            8999999852   34666666655221234567778886 5555  42234 36666  889999988754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=90.04  E-value=8.9  Score=33.27  Aligned_cols=97  Identities=9%  Similarity=0.178  Sum_probs=60.3

Q ss_pred             cEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEEC----CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCC
Q 018497          209 WLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFD----GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKP  283 (355)
Q Consensus       209 ~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~----G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~  283 (355)
                      ..|..+|+..++...+ .+. ...   ..+.-+...    |.+.+....+    ..+.||.++.    ..|.....+...
T Consensus        33 g~i~iw~~~~~~~~~~~~~~-~h~---~~v~~~~~~~~~~~~~l~s~~~d----g~v~iwd~~~----~~~~~~~~~~~~  100 (379)
T 3jrp_A           33 KTIKIFEVEGETHKLIDTLT-GHE---GPVWRVDWAHPKFGTILASCSYD----GKVLIWKEEN----GRWSQIAVHAVH  100 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEEC-CCS---SCEEEEEECCGGGCSEEEEEETT----SCEEEEEEET----TEEEEEEEECCC
T ss_pred             CcEEEEecCCCcceeeeEec-CCC---CcEEEEEeCCCCCCCEEEEeccC----CEEEEEEcCC----CceeEeeeecCC
Confidence            4688899887666555 333 222   122222322    6666666655    4899999986    457776666543


Q ss_pred             CceeEeEEEeeC--CcEEEEEEeeCCceEEEEEeCCCCe
Q 018497          284 QRIWWPLGFTER--GKIFIRGECRHGGYGLLVYNPHSDT  320 (355)
Q Consensus       284 ~~~~~~~~~~~~--g~i~~~~~~~~~~~~l~~yd~~t~~  320 (355)
                      ......+.+..+  +..++.  ...++ .+.+||++++.
T Consensus       101 ~~~v~~~~~~~~~~~~~l~~--~~~d~-~i~v~d~~~~~  136 (379)
T 3jrp_A          101 SASVNSVQWAPHEYGPLLLV--ASSDG-KVSVVEFKENG  136 (379)
T ss_dssp             SSCEEEEEECCGGGCSEEEE--EETTS-EEEEEECCTTS
T ss_pred             CcceEEEEeCCCCCCCEEEE--ecCCC-cEEEEecCCCC
Confidence            323555666666  766666  43667 49999999874

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=89.70  E-value=8.7  Score=32.63  Aligned_cols=67  Identities=6%  Similarity=0.115  Sum_probs=41.2

Q ss_pred             CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCC---cEEEEEEeeCCceEEEEEeCCCC
Q 018497          244 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG---KIFIRGECRHGGYGLLVYNPHSD  319 (355)
Q Consensus       244 G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g---~i~~~~~~~~~~~~l~~yd~~t~  319 (355)
                      +++.+.+..+    ..+.||.++..  +..|.....+.........+.+..++   ..++.  ...++ .+.+||+++.
T Consensus       170 ~~~l~sgs~D----~~v~lwd~~~~--~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las--~s~D~-~v~iWd~~~~  239 (297)
T 2pm7_B          170 SRKFVTGGAD----NLVKIWKYNSD--AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS--VSQDR-TCIIWTQDNE  239 (297)
T ss_dssp             CCEEEEEETT----SCEEEEEEETT--TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTS-CEEEEEESST
T ss_pred             cceEEEEcCC----CcEEEEEEcCC--CceEEEEEEecCCCCceEEEEECCCCCCceEEEE--EECCC-cEEEEEeCCC
Confidence            4555555555    48999998752  24566666665333235556666653   55555  43566 4899998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=89.38  E-value=9.2  Score=32.50  Aligned_cols=106  Identities=14%  Similarity=0.138  Sum_probs=61.6

Q ss_pred             CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeE-ecCCCCCCCCCCceEEEEE-CCeEEEEEecCCCCccEEEEEEecc
Q 018497          190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKE  267 (355)
Q Consensus       190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~-i~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~  267 (355)
                      +|.....+...        ..|..||+.+.+... +..+ ..     ...+.-. +|++.++...+    ..+.+|.++.
T Consensus       194 ~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~-~~-----v~~~~~s~~~~~l~~~~~~----~~i~~~~~~~  255 (337)
T 1gxr_A          194 DGTKLWTGGLD--------NTVRSWDLREGRQLQQHDFT-SQ-----IFSLGYCPTGEWLAVGMES----SNVEVLHVNK  255 (337)
T ss_dssp             TSSEEEEEETT--------SEEEEEETTTTEEEEEEECS-SC-----EEEEEECTTSSEEEEEETT----SCEEEEETTS
T ss_pred             CCCEEEEEecC--------CcEEEEECCCCceEeeecCC-Cc-----eEEEEECCCCCEEEEEcCC----CcEEEEECCC
Confidence            56555554433        589999998776533 3333 21     1223322 46666666555    4899998875


Q ss_pred             CCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497          268 YGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC  323 (355)
Q Consensus       268 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~  323 (355)
                      .   .   . ..+.........+.+..+|+.++.  ...++ .+..||+++++...
T Consensus       256 ~---~---~-~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg-~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          256 P---D---K-YQLHLHESCVLSLKFAYCGKWFVS--TGKDN-LLNAWRTPYGASIF  301 (337)
T ss_dssp             S---C---E-EEECCCSSCEEEEEECTTSSEEEE--EETTS-EEEEEETTTCCEEE
T ss_pred             C---C---e-EEEcCCccceeEEEECCCCCEEEE--ecCCC-cEEEEECCCCeEEE
Confidence            2   1   1 122221113455666777877766  43566 59999999987653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=89.35  E-value=8.2  Score=31.89  Aligned_cols=188  Identities=13%  Similarity=0.070  Sum_probs=91.4

Q ss_pred             EEEeeeCceEEE-eecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcE------EEE-EEcCCCceeE
Q 018497           96 DVVGSCNGVLCF-CSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDF------KVV-YSLRSNSWKN  167 (355)
Q Consensus        96 ~~~~s~~GLl~l-~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~y------kvv-yss~t~~W~~  167 (355)
                      .+....+|-+.+ ...  ....+.++|+.++....++..... ...++.+|+.   +.-|      +|. |+..++.-+.
T Consensus        28 ~i~~~~~g~l~v~~~~--~~~~i~~~~~~~~~~~~~~~~~~~-~p~~i~~~~~---g~l~v~~~~~~i~~~d~~~~~~~~  101 (270)
T 1rwi_B           28 GVAVDSAGNVYVTSEG--MYGRVVKLATGSTGTTVLPFNGLY-QPQGLAVDGA---GTVYVTDFNNRVVTLAAGSNNQTV  101 (270)
T ss_dssp             EEEECTTCCEEEEECS--SSCEEEEECC-----EECCCCSCC-SCCCEEECTT---CCEEEEETTTEEEEECTTCSCCEE
T ss_pred             ceEECCCCCEEEEccC--CCCcEEEecCCCcccceEeeCCcC-CcceeEECCC---CCEEEEcCCCEEEEEeCCCceEee
Confidence            344445676666 532  467888999988776665432211 1245666654   3211      222 5555543332


Q ss_pred             eccCCCceeeeccccccceeEe--CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CC
Q 018497          168 IAYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DG  244 (355)
Q Consensus       168 ~~~~~p~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G  244 (355)
                      .. .....    ...   ++.+  +|.+|+.....        ..|..+|..+.........  ...  ....++.. +|
T Consensus       102 ~~-~~~~~----~p~---~i~~~~~g~l~v~~~~~--------~~i~~~~~~~~~~~~~~~~--~~~--~p~~i~~~~~g  161 (270)
T 1rwi_B          102 LP-FDGLN----YPE---GLAVDTQGAVYVADRGN--------NRVVKLAAGSKTQTVLPFT--GLN--DPDGVAVDNSG  161 (270)
T ss_dssp             CC-CCSCS----SEE---EEEECTTCCEEEEEGGG--------TEEEEECTTCCSCEECCCC--SCC--SCCCEEECTTC
T ss_pred             ee-cCCcC----CCc---ceEECCCCCEEEEECCC--------CEEEEEECCCceeEeeccc--cCC--CceeEEEeCCC
Confidence            22 11000    011   3333  68888765543        5788898776554433211  111  11223433 58


Q ss_pred             eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497          245 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC  323 (355)
Q Consensus       245 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~  323 (355)
                      +|++.....    ..+.+|..+.   ..   .. ....... ...-+++..+|.+++.  ...++ .+..||++++....
T Consensus       162 ~l~v~~~~~----~~i~~~~~~~---~~---~~-~~~~~~~~~p~~i~~d~~g~l~v~--~~~~~-~v~~~~~~~~~~~~  227 (270)
T 1rwi_B          162 NVYVTDTDN----NRVVKLEAES---NN---QV-VLPFTDITAPWGIAVDEAGTVYVT--EHNTN-QVVKLLAGSTTSTV  227 (270)
T ss_dssp             CEEEEEGGG----TEEEEECTTT---CC---EE-ECCCSSCCSEEEEEECTTCCEEEE--ETTTS-CEEEECTTCSCCEE
T ss_pred             CEEEEECCC----CEEEEEecCC---Cc---eE-eecccCCCCceEEEECCCCCEEEE--ECCCC-cEEEEcCCCCccee
Confidence            888776543    3665555432   11   11 1111111 2334556667788888  52344 59999998876544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=89.15  E-value=4.7  Score=36.43  Aligned_cols=123  Identities=9%  Similarity=0.051  Sum_probs=70.8

Q ss_pred             CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCC-C-------CCCCCCCceEEEEE--CCeEEEEEecCC---C
Q 018497          190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMP-Y-------DLSTDDADKYLNVF--DGYLCVFATIPN---N  255 (355)
Q Consensus       190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP-~-------~~~~~~~~~~L~~~--~G~L~~v~~~~~---~  255 (355)
                      +|.++|....+         .+.++|+.++.-..+ +.. +       .....+.. .++..  +++||+......   .
T Consensus       237 dG~~~~vs~~g---------~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q-~~a~~~~~~~lyV~~~~~~~~~h  306 (386)
T 3sjl_D          237 AGRLVWPTYTG---------KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ-QVAYHRALDRIYLLVDQRDEWRH  306 (386)
T ss_dssp             TTEEEEEBTTS---------EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS-CEEEETTTTEEEEEEEECCTTCT
T ss_pred             CCcEEEEeCCC---------EEEEEECCCCcceeecceeccccccccccccCCCcc-eeeECCCCCeEEEEecccccccc
Confidence            78888877654         799999987764433 110 0       00011111 12333  368888765321   0


Q ss_pred             CccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCc-EEEEEEeeCCceEEEEEeCCCCeE-EEEEEecC
Q 018497          256 TFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFIRGECRHGGYGLLVYNPHSDTF-KCIGVHLP  329 (355)
Q Consensus       256 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~~l~~yd~~t~~~-~~v~~~~~  329 (355)
                      ....-+||+++-    ..+..+.+|+... ...-+++..+|+ .++.. ...++ .+.+||..|++. +.+...+.
T Consensus       307 k~~~~~V~viD~----~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~t-n~~~~-~VsViD~~t~k~~~~i~~~~~  375 (386)
T 3sjl_D          307 KTASRFVVVLDA----KTGERLAKFEMGH-EIDSINVSQDEKPLLYAL-STGDK-TLYIHDAESGEELRSVNQLGH  375 (386)
T ss_dssp             TSCEEEEEEEET----TTCCEEEEEEEEE-EECEEEECSSSSCEEEEE-ETTTT-EEEEEETTTCCEEEEECCCCS
T ss_pred             CCCCCEEEEEEC----CCCeEEEEEECCC-CcceEEECCCCCeEEEEE-cCCCC-eEEEEECCCCcEEEEecCCCC
Confidence            113567999986    4567777776653 233477778875 44441 42345 599999999886 44554443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=88.79  E-value=5.2  Score=35.89  Aligned_cols=113  Identities=7%  Similarity=-0.133  Sum_probs=62.1

Q ss_pred             CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEE--CCeEEEEEecCCCCccEEEEEEec
Q 018497          190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF--DGYLCVFATIPNNTFRSYELWVMK  266 (355)
Q Consensus       190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~--~G~L~~v~~~~~~~~~~l~iW~l~  266 (355)
                      +|.++......        ..|..+|+.+.+.... +.+ ..........-+..  +|++++....+    ..+.+|.++
T Consensus       133 ~~~~~~~~~~~--------~~i~~~d~~~g~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~s~~~d----~~v~~~d~~  199 (433)
T 3bws_A          133 NTRLAIPLLED--------EGMDVLDINSGQTVRLSPPE-KYKKKLGFVETISIPEHNELWVSQMQA----NAVHVFDLK  199 (433)
T ss_dssp             SSEEEEEBTTS--------SSEEEEETTTCCEEEECCCH-HHHTTCCEEEEEEEGGGTEEEEEEGGG----TEEEEEETT
T ss_pred             CCeEEEEeCCC--------CeEEEEECCCCeEeeecCcc-cccccCCceeEEEEcCCCEEEEEECCC----CEEEEEECC
Confidence            56666655433        4699999998776543 221 11011112222222  47777766655    489999886


Q ss_pred             cCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497          267 EYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC  323 (355)
Q Consensus       267 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~  323 (355)
                      .    .  ....++.........+++..+|..++.. ...++ .+..||+++++...
T Consensus       200 ~----~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~i~~~d~~~~~~~~  248 (433)
T 3bws_A          200 T----L--AYKATVDLTGKWSKILLYDPIRDLVYCS-NWISE-DISVIDRKTKLEIR  248 (433)
T ss_dssp             T----C--CEEEEEECSSSSEEEEEEETTTTEEEEE-ETTTT-EEEEEETTTTEEEE
T ss_pred             C----c--eEEEEEcCCCCCeeEEEEcCCCCEEEEE-ecCCC-cEEEEECCCCcEEE
Confidence            4    1  2223333222134456667777555441 32355 59999999887643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=88.74  E-value=10  Score=32.30  Aligned_cols=101  Identities=8%  Similarity=-0.033  Sum_probs=53.0

Q ss_pred             cEEEEEEcCCceeeEecCCCCCCCCCCceEEEEEC-CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCcee
Q 018497          209 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFD-GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIW  287 (355)
Q Consensus       209 ~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~-G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~  287 (355)
                      ..+..+|+....-...... ..........+.... +.+.+....+    ..+.+|.++.      ......+.......
T Consensus       150 ~~~~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~~d----~~i~i~d~~~------~~~~~~~~~h~~~v  218 (340)
T 4aow_A          150 KTIKLWNTLGVCKYTVQDE-SHSEWVSCVRFSPNSSNPIIVSCGWD----KLVKVWNLAN------CKLKTNHIGHTGYL  218 (340)
T ss_dssp             SCEEEECTTSCEEEEECSS-SCSSCEEEEEECSCSSSCEEEEEETT----SCEEEEETTT------TEEEEEECCCSSCE
T ss_pred             CeEEEEEeCCCceEEEEec-cccCcccceEEccCCCCcEEEEEcCC----CEEEEEECCC------CceeeEecCCCCcE
Confidence            3577788776655444333 222110111111112 2344444444    4889998764      23333333222134


Q ss_pred             EeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497          288 WPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC  323 (355)
Q Consensus       288 ~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~  323 (355)
                      ..+++..+|.+++.  ...++ .+.+||+++.+...
T Consensus       219 ~~~~~s~~~~~l~s--~s~Dg-~i~iwd~~~~~~~~  251 (340)
T 4aow_A          219 NTVTVSPDGSLCAS--GGKDG-QAMLWDLNEGKHLY  251 (340)
T ss_dssp             EEEEECTTSSEEEE--EETTC-EEEEEETTTTEEEE
T ss_pred             EEEEECCCCCEEEE--EeCCC-eEEEEEeccCceee
Confidence            45666777877777  43666 49999999877543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=88.65  E-value=11  Score=32.37  Aligned_cols=106  Identities=8%  Similarity=0.146  Sum_probs=54.9

Q ss_pred             cEEEEEEcCC-ceeeEe-cCCCCCCCCCCceEEEEE-CC----eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec
Q 018497          209 WLIVSFDFAK-EIFQTV-MMPYDLSTDDADKYLNVF-DG----YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE  281 (355)
Q Consensus       209 ~~Il~fD~~~-~~~~~i-~lP~~~~~~~~~~~L~~~-~G----~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~  281 (355)
                      ..|..+|+.+ +.|..+ .+. ....  ....+.-. +|    .+.+....+    ..+.||.++... ...|.....-.
T Consensus       189 ~~v~lWd~~~~~~~~~~~~l~-~h~~--~V~~v~~sp~~~~~~~~las~s~D----~~v~iw~~~~~~-~~~~~~~~~~~  260 (316)
T 3bg1_A          189 NLIKLWKEEEDGQWKEEQKLE-AHSD--WVRDVAWAPSIGLPTSTIASCSQD----GRVFIWTCDDAS-SNTWSPKLLHK  260 (316)
T ss_dssp             SBCCEEEECTTSCEEEEECCB-CCSS--CEEEEECCCCSSCSCCEEEEEETT----CEEEEEECSSTT-CCCCBCCEEEE
T ss_pred             CeEEEEEeCCCCccceeeecc-cCCC--ceEEEEecCCCCCCCceEEEEcCC----CeEEEEEccCcc-ccchhhhhhhc
Confidence            4677788864 345444 333 2221  11122211 12    455555554    499999987632 12343211111


Q ss_pred             CCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCC-CCeEEEEEE
Q 018497          282 KPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPH-SDTFKCIGV  326 (355)
Q Consensus       282 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~-t~~~~~v~~  326 (355)
                      ... ....+++..+|.+++.  ...++ .+.+||.. .+.|+.+..
T Consensus       261 ~~~-~v~~v~~sp~g~~las--~~~D~-~v~lw~~~~~g~~~~~~~  302 (316)
T 3bg1_A          261 FND-VVWHVSWSITANILAV--SGGDN-KVTLWKESVDGQWVCISD  302 (316)
T ss_dssp             CSS-CEEEEEECTTTCCEEE--EESSS-CEEEEEECTTSCEEEEEE
T ss_pred             CCC-cEEEEEEcCCCCEEEE--EcCCC-eEEEEEECCCCcEEEeee
Confidence            111 2445667778876666  43666 48888875 456777644

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=88.41  E-value=11  Score=32.35  Aligned_cols=66  Identities=9%  Similarity=0.112  Sum_probs=39.8

Q ss_pred             CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCC--CceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCC
Q 018497          244 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKP--QRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHS  318 (355)
Q Consensus       244 G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~--~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t  318 (355)
                      |++.+++..+    ..+.+|.++...  ........+...  ......+.+..+|..++.  ...++ .+.+||+.+
T Consensus       299 ~~~l~~~~~d----g~i~vwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg-~i~iwd~~~  366 (366)
T 3k26_A          299 QKMLALGNQV----GKLYVWDLEVED--PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIA--VCDDA-SIWRWDRLR  366 (366)
T ss_dssp             SSEEEEECTT----SCEEEEECCSSS--GGGCEEEEECCTTCCSCEEEEEECTTSSEEEE--EETTS-EEEEEEC--
T ss_pred             CcEEEEEecC----CcEEEEECCCCC--CccccceEEcccccCCceEEEEeCCCCCeEEE--EeCCC-EEEEEEecC
Confidence            6666666554    489999998632  222244444433  113555667778877777  43677 499999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=88.25  E-value=13  Score=32.78  Aligned_cols=190  Identities=9%  Similarity=0.044  Sum_probs=97.3

Q ss_pred             eeeCceEE-EeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcEEE--------EEEcCCCceeEec
Q 018497           99 GSCNGVLC-FCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKV--------VYSLRSNSWKNIA  169 (355)
Q Consensus        99 ~s~~GLl~-l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykv--------vyss~t~~W~~~~  169 (355)
                      -|-+|-++ +... +.++.+.|||+.+++.+........  ...+.|.|.   + .+-+        +++..++.-....
T Consensus       141 fSpDg~~la~as~-~~d~~i~iwd~~~~~~~~~~~~~~~--V~~v~fspd---g-~~l~s~s~~~~~~~~~~~~~~~~~~  213 (365)
T 4h5i_A          141 ISREGTVAAIASS-KVPAIMRIIDPSDLTEKFEIETRGE--VKDLHFSTD---G-KVVAYITGSSLEVISTVTGSCIARK  213 (365)
T ss_dssp             ECTTSSCEEEEES-CSSCEEEEEETTTTEEEEEEECSSC--CCEEEECTT---S-SEEEEECSSCEEEEETTTCCEEEEE
T ss_pred             EcCCCCEEEEEEC-CCCCEEEEeECCCCcEEEEeCCCCc--eEEEEEccC---C-ceEEeccceeEEEEEeccCcceeee
Confidence            34466543 3321 2567899999999887765432211  234555553   2 2111        1444444332211


Q ss_pred             cCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe---cCCCCCCCCCCceEEEEE-CCe
Q 018497          170 YGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV---MMPYDLSTDDADKYLNVF-DGY  245 (355)
Q Consensus       170 ~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i---~lP~~~~~~~~~~~L~~~-~G~  245 (355)
                      ...........    ....-+|.....+...    ......+..+|.........   .+. ....  .-..+... +|+
T Consensus       214 ~~~~~~~~v~~----v~fspdg~~l~~~s~d----~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~--~V~~~~~Spdg~  282 (365)
T 4h5i_A          214 TDFDKNWSLSK----INFIADDTVLIAASLK----KGKGIVLTKISIKSGNTSVLRSKQVT-NRFK--GITSMDVDMKGE  282 (365)
T ss_dssp             CCCCTTEEEEE----EEEEETTEEEEEEEES----SSCCEEEEEEEEETTEEEEEEEEEEE-SSCS--CEEEEEECTTSC
T ss_pred             ecCCCCCCEEE----EEEcCCCCEEEEEecC----CcceeEEeecccccceecceeeeeec-CCCC--CeEeEEECCCCC
Confidence            00111111000    0223466665555433    22334577777776655443   222 2111  11223333 477


Q ss_pred             EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCC
Q 018497          246 LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSD  319 (355)
Q Consensus       246 L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~  319 (355)
                      +.+.+..+    ..+.||-++.      ...+.++...+. ....+++..+|+.++.  ...|+ ++.++|+.++
T Consensus       283 ~lasgs~D----~~V~iwd~~~------~~~~~~~~~gH~~~V~~v~fSpdg~~laS--~S~D~-tvrvw~ip~~  344 (365)
T 4h5i_A          283 LAVLASND----NSIALVKLKD------LSMSKIFKQAHSFAITEVTISPDSTYVAS--VSAAN-TIHIIKLPLN  344 (365)
T ss_dssp             EEEEEETT----SCEEEEETTT------TEEEEEETTSSSSCEEEEEECTTSCEEEE--EETTS-EEEEEECCTT
T ss_pred             ceEEEcCC----CEEEEEECCC------CcEEEEecCcccCCEEEEEECCCCCEEEE--EeCCC-eEEEEEcCCC
Confidence            76666665    4899998764      244555533222 4566888889988887  43677 5999998654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=88.23  E-value=8.7  Score=32.63  Aligned_cols=102  Identities=16%  Similarity=0.227  Sum_probs=60.3

Q ss_pred             cEEEEEEcCCc--eeeEe-cCCCCCCCCCCceEEEEE---CCeEEEEEecCCCCccEEEEEEeccCC---CCCCeEEEEE
Q 018497          209 WLIVSFDFAKE--IFQTV-MMPYDLSTDDADKYLNVF---DGYLCVFATIPNNTFRSYELWVMKEYG---LTESWTKLYT  279 (355)
Q Consensus       209 ~~Il~fD~~~~--~~~~i-~lP~~~~~~~~~~~L~~~---~G~L~~v~~~~~~~~~~l~iW~l~~~~---~~~~W~~~~~  279 (355)
                      ..|..+|+.++  .+..+ .+. ....  ....+.-.   +|.+.+....++    .+.||.++...   ....|.....
T Consensus        33 g~i~iw~~~~~~~~~~~~~~~~-~~~~--~v~~~~~~~~~d~~~l~s~~~dg----~v~vwd~~~~~~~~~~~~~~~~~~  105 (351)
T 3f3f_A           33 QHIKVFKLDKDTSNWELSDSWR-AHDS--SIVAIDWASPEYGRIIASASYDK----TVKLWEEDPDQEECSGRRWNKLCT  105 (351)
T ss_dssp             SEEEEEEECSSSCCEEEEEEEE-CCSS--CEEEEEECCGGGCSEEEEEETTS----CEEEEEECTTSCTTSSCSEEEEEE
T ss_pred             CeEEEEECCCCCCcceecceec-cCCC--cEEEEEEcCCCCCCEEEEEcCCC----eEEEEecCCCcccccccCcceeee
Confidence            47888898754  22332 222 1111  12233333   377767666654    89999998632   2346777777


Q ss_pred             ecCCCceeEeEEEeeC--CcEEEEEEeeCCceEEEEEeCCCCe
Q 018497          280 IEKPQRIWWPLGFTER--GKIFIRGECRHGGYGLLVYNPHSDT  320 (355)
Q Consensus       280 i~~~~~~~~~~~~~~~--g~i~~~~~~~~~~~~l~~yd~~t~~  320 (355)
                      +.........+.+..+  +..++.  ...++ .+..||+++++
T Consensus       106 ~~~~~~~v~~~~~~~~~~~~~l~~--~~~dg-~v~iwd~~~~~  145 (351)
T 3f3f_A          106 LNDSKGSLYSVKFAPAHLGLKLAC--LGNDG-ILRLYDALEPS  145 (351)
T ss_dssp             ECCCSSCEEEEEECCGGGCSEEEE--EETTC-EEEEEECSSTT
T ss_pred             ecccCCceeEEEEcCCCCCcEEEE--ecCCC-cEEEecCCChH
Confidence            7544333555666666  766666  43667 59999998765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=88.17  E-value=10  Score=32.50  Aligned_cols=117  Identities=14%  Similarity=0.138  Sum_probs=63.1

Q ss_pred             eCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CCeEEEEEecCCCCccEEEEEEecc
Q 018497          189 LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKE  267 (355)
Q Consensus       189 ~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~  267 (355)
                      -+|.+||.....        ..|..+|+.+.++..+..+ ...   ....++.. +|+|++...........+  +.++.
T Consensus        54 ~~g~l~~~~~~~--------~~i~~~d~~~~~~~~~~~~-~~~---~~~~i~~~~dg~l~v~~~~~~~~~~~i--~~~d~  119 (333)
T 2dg1_A           54 RQGQLFLLDVFE--------GNIFKINPETKEIKRPFVS-HKA---NPAAIKIHKDGRLFVCYLGDFKSTGGI--FAATE  119 (333)
T ss_dssp             TTSCEEEEETTT--------CEEEEECTTTCCEEEEEEC-SSS---SEEEEEECTTSCEEEEECTTSSSCCEE--EEECT
T ss_pred             CCCCEEEEECCC--------CEEEEEeCCCCcEEEEeeC-CCC---CcceEEECCCCcEEEEeCCCCCCCceE--EEEeC
Confidence            378888876543        5899999998888765322 111   22334443 588888765431111244  44443


Q ss_pred             CCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeC------CceEEEEEeCCCCeEEEE
Q 018497          268 YGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH------GGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       268 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~------~~~~l~~yd~~t~~~~~v  324 (355)
                      .+  ..-.....-.........+.+..+|.+++.  ...      .. .++.+|+++++++.+
T Consensus       120 ~~--~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~~~~~~~-~l~~~~~~~~~~~~~  177 (333)
T 2dg1_A          120 NG--DNLQDIIEDLSTAYCIDDMVFDSKGGFYFT--DFRGYSTNPLG-GVYYVSPDFRTVTPI  177 (333)
T ss_dssp             TS--CSCEEEECSSSSCCCEEEEEECTTSCEEEE--ECCCBTTBCCE-EEEEECTTSCCEEEE
T ss_pred             CC--CEEEEEEccCccCCcccceEECCCCCEEEE--eccccccCCCc-eEEEEeCCCCEEEEe
Confidence            21  111111110111112334566677888887  411      23 599999998777654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=87.26  E-value=18  Score=35.57  Aligned_cols=98  Identities=9%  Similarity=0.151  Sum_probs=61.4

Q ss_pred             cEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEE-C--CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC
Q 018497          209 WLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF-D--GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ  284 (355)
Q Consensus       209 ~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~-~--G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~  284 (355)
                      ..|..+|+.+++...+ .+. ....  ....+.-. +  |.+.+.+..++    .+.+|.++.    ..|.....+....
T Consensus        31 g~I~vwd~~~~~~~~~~~l~-~h~~--~V~~l~~s~~~~~~~l~s~s~Dg----~I~vwd~~~----~~~~~~~~~~~h~   99 (753)
T 3jro_A           31 KTIKIFEVEGETHKLIDTLT-GHEG--PVWRVDWAHPKFGTILASCSYDG----KVLIWKEEN----GRWSQIAVHAVHS   99 (753)
T ss_dssp             TEEEEEEEETTEEEEEEEEC-CCSS--CEEEEEECCTTSCSEEEEEETTS----CEEEEEEET----TEEEEEEEECCCS
T ss_pred             CcEEEEecCCCCCccceecc-CCcC--ceEEEEecCCCCCCEEEEEeCCC----eEEEEECCC----CcccccccccCCC
Confidence            5788999887776655 333 2221  11223322 2  66666666654    899999885    4576666665433


Q ss_pred             ceeEeEEEeeC--CcEEEEEEeeCCceEEEEEeCCCCe
Q 018497          285 RIWWPLGFTER--GKIFIRGECRHGGYGLLVYNPHSDT  320 (355)
Q Consensus       285 ~~~~~~~~~~~--g~i~~~~~~~~~~~~l~~yd~~t~~  320 (355)
                      .....+.+..+  |.+++.  ...++ .+.+||++++.
T Consensus       100 ~~V~~v~~sp~~~~~~l~s--gs~dg-~I~vwdl~~~~  134 (753)
T 3jro_A          100 ASVNSVQWAPHEYGPLLLV--ASSDG-KVSVVEFKENG  134 (753)
T ss_dssp             SCEEEEEECCGGGCSEEEE--EETTS-EEEEEECCSSS
T ss_pred             CCeEEEEECCCCCCCEEEE--EeCCC-cEEEEEeecCC
Confidence            24555666666  767776  43667 59999998873

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=86.38  E-value=13  Score=30.88  Aligned_cols=187  Identities=8%  Similarity=0.010  Sum_probs=94.7

Q ss_pred             eeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcEEEE---------EEcCCCceeEec
Q 018497           99 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVV---------YSLRSNSWKNIA  169 (355)
Q Consensus        99 ~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykvv---------yss~t~~W~~~~  169 (355)
                      +..+|.|...+.  ...++.++++.++....+-... .....++.+|+.   .+...+.         ++.....-+.+.
T Consensus        44 d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~-~~~p~~ia~d~~---~~~lyv~d~~~~~I~~~~~~g~~~~~~~  117 (267)
T 1npe_A           44 DCVDKVVYWTDI--SEPSIGRASLHGGEPTTIIRQD-LGSPEGIALDHL---GRTIFWTDSQLDRIEVAKMDGTQRRVLF  117 (267)
T ss_dssp             ETTTTEEEEEET--TTTEEEEEESSSCCCEEEECTT-CCCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             ecCCCEEEEEEC--CCCEEEEEecCCCCcEEEEECC-CCCccEEEEEec---CCeEEEEECCCCEEEEEEcCCCCEEEEE
Confidence            334677777764  5678899998876544332111 112256777765   3332222         555433222221


Q ss_pred             cCCCceeeeccccccceeEe---CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEE--C
Q 018497          170 YGFPRSIEINRSHINSSVFL---NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF--D  243 (355)
Q Consensus       170 ~~~p~~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~--~  243 (355)
                       ...  .  ....   ++.+   +|.+||.....      ....|..++++....+.+ ..+   .  .....++..  +
T Consensus       118 -~~~--~--~~P~---~i~vd~~~g~lyv~~~~~------~~~~I~~~~~dg~~~~~~~~~~---~--~~P~gia~d~~~  178 (267)
T 1npe_A          118 -DTG--L--VNPR---GIVTDPVRGNLYWTDWNR------DNPKIETSHMDGTNRRILAQDN---L--GLPNGLTFDAFS  178 (267)
T ss_dssp             -CSS--C--SSEE---EEEEETTTTEEEEEECCS------SSCEEEEEETTSCCCEEEECTT---C--SCEEEEEEETTT
T ss_pred             -ECC--C--CCcc---EEEEeeCCCEEEEEECCC------CCcEEEEEecCCCCcEEEEECC---C--CCCcEEEEcCCC
Confidence             111  0  1111   4443   68999987541      125788999876554444 222   1  112234433  4


Q ss_pred             CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEee-CCcEEEEEEeeCCceEEEEEeCCCCeE-
Q 018497          244 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTE-RGKIFIRGECRHGGYGLLVYNPHSDTF-  321 (355)
Q Consensus       244 G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~~~~~~~~~l~~yd~~t~~~-  321 (355)
                      ++|+++....+    .+.  +++-.+  .  .....+...   ..|.++.. ++.+|+.  ....+ .+..+|+++++. 
T Consensus       179 ~~lyv~d~~~~----~I~--~~~~~g--~--~~~~~~~~~---~~P~gi~~d~~~lyva--~~~~~-~v~~~d~~~g~~~  242 (267)
T 1npe_A          179 SQLCWVDAGTH----RAE--CLNPAQ--P--GRRKVLEGL---QYPFAVTSYGKNLYYT--DWKTN-SVIAMDLAISKEM  242 (267)
T ss_dssp             TEEEEEETTTT----EEE--EEETTE--E--EEEEEEECC---CSEEEEEEETTEEEEE--ETTTT-EEEEEETTTTEEE
T ss_pred             CEEEEEECCCC----EEE--EEecCC--C--ceEEEecCC---CCceEEEEeCCEEEEE--ECCCC-eEEEEeCCCCCce
Confidence            68888776543    444  444321  1  111122211   23444433 4578877  52334 599999998775 


Q ss_pred             EEEEE
Q 018497          322 KCIGV  326 (355)
Q Consensus       322 ~~v~~  326 (355)
                      +.+..
T Consensus       243 ~~i~~  247 (267)
T 1npe_A          243 DTFHP  247 (267)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            44543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=85.27  E-value=21  Score=32.20  Aligned_cols=195  Identities=12%  Similarity=0.043  Sum_probs=99.1

Q ss_pred             EEEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCc---------EEEE-EEcCCCc-
Q 018497           96 DVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDD---------FKVV-YSLRSNS-  164 (355)
Q Consensus        96 ~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~---------ykvv-yss~t~~-  164 (355)
                      .+.-..+|-|.+.+.  ...++.++|+.+++...+.......  . +.+++.   .+.         -+|. ++..++. 
T Consensus       135 ~la~d~~g~lyv~d~--~~~~I~~id~~~g~~~~~~~~~~~~--~-ia~~~~---g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          135 GIAAVGNNTVLAYQR--DDPRVRLISVDDNKVTTVHPGFKGG--K-PAVTKD---KQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             EEEECSTTEEEEEET--TTTEEEEEETTTTEEEEEEETCCBC--B-CEECTT---SSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             EEEEeCCCCEEEEec--CCCcEEEEECCCCEEEEeeccCCCC--c-eeEecC---CCcEEEEecCCCceEEEEEcCCCce
Confidence            444446777777763  5678999999998877664432211  1 333433   211         1333 5554331 


Q ss_pred             eeEeccCCCc-eeeeccccccceeEe---CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCc-e-
Q 018497          165 WKNIAYGFPR-SIEINRSHINSSVFL---NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDAD-K-  237 (355)
Q Consensus       165 W~~~~~~~p~-~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~-~-  237 (355)
                      .+.+. .... ..  ....   ++.+   +|.||+... .        ..|..+|+.+.....+ ..+ ........ . 
T Consensus       207 ~~~~g-~~~~~~~--~~p~---~iav~p~~g~lyv~d~-~--------~~I~~~d~~~~~~~~~~~~~-~~g~~~~~P~~  270 (409)
T 3hrp_A          207 PTRIG-QLGSTFS--GKIG---AVALDETEEWLYFVDS-N--------KNFGRFNVKTQEVTLIKQLE-LSGSLGTNPGP  270 (409)
T ss_dssp             EEEEE-ECCTTSC--SCCC---BCEECTTSSEEEEECT-T--------CEEEEEETTTCCEEEEEECC-CCSCCCCSSCC
T ss_pred             eEEee-eccchhc--CCcE---EEEEeCCCCeEEEEEC-C--------CcEEEEECCCCCEEEEeccc-ccCCCCCCccc
Confidence            22331 1111 11  1111   3332   789999432 2        4899999998776655 222 11111122 2 


Q ss_pred             EEEEE--CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec-C----------CCc-eeEeEEEeeCCcEEEEEE
Q 018497          238 YLNVF--DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE-K----------PQR-IWWPLGFTERGKIFIRGE  303 (355)
Q Consensus       238 ~L~~~--~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~----------~~~-~~~~~~~~~~g~i~~~~~  303 (355)
                      .++..  +|.|++.....    ..  |++++..+   .-.....-. .          ..+ ...-+++..+|.||+.  
T Consensus       271 ~ia~~p~~g~lyv~d~~~----~~--I~~~~~~g---~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva--  339 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQNL----SS--VYKITPDG---ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV--  339 (409)
T ss_dssp             EEEEETTTTEEEEEETTT----TE--EEEECTTC---CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE--
T ss_pred             cEEEeCCCCEEEEEeCCC----CE--EEEEecCC---CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE--
Confidence            45554  58888876543    24  44444322   111111100 0          001 1233556677899988  


Q ss_pred             eeCCceEEEEEeCCCCeEEEEE
Q 018497          304 CRHGGYGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       304 ~~~~~~~l~~yd~~t~~~~~v~  325 (355)
                      .......+..+|+.++++..+.
T Consensus       340 d~~~~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          340 DGFKGYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             ETTTTCEEEEEETTTTEEEEEE
T ss_pred             eCCCCCEEEEEECCCCEEEEEe
Confidence            6303336999998888877664

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=85.04  E-value=1.7  Score=38.43  Aligned_cols=137  Identities=9%  Similarity=0.090  Sum_probs=64.7

Q ss_pred             EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCce-eeEe-cCCCCCCCCCC
Q 018497          158 YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI-FQTV-MMPYDLSTDDA  235 (355)
Q Consensus       158 yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~-~~~i-~lP~~~~~~~~  235 (355)
                      |+..++.|+.+. .+.........-   ...-+|.+...+..+        ..|..+|+.++. +..+ .+. ....  .
T Consensus        38 w~~~~~~~~~~~-~~~~h~~~v~~~---~~s~~~~~l~s~s~d--------~~v~vwd~~~~~~~~~~~~~~-~~~~--~  102 (377)
T 3dwl_C           38 YEQDGNGWKHAR-TFSDHDKIVTCV---DWAPKSNRIVTCSQD--------RNAYVYEKRPDGTWKQTLVLL-RLNR--A  102 (377)
T ss_dssp             EEEETTEEEECC-CBCCCSSCEEEE---EECTTTCCEEEEETT--------SSEEEC------CCCCEEECC-CCSS--C
T ss_pred             EEccCCceEEEE-EEecCCceEEEE---EEeCCCCEEEEEeCC--------CeEEEEEcCCCCceeeeeEec-ccCC--c
Confidence            777777777665 332111100000   111245444333322        468889988776 3332 222 2111  1


Q ss_pred             ceEEEEE-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecC-CCceeEeEEEeeCCcEEEEEEeeCCceEEEE
Q 018497          236 DKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEK-PQRIWWPLGFTERGKIFIRGECRHGGYGLLV  313 (355)
Q Consensus       236 ~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~  313 (355)
                      ...+.-. +|++.++...+    ..+.+|.++..   ..|.....+.. .......+.+..+|..++.  ...++ .+..
T Consensus       103 v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~--~~~d~-~i~i  172 (377)
T 3dwl_C          103 ATFVRWSPNEDKFAVGSGA----RVISVCYFEQE---NDWWVSKHLKRPLRSTILSLDWHPNNVLLAA--GCADR-KAYV  172 (377)
T ss_dssp             EEEEECCTTSSCCEEEESS----SCEEECCC--------CCCCEEECSSCCSCEEEEEECTTSSEEEE--EESSS-CEEE
T ss_pred             eEEEEECCCCCEEEEEecC----CeEEEEEECCc---ccceeeeEeecccCCCeEEEEEcCCCCEEEE--EeCCC-EEEE
Confidence            1222222 46666666655    48999998762   34665556654 2223555666777776666  43566 4999


Q ss_pred             EeCCCC
Q 018497          314 YNPHSD  319 (355)
Q Consensus       314 yd~~t~  319 (355)
                      ||++++
T Consensus       173 wd~~~~  178 (377)
T 3dwl_C          173 LSAYVR  178 (377)
T ss_dssp             EEECCS
T ss_pred             EEEEec
Confidence            998643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=85.03  E-value=15  Score=30.27  Aligned_cols=195  Identities=10%  Similarity=0.025  Sum_probs=93.1

Q ss_pred             EEeeeCceEEEeecCCCCceEEEEcCCc-ccEEecCCCCCCCce-----------eEEEEecCCCCCCcEEEE-EEcCCC
Q 018497           97 VVGSCNGVLCFCSNGSDRSLIYLWNPLI-KKYMTLPRPSLNPRY-----------LGFGVNSVSGHLDDFKVV-YSLRSN  163 (355)
Q Consensus        97 ~~~s~~GLl~l~~~~~~~~~~~V~NP~T-~~~~~LP~~~~~~~~-----------~~~g~d~~~~~~~~ykvv-yss~t~  163 (355)
                      +.-+-+|-.++..   ....++++|..+ ++...+.........           +.++....   .+..+|. ++..++
T Consensus        47 ~~~spdg~~l~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~---~~~~~l~~~~~~~~  120 (297)
T 2ojh_A           47 PNWSPDGKYLLLN---SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVE---FGKSAIYLLPSTGG  120 (297)
T ss_dssp             EEECTTSSEEEEE---ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTT---TSSCEEEEEETTCC
T ss_pred             eEECCCCCEEEEE---cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCC---CCcceEEEEECCCC
Confidence            3344456544444   256899999999 888777644321111           22222111   2233443 555555


Q ss_pred             ceeEeccCCCceeeeccccccceeEeCce-EEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEE-
Q 018497          164 SWKNIAYGFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNV-  241 (355)
Q Consensus       164 ~W~~~~~~~p~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~-  241 (355)
                      .-+.+. ........       ...-+|. +++.....      ....|..+|..+.....+.-. ..    ....+.- 
T Consensus       121 ~~~~~~-~~~~~~~~-------~~spdg~~l~~~~~~~------~~~~l~~~~~~~~~~~~~~~~-~~----~~~~~~~s  181 (297)
T 2ojh_A          121 TPRLMT-KNLPSYWH-------GWSPDGKSFTYCGIRD------QVFDIYSMDIDSGVETRLTHG-EG----RNDGPDYS  181 (297)
T ss_dssp             CCEECC-SSSSEEEE-------EECTTSSEEEEEEEET------TEEEEEEEETTTCCEEECCCS-SS----CEEEEEEC
T ss_pred             ceEEee-cCCCccce-------EECCCCCEEEEEECCC------CceEEEEEECCCCcceEcccC-CC----ccccceEC
Confidence            544443 11110000       1222554 34333332      123566677776666554221 11    1122222 


Q ss_pred             ECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCC---------ceEEE
Q 018497          242 FDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG---------GYGLL  312 (355)
Q Consensus       242 ~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~---------~~~l~  312 (355)
                      -+|+..++.....   ....||.++..+  ..   ...+.........+.+..+|+.++.. ...+         ...++
T Consensus       182 ~dg~~l~~~~~~~---~~~~i~~~~~~~--~~---~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~~~~~~~~~~~l~  252 (297)
T 2ojh_A          182 PDGRWIYFNSSRT---GQMQIWRVRVDG--SS---VERITDSAYGDWFPHPSPSGDKVVFV-SYDADVFDHPRDLDVRVQ  252 (297)
T ss_dssp             TTSSEEEEEECTT---SSCEEEEEETTS--SC---EEECCCCSEEEEEEEECTTSSEEEEE-EEETTCCSCCSSEEEEEE
T ss_pred             CCCCEEEEEecCC---CCccEEEECCCC--CC---cEEEecCCcccCCeEECCCCCEEEEE-EcCCCCCcccccCceEEE
Confidence            2466544444333   478899987422  11   22232222223445666777544431 2111         12599


Q ss_pred             EEeCCCCeEEEEE
Q 018497          313 VYNPHSDTFKCIG  325 (355)
Q Consensus       313 ~yd~~t~~~~~v~  325 (355)
                      .+|+++++.+.+.
T Consensus       253 ~~d~~~~~~~~~~  265 (297)
T 2ojh_A          253 LMDMDGGNVETLF  265 (297)
T ss_dssp             EEETTSCSCEEEE
T ss_pred             EEecCCCCceeee
Confidence            9999998876653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=84.83  E-value=17  Score=30.85  Aligned_cols=93  Identities=11%  Similarity=0.064  Sum_probs=50.3

Q ss_pred             cEEEEEEcCCceeeE-ecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCC----
Q 018497          209 WLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKP----  283 (355)
Q Consensus       209 ~~Il~fD~~~~~~~~-i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~----  283 (355)
                      ..|..+|+.+.+-.. +... .     ....+.-..+...++...+    ..+.||.++..      .....+...    
T Consensus       237 g~i~iwd~~~~~~~~~~~~~-~-----~v~~~~~~~~~~~~~~~~d----~~i~iwd~~~~------~~~~~~~~~~~~~  300 (340)
T 4aow_A          237 GQAMLWDLNEGKHLYTLDGG-D-----IINALCFSPNRYWLCAATG----PSIKIWDLEGK------IIVDELKQEVIST  300 (340)
T ss_dssp             CEEEEEETTTTEEEEEEECS-S-----CEEEEEECSSSSEEEEEET----TEEEEEETTTT------EEEEEECCC----
T ss_pred             CeEEEEEeccCceeeeecCC-c-----eEEeeecCCCCceeeccCC----CEEEEEECCCC------eEEEeccccceee
Confidence            578889988765432 2222 1     1123333344444444444    48899987641      111111111    


Q ss_pred             -----CceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 018497          284 -----QRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT  320 (355)
Q Consensus       284 -----~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~  320 (355)
                           ......+++..+|+.++.  ...++ .+.+||++|++
T Consensus       301 ~~~~h~~~v~~l~~s~dg~~l~s--gs~Dg-~v~iW~~~tGt  339 (340)
T 4aow_A          301 SSKAEPPQCTSLAWSADGQTLFA--GYTDN-LVRVWQVTIGT  339 (340)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEE--EETTS-CEEEEEEEC--
T ss_pred             eccCCCCCEEEEEECCCCCEEEE--EeCCC-EEEEEeCCCcC
Confidence                 113445667778887777  43677 49999999875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=84.73  E-value=17  Score=30.78  Aligned_cols=106  Identities=14%  Similarity=0.074  Sum_probs=58.8

Q ss_pred             CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CCeEEEEEecCCCCccEEEEEEeccC
Q 018497          190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEY  268 (355)
Q Consensus       190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~~  268 (355)
                      +|.+||.....        ..|..||+.+.+...+..| ...     ..++.. +|+|++..  .    ..+.+|..+. 
T Consensus        24 ~~~l~~~d~~~--------~~i~~~d~~~~~~~~~~~~-~~~-----~~i~~~~dG~l~v~~--~----~~l~~~d~~~-   82 (297)
T 3g4e_A           24 SNSLLFVDIPA--------KKVCRWDSFTKQVQRVTMD-APV-----SSVALRQSGGYVATI--G----TKFCALNWKE-   82 (297)
T ss_dssp             TTEEEEEETTT--------TEEEEEETTTCCEEEEECS-SCE-----EEEEEBTTSSEEEEE--T----TEEEEEETTT-
T ss_pred             CCEEEEEECCC--------CEEEEEECCCCcEEEEeCC-Cce-----EEEEECCCCCEEEEE--C----CeEEEEECCC-
Confidence            58999987654        6899999999887776665 322     234433 47765543  2    3554444332 


Q ss_pred             CCCCCeEEEEEecCC-Cc-eeEeEEEeeCCcEEEEEEee--------CCceEEEEEeCCCC
Q 018497          269 GLTESWTKLYTIEKP-QR-IWWPLGFTERGKIFIRGECR--------HGGYGLLVYNPHSD  319 (355)
Q Consensus       269 ~~~~~W~~~~~i~~~-~~-~~~~~~~~~~g~i~~~~~~~--------~~~~~l~~yd~~t~  319 (355)
                         ..+......... .. ...-+.+..+|.+++.....        .....++.+|...+
T Consensus        83 ---g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~  140 (297)
T 3g4e_A           83 ---QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH  140 (297)
T ss_dssp             ---TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC
T ss_pred             ---CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC
Confidence               334444433211 11 22335556678887762110        01125888888643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=84.50  E-value=13  Score=33.57  Aligned_cols=110  Identities=11%  Similarity=0.038  Sum_probs=62.6

Q ss_pred             eCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CCe-EEEEEecCCCCccEEEEEEec
Q 018497          189 LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGY-LCVFATIPNNTFRSYELWVMK  266 (355)
Q Consensus       189 ~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G~-L~~v~~~~~~~~~~l~iW~l~  266 (355)
                      -+|.|||.....        ..|..+|+.+.+...+... ...   ..  ++.. +|+ |++......   .  .||.++
T Consensus       140 ~~g~lyv~d~~~--------~~I~~id~~~g~~~~~~~~-~~~---~~--ia~~~~g~~l~~~d~~~~---~--~I~~~d  200 (409)
T 3hrp_A          140 GNNTVLAYQRDD--------PRVRLISVDDNKVTTVHPG-FKG---GK--PAVTKDKQRVYSIGWEGT---H--TVYVYM  200 (409)
T ss_dssp             STTEEEEEETTT--------TEEEEEETTTTEEEEEEET-CCB---CB--CEECTTSSEEEEEBSSTT---C--EEEEEE
T ss_pred             CCCCEEEEecCC--------CcEEEEECCCCEEEEeecc-CCC---Cc--eeEecCCCcEEEEecCCC---c--eEEEEE
Confidence            478999987654        5899999998888766322 111   11  2322 244 444433222   1  567776


Q ss_pred             cCCCCCCeE--EEEEecC-CCceeEeEEEee-CCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497          267 EYGLTESWT--KLYTIEK-PQRIWWPLGFTE-RGKIFIRGECRHGGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       267 ~~~~~~~W~--~~~~i~~-~~~~~~~~~~~~-~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v  324 (355)
                      ..   ..|.  ....+.. ......-+++.. +|.||+.  . .++ .++.||++++....+
T Consensus       201 ~~---~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~--d-~~~-~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          201 KA---SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFV--D-SNK-NFGRFNVKTQEVTLI  255 (409)
T ss_dssp             GG---GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEE--C-TTC-EEEEEETTTCCEEEE
T ss_pred             cC---CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEE--E-CCC-cEEEEECCCCCEEEE
Confidence            53   2343  2212222 111233466666 6788887  5 455 599999998876555

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=84.11  E-value=19  Score=30.74  Aligned_cols=189  Identities=11%  Similarity=0.043  Sum_probs=92.4

Q ss_pred             eeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCC---------cEEEE-EEcCCCceeEec
Q 018497          100 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLD---------DFKVV-YSLRSNSWKNIA  169 (355)
Q Consensus       100 s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~---------~ykvv-yss~t~~W~~~~  169 (355)
                      ..+|-|.+.+.  ...+++.+||.++....++...   ...++.+++.   .+         ..+|+ |+..+++.+.+.
T Consensus        40 ~~~g~lyv~d~--~~~~I~~~d~~g~~~~~~~~~~---~p~gia~~~d---G~l~vad~~~~~~~v~~~d~~~g~~~~~~  111 (306)
T 2p4o_A           40 APDGTIFVTNH--EVGEIVSITPDGNQQIHATVEG---KVSGLAFTSN---GDLVATGWNADSIPVVSLVKSDGTVETLL  111 (306)
T ss_dssp             CTTSCEEEEET--TTTEEEEECTTCCEEEEEECSS---EEEEEEECTT---SCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEeC--CCCeEEEECCCCceEEEEeCCC---CceeEEEcCC---CcEEEEeccCCcceEEEEcCCCCeEEEEE
Confidence            34677766653  4678899999876544333221   1245555543   22         12333 666777766554


Q ss_pred             cCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe---c-----CCCCCCCCCCceEEEE
Q 018497          170 YGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV---M-----MPYDLSTDDADKYLNV  241 (355)
Q Consensus       170 ~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i---~-----lP~~~~~~~~~~~L~~  241 (355)
                       ..+..... ...   .+.-+|.+|.....        ...|..+|..+.+.+..   .     .+....  ...-.+..
T Consensus       112 -~~~~~~~~-~g~---~~~~~~~~~v~d~~--------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~--~~pngis~  176 (306)
T 2p4o_A          112 -TLPDAIFL-NGI---TPLSDTQYLTADSY--------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVF--PAANGLKR  176 (306)
T ss_dssp             -ECTTCSCE-EEE---EESSSSEEEEEETT--------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCS--CSEEEEEE
T ss_pred             -eCCCcccc-Ccc---cccCCCcEEEEECC--------CCeEEEEeCCCCcEeEEEECCccccccccCCC--CcCCCcCc
Confidence             33221110 100   12334556665432        25899999886533221   1     110111  01122433


Q ss_pred             ECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497          242 FDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF  321 (355)
Q Consensus       242 ~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~  321 (355)
                      -++.|++.....    ..+.++.++..+.-...........    ..-+++..+|.+|+.  ....+ .+..||++. +.
T Consensus       177 dg~~lyv~d~~~----~~I~~~~~~~~g~~~~~~~~~~~~~----P~gi~vd~dG~l~va--~~~~~-~V~~~~~~G-~~  244 (306)
T 2p4o_A          177 FGNFLYVSNTEK----MLLLRIPVDSTDKPGEPEIFVEQTN----IDDFAFDVEGNLYGA--THIYN-SVVRIAPDR-ST  244 (306)
T ss_dssp             ETTEEEEEETTT----TEEEEEEBCTTSCBCCCEEEEESCC----CSSEEEBTTCCEEEE--CBTTC-CEEEECTTC-CE
T ss_pred             CCCEEEEEeCCC----CEEEEEEeCCCCCCCccEEEeccCC----CCCeEECCCCCEEEE--eCCCC-eEEEECCCC-CE
Confidence            345788777654    3555555443111011122222211    223667778889888  52344 599999974 44


Q ss_pred             EE
Q 018497          322 KC  323 (355)
Q Consensus       322 ~~  323 (355)
                      ..
T Consensus       245 ~~  246 (306)
T 2p4o_A          245 TI  246 (306)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=83.90  E-value=18  Score=30.43  Aligned_cols=189  Identities=11%  Similarity=0.006  Sum_probs=90.7

Q ss_pred             CCceEEEEcCCcccEEecCCCC---CCCceeEEEEecCCCCCCcEE-------EE-EEcCCCceeEe-ccCCCceeeecc
Q 018497          113 DRSLIYLWNPLIKKYMTLPRPS---LNPRYLGFGVNSVSGHLDDFK-------VV-YSLRSNSWKNI-AYGFPRSIEINR  180 (355)
Q Consensus       113 ~~~~~~V~NP~T~~~~~LP~~~---~~~~~~~~g~d~~~~~~~~yk-------vv-yss~t~~W~~~-~~~~p~~~~~~~  180 (355)
                      ....++++||.+++...+..+.   ......++.+++.   .+..-       |. |+.. ++.+.+ . ..........
T Consensus        44 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~---~g~l~v~~~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~  118 (314)
T 1pjx_A           44 PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD---ANQLFVADMRLGLLVVQTD-GTFEEIAK-KDSEGRRMQG  118 (314)
T ss_dssp             ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS---SSEEEEEETTTEEEEEETT-SCEEECCS-BCTTSCBCBC
T ss_pred             CCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecC---CCcEEEEECCCCEEEEeCC-CCEEEEEe-ccCCCccccC
Confidence            3567999999998887654311   0011255666653   23322       22 7776 665544 3 1111111111


Q ss_pred             ccccceeEe--CceEEEEEeeecc-------CCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-----CC-e
Q 018497          181 SHINSSVFL--NGSVHWCARFSCY-------HDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-----DG-Y  245 (355)
Q Consensus       181 ~~~~~~v~~--~G~lyw~~~~~~~-------~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-----~G-~  245 (355)
                      ..   .+.+  +|.+|+.......       ........|..+|.. ++...+.-. ..    ....++..     +| .
T Consensus       119 ~~---~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-~~----~~~~i~~~~~~d~dg~~  189 (314)
T 1pjx_A          119 CN---DCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA-FQ----FPNGIAVRHMNDGRPYQ  189 (314)
T ss_dssp             CC---EEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE-ES----SEEEEEEEECTTSCEEE
T ss_pred             Cc---CEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC-CC----CcceEEEecccCCCCCE
Confidence            11   3433  6877765542100       000112479999987 555443111 00    11123333     45 4


Q ss_pred             EEEEEecCCCCccEEEEEEeccCCCCCCeEEE---EEecCCC-ceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe-
Q 018497          246 LCVFATIPNNTFRSYELWVMKEYGLTESWTKL---YTIEKPQ-RIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT-  320 (355)
Q Consensus       246 L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~---~~i~~~~-~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~-  320 (355)
                      |++.....    ..+.+|.++..   ......   ..++... ....-+++..+|.+++.  ...++ .+..||+++++ 
T Consensus       190 l~v~~~~~----~~i~~~~~~~~---g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~~~~~-~i~~~d~~~g~~  259 (314)
T 1pjx_A          190 LIVAETPT----KKLWSYDIKGP---AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA--NWGSS-HIEVFGPDGGQP  259 (314)
T ss_dssp             EEEEETTT----TEEEEEEEEET---TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE--EETTT-EEEEECTTCBSC
T ss_pred             EEEEECCC----CeEEEEECCCC---CccccceEEEECCCCCCCCCCceEECCCCCEEEE--EcCCC-EEEEEcCCCCcE
Confidence            56555433    47777776531   223322   1222111 12233555667888888  52345 49999999554 


Q ss_pred             EEEEE
Q 018497          321 FKCIG  325 (355)
Q Consensus       321 ~~~v~  325 (355)
                      ...+.
T Consensus       260 ~~~~~  264 (314)
T 1pjx_A          260 KMRIR  264 (314)
T ss_dssp             SEEEE
T ss_pred             eEEEe
Confidence            34443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=83.43  E-value=21  Score=30.76  Aligned_cols=68  Identities=9%  Similarity=0.092  Sum_probs=43.8

Q ss_pred             CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCC--Ce
Q 018497          243 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHS--DT  320 (355)
Q Consensus       243 ~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t--~~  320 (355)
                      +|.+.++...+    ..+.+|.++..      ..+..+.........+.+..+|.++..  . .++. +..||+.+  ++
T Consensus       213 ~~~~l~~~~~d----~~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~--~-~d~~-i~i~~~~~~~~~  278 (372)
T 1k8k_C          213 NGSRVAWVSHD----STVCLADADKK------MAVATLASETLPLLAVTFITESSLVAA--G-HDCF-PVLFTYDSAAGK  278 (372)
T ss_dssp             SSSEEEEEETT----TEEEEEEGGGT------TEEEEEECSSCCEEEEEEEETTEEEEE--E-TTSS-CEEEEEETTTTE
T ss_pred             CCCEEEEEeCC----CEEEEEECCCC------ceeEEEccCCCCeEEEEEecCCCEEEE--E-eCCe-EEEEEccCcCce
Confidence            46665555555    48999998752      233333332222455667778888777  6 6664 99999988  87


Q ss_pred             EEEE
Q 018497          321 FKCI  324 (355)
Q Consensus       321 ~~~v  324 (355)
                      |..+
T Consensus       279 ~~~~  282 (372)
T 1k8k_C          279 LSFG  282 (372)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=83.32  E-value=19  Score=30.05  Aligned_cols=184  Identities=9%  Similarity=0.129  Sum_probs=94.1

Q ss_pred             eeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcE-------EEE-EEcCCCceeEeccC
Q 018497          100 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDF-------KVV-YSLRSNSWKNIAYG  171 (355)
Q Consensus       100 s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~y-------kvv-yss~t~~W~~~~~~  171 (355)
                      ..+|.+.+... .....+.++|+..+....+..... ....++.+|+.   .+-|       +|. |+.....-+.+. .
T Consensus        86 ~~~g~l~v~~~-~~~~~i~~~d~~g~~~~~~~~~~~-~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~g~~~~~~~-~  159 (286)
T 1q7f_A           86 RNSGDIIVTER-SPTHQIQIYNQYGQFVRKFGATIL-QHPRGVTVDNK---GRIIVVECKVMRVIIFDQNGNVLHKFG-C  159 (286)
T ss_dssp             TTTTEEEEEEC-GGGCEEEEECTTSCEEEEECTTTC-SCEEEEEECTT---SCEEEEETTTTEEEEECTTSCEEEEEE-C
T ss_pred             cCCCeEEEEcC-CCCCEEEEECCCCcEEEEecCccC-CCceEEEEeCC---CCEEEEECCCCEEEEEcCCCCEEEEeC-C
Confidence            35777766652 025688999965554444543211 12256666664   3211       111 554433333332 1


Q ss_pred             CCceeeeccccccceeEe--CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CCeEEE
Q 018497          172 FPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGYLCV  248 (355)
Q Consensus       172 ~p~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G~L~~  248 (355)
                      ... .  ....   ++.+  +|.+|......        ..|..||...+....+..+ ....  ....++.. +|+|++
T Consensus       160 ~~~-~--~~p~---~i~~~~~g~l~v~~~~~--------~~i~~~~~~g~~~~~~~~~-g~~~--~p~~i~~d~~G~l~v  222 (286)
T 1q7f_A          160 SKH-L--EFPN---GVVVNDKQEIFISDNRA--------HCVKVFNYEGQYLRQIGGE-GITN--YPIGVGINSNGEILI  222 (286)
T ss_dssp             TTT-C--SSEE---EEEECSSSEEEEEEGGG--------TEEEEEETTCCEEEEESCT-TTSC--SEEEEEECTTCCEEE
T ss_pred             CCc-c--CCcE---EEEECCCCCEEEEECCC--------CEEEEEcCCCCEEEEEccC-CccC--CCcEEEECCCCCEEE
Confidence            100 0  0011   3443  58877765443        5899999987766666433 2211  22334443 588888


Q ss_pred             EEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCC
Q 018497          249 FATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHS  318 (355)
Q Consensus       249 v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t  318 (355)
                      +....+   ..+.+|..+     ..-..............-+++..+|.+|+.  . .++ .+.+|+...
T Consensus       223 ~~~~~~---~~i~~~~~~-----g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs--~-~~~-~v~v~~~~~  280 (286)
T 1q7f_A          223 ADNHNN---FNLTIFTQD-----GQLISALESKVKHAQCFDVALMDDGSVVLA--S-KDY-RLYIYRYVQ  280 (286)
T ss_dssp             EECSSS---CEEEEECTT-----SCEEEEEEESSCCSCEEEEEEETTTEEEEE--E-TTT-EEEEEECSC
T ss_pred             EeCCCC---EEEEEECCC-----CCEEEEEcccCCCCcceeEEECCCCcEEEE--C-CCC-eEEEEEccc
Confidence            775442   277777532     122222222221112334666778888888  6 555 488887754

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=83.17  E-value=21  Score=30.59  Aligned_cols=188  Identities=10%  Similarity=0.078  Sum_probs=93.9

Q ss_pred             CCceEEEEcCCcccEEecCCCCCC------------------CceeEEEEecCCCCCCcEEEE--------EEcCCCcee
Q 018497          113 DRSLIYLWNPLIKKYMTLPRPSLN------------------PRYLGFGVNSVSGHLDDFKVV--------YSLRSNSWK  166 (355)
Q Consensus       113 ~~~~~~V~NP~T~~~~~LP~~~~~------------------~~~~~~g~d~~~~~~~~ykvv--------yss~t~~W~  166 (355)
                      ...+++.+||.+++...+......                  ....++.+++.   .+..-|.        |+..++..+
T Consensus        38 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~---~g~l~v~d~~~~i~~~d~~~g~~~  114 (322)
T 2fp8_A           38 QDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ---NNQLYIVDCYYHLSVVGSEGGHAT  114 (322)
T ss_dssp             TTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT---TTEEEEEETTTEEEEECTTCEECE
T ss_pred             CCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCC---CCcEEEEECCCCEEEEeCCCCEEE
Confidence            456788888888766544321100                  11266777763   2222221        666666555


Q ss_pred             EeccCCCceeeeccccccceeEe---CceEEEEEeeecc-C--------CCCCCcEEEEEEcCCceeeEe----cCCCCC
Q 018497          167 NIAYGFPRSIEINRSHINSSVFL---NGSVHWCARFSCY-H--------DNSCPWLIVSFDFAKEIFQTV----MMPYDL  230 (355)
Q Consensus       167 ~~~~~~p~~~~~~~~~~~~~v~~---~G~lyw~~~~~~~-~--------~~~~~~~Il~fD~~~~~~~~i----~lP~~~  230 (355)
                      .+. ............   .+.+   +|.+|+....... .        .......|..||..+.+...+    ..| . 
T Consensus       115 ~~~-~~~~~~~~~~p~---~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-~-  188 (322)
T 2fp8_A          115 QLA-TSVDGVPFKWLY---AVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVP-G-  188 (322)
T ss_dssp             EEE-SEETTEECSCEE---EEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCC-C-
T ss_pred             Eec-ccCCCCcccccc---eEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccC-c-
Confidence            443 111111111111   3443   6788886543100 0        011235799999988776554    223 1 


Q ss_pred             CCCCCceEEEEE-CCe-EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeC--
Q 018497          231 STDDADKYLNVF-DGY-LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH--  306 (355)
Q Consensus       231 ~~~~~~~~L~~~-~G~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~--  306 (355)
                             .++.. +|+ |++.....    ..+.++.++... .........++  .  ..-+++..+|.|++.  ...  
T Consensus       189 -------gia~~~dg~~lyv~d~~~----~~I~~~~~~~~~-~~~~~~~~~~~--g--P~gi~~d~~G~l~va--~~~~~  250 (322)
T 2fp8_A          189 -------GAEVSADSSFVLVAEFLS----HQIVKYWLEGPK-KGTAEVLVKIP--N--PGNIKRNADGHFWVS--SSEEL  250 (322)
T ss_dssp             -------EEEECTTSSEEEEEEGGG----TEEEEEESSSTT-TTCEEEEEECS--S--EEEEEECTTSCEEEE--EEEET
T ss_pred             -------ceEECCCCCEEEEEeCCC----CeEEEEECCCCc-CCccceEEeCC--C--CCCeEECCCCCEEEE--ecCcc
Confidence                   23333 354 77766543    355444444211 12333332221  1  222455567788887  412  


Q ss_pred             ------C-ceEEEEEeCCCCeEEEEEEe
Q 018497          307 ------G-GYGLLVYNPHSDTFKCIGVH  327 (355)
Q Consensus       307 ------~-~~~l~~yd~~t~~~~~v~~~  327 (355)
                            . ...+..||++.+.++.+...
T Consensus       251 ~~~~~~~~~~~v~~~d~~G~~~~~~~~~  278 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDEFGNILEVIPLP  278 (322)
T ss_dssp             TSSTTSCEEEEEEEECTTSCEEEEEECC
T ss_pred             cccccCCCccEEEEECCCCCEEEEEECC
Confidence                  0 12599999988777777654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=83.07  E-value=33  Score=32.65  Aligned_cols=193  Identities=10%  Similarity=-0.021  Sum_probs=96.4

Q ss_pred             CceEEEeecCCCCceEEEEcCCcccEE-ecCCCCCCCceeEEEEecCCCCCCcEEE-------E-EEcCCCceeEeccCC
Q 018497          102 NGVLCFCSNGSDRSLIYLWNPLIKKYM-TLPRPSLNPRYLGFGVNSVSGHLDDFKV-------V-YSLRSNSWKNIAYGF  172 (355)
Q Consensus       102 ~GLl~l~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~g~d~~~~~~~~ykv-------v-yss~t~~W~~~~~~~  172 (355)
                      ++++.+...  ....+.|+|+.|++.. .+|....   ..++.++|.   ++...|       . ||..+.+-+.+. .+
T Consensus       166 ~~~~~V~~~--~~~~V~viD~~t~~v~~~i~~g~~---p~~v~~SpD---Gr~lyv~~~dg~V~viD~~~~t~~~v~-~i  236 (567)
T 1qks_A          166 ENLFSVTLR--DAGQIALIDGSTYEIKTVLDTGYA---VHISRLSAS---GRYLFVIGRDGKVNMIDLWMKEPTTVA-EI  236 (567)
T ss_dssp             GGEEEEEET--TTTEEEEEETTTCCEEEEEECSSC---EEEEEECTT---SCEEEEEETTSEEEEEETTSSSCCEEE-EE
T ss_pred             CceEEEEeC--CCCeEEEEECCCCeEEEEEeCCCC---ccceEECCC---CCEEEEEcCCCeEEEEECCCCCCcEeE-EE
Confidence            456655553  6788999999998776 4543321   134555553   222111       1 666422223333 22


Q ss_pred             CceeeeccccccceeEe-----CceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCC------C-CceEE
Q 018497          173 PRSIEINRSHINSSVFL-----NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTD------D-ADKYL  239 (355)
Q Consensus       173 p~~~~~~~~~~~~~v~~-----~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~------~-~~~~L  239 (355)
                      +.+.....     ..+-     +|+.-+++...       ...+.++|..+.+- ..|++. ....+      . ....+
T Consensus       237 ~~G~~P~~-----ia~s~~~~pDGk~l~v~n~~-------~~~v~ViD~~t~~~~~~i~~~-~~~~~~~~~~p~~rva~i  303 (567)
T 1qks_A          237 KIGSEARS-----IETSKMEGWEDKYAIAGAYW-------PPQYVIMDGETLEPKKIQSTR-GMTYDEQEYHPEPRVAAI  303 (567)
T ss_dssp             ECCSEEEE-----EEECCSTTCTTTEEEEEEEE-------TTEEEEEETTTCCEEEEEECC-EECTTTCCEESCCCEEEE
T ss_pred             ecCCCCce-----eEEccccCCCCCEEEEEEcc-------CCeEEEEECCCCcEEEEEecc-ccccccccccCCCceEEE
Confidence            22211110     2233     67544444333       36889999877554 334443 21100      0 11223


Q ss_pred             EEEC-CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCC
Q 018497          240 NVFD-GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHS  318 (355)
Q Consensus       240 ~~~~-G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t  318 (355)
                      ..+. +..+++...+.   ..  ||..+-..  ....++..|+... ....+++..+|+-+++. . ...+++.++|.++
T Consensus       304 ~~s~~~~~~vv~~~~~---g~--v~~vd~~~--~~~~~v~~i~~~~-~~~d~~~~pdgr~~~va-~-~~sn~V~ViD~~t  373 (567)
T 1qks_A          304 LASHYRPEFIVNVKET---GK--ILLVDYTD--LNNLKTTEISAER-FLHDGGLDGSHRYFITA-A-NARNKLVVIDTKE  373 (567)
T ss_dssp             EECSSSSEEEEEETTT---TE--EEEEETTC--SSEEEEEEEECCS-SEEEEEECTTSCEEEEE-E-GGGTEEEEEETTT
T ss_pred             EEcCCCCEEEEEecCC---Ce--EEEEecCC--Cccceeeeeeccc-cccCceECCCCCEEEEE-e-CCCCeEEEEECCC
Confidence            3333 45555555332   23  45554321  2345556665544 34557778888655551 3 2223699999999


Q ss_pred             CeEEE-EEE
Q 018497          319 DTFKC-IGV  326 (355)
Q Consensus       319 ~~~~~-v~~  326 (355)
                      +++.. +.+
T Consensus       374 ~kl~~~i~v  382 (567)
T 1qks_A          374 GKLVAIEDT  382 (567)
T ss_dssp             TEEEEEEEC
T ss_pred             CcEEEEEec
Confidence            98754 454

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=83.06  E-value=18  Score=29.70  Aligned_cols=182  Identities=12%  Similarity=0.020  Sum_probs=94.8

Q ss_pred             EEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcEEEE---------EEcCCCceeE
Q 018497           97 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVV---------YSLRSNSWKN  167 (355)
Q Consensus        97 ~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykvv---------yss~t~~W~~  167 (355)
                      +.-..+|-+.+..   ....++++||.++....++.... ....++.+|+.   +. .-|.         |+.++.....
T Consensus        72 i~~~~~g~l~v~~---~~~~i~~~d~~~~~~~~~~~~~~-~~p~~i~~~~~---g~-l~v~~~~~~~i~~~~~~~~~~~~  143 (270)
T 1rwi_B           72 LAVDGAGTVYVTD---FNNRVVTLAAGSNNQTVLPFDGL-NYPEGLAVDTQ---GA-VYVADRGNNRVVKLAAGSKTQTV  143 (270)
T ss_dssp             EEECTTCCEEEEE---TTTEEEEECTTCSCCEECCCCSC-SSEEEEEECTT---CC-EEEEEGGGTEEEEECTTCCSCEE
T ss_pred             eEECCCCCEEEEc---CCCEEEEEeCCCceEeeeecCCc-CCCcceEECCC---CC-EEEEECCCCEEEEEECCCceeEe
Confidence            3334467666665   25689999998887666643221 12256667764   32 2111         4444333222


Q ss_pred             eccCCCceeeeccccccceeEe--CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CC
Q 018497          168 IAYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DG  244 (355)
Q Consensus       168 ~~~~~p~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G  244 (355)
                      .. ..  ..  ....   ++.+  +|.+|+.....        ..|..||..+.........  ..  .....++.. +|
T Consensus       144 ~~-~~--~~--~~p~---~i~~~~~g~l~v~~~~~--------~~i~~~~~~~~~~~~~~~~--~~--~~p~~i~~d~~g  203 (270)
T 1rwi_B          144 LP-FT--GL--NDPD---GVAVDNSGNVYVTDTDN--------NRVVKLEAESNNQVVLPFT--DI--TAPWGIAVDEAG  203 (270)
T ss_dssp             CC-CC--SC--CSCC---CEEECTTCCEEEEEGGG--------TEEEEECTTTCCEEECCCS--SC--CSEEEEEECTTC
T ss_pred             ec-cc--cC--CCce---eEEEeCCCCEEEEECCC--------CEEEEEecCCCceEeeccc--CC--CCceEEEECCCC
Confidence            11 00  00  0111   3433  58888776543        5899999988765443222  11  122344444 47


Q ss_pred             eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 018497          245 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT  320 (355)
Q Consensus       245 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~  320 (355)
                      .|++.....+    .+.+|..+.   .....    +..... ....+++..+|.+|+.  ...++ .+..|++..++
T Consensus       204 ~l~v~~~~~~----~v~~~~~~~---~~~~~----~~~~~~~~p~~i~~~~~g~l~v~--~~~~~-~v~~~~~~~~~  266 (270)
T 1rwi_B          204 TVYVTEHNTN----QVVKLLAGS---TTSTV----LPFTGLNTPLAVAVDSDRTVYVA--DRGND-RVVKLTSLEHH  266 (270)
T ss_dssp             CEEEEETTTS----CEEEECTTC---SCCEE----CCCCSCSCEEEEEECTTCCEEEE--EGGGT-EEEEECCCGGG
T ss_pred             CEEEEECCCC----cEEEEcCCC---Cccee----eccCCCCCceeEEECCCCCEEEE--ECCCC-EEEEEcCCCcc
Confidence            8888775443    555554432   11111    221111 2334556667888888  53445 59999887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=82.75  E-value=19  Score=29.63  Aligned_cols=181  Identities=10%  Similarity=0.003  Sum_probs=89.5

Q ss_pred             CCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcE------EEE-EEcCC-CceeEeccCCCceeeecccccc
Q 018497          113 DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDF------KVV-YSLRS-NSWKNIAYGFPRSIEINRSHIN  184 (355)
Q Consensus       113 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~y------kvv-yss~t-~~W~~~~~~~p~~~~~~~~~~~  184 (355)
                      ....++++|+.+++...+......  ...+.+.|.   +..+      +|. ++..+ +..+.+. ........ ...  
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~~~~~--v~~~~~spd---g~~l~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~-~~~--   90 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQTPEL--FEAPNWSPD---GKYLLLNSEGLLYRLSLAGDPSPEKVD-TGFATICN-NDH--   90 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEEESSC--CEEEEECTT---SSEEEEEETTEEEEEESSSCCSCEECC-CTTCCCBC-SCC--
T ss_pred             cceeEEEEeCCCCceeeeccCCcc--eEeeEECCC---CCEEEEEcCCeEEEEeCCCCCCceEec-cccccccc-cce--
Confidence            567899999999888766543222  133444443   2211      122 77777 6665444 22110100 100  


Q ss_pred             ceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CCe-EEEEEecCCCCccEEEE
Q 018497          185 SSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGY-LCVFATIPNNTFRSYEL  262 (355)
Q Consensus       185 ~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G~-L~~v~~~~~~~~~~l~i  262 (355)
                       ...-+|.........    ......|..+|..+.....+... ..     ...+.-. +|+ |++....+    ..+.|
T Consensus        91 -~~spdg~~l~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~-~~-----~~~~~~spdg~~l~~~~~~~----~~~~l  155 (297)
T 2ojh_A           91 -GISPDGALYAISDKV----EFGKSAIYLLPSTGGTPRLMTKN-LP-----SYWHGWSPDGKSFTYCGIRD----QVFDI  155 (297)
T ss_dssp             -EECTTSSEEEEEECT----TTSSCEEEEEETTCCCCEECCSS-SS-----EEEEEECTTSSEEEEEEEET----TEEEE
T ss_pred             -EECCCCCEEEEEEeC----CCCcceEEEEECCCCceEEeecC-CC-----ccceEECCCCCEEEEEECCC----CceEE
Confidence             223366544444321    12346888899887776555332 21     1122222 455 44444444    47899


Q ss_pred             EEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCc-EEEEEEeeCCce-EEEEEeCCCCeEEEE
Q 018497          263 WVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFIRGECRHGGY-GLLVYNPHSDTFKCI  324 (355)
Q Consensus       263 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~-~l~~yd~~t~~~~~v  324 (355)
                      |.++...  ...   ..+.........+.+..+|+ |++.  ...++. .++.++..++..+.+
T Consensus       156 ~~~~~~~--~~~---~~~~~~~~~~~~~~~s~dg~~l~~~--~~~~~~~~i~~~~~~~~~~~~~  212 (297)
T 2ojh_A          156 YSMDIDS--GVE---TRLTHGEGRNDGPDYSPDGRWIYFN--SSRTGQMQIWRVRVDGSSVERI  212 (297)
T ss_dssp             EEEETTT--CCE---EECCCSSSCEEEEEECTTSSEEEEE--ECTTSSCEEEEEETTSSCEEEC
T ss_pred             EEEECCC--Ccc---eEcccCCCccccceECCCCCEEEEE--ecCCCCccEEEECCCCCCcEEE
Confidence            9987532  112   12221111234455566775 4444  311222 577778777776655

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=82.64  E-value=25  Score=31.09  Aligned_cols=100  Identities=13%  Similarity=0.049  Sum_probs=55.7

Q ss_pred             CcEEEEEEcCCceee-EecCCCCCCCCCCceEEEEE-CCeEEEEE-ecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC
Q 018497          208 PWLIVSFDFAKEIFQ-TVMMPYDLSTDDADKYLNVF-DGYLCVFA-TIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ  284 (355)
Q Consensus       208 ~~~Il~fD~~~~~~~-~i~lP~~~~~~~~~~~L~~~-~G~L~~v~-~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~  284 (355)
                      ...|..+|+.+.+.. .+..+ ..     ...+.-. +|+..++. +..+   ..+.||.+..    ........+....
T Consensus       283 d~~i~i~d~~~~~~~~~~~~~-~~-----v~~~~~s~~~~~l~~~~g~~d---g~i~v~~~~~----~~~~~~~~~~~h~  349 (401)
T 4aez_A          283 DKQIHFWNAATGARVNTVDAG-SQ-----VTSLIWSPHSKEIMSTHGFPD---NNLSIWSYSS----SGLTKQVDIPAHD  349 (401)
T ss_dssp             TCEEEEEETTTCCEEEEEECS-SC-----EEEEEECSSSSEEEEEECTTT---CEEEEEEEET----TEEEEEEEEECCS
T ss_pred             CCEEEEEECCCCCEEEEEeCC-Cc-----EEEEEECCCCCeEEEEeecCC---CcEEEEecCC----ccceeEEEecCCC
Confidence            357889998876543 23322 11     1222222 35555543 3333   5999999885    3355555554332


Q ss_pred             ceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497          285 RIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC  323 (355)
Q Consensus       285 ~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~  323 (355)
                      .....+.+..+|..++.  ...++ .+..||+.+++...
T Consensus       350 ~~v~~~~~s~dg~~l~s--~~~dg-~i~iw~~~~~~~~~  385 (401)
T 4aez_A          350 TRVLYSALSPDGRILST--AASDE-NLKFWRVYDGDHVK  385 (401)
T ss_dssp             SCCCEEEECTTSSEEEE--ECTTS-EEEEEECCC-----
T ss_pred             CCEEEEEECCCCCEEEE--EeCCC-cEEEEECCCCcccc
Confidence            23444666778877776  53566 59999999887543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=81.97  E-value=24  Score=30.25  Aligned_cols=33  Identities=9%  Similarity=0.064  Sum_probs=22.5

Q ss_pred             eEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 018497          287 WWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK  322 (355)
Q Consensus       287 ~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~  322 (355)
                      ...+.+..+|..++.  ...++ .+.+||.++++..
T Consensus       276 v~~~~~sp~~~~l~s--~~~dg-~i~iwd~~~~~~~  308 (368)
T 3mmy_A          276 VNGIAFHPVHGTLAT--VGSDG-RFSFWDKDARTKL  308 (368)
T ss_dssp             EEEEEECTTTCCEEE--EETTS-CEEEEETTTTEEE
T ss_pred             eEEEEEecCCCEEEE--EccCC-eEEEEECCCCcEE
Confidence            344566677766666  43667 4999999987654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=81.82  E-value=27  Score=30.84  Aligned_cols=187  Identities=9%  Similarity=-0.014  Sum_probs=91.5

Q ss_pred             CCceEEEEcCCcccEEe-cCCCCCCCceeEEEEecCCCCCCcE-------EEE-EEcCCCceeEeccCCCceeeeccccc
Q 018497          113 DRSLIYLWNPLIKKYMT-LPRPSLNPRYLGFGVNSVSGHLDDF-------KVV-YSLRSNSWKNIAYGFPRSIEINRSHI  183 (355)
Q Consensus       113 ~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~g~d~~~~~~~~y-------kvv-yss~t~~W~~~~~~~p~~~~~~~~~~  183 (355)
                      .++.+.|||..+++... +...........+.+.+.   +..+       +|. |+.+++.-...- ...........  
T Consensus       152 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~--  225 (402)
T 2aq5_A          152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD---GALICTSCRDKRVRVIEPRKGTVVAEK-DRPHEGTRPVH--  225 (402)
T ss_dssp             TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT---SSCEEEEETTSEEEEEETTTTEEEEEE-ECSSCSSSCCE--
T ss_pred             CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC---CCEEEEEecCCcEEEEeCCCCceeeee-ccCCCCCcceE--
Confidence            57789999999887653 321111112245555553   2211       111 777765432111 00000000000  


Q ss_pred             cceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee--eEecCCCCCCCCCCceEEEE-ECCeEEEEEecCCCCccEE
Q 018497          184 NSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF--QTVMMPYDLSTDDADKYLNV-FDGYLCVFATIPNNTFRSY  260 (355)
Q Consensus       184 ~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~--~~i~lP~~~~~~~~~~~L~~-~~G~L~~v~~~~~~~~~~l  260 (355)
                       ....-+|.+...+..     ......|..+|+.+..-  ....++ ...   ....+.- -+|+..++....+   ..+
T Consensus       226 -~~~~~~~~~l~~g~~-----~~~d~~i~iwd~~~~~~~~~~~~~~-~~~---~v~~~~~s~~~~~l~~~g~~d---g~i  292 (402)
T 2aq5_A          226 -AVFVSEGKILTTGFS-----RMSERQVALWDTKHLEEPLSLQELD-TSS---GVLLPFFDPDTNIVYLCGKGD---SSI  292 (402)
T ss_dssp             -EEECSTTEEEEEEEC-----TTCCEEEEEEETTBCSSCSEEEECC-CCS---SCEEEEEETTTTEEEEEETTC---SCE
T ss_pred             -EEEcCCCcEEEEecc-----CCCCceEEEEcCccccCCceEEecc-CCC---ceeEEEEcCCCCEEEEEEcCC---CeE
Confidence             012235665555411     01235899999986442  222333 211   1223332 3455554444333   599


Q ss_pred             EEEEeccCCCCCCeE-EEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEEe
Q 018497          261 ELWVMKEYGLTESWT-KLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVH  327 (355)
Q Consensus       261 ~iW~l~~~~~~~~W~-~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~~  327 (355)
                      .+|.++..   ..+. ......... ....+++..++.+++.    .++ .+..|++.+++.+.+.+.
T Consensus       293 ~i~d~~~~---~~~~~~l~~~~~~~-~v~~~~~sp~~~~~~s----~~~-~~~~~~l~~~~~~~i~~~  351 (402)
T 2aq5_A          293 RYFEITSE---APFLHYLSMFSSKE-SQRGMGYMPKRGLEVN----KCE-IARFYKLHERKCEPIAMT  351 (402)
T ss_dssp             EEEEECSS---TTCEEEEEEECCSS-CCSEEEECCGGGSCGG----GTE-EEEEEEEETTEEEEEEEE
T ss_pred             EEEEecCC---CcceEeecccccCC-cccceEEeccccccee----cce-eEEEEEcCCCcEEEEEEE
Confidence            99999862   2222 233333111 2444666667665544    455 488999999999888654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=81.78  E-value=23  Score=30.03  Aligned_cols=108  Identities=15%  Similarity=0.142  Sum_probs=58.7

Q ss_pred             cEEEEEEcC--Cceee---Ee-cCCCCCCCCC-CceEEEEE-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEe
Q 018497          209 WLIVSFDFA--KEIFQ---TV-MMPYDLSTDD-ADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI  280 (355)
Q Consensus       209 ~~Il~fD~~--~~~~~---~i-~lP~~~~~~~-~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i  280 (355)
                      ..|..||+.  +.++.   .+ .+| ...... ....+.-. +|+..++.....   ..+.+|.++...  ..+..+..+
T Consensus       200 ~~i~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~i~~s~dg~~l~v~~~~~---~~i~v~d~~~~~--~~~~~~~~~  273 (343)
T 1ri6_A          200 SSVDVWELKDPHGNIECVQTLDMMP-ENFSDTRWAADIHITPDGRHLYACDRTA---SLITVFSVSEDG--SVLSKEGFQ  273 (343)
T ss_dssp             TEEEEEESSCTTSCCEEEEEEECSC-TTCCSCCCEEEEEECTTSSEEEEEETTT---TEEEEEEECTTS--CCEEEEEEE
T ss_pred             CEEEEEEecCCCCcEEEEeeccccC-ccccccCCccceEECCCCCEEEEEecCC---CEEEEEEEcCCC--CceEEeeee
Confidence            578899984  34443   23 344 332111 11223333 354434444333   589999998532  356776666


Q ss_pred             cCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEE--eCCCCeEEEEE
Q 018497          281 EKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVY--NPHSDTFKCIG  325 (355)
Q Consensus       281 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~y--d~~t~~~~~v~  325 (355)
                      +.... ...+++..+|+.++.. ...++ .+.+|  |.++++++.+.
T Consensus       274 ~~~~~-~~~~~~s~dg~~l~~~-~~~~~-~v~v~~~d~~~g~~~~~~  317 (343)
T 1ri6_A          274 PTETQ-PRGFNVDHSGKYLIAA-GQKSH-HISVYEIVGEQGLLHEKG  317 (343)
T ss_dssp             ECSSS-CCCEEECTTSSEEEEE-CTTTC-EEEEEEEETTTTEEEEEE
T ss_pred             cCCCc-cceEEECCCCCEEEEe-cCCCC-eEEEEEEcCCCceeeEcc
Confidence            65432 3346677778644441 31234 36666  88888887763

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=81.61  E-value=23  Score=29.79  Aligned_cols=189  Identities=12%  Similarity=0.101  Sum_probs=96.1

Q ss_pred             CCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcE-------EEE-EEcCCCceeEeccCCCceeeecccccc
Q 018497          113 DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDF-------KVV-YSLRSNSWKNIAYGFPRSIEINRSHIN  184 (355)
Q Consensus       113 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~y-------kvv-yss~t~~W~~~~~~~p~~~~~~~~~~~  184 (355)
                      ....++++||.++ ...+..+..  ...++.+++.   ..-|       .|. |+..+++.+.+. ............ .
T Consensus        48 ~~~~i~~~~~~~~-~~~~~~~~~--~~~~l~~~~d---g~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~-~  119 (296)
T 3e5z_A           48 RQNRTWAWSDDGQ-LSPEMHPSH--HQNGHCLNKQ---GHLIACSHGLRRLERQREPGGEWESIA-DSFEGKKLNSPN-D  119 (296)
T ss_dssp             GGTEEEEEETTSC-EEEEESSCS--SEEEEEECTT---CCEEEEETTTTEEEEECSTTCCEEEEE-CEETTEECCCCC-C
T ss_pred             CCCEEEEEECCCC-eEEEECCCC--CcceeeECCC---CcEEEEecCCCeEEEEcCCCCcEEEEe-eccCCCCCCCCC-C
Confidence            4678999999998 555543221  1245666654   3211       222 777777776554 111111111111 0


Q ss_pred             ceeEeCceEEEEEeeecc---------CCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CCeEEEEEecCC
Q 018497          185 SSVFLNGSVHWCARFSCY---------HDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGYLCVFATIPN  254 (355)
Q Consensus       185 ~~v~~~G~lyw~~~~~~~---------~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~  254 (355)
                      ..+.-+|.+|+.......         ........|..+|.. .+...+.-.   ..  ..-.++.. +|++. +.....
T Consensus       120 i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~---~~--~~~gi~~s~dg~~l-v~~~~~  192 (296)
T 3e5z_A          120 VCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD---RV--KPNGLAFLPSGNLL-VSDTGD  192 (296)
T ss_dssp             EEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC---CS--SEEEEEECTTSCEE-EEETTT
T ss_pred             EEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC---CC--CCccEEECCCCCEE-EEeCCC
Confidence            022337887775321000         001113479999988 555544211   10  11223333 47666 444433


Q ss_pred             CCccEEEEEEeccCCCCCCe-EEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEEe
Q 018497          255 NTFRSYELWVMKEYGLTESW-TKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVH  327 (355)
Q Consensus       255 ~~~~~l~iW~l~~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~~  327 (355)
                         ..+.+|.++..   ... .....+........-+++..+|.|++.  .  ++ .|..||++.+.+..+...
T Consensus       193 ---~~i~~~~~~~~---g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~--~~-~v~~~~~~g~~~~~~~~~  255 (296)
T 3e5z_A          193 ---NATHRYCLNAR---GETEYQGVHFTVEPGKTDGLRVDAGGLIWAS--A--GD-GVHVLTPDGDELGRVLTP  255 (296)
T ss_dssp             ---TEEEEEEECSS---SCEEEEEEEECCSSSCCCSEEEBTTSCEEEE--E--TT-EEEEECTTSCEEEEEECS
T ss_pred             ---CeEEEEEECCC---CcCcCCCeEeeCCCCCCCeEEECCCCCEEEE--c--CC-eEEEECCCCCEEEEEECC
Confidence               47777877632   334 333333111112233666778898888  5  44 499999998877777654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=81.55  E-value=24  Score=30.07  Aligned_cols=108  Identities=10%  Similarity=-0.014  Sum_probs=60.4

Q ss_pred             eCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CCeEEEEEecCCCCccEEEEEEecc
Q 018497          189 LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKE  267 (355)
Q Consensus       189 ~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~  267 (355)
                      -+|.+||.....        ..|..+|+.++.-..+..+ ..     ...++.. +|+|+++.....    ...|+.++.
T Consensus        41 ~~g~lyv~d~~~--------~~I~~~d~~g~~~~~~~~~-~~-----p~gia~~~dG~l~vad~~~~----~~~v~~~d~  102 (306)
T 2p4o_A           41 PDGTIFVTNHEV--------GEIVSITPDGNQQIHATVE-GK-----VSGLAFTSNGDLVATGWNAD----SIPVVSLVK  102 (306)
T ss_dssp             TTSCEEEEETTT--------TEEEEECTTCCEEEEEECS-SE-----EEEEEECTTSCEEEEEECTT----SCEEEEEEC
T ss_pred             CCCCEEEEeCCC--------CeEEEECCCCceEEEEeCC-CC-----ceeEEEcCCCcEEEEeccCC----cceEEEEcC
Confidence            378999987544        5899999987654444554 21     2234433 588887765432    334566543


Q ss_pred             CCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 018497          268 YGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT  320 (355)
Q Consensus       268 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~  320 (355)
                      .  .........++... ...-++.+.++.+|+.  ....+ .++.+|+.+++
T Consensus       103 ~--~g~~~~~~~~~~~~-~~~g~~~~~~~~~~v~--d~~~g-~i~~~d~~~~~  149 (306)
T 2p4o_A          103 S--DGTVETLLTLPDAI-FLNGITPLSDTQYLTA--DSYRG-AIWLIDVVQPS  149 (306)
T ss_dssp             T--TSCEEEEEECTTCS-CEEEEEESSSSEEEEE--ETTTT-EEEEEETTTTE
T ss_pred             C--CCeEEEEEeCCCcc-ccCcccccCCCcEEEE--ECCCC-eEEEEeCCCCc
Confidence            2  23344444443222 1122233445566666  42345 59999998754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=81.44  E-value=25  Score=31.23  Aligned_cols=73  Identities=7%  Similarity=-0.055  Sum_probs=45.1

Q ss_pred             CeEEEEEecCCC---CccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCc-EEEEEEeeC-CceEEEEEeCCC
Q 018497          244 GYLCVFATIPNN---TFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFIRGECRH-GGYGLLVYNPHS  318 (355)
Q Consensus       244 G~L~~v~~~~~~---~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~-~~~~l~~yd~~t  318 (355)
                      ++||+.......   ....=.||+++-    .....+.+|+... ....+.+..+|+ .++.  ... ++ .|.+||.+|
T Consensus       279 ~~lyV~~~~~~~~~~~~~~~~V~VID~----~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v--~~~~~~-~V~ViD~~t  350 (373)
T 2mad_H          279 DGIYLLTSEQSAWKLHAAAKEVTSVTG----LVGQTSSQISLGH-DVDAISVAQDGGPDLYA--LSAGTE-VLHIYDAGA  350 (373)
T ss_pred             CEEEEEeccCCcccccCCCCeEEEEEC----CCCEEEEEEECCC-CcCeEEECCCCCeEEEE--EcCCCC-eEEEEECCC
Confidence            577776543110   001235888875    3467777887654 244567778887 6666  412 44 699999999


Q ss_pred             CeEEEE
Q 018497          319 DTFKCI  324 (355)
Q Consensus       319 ~~~~~v  324 (355)
                      .+....
T Consensus       351 ~~vv~~  356 (373)
T 2mad_H          351 GDQDQS  356 (373)
T ss_pred             CCEEee
Confidence            887654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=81.41  E-value=24  Score=30.07  Aligned_cols=200  Identities=10%  Similarity=0.001  Sum_probs=98.7

Q ss_pred             eeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCc-----------EEEE-EEcCCCceeE
Q 018497          100 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDD-----------FKVV-YSLRSNSWKN  167 (355)
Q Consensus       100 s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~-----------ykvv-yss~t~~W~~  167 (355)
                      +.+|-|.+...  ....++++||.+++...+..... ....++.+++.   ..-           -.|. |+..++.-+.
T Consensus        53 ~~~g~l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~-~~~~~i~~~~d---g~l~v~~~~~~~~~~~i~~~d~~~~~~~~  126 (333)
T 2dg1_A           53 DRQGQLFLLDV--FEGNIFKINPETKEIKRPFVSHK-ANPAAIKIHKD---GRLFVCYLGDFKSTGGIFAATENGDNLQD  126 (333)
T ss_dssp             CTTSCEEEEET--TTCEEEEECTTTCCEEEEEECSS-SSEEEEEECTT---SCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             CCCCCEEEEEC--CCCEEEEEeCCCCcEEEEeeCCC-CCcceEEECCC---CcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence            45676665543  46789999999988876532111 11245555554   211           1222 5555554432


Q ss_pred             eccCCCceeeeccccccceeE--eCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CC
Q 018497          168 IAYGFPRSIEINRSHINSSVF--LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DG  244 (355)
Q Consensus       168 ~~~~~p~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G  244 (355)
                      +-.......   ...   .+.  -+|.+|+.....  ........|..+|..+++...+.-.  ..   ....++.. +|
T Consensus       127 ~~~~~~~~~---~~~---~i~~d~~g~l~v~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~--~~---~~~~i~~~~dg  193 (333)
T 2dg1_A          127 IIEDLSTAY---CID---DMVFDSKGGFYFTDFRG--YSTNPLGGVYYVSPDFRTVTPIIQN--IS---VANGIALSTDE  193 (333)
T ss_dssp             EECSSSSCC---CEE---EEEECTTSCEEEEECCC--BTTBCCEEEEEECTTSCCEEEEEEE--ES---SEEEEEECTTS
T ss_pred             EEccCccCC---ccc---ceEECCCCCEEEEeccc--cccCCCceEEEEeCCCCEEEEeecC--CC---cccceEECCCC
Confidence            210111000   000   222  367777654421  0011235799999987766554211  00   11223332 45


Q ss_pred             e-EEEEEecCCCCccEEEEEEeccCCCCCCeEEE---EEecCCC-ceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCC
Q 018497          245 Y-LCVFATIPNNTFRSYELWVMKEYGLTESWTKL---YTIEKPQ-RIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSD  319 (355)
Q Consensus       245 ~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~---~~i~~~~-~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~  319 (355)
                      + |++.....    ..+.+|.++..+  ......   ....... ....-+++..+|.+++.  ...++ .|..||++++
T Consensus       194 ~~l~v~~~~~----~~i~~~d~~~~g--~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~--~~~~~-~v~~~d~~g~  264 (333)
T 2dg1_A          194 KVLWVTETTA----NRLHRIALEDDG--VTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA--MYGQG-RVLVFNKRGY  264 (333)
T ss_dssp             SEEEEEEGGG----TEEEEEEECTTS--SSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE--EETTT-EEEEECTTSC
T ss_pred             CEEEEEeCCC----CeEEEEEecCCC--cCcccccceEEEecCCCCCCCceEECCCCCEEEE--EcCCC-EEEEECCCCC
Confidence            4 66655433    477777765322  122211   1111111 12333566677888887  52345 4999999877


Q ss_pred             eEEEEEEe
Q 018497          320 TFKCIGVH  327 (355)
Q Consensus       320 ~~~~v~~~  327 (355)
                      .++.+...
T Consensus       265 ~~~~~~~~  272 (333)
T 2dg1_A          265 PIGQILIP  272 (333)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEcC
Confidence            77776543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=80.91  E-value=26  Score=30.06  Aligned_cols=97  Identities=14%  Similarity=0.100  Sum_probs=56.7

Q ss_pred             cEEEEEEcCCceeeE-ecCCCCCCCCCCceEEEEE-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 018497          209 WLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI  286 (355)
Q Consensus       209 ~~Il~fD~~~~~~~~-i~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~  286 (355)
                      ..|..+|+.+.+... +.-. ..    ....+.-. +|++.+....+    ..+.||.++..      .....+......
T Consensus       186 g~i~iwd~~~~~~~~~~~~h-~~----~v~~l~~spd~~~l~s~s~d----g~i~iwd~~~~------~~~~~~~~h~~~  250 (321)
T 3ow8_A          186 GIINIFDIATGKLLHTLEGH-AM----PIRSLTFSPDSQLLVTASDD----GYIKIYDVQHA------NLAGTLSGHASW  250 (321)
T ss_dssp             SCEEEEETTTTEEEEEECCC-SS----CCCEEEECTTSCEEEEECTT----SCEEEEETTTC------CEEEEECCCSSC
T ss_pred             CeEEEEECCCCcEEEEEccc-CC----ceeEEEEcCCCCEEEEEcCC----CeEEEEECCCc------ceeEEEcCCCCc
Confidence            578899998776532 3221 11    11223332 46666655554    48999988741      223344322223


Q ss_pred             eEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497          287 WWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC  323 (355)
Q Consensus       287 ~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~  323 (355)
                      ...+++..+|..++.  ...++ .+.+||+++++...
T Consensus       251 v~~~~~sp~~~~l~s--~s~D~-~v~iwd~~~~~~~~  284 (321)
T 3ow8_A          251 VLNVAFCPDDTHFVS--SSSDK-SVKVWDVGTRTCVH  284 (321)
T ss_dssp             EEEEEECTTSSEEEE--EETTS-CEEEEETTTTEEEE
T ss_pred             eEEEEECCCCCEEEE--EeCCC-cEEEEeCCCCEEEE
Confidence            455667777877776  43667 49999999887544

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=80.81  E-value=29  Score=30.50  Aligned_cols=95  Identities=15%  Similarity=0.111  Sum_probs=53.8

Q ss_pred             EEEEEEcCCce--eeEecCCCCCCCCCCceEEEEE--CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 018497          210 LIVSFDFAKEI--FQTVMMPYDLSTDDADKYLNVF--DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR  285 (355)
Q Consensus       210 ~Il~fD~~~~~--~~~i~lP~~~~~~~~~~~L~~~--~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~  285 (355)
                      .|..+|+.+..  ...+.   .. .......+.-.  +|++.+....+    ..+.+|.++.      ...+..+.....
T Consensus       241 ~i~~~d~~~~~~~~~~~~---~~-~~~~v~~~~~s~~~~~~l~s~~~d----g~v~~wd~~~------~~~~~~~~~~~~  306 (416)
T 2pm9_A          241 SILIWDLRNANTPLQTLN---QG-HQKGILSLDWCHQDEHLLLSSGRD----NTVLLWNPES------AEQLSQFPARGN  306 (416)
T ss_dssp             CCCEEETTSTTSCSBCCC---SC-CSSCEEEEEECSSCSSCEEEEESS----SEEEEECSSS------CCEEEEEECSSS
T ss_pred             eEEEEeCCCCCCCcEEee---cC-ccCceeEEEeCCCCCCeEEEEeCC----CCEEEeeCCC------CccceeecCCCC
Confidence            68889988743  11111   00 11112233332  56776666665    4899998764      133444433222


Q ss_pred             eeEeEEEeeCC-cEEEEEEeeCCceEEEEEeCCCCeE
Q 018497          286 IWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSDTF  321 (355)
Q Consensus       286 ~~~~~~~~~~g-~i~~~~~~~~~~~~l~~yd~~t~~~  321 (355)
                      ....+.+..++ .+++.  ...++ .+.+||+++.+.
T Consensus       307 ~v~~~~~s~~~~~~l~s--~~~d~-~i~iw~~~~~~~  340 (416)
T 2pm9_A          307 WCFKTKFAPEAPDLFAC--ASFDN-KIEVQTLQNLTN  340 (416)
T ss_dssp             CCCCEEECTTCTTEEEE--CCSSS-EEEEEESCCCCC
T ss_pred             ceEEEEECCCCCCEEEE--EecCC-cEEEEEccCCCC
Confidence            24446667777 67777  53566 599999988663

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=80.10  E-value=29  Score=30.06  Aligned_cols=108  Identities=12%  Similarity=0.160  Sum_probs=60.2

Q ss_pred             cEEEEEEcCCceeeEe-cCCCCCCCC-CCceEEEEE-CCeEEEEEecC-CCCccEEEEEEeccCCCCCCeEEEEEecCCC
Q 018497          209 WLIVSFDFAKEIFQTV-MMPYDLSTD-DADKYLNVF-DGYLCVFATIP-NNTFRSYELWVMKEYGLTESWTKLYTIEKPQ  284 (355)
Q Consensus       209 ~~Il~fD~~~~~~~~i-~lP~~~~~~-~~~~~L~~~-~G~L~~v~~~~-~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~  284 (355)
                      ..|..||+.+.++..+ .++ ..... .....+... +|+..++.... .   ..+.||.++..  ...+..+..++...
T Consensus       233 ~~v~v~~~~~g~~~~~~~~~-~~~~~~~~~~~i~~spdg~~l~v~~~~~~---~~i~v~~~~~~--~g~~~~~~~~~~g~  306 (361)
T 3scy_A          233 GTVIAFRYADGMLDEIQTVA-ADTVNAQGSGDIHLSPDGKYLYASNRLKA---DGVAIFKVDET--NGTLTKVGYQLTGI  306 (361)
T ss_dssp             CEEEEEEEETTEEEEEEEEE-SCSSCCCCEEEEEECTTSSEEEEEECSSS---CEEEEEEECTT--TCCEEEEEEEECSS
T ss_pred             CeEEEEEecCCceEEeEEEe-cCCCCCCCcccEEECCCCCEEEEECCCCC---CEEEEEEEcCC--CCcEEEeeEecCCC
Confidence            5799999988877554 222 11111 112233333 47644444433 3   58999999742  24566666665421


Q ss_pred             ceeEeEEEeeCCcEEEEEEeeCCce-EEEEEeCCCCeEEEE
Q 018497          285 RIWWPLGFTERGKIFIRGECRHGGY-GLLVYNPHSDTFKCI  324 (355)
Q Consensus       285 ~~~~~~~~~~~g~i~~~~~~~~~~~-~l~~yd~~t~~~~~v  324 (355)
                       ...-+++..+|+.++.. ...++. .++.+|.++++++.+
T Consensus       307 -~~~~~~~spdg~~l~~~-~~~~~~v~v~~~d~~~g~~~~~  345 (361)
T 3scy_A          307 -HPRNFIITPNGKYLLVA-CRDTNVIQIFERDQATGLLTDI  345 (361)
T ss_dssp             -CCCEEEECTTSCEEEEE-ETTTTEEEEEEECTTTCCEEEC
T ss_pred             -CCceEEECCCCCEEEEE-ECCCCCEEEEEEECCCCcEeec
Confidence             23446677888644441 313342 344478889988776

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=80.08  E-value=8.4  Score=37.82  Aligned_cols=115  Identities=12%  Similarity=0.143  Sum_probs=57.2

Q ss_pred             eeEe---CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEE--ECCeEEEEEecCCCCccEE
Q 018497          186 SVFL---NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNV--FDGYLCVFATIPNNTFRSY  260 (355)
Q Consensus       186 ~v~~---~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~--~~G~L~~v~~~~~~~~~~l  260 (355)
                      ++.+   +|.|||.....       ...|..+|+.......+-.  ....  ..-.|+.  .+|+||++....    .. 
T Consensus       500 giavDp~~g~ly~td~~~-------~~~I~~~~~dG~~~~~l~~--~~l~--~PnGlavd~~~~~LY~aD~~~----~~-  563 (699)
T 1n7d_A          500 AIVVDPVHGFMYWTDWGT-------PAKIKKGGLNGVDIYSLVT--ENIQ--WPNGITLDLLSGRLYWVDSKL----HS-  563 (699)
T ss_dssp             CEECCSSSSCCEECCCSS-------SCCEEBCCSSSCCCCEESC--SSCS--SCCCEEECTTTCCEEEEETTT----TE-
T ss_pred             eEEEccCCCcEEEcccCC-------CCeEEEEeCCCCCeeEEEe--CCCC--CccEEEEeccCCEEEEEecCC----Ce-
Confidence            4554   68999976431       2478888887554443310  0110  1112333  358898887543    24 


Q ss_pred             EEEEeccCCCCCCeEEEEEecCCCceeEeEEEee-CCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497          261 ELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTE-RGKIFIRGECRHGGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       261 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v  324 (355)
                       |++++-.+. . -..+  +........|.+++. .+.||+.  ....+ .|..+|..+++...+
T Consensus       564 -I~~~d~dG~-~-~~~~--~~~~~~~~~P~glavd~~~lywt--d~~~~-~V~~~d~~~G~~~~~  620 (699)
T 1n7d_A          564 -ISSIDVNGG-N-RKTI--LEDEKRLAHPFSLAVFEDKVFWT--DIINE-AIFSANRLTGSDVNL  620 (699)
T ss_dssp             -EEEECSSSS-C-CEEE--CCCSSSCSSCCCCEEETTEEEEE--CSTTT-CEEEEETTTEEEEEC
T ss_pred             -EEEEccCCC-c-eEEE--EecCCcCCCceEeEEECCEEEEE--eCCCC-eEEEEEccCCCceEE
Confidence             444443221 1 1111  111111123444332 3467777  52334 599999988775443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	355
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	5e-08
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	0.001
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.003
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.003

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (111), Expect = 5e-08
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 7  RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTF 44
           LP+++++ IF  L +  L ++  VCK W  L + ++ 
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 11/70 (15%), Positives = 23/70 (32%)

Query: 7  RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGIS 66
           LP+++ + +   LE K+L +    C+ W  L            +   +    + R  + 
Sbjct: 21 LLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVI 80

Query: 67 PSYLGFYSTK 76
                   K
Sbjct: 81 KPGFIHSPWK 90

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 7  RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRH 63
           LP ++ + IF  L+ +++     V ++WN ++   T +   L  S     P  F  
Sbjct: 8  SLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNS 64

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 7  RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTF 44
          R  + +  +I   L+ K+L     VCK W  + +    
Sbjct: 17 RGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGML 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	355
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.14
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.92
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.59
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.58
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.52
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.22
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.07
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.5
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	94.81
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	92.74
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	89.22
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	88.82
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	87.35
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	87.11
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	86.99
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	85.84
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	85.75
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	85.68
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	85.52
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.66
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	81.48
d1tbga_	340	beta1-subunit of the signal-transducing G protein	81.42
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	80.16

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.4e-12  Score=77.36  Aligned_cols=39  Identities=28%  Similarity=0.639  Sum_probs=36.7

Q ss_pred             CCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCChHH
Q 018497            6 FRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTF   44 (355)
Q Consensus         6 ~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F   44 (355)
                      ..||+|++.+||++||+++++|+++|||+|+.+++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999998753

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.1e-08  Score=87.80  Aligned_cols=232  Identities=15%  Similarity=0.161  Sum_probs=141.3

Q ss_pred             eeeeccCCcccccCCC-CCCCCCCCCeEEEeeeCceEEEeecC-------CCCceEEEEcCCcccEEecCCCCCCCceeE
Q 018497           70 LGFYSTKCKEFEDLCD-PPFRTQLADLDVVGSCNGVLCFCSNG-------SDRSLIYLWNPLIKKYMTLPRPSLNPRYLG  141 (355)
Q Consensus        70 ~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~s~~GLl~l~~~~-------~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~  141 (355)
                      .++|++....|..++. |...   ..+. ....+|-+++..+.       .....+.++||.|.+|..+|+++..+...+
T Consensus        21 ~~~yd~~t~~W~~~~~~p~~R---~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          21 LEAYNPSNGTWLRLADLQVPR---SGLA-GCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             EEEEETTTTEEEECCCCSSCC---BSCE-EEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             EEEEECCCCeEEECCCCCCcc---ceeE-EEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            4578888888877642 2211   1222 33335555443210       124578999999999999999887653311


Q ss_pred             EE-----------EecCCCCCCcEEEEEEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcE
Q 018497          142 FG-----------VNSVSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWL  210 (355)
Q Consensus       142 ~g-----------~d~~~~~~~~ykvvyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~  210 (355)
                      ..           .+.. ....+ ...|+..++.|...+ ..+.......     .+..++.+|.+.+..   .......
T Consensus        97 ~~~~~~~i~~~gg~~~~-~~~~~-~~~~~~~~~~~~~~~-~~~~~r~~~~-----~~~~~~~~~~~GG~~---~~~~~~~  165 (288)
T d1zgka1          97 VGVIDGHIYAVGGSHGC-IHHNS-VERYEPERDEWHLVA-PMLTRRIGVG-----VAVLNRLLYAVGGFD---GTNRLNS  165 (288)
T ss_dssp             EEEETTEEEEECCEETT-EECCC-EEEEETTTTEEEECC-CCSSCCBSCE-----EEEETTEEEEECCBC---SSCBCCC
T ss_pred             ccccceeeEEecceecc-cccce-eeeeccccCcccccc-ccccccccce-----eeeeeecceEecCcc---cccccce
Confidence            11           1111 00001 111999999999887 5554433222     677899988876553   2334456


Q ss_pred             EEEEEcCCceeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeE
Q 018497          211 IVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPL  290 (355)
Q Consensus       211 Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~  290 (355)
                      +..||+.+++|.....+....   .....+..++++++++..... ...-..|..+..  ...|..+..++...  ....
T Consensus       166 ~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~i~GG~~~~-~~~~~~~~~~~~--~~~~~~~~~~p~~r--~~~~  237 (288)
T d1zgka1         166 AECYYPERNEWRMITAMNTIR---SGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVE--TETWTFVAPMKHRR--SALG  237 (288)
T ss_dssp             EEEEETTTTEEEECCCCSSCC---BSCEEEEETTEEEEECCBCSS-SBCCCEEEEETT--TTEEEECCCCSSCC--BSCE
T ss_pred             EEEeecccccccccccccccc---ccccccceeeeEEEecCcccc-ccccceeeeeec--ceeeecccCccCcc--cceE
Confidence            899999999999885441322   345678889999998876542 122345555432  35687765555443  2223


Q ss_pred             EEeeCCcEEEEEEeeCCc----eEEEEEeCCCCeEEEEEE
Q 018497          291 GFTERGKIFIRGECRHGG----YGLLVYNPHSDTFKCIGV  326 (355)
Q Consensus       291 ~~~~~g~i~~~~~~~~~~----~~l~~yd~~t~~~~~v~~  326 (355)
                      ++..+|+||+.  ...+.    ..+.+||+++++|+.+..
T Consensus       238 ~~~~~~~l~v~--GG~~~~~~~~~v~~yd~~~~~W~~~~~  275 (288)
T d1zgka1         238 ITVHQGRIYVL--GGYDGHTFLDSVECYDPDTDTWSEVTR  275 (288)
T ss_dssp             EEEETTEEEEE--CCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred             EEEECCEEEEE--ecCCCCeecceEEEEECCCCEEEECCC
Confidence            33457889998  31111    168999999999999964

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=6.9e-08  Score=82.65  Aligned_cols=191  Identities=12%  Similarity=0.102  Sum_probs=119.2

Q ss_pred             CceEEEEcCCcccEEecCCCCCCCce----------eEEE-EecCCCCCCcE----EEE-EEcCCCceeEeccCCCceee
Q 018497          114 RSLIYLWNPLIKKYMTLPRPSLNPRY----------LGFG-VNSVSGHLDDF----KVV-YSLRSNSWKNIAYGFPRSIE  177 (355)
Q Consensus       114 ~~~~~V~NP~T~~~~~LP~~~~~~~~----------~~~g-~d~~~~~~~~y----kvv-yss~t~~W~~~~~~~p~~~~  177 (355)
                      -..+.++||.|++|..+|+++..+..          +.+| ....   ....    .+. ||..+++|+.++ .+|....
T Consensus        18 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~~~yd~~~~~w~~~~-~~p~~r~   93 (288)
T d1zgka1          18 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNS---PDGNTDSSALDCYNPMTNQWSPCA-PMSVPRN   93 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEE---TTEEEECCCEEEEETTTTEEEECC-CCSSCCB
T ss_pred             CceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccC---CCCccccchhhhcccccccccccc-cccceec
Confidence            34678999999999999988776532          1121 1111   1111    111 999999999998 7776544


Q ss_pred             eccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEec-CCCCCCCCCCceEEEEECCeEEEEEecCCCC
Q 018497          178 INRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM-MPYDLSTDDADKYLNVFDGYLCVFATIPNNT  256 (355)
Q Consensus       178 ~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~-lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~  256 (355)
                      ...     ++.++|++|.+....   +.........+|+.+++|...+ .| ..+   .....+..++++++++..... 
T Consensus        94 ~~~-----~~~~~~~i~~~gg~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~r---~~~~~~~~~~~~~~~GG~~~~-  160 (288)
T d1zgka1          94 RIG-----VGVIDGHIYAVGGSH---GCIHHNSVERYEPERDEWHLVAPML-TRR---IGVGVAVLNRLLYAVGGFDGT-  160 (288)
T ss_dssp             TCE-----EEEETTEEEEECCEE---TTEECCCEEEEETTTTEEEECCCCS-SCC---BSCEEEEETTEEEEECCBCSS-
T ss_pred             cee-----ccccceeeEEeccee---cccccceeeeeccccCccccccccc-ccc---ccceeeeeeecceEecCcccc-
Confidence            332     778899999987654   1233455788999999998873 33 333   445677889999998766431 


Q ss_pred             ccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCc--eEEEEEeCCCCeEEEEE
Q 018497          257 FRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG--YGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       257 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~--~~l~~yd~~t~~~~~v~  325 (355)
                      ...-.++.++.  ....|......+...  ........++.|++.+-.....  .....||+.+++|+.+.
T Consensus       161 ~~~~~~~~~d~--~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~  227 (288)
T d1zgka1         161 NRLNSAECYYP--ERNEWRMITAMNTIR--SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  227 (288)
T ss_dssp             CBCCCEEEEET--TTTEEEECCCCSSCC--BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             cccceEEEeec--ccccccccccccccc--ccccccceeeeEEEecCccccccccceeeeeecceeeeccc
Confidence            11223455543  235677654443332  2223334567788872110111  16899999999999874

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.59  E-value=3.9e-07  Score=81.21  Aligned_cols=240  Identities=13%  Similarity=0.107  Sum_probs=127.3

Q ss_pred             eeeccCCcccccCCCCCCCCCCCCeEEEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEec----
Q 018497           71 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNS----  146 (355)
Q Consensus        71 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~----  146 (355)
                      .+|++..+.|........+............+|.+.+... .......++||.|++|..+|.++..+.+......+    
T Consensus        55 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v  133 (387)
T d1k3ia3          55 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGG-NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV  133 (387)
T ss_dssp             EEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECS-SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE
T ss_pred             EEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeec-CCCcceeEecCccCcccccccccccccccceeeecCCce
Confidence            3688877777654322121111112234445787776653 23457889999999999999988775432222111    


Q ss_pred             --------CCCCCCcEEEEEEcCCCceeEeccCCCceeeecc---------ccccceeEeCceEEEEEeeeccCCCCCCc
Q 018497          147 --------VSGHLDDFKVVYSLRSNSWKNIAYGFPRSIEINR---------SHINSSVFLNGSVHWCARFSCYHDNSCPW  209 (355)
Q Consensus       147 --------~~~~~~~ykvvyss~t~~W~~~~~~~p~~~~~~~---------~~~~~~v~~~G~lyw~~~~~~~~~~~~~~  209 (355)
                              .....++..+ |+..+++|+.++ .++.......         .........+|.+|......        .
T Consensus       134 ~v~GG~~~~~~~~~~v~~-yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~--------~  203 (387)
T d1k3ia3         134 FTIGGSWSGGVFEKNGEV-YSPSSKTWTSLP-NAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPST--------A  203 (387)
T ss_dssp             EEECCCCCSSSCCCCEEE-EETTTTEEEEET-TSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSS--------E
T ss_pred             eeeccccccccccceeee-ecCCCCceeecC-CCcccccccccccceeeccceeEEEEeCCCCEEEecCcC--------C
Confidence                    0000111111 999999999887 4432211100         00000112256666655433        5


Q ss_pred             EEEEEEcCCceeeEe-cCCCCCCC------CCCceEEEEECCeEEEEEecCCC----CccEEEEEEeccCC-CCCCeEEE
Q 018497          210 LIVSFDFAKEIFQTV-MMPYDLST------DDADKYLNVFDGYLCVFATIPNN----TFRSYELWVMKEYG-LTESWTKL  277 (355)
Q Consensus       210 ~Il~fD~~~~~~~~i-~lP~~~~~------~~~~~~L~~~~G~L~~v~~~~~~----~~~~l~iW~l~~~~-~~~~W~~~  277 (355)
                      .+..+|+.+..|... ..| ....      ......+...+|++++++.....    ......+..+..+. ....|...
T Consensus       204 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (387)
T d1k3ia3         204 MNWYYTSGSGDVKSAGKRQ-SNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS  282 (387)
T ss_dssp             EEEEECSTTCEEEEEEECE-ETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT
T ss_pred             cEEecCcccCcEeeccccc-cCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeec
Confidence            788899999999776 333 2221      11223344457899988875431    11233344444332 11234333


Q ss_pred             EEecCCCceeEeEEEeeCCcEEEEEEeeC-------Cc---eEEEEEeCCCCeEEEEE
Q 018497          278 YTIEKPQRIWWPLGFTERGKIFIRGECRH-------GG---YGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       278 ~~i~~~~~~~~~~~~~~~g~i~~~~~~~~-------~~---~~l~~yd~~t~~~~~v~  325 (355)
                      ..++... ......+..+|+||+.  ...       +.   ..+..||+++++|+.+.
T Consensus       283 ~~~p~~r-~~~~~~~~~dg~i~v~--GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~  337 (387)
T d1k3ia3         283 NGLYFAR-TFHTSVVLPDGSTFIT--GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  337 (387)
T ss_dssp             TCCSSCC-BSCEEEECTTSCEEEE--CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             ccccccc-ccceeeeccCCeEEEE--CCcccCccCCCCcEeceEEEEECCCCeEEECC
Confidence            3333332 2223334457889888  311       10   14678999999999884

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.8e-08  Score=72.67  Aligned_cols=47  Identities=19%  Similarity=0.313  Sum_probs=41.7

Q ss_pred             CCCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCChHHHHHHHh
Q 018497            4 SSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLN   50 (355)
Q Consensus         4 ~~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~~~~~   50 (355)
                      ..+.||+||+..||+.|++++++++++|||+|+.++.++.+=+....
T Consensus        18 ~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~   64 (102)
T d2ovrb1          18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (102)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            35689999999999999999999999999999999999887555443

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=1.8e-08  Score=72.30  Aligned_cols=39  Identities=23%  Similarity=0.510  Sum_probs=35.5

Q ss_pred             CCCCHHHHHHHHhcCCcccchhhcccchhhHhhhC-ChHH
Q 018497            6 FRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLT-SKTF   44 (355)
Q Consensus         6 ~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~-~~~F   44 (355)
                      +.||+||+++||+.|+++++++++.|||+|+.+++ ++.+
T Consensus         7 ~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~L   46 (100)
T d1nexb1           7 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   46 (100)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHH
T ss_pred             hhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            57999999999999999999999999999999985 5653

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.5e-07  Score=69.53  Aligned_cols=41  Identities=20%  Similarity=0.336  Sum_probs=36.2

Q ss_pred             CCHHHHHHHHhcCCcccchhhcccchhhHhhhCChHHHHHH
Q 018497            8 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIH   48 (355)
Q Consensus         8 LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~~~   48 (355)
                      |+|||+..||+.|++++|+++.+|||+|+.+++++.+=+..
T Consensus        18 l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~   58 (118)
T d1p22a1          18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL   58 (118)
T ss_dssp             TCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred             ChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            34699999999999999999999999999999987775543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.07  E-value=7.1e-06  Score=72.73  Aligned_cols=183  Identities=12%  Similarity=0.039  Sum_probs=105.3

Q ss_pred             cCCcccEEecCCCCCCCce----------eEEE-EecCC--CCCCcEE--EEEEcCCCceeEeccCCC--ceeeeccccc
Q 018497          121 NPLIKKYMTLPRPSLNPRY----------LGFG-VNSVS--GHLDDFK--VVYSLRSNSWKNIAYGFP--RSIEINRSHI  183 (355)
Q Consensus       121 NP~T~~~~~LP~~~~~~~~----------~~~g-~d~~~--~~~~~yk--vvyss~t~~W~~~~~~~p--~~~~~~~~~~  183 (355)
                      .|.+++|...++.+..+..          +.|| +++..  .......  -+||..+++|+... .++  ...... .. 
T Consensus         5 ~p~~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~-~~~~~~~~~~~-~~-   81 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT-VTVTKHDMFCP-GI-   81 (387)
T ss_dssp             CTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE-EEECSCCCSSC-EE-
T ss_pred             CCCCCccCCcCCCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC-CCCCCccccee-EE-
Confidence            5889999887776654321          3343 22220  0011222  23999999998765 222  222111 11 


Q ss_pred             cceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEE-CCeEEEEEecCCC--CccE
Q 018497          184 NSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF-DGYLCVFATIPNN--TFRS  259 (355)
Q Consensus       184 ~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~--~~~~  259 (355)
                        .+..+|++|+.+...       ...+..||+.+++|+.+ .+| ..+   .....+.. +|+++++......  ....
T Consensus        82 --~~~~~g~i~v~Gg~~-------~~~~~~yd~~~~~w~~~~~~~-~~r---~~~~~~~~~dG~v~v~GG~~~~~~~~~~  148 (387)
T d1k3ia3          82 --SMDGNGQIVVTGGND-------AKKTSLYDSSSDSWIPGPDMQ-VAR---GYQSSATMSDGRVFTIGGSWSGGVFEKN  148 (387)
T ss_dssp             --EECTTSCEEEECSSS-------TTCEEEEEGGGTEEEECCCCS-SCC---SSCEEEECTTSCEEEECCCCCSSSCCCC
T ss_pred             --EEecCCcEEEeecCC-------CcceeEecCccCccccccccc-ccc---cccceeeecCCceeeeccccccccccce
Confidence              456799999987654       35678999999999987 555 433   23344444 6899999875431  1234


Q ss_pred             EEEEEeccCCCCCCeEEEEEecCCCc------------eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEE
Q 018497          260 YELWVMKEYGLTESWTKLYTIEKPQR------------IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGV  326 (355)
Q Consensus       260 l~iW~l~~~~~~~~W~~~~~i~~~~~------------~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~  326 (355)
                      +++|...    ...|.....+.....            ....+....+|+++..  ..... .+..||..+..|.....
T Consensus       149 v~~yd~~----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~--g~~~~-~~~~~~~~~~~~~~~~~  220 (387)
T d1k3ia3         149 GEVYSPS----SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQA--GPSTA-MNWYYTSGSGDVKSAGK  220 (387)
T ss_dssp             EEEEETT----TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEEC--CSSSE-EEEEECSTTCEEEEEEE
T ss_pred             eeeecCC----CCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEe--cCcCC-cEEecCcccCcEeeccc
Confidence            4555443    367987644322211            1111223345677776  42334 58899999999987643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.50  E-value=0.52  Score=38.83  Aligned_cols=200  Identities=11%  Similarity=-0.031  Sum_probs=99.1

Q ss_pred             eeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcE------EEE-EEcCCCceeEeccC
Q 018497           99 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDF------KVV-YSLRSNSWKNIAYG  171 (355)
Q Consensus        99 ~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~y------kvv-yss~t~~W~~~~~~  171 (355)
                      ...+|-|.+.+-  ...+++.+||.|++....+.+...   .+++.++.   . .+      .++ |+..+++.+.+. .
T Consensus        26 d~~~~~l~wvDi--~~~~I~r~d~~~g~~~~~~~~~~~---~~i~~~~d---g-~l~va~~~gl~~~d~~tg~~~~l~-~   95 (295)
T d2ghsa1          26 DPASGTAWWFNI--LERELHELHLASGRKTVHALPFMG---SALAKISD---S-KQLIASDDGLFLRDTATGVLTLHA-E   95 (295)
T ss_dssp             ETTTTEEEEEEG--GGTEEEEEETTTTEEEEEECSSCE---EEEEEEET---T-EEEEEETTEEEEEETTTCCEEEEE-C
T ss_pred             ECCCCEEEEEEC--CCCEEEEEECCCCeEEEEECCCCc---EEEEEecC---C-CEEEEEeCccEEeecccceeeEEe-e
Confidence            445666655553  467899999999887765433221   12333332   1 11      222 999999998776 3


Q ss_pred             CCceeeeccccccce-eEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CC-eEEE
Q 018497          172 FPRSIEINRSHINSS-VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DG-YLCV  248 (355)
Q Consensus       172 ~p~~~~~~~~~~~~~-v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G-~L~~  248 (355)
                      ..........+  .. +--+|.+|+-....  ........+  |.+..++...+.-. -..    .-.++.. ++ .|++
T Consensus        96 ~~~~~~~~~~n--d~~vd~~G~iw~~~~~~--~~~~~~g~l--~~~~~g~~~~~~~~-~~~----~Ng~~~s~d~~~l~~  164 (295)
T d2ghsa1          96 LESDLPGNRSN--DGRMHPSGALWIGTMGR--KAETGAGSI--YHVAKGKVTKLFAD-ISI----PNSICFSPDGTTGYF  164 (295)
T ss_dssp             SSTTCTTEEEE--EEEECTTSCEEEEEEET--TCCTTCEEE--EEEETTEEEEEEEE-ESS----EEEEEECTTSCEEEE
T ss_pred             eecCCCcccce--eeEECCCCCEEEEeccc--cccccceeE--eeecCCcEEEEeec-cCC----cceeeecCCCceEEE
Confidence            32221111111  02 33477776654433  111122233  34445555544211 001    1122222 23 4666


Q ss_pred             EEecCCCCccEEEEEEeccCCCCCCe----EEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497          249 FATIPNNTFRSYELWVMKEYGLTESW----TKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       249 v~~~~~~~~~~l~iW~l~~~~~~~~W----~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v  324 (355)
                      +....+    .  ||..+-+......    .....++-......-+++..+|.|++.  ....+ .|..||++.+.+..+
T Consensus       165 ~dt~~~----~--I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva--~~~~g-~V~~~dp~G~~~~~i  235 (295)
T d2ghsa1         165 VDTKVN----R--LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEG-AVDRYDTDGNHIARY  235 (295)
T ss_dssp             EETTTC----E--EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE--EETTT-EEEEECTTCCEEEEE
T ss_pred             eecccc----e--eeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEee--eeCCC-ceEEecCCCcEeeEe
Confidence            655432    4  4444322111111    222222222212333555677889988  63455 599999999999999


Q ss_pred             EEec
Q 018497          325 GVHL  328 (355)
Q Consensus       325 ~~~~  328 (355)
                      .++.
T Consensus       236 ~lP~  239 (295)
T d2ghsa1         236 EVPG  239 (295)
T ss_dssp             ECSC
T ss_pred             cCCC
Confidence            8764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.81  E-value=0.89  Score=37.72  Aligned_cols=201  Identities=12%  Similarity=0.009  Sum_probs=102.7

Q ss_pred             eCceEEEeecCCCCceEEEEcCCcccEEecC-CCCCCCceeEEEEecCCCCCCcE-----------EEE-EEcCCCceeE
Q 018497          101 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLP-RPSLNPRYLGFGVNSVSGHLDDF-----------KVV-YSLRSNSWKN  167 (355)
Q Consensus       101 ~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP-~~~~~~~~~~~g~d~~~~~~~~y-----------kvv-yss~t~~W~~  167 (355)
                      .+|-|.+.+.  ...+++.+||.+++..... +...  ...++.+++.   .+-|           .++ ++..++....
T Consensus        49 ~~G~Ly~~D~--~~g~I~ri~p~g~~~~~~~~~~~~--~p~gla~~~d---G~l~va~~~~~~~~~~i~~~~~~~~~~~~  121 (319)
T d2dg1a1          49 RQGQLFLLDV--FEGNIFKINPETKEIKRPFVSHKA--NPAAIKIHKD---GRLFVCYLGDFKSTGGIFAATENGDNLQD  121 (319)
T ss_dssp             TTSCEEEEET--TTCEEEEECTTTCCEEEEEECSSS--SEEEEEECTT---SCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             CCCCEEEEEC--CCCEEEEEECCCCeEEEEEeCCCC--CeeEEEECCC---CCEEEEecCCCccceeEEEEcCCCceeee
Confidence            4566666553  5678899999998655432 2111  1245666654   3212           111 3444443332


Q ss_pred             eccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CC-e
Q 018497          168 IAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DG-Y  245 (355)
Q Consensus       168 ~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G-~  245 (355)
                      ..............    .+--+|.+|+-....  ........+..+|++....+.+.-+ -.    ..--++.. +| .
T Consensus       122 ~~~~~~~~~~~nd~----~~d~~G~l~vtd~~~--~~~~~~g~v~~~~~dg~~~~~~~~~-~~----~pnGia~s~dg~~  190 (319)
T d2dg1a1         122 IIEDLSTAYCIDDM----VFDSKGGFYFTDFRG--YSTNPLGGVYYVSPDFRTVTPIIQN-IS----VANGIALSTDEKV  190 (319)
T ss_dssp             EECSSSSCCCEEEE----EECTTSCEEEEECCC--BTTBCCEEEEEECTTSCCEEEEEEE-ES----SEEEEEECTTSSE
T ss_pred             eccCCCcccCCcce----eEEeccceeeccccc--ccccCcceeEEEecccceeEEEeec-cc----eeeeeeeccccce
Confidence            22011111111100    234578888765433  1123345788899887766654211 00    01123332 34 5


Q ss_pred             EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEe--cCCCceeEe--EEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497          246 LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI--EKPQRIWWP--LGFTERGKIFIRGECRHGGYGLLVYNPHSDTF  321 (355)
Q Consensus       246 L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i--~~~~~~~~~--~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~  321 (355)
                      |+++....+    ++..+.++..+ ...+......  .... ...|  +++..+|.|++.  ....+ .|..||++.+.+
T Consensus       191 lyvad~~~~----~I~~~d~~~~g-~~~~~~~~~~~~~~~~-~~~PdGl~vD~~G~l~Va--~~~~g-~V~~~~p~G~~l  261 (319)
T d2dg1a1         191 LWVTETTAN----RLHRIALEDDG-VTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVA--MYGQG-RVLVFNKRGYPI  261 (319)
T ss_dssp             EEEEEGGGT----EEEEEEECTTS-SSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEE--EETTT-EEEEECTTSCEE
T ss_pred             EEEecccCC----ceEEEEEcCCC-ceeccccceeeeccCC-ccceeeeeEcCCCCEEEE--EcCCC-EEEEECCCCcEE
Confidence            777766543    55555554332 1223222222  1111 1234  556678899998  63455 599999999889


Q ss_pred             EEEEEec
Q 018497          322 KCIGVHL  328 (355)
Q Consensus       322 ~~v~~~~  328 (355)
                      .+|.+..
T Consensus       262 ~~i~~P~  268 (319)
T d2dg1a1         262 GQILIPG  268 (319)
T ss_dssp             EEEECTT
T ss_pred             EEEeCCC
Confidence            9998764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.74  E-value=2.1  Score=34.92  Aligned_cols=97  Identities=12%  Similarity=0.031  Sum_probs=57.9

Q ss_pred             cEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE--CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-
Q 018497          209 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF--DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-  285 (355)
Q Consensus       209 ~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~--~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-  285 (355)
                      ..|..||+.+.+.......  ..   ....-+..  +|++.++...+    ..+.+|.+..      ..+...+..... 
T Consensus       169 ~~i~i~d~~~~~~~~~~~~--~~---~~i~~v~~~p~~~~l~~~~~d----~~v~~~d~~~------~~~~~~~~~~~~~  233 (311)
T d1nr0a1         169 NTVAIFEGPPFKFKSTFGE--HT---KFVHSVRYNPDGSLFASTGGD----GTIVLYNGVD------GTKTGVFEDDSLK  233 (311)
T ss_dssp             SCEEEEETTTBEEEEEECC--CS---SCEEEEEECTTSSEEEEEETT----SCEEEEETTT------CCEEEECBCTTSS
T ss_pred             ccccccccccccccccccc--cc---ccccccccCcccccccccccc----cccccccccc------ccccccccccccc
Confidence            4688899998765444211  11   12222223  46776666655    4899998764      233344432221 


Q ss_pred             ------eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497          286 ------IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC  323 (355)
Q Consensus       286 ------~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~  323 (355)
                            ....+++..+|..++.  ...++ .+.+||.++++..+
T Consensus       234 ~~~h~~~V~~~~~s~~~~~l~t--gs~Dg-~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         234 NVAHSGSVFGLTWSPDGTKIAS--ASADK-TIKIWNVATLKVEK  274 (311)
T ss_dssp             SCSSSSCEEEEEECTTSSEEEE--EETTS-EEEEEETTTTEEEE
T ss_pred             cccccccccccccCCCCCEEEE--EeCCC-eEEEEECCCCcEEE
Confidence                  2445666777877777  43667 59999999998644

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=89.22  E-value=4.6  Score=32.58  Aligned_cols=117  Identities=9%  Similarity=-0.061  Sum_probs=70.4

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEE-EECCeEEEEEecCCCCccEEEEEE
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLN-VFDGYLCVFATIPNNTFRSYELWV  264 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~-~~~G~L~~v~~~~~~~~~~l~iW~  264 (355)
                      .+-=||.||+.....        ..|..+|+..+.-.....+ ..     ...++ .-+|+|+++....+    .+.+|.
T Consensus        34 Av~pdG~l~vt~~~~--------~~I~~i~p~g~~~~~~~~~-~~-----~~gla~~~dG~l~v~~~~~~----~~~~~~   95 (302)
T d2p4oa1          34 ASAPDGTIFVTNHEV--------GEIVSITPDGNQQIHATVE-GK-----VSGLAFTSNGDLVATGWNAD----SIPVVS   95 (302)
T ss_dssp             EECTTSCEEEEETTT--------TEEEEECTTCCEEEEEECS-SE-----EEEEEECTTSCEEEEEECTT----SCEEEE
T ss_pred             EECCCCCEEEEeCCC--------CEEEEEeCCCCEEEEEcCC-CC-----cceEEEcCCCCeEEEecCCc----eEEEEE
Confidence            445589998866544        6899999987755544555 32     12333 33589888877654    555555


Q ss_pred             eccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEE
Q 018497          265 MKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGV  326 (355)
Q Consensus       265 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~  326 (355)
                      ++..  ...-......+... ...-+.+..+|.+|+.  ..... .++.+|++++.......
T Consensus        96 ~~~~--~~~~~~~~~~~~~~-~~n~i~~~~~g~~~v~--~~~~~-~i~~~~~~~~~~~~~~~  151 (302)
T d2p4oa1          96 LVKS--DGTVETLLTLPDAI-FLNGITPLSDTQYLTA--DSYRG-AIWLIDVVQPSGSIWLE  151 (302)
T ss_dssp             EECT--TSCEEEEEECTTCS-CEEEEEESSSSEEEEE--ETTTT-EEEEEETTTTEEEEEEE
T ss_pred             eccc--ccceeeccccCCcc-ccceeEEccCCCEEee--ccccc-cceeeeccCCcceeEec
Confidence            5432  12223333333222 2334555677888887  52445 59999999998766544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.82  E-value=4.7  Score=32.13  Aligned_cols=197  Identities=10%  Similarity=0.069  Sum_probs=102.7

Q ss_pred             EEEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCC----ceeEEEEecCCCCCCcEEEE----------EEcC
Q 018497           96 DVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP----RYLGFGVNSVSGHLDDFKVV----------YSLR  161 (355)
Q Consensus        96 ~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~----~~~~~g~d~~~~~~~~ykvv----------yss~  161 (355)
                      .+.-..+|-|.+.+.  ...++.++||-......++......    ...++.++..   .+.+-++          ++..
T Consensus        27 gvavd~dg~i~VaD~--~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          27 GVAVNAQNDIIVADT--NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRN---SGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             EEEECTTCCEEEEEG--GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETT---TTEEEEEECGGGCEEEEECTT
T ss_pred             EEEEcCCCCEEEEEC--CCCEEEEEeCCCCEEEEecccCCCccccccccccccccc---ccccceeccCCcccccccccc
Confidence            344445787877764  5678999998754444454432221    1134444433   3332222          4444


Q ss_pred             CCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEE
Q 018497          162 SNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNV  241 (355)
Q Consensus       162 t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~  241 (355)
                      ...++... ...... ... .   .+--+|.+|......        ..+..||........+..+ ....  ....++.
T Consensus       102 g~~~~~~~-~~~~~~-p~~-~---avd~~G~i~v~~~~~--------~~~~~~~~~g~~~~~~g~~-~~~~--~~~~i~~  164 (279)
T d1q7fa_         102 GQFVRKFG-ATILQH-PRG-V---TVDNKGRIIVVECKV--------MRVIIFDQNGNVLHKFGCS-KHLE--FPNGVVV  164 (279)
T ss_dssp             SCEEEEEC-TTTCSC-EEE-E---EECTTSCEEEEETTT--------TEEEEECTTSCEEEEEECT-TTCS--SEEEEEE
T ss_pred             ccceeecC-CCcccc-cce-e---ccccCCcEEEEeecc--------ceeeEeccCCceeeccccc-cccc--ccceeee
Confidence            44455443 111111 010 0   334468888876554        5899999988776666443 2221  2223333


Q ss_pred             E-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEe--EEEeeCCcEEEEEEeeCCceEEEEEeCCC
Q 018497          242 F-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWP--LGFTERGKIFIRGECRHGGYGLLVYNPHS  318 (355)
Q Consensus       242 ~-~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~--~~~~~~g~i~~~~~~~~~~~~l~~yd~~t  318 (355)
                      . +|.++++.....    .+  ++.+..   ..+.  .++........|  +++..+|.||+.  ...+...+..||.+.
T Consensus       165 d~~g~i~v~d~~~~----~V--~~~d~~---G~~~--~~~g~~g~~~~P~giavD~~G~i~Va--d~~~~~~v~~f~~~G  231 (279)
T d1q7fa_         165 NDKQEIFISDNRAH----CV--KVFNYE---GQYL--RQIGGEGITNYPIGVGINSNGEILIA--DNHNNFNLTIFTQDG  231 (279)
T ss_dssp             CSSSEEEEEEGGGT----EE--EEEETT---CCEE--EEESCTTTSCSEEEEEECTTCCEEEE--ECSSSCEEEEECTTS
T ss_pred             ccceeEEeeecccc----ce--eeeecC---Ccee--eeecccccccCCcccccccCCeEEEE--ECCCCcEEEEECCCC
Confidence            3 478888766442    44  444432   2232  334322212234  456678899988  422222588999887


Q ss_pred             CeEEEEEEe
Q 018497          319 DTFKCIGVH  327 (355)
Q Consensus       319 ~~~~~v~~~  327 (355)
                      +-...+...
T Consensus       232 ~~~~~~~~~  240 (279)
T d1q7fa_         232 QLISALESK  240 (279)
T ss_dssp             CEEEEEEES
T ss_pred             CEEEEEeCC
Confidence            666666543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.35  E-value=7.9  Score=33.04  Aligned_cols=195  Identities=11%  Similarity=-0.028  Sum_probs=98.9

Q ss_pred             ceEEEeecCCCCceEEEEcCCcccEEe-cCCCCCCCceeEEEEecCCCCCCcEEEE--------EEcCCCceeEeccCCC
Q 018497          103 GVLCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNPRYLGFGVNSVSGHLDDFKVV--------YSLRSNSWKNIAYGFP  173 (355)
Q Consensus       103 GLl~l~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~g~d~~~~~~~~ykvv--------yss~t~~W~~~~~~~p  173 (355)
                      .|+.+...  +.+.+.|+|+.|++.+. ++...   ...++.|.|.   ++...+.        ++..++.-+.+. .++
T Consensus        32 ~~~~v~~~--d~g~v~v~D~~t~~v~~~~~~g~---~~~~v~fSpD---G~~l~~~s~dg~v~~~d~~t~~~~~~~-~i~  102 (432)
T d1qksa2          32 NLFSVTLR--DAGQIALIDGSTYEIKTVLDTGY---AVHISRLSAS---GRYLFVIGRDGKVNMIDLWMKEPTTVA-EIK  102 (432)
T ss_dssp             GEEEEEET--TTTEEEEEETTTCCEEEEEECSS---CEEEEEECTT---SCEEEEEETTSEEEEEETTSSSCCEEE-EEE
T ss_pred             cEEEEEEc--CCCEEEEEECCCCcEEEEEeCCC---CeeEEEECCC---CCEEEEEcCCCCEEEEEeeCCCceEEE-EEe
Confidence            35445543  68899999999988865 44321   2356666664   3222211        565555433222 122


Q ss_pred             ceeeeccccccceeEeCceE-EEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCC-------CCCceEEEE-EC
Q 018497          174 RSIEINRSHINSSVFLNGSV-HWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLST-------DDADKYLNV-FD  243 (355)
Q Consensus       174 ~~~~~~~~~~~~~v~~~G~l-yw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~-------~~~~~~L~~-~~  243 (355)
                      ...............-||+. |..+...        ..|..+|..+.+.... ..+ ....       +.....+.. -+
T Consensus       103 ~~~~~~~~~~s~~~SpDG~~l~vs~~~~--------~~v~i~d~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~s~d  173 (432)
T d1qksa2         103 IGSEARSIETSKMEGWEDKYAIAGAYWP--------PQYVIMDGETLEPKKIQSTR-GMTYDEQEYHPEPRVAAILASHY  173 (432)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEET--------TEEEEEETTTCCEEEEEECC-EECTTTCCEESCCCEEEEEECSS
T ss_pred             cCCCCCCeEEecccCCCCCEEEEEcCCC--------CeEEEEeCccccceeeeccC-CccccceeccCCCceeEEEECCC
Confidence            11110000000011226864 4444433        6899999988876443 322 1110       111112222 23


Q ss_pred             CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497          244 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC  323 (355)
Q Consensus       244 G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~  323 (355)
                      |...++...+.   ..+.+|...+    ..=.++.+|+... ...-+++..+|+.++.. . .+...+.+.|.++++...
T Consensus       174 g~~~~vs~~~~---~~i~~~d~~~----~~~~~~~~i~~g~-~~~~~~~spdg~~~~va-~-~~~~~v~v~d~~~~~~~~  243 (432)
T d1qksa2         174 RPEFIVNVKET---GKILLVDYTD----LNNLKTTEISAER-FLHDGGLDGSHRYFITA-A-NARNKLVVIDTKEGKLVA  243 (432)
T ss_dssp             SSEEEEEETTT---TEEEEEETTC----SSEEEEEEEECCS-SEEEEEECTTSCEEEEE-E-GGGTEEEEEETTTTEEEE
T ss_pred             CCEEEEEEccC---CeEEEEEccC----CCcceEEEEcccC-ccccceECCCCCEEEEe-c-cccceEEEeecccceEEE
Confidence            65555555544   4666665543    1223445565544 24456778888654441 3 333368999999988765


Q ss_pred             EE
Q 018497          324 IG  325 (355)
Q Consensus       324 v~  325 (355)
                      ..
T Consensus       244 ~~  245 (432)
T d1qksa2         244 IE  245 (432)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.11  E-value=6.7  Score=31.97  Aligned_cols=117  Identities=13%  Similarity=0.104  Sum_probs=62.4

Q ss_pred             CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEE-ECCeEEEEEecCCCCccEEEEEEeccC
Q 018497          190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNV-FDGYLCVFATIPNNTFRSYELWVMKEY  268 (355)
Q Consensus       190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~-~~G~L~~v~~~~~~~~~~l~iW~l~~~  268 (355)
                      +|.|||.....        ..|..+|++++.......+ ...   ...-|+. -+|+|+++......  ....+..++..
T Consensus        50 ~G~Ly~~D~~~--------g~I~ri~p~g~~~~~~~~~-~~~---~p~gla~~~dG~l~va~~~~~~--~~~~i~~~~~~  115 (319)
T d2dg1a1          50 QGQLFLLDVFE--------GNIFKINPETKEIKRPFVS-HKA---NPAAIKIHKDGRLFVCYLGDFK--STGGIFAATEN  115 (319)
T ss_dssp             TSCEEEEETTT--------CEEEEECTTTCCEEEEEEC-SSS---SEEEEEECTTSCEEEEECTTSS--SCCEEEEECTT
T ss_pred             CCCEEEEECCC--------CEEEEEECCCCeEEEEEeC-CCC---CeeEEEECCCCCEEEEecCCCc--cceeEEEEcCC
Confidence            78999986554        6899999998876555333 221   1123333 35899887654321  23445555543


Q ss_pred             CCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeC-----CceEEEEEeCCCCeEEEE
Q 018497          269 GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH-----GGYGLLVYNPHSDTFKCI  324 (355)
Q Consensus       269 ~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~-----~~~~l~~yd~~t~~~~~v  324 (355)
                      .  ........-........-+.+..+|.+|+.  ...     ....++.++++.+.++.+
T Consensus       116 ~--~~~~~~~~~~~~~~~~nd~~~d~~G~l~vt--d~~~~~~~~~g~v~~~~~dg~~~~~~  172 (319)
T d2dg1a1         116 G--DNLQDIIEDLSTAYCIDDMVFDSKGGFYFT--DFRGYSTNPLGGVYYVSPDFRTVTPI  172 (319)
T ss_dssp             S--CSCEEEECSSSSCCCEEEEEECTTSCEEEE--ECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred             C--ceeeeeccCCCcccCCcceeEEeccceeec--ccccccccCcceeEEEecccceeEEE
Confidence            2  112221110011101223555667777776  211     011477788887776665

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=86.99  E-value=4.8  Score=31.48  Aligned_cols=95  Identities=14%  Similarity=0.060  Sum_probs=55.6

Q ss_pred             cEEEEEEcCCceee-EecCCCCCCCCCCceEEEEE-CCe-EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 018497          209 WLIVSFDFAKEIFQ-TVMMPYDLSTDDADKYLNVF-DGY-LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR  285 (355)
Q Consensus       209 ~~Il~fD~~~~~~~-~i~lP~~~~~~~~~~~L~~~-~G~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~  285 (355)
                      ..|..+|+++.+.. .++++ ..     ...++.. +|+ |++....+    ..+.+|-++.      ...+.+++... 
T Consensus        12 ~~v~v~D~~t~~~~~~i~~g-~~-----p~~va~spdG~~l~v~~~~~----~~i~v~d~~t------~~~~~~~~~~~-   74 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPVG-SN-----PMGAVISPDGTKVYVANAHS----NDVSIIDTAT------NNVIATVPAGS-   74 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECS-SS-----EEEEEECTTSSEEEEEEGGG----TEEEEEETTT------TEEEEEEECSS-
T ss_pred             CEEEEEECCCCeEEEEEECC-CC-----ceEEEEeCCCCEEEEEECCC----CEEEEEECCC------Cceeeeeeccc-
Confidence            57999999998764 34554 22     2334544 465 55444433    4899997764      24455555443 


Q ss_pred             eeEeEEEeeCCc-EEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497          286 IWWPLGFTERGK-IFIRGECRHGGYGLLVYNPHSDTFKC  323 (355)
Q Consensus       286 ~~~~~~~~~~g~-i~~~~~~~~~~~~l~~yd~~t~~~~~  323 (355)
                      ...-+.+..+|. +++.  ...+. .+..+|..+++...
T Consensus        75 ~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          75 SPQGVAVSPDGKQVYVT--NMASS-TLSVIDTTSNTVAG  110 (301)
T ss_dssp             SEEEEEECTTSSEEEEE--ETTTT-EEEEEETTTTEEEE
T ss_pred             ccccccccccccccccc--ccccc-eeeecccccceeee
Confidence            233455566664 4444  32334 58888988887544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.84  E-value=6.7  Score=30.78  Aligned_cols=105  Identities=7%  Similarity=-0.036  Sum_probs=56.6

Q ss_pred             cEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCcee
Q 018497          209 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIW  287 (355)
Q Consensus       209 ~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~  287 (355)
                      ..|..+|+.+++...+... ....  .-..+... +|+..++...+    ..+.+|.+...   ........+.......
T Consensus       158 g~i~~~d~~~~~~~~~~~~-~~~~--~i~~~~~~~~~~~l~~~~~d----~~i~~~~~~~~---~~~~~~~~~~~h~~~v  227 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTI-VHPA--EITSVAFSNNGAFLVATDQS----RKVIPYSVANN---FELAHTNSWTFHTAKV  227 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEE-ECSS--CEEEEEECTTSSEEEEEETT----SCEEEEEGGGT---TEESCCCCCCCCSSCE
T ss_pred             ccccccccccccccccccc-cccc--cccccccccccccccccccc----ccccccccccc---cccccccccccccccc
Confidence            5788888887776554322 1111  11223333 35555555444    48889987652   1111111111111124


Q ss_pred             EeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEE
Q 018497          288 WPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGV  326 (355)
Q Consensus       288 ~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~  326 (355)
                      ..+++..+|..++.  ...++ .+.+||+++.+...+..
T Consensus       228 ~~l~~s~~~~~l~s--gs~dg-~i~iwd~~~~~~~~~~~  263 (299)
T d1nr0a2         228 ACVSWSPDNVRLAT--GSLDN-SVIVWNMNKPSDHPIII  263 (299)
T ss_dssp             EEEEECTTSSEEEE--EETTS-CEEEEETTCTTSCCEEE
T ss_pred             ccccccccccceEE--EcCCC-EEEEEECCCCCcceEEE
Confidence            44666678877776  43667 49999999877655544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.75  E-value=5.2  Score=31.52  Aligned_cols=52  Identities=8%  Similarity=0.100  Sum_probs=27.6

Q ss_pred             cEEEEEEcCCceeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEe
Q 018497          209 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM  265 (355)
Q Consensus       209 ~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l  265 (355)
                      ..|..+|+.+.....+......... ....+...+|+..+.+..+    ..++||.+
T Consensus       246 g~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~s~s~D----~~i~iWdl  297 (299)
T d1nr0a2         246 NSVIVWNMNKPSDHPIIIKGAHAMS-SVNSVIWLNETTIVSAGQD----SNIKFWNV  297 (299)
T ss_dssp             SCEEEEETTCTTSCCEEETTSSTTS-CEEEEEEEETTEEEEEETT----SCEEEEEC
T ss_pred             CEEEEEECCCCCcceEEEecCCCCC-cEEEEEECCCCEEEEEeCC----CEEEEEec
Confidence            4788999887655433111011111 1122334456655555554    49999976

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.68  E-value=8.3  Score=31.70  Aligned_cols=105  Identities=10%  Similarity=0.081  Sum_probs=59.5

Q ss_pred             CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEE-CCeEEEEEecCCCCccEEEEEEecc
Q 018497          190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKE  267 (355)
Q Consensus       190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~  267 (355)
                      +|.+...+..+        ..|..+|..++++..+ .+. .+..  .-..|.-. +|++.+....+    ..+.||.++.
T Consensus        18 dg~~la~~~~~--------~~i~iw~~~~~~~~~~~~l~-gH~~--~V~~l~fsp~~~~l~s~s~D----~~i~vWd~~~   82 (371)
T d1k8kc_          18 DRTQIAICPNN--------HEVHIYEKSGNKWVQVHELK-EHNG--QVTGVDWAPDSNRIVTCGTD----RNAYVWTLKG   82 (371)
T ss_dssp             TSSEEEEECSS--------SEEEEEEEETTEEEEEEEEE-CCSS--CEEEEEEETTTTEEEEEETT----SCEEEEEEET
T ss_pred             CCCEEEEEeCC--------CEEEEEECCCCCEEEEEEec-CCCC--CEEEEEECCCCCEEEEEECC----CeEEEEeecc
Confidence            66665555443        4788999998888766 333 2221  12233333 46665555554    4899999985


Q ss_pred             CCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeC
Q 018497          268 YGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNP  316 (355)
Q Consensus       268 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~  316 (355)
                          ..|.....+.........+.+..+++.++.  ...++. +.+++.
T Consensus        83 ----~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~--~s~d~~-i~i~~~  124 (371)
T d1k8kc_          83 ----RTWKPTLVILRINRAARCVRWAPNEKKFAV--GSGSRV-ISICYF  124 (371)
T ss_dssp             ----TEEEEEEECCCCSSCEEEEEECTTSSEEEE--EETTSS-EEEEEE
T ss_pred             ----ccccccccccccccccccccccccccccee--ecccCc-ceeeee
Confidence                457766655432222444555667766655  324442 444433

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=85.52  E-value=8.1  Score=31.41  Aligned_cols=197  Identities=12%  Similarity=0.019  Sum_probs=94.6

Q ss_pred             CceEEEEcCCcccEEecCCCCCCC---ceeEEEEecCCCCCCcEEEE--------EEcCCCceeEeccCCCceeeecccc
Q 018497          114 RSLIYLWNPLIKKYMTLPRPSLNP---RYLGFGVNSVSGHLDDFKVV--------YSLRSNSWKNIAYGFPRSIEINRSH  182 (355)
Q Consensus       114 ~~~~~V~NP~T~~~~~LP~~~~~~---~~~~~g~d~~~~~~~~ykvv--------yss~t~~W~~~~~~~p~~~~~~~~~  182 (355)
                      .++++.++|.+++...+..+....   ...++.+++.   ++.+-|.        ++..++....+. ...........+
T Consensus        45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~d---g~~l~vad~~~~i~~~~~~g~~~~~~~-~~~~g~~~~~pn  120 (314)
T d1pjxa_          45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD---ANQLFVADMRLGLLVVQTDGTFEEIAK-KDSEGRRMQGCN  120 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS---SSEEEEEETTTEEEEEETTSCEEECCS-BCTTSCBCBCCC
T ss_pred             CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCC---CCEEEEEECCCeEEEEeCCCcEEEEEe-ccccccccCCCc
Confidence            457899999999876554433221   1267888876   5544332        666555443332 111111111111


Q ss_pred             ccceeEeCceEEEEEeeecc-------CCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEEC-C---eEEEEE
Q 018497          183 INSSVFLNGSVHWCARFSCY-------HDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFD-G---YLCVFA  250 (355)
Q Consensus       183 ~~~~v~~~G~lyw~~~~~~~-------~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~-G---~L~~v~  250 (355)
                       --.+--+|.+|+-......       ........|..+|.+.+.-... .+. . .   ....+...+ +   .|++..
T Consensus       121 -dl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~-~-p---NGi~~~~d~d~~~~~lyv~d  194 (314)
T d1pjxa_         121 -DCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQ-F-P---NGIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             -EEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEES-S-E---EEEEEEECTTSCEEEEEEEE
T ss_pred             -EEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcc-e-e---eeeEECCCCCcceeEEEEEe
Confidence             0023346888876433210       0112335688888765433332 222 0 0   122222222 2   466655


Q ss_pred             ecCCCCccEEEEEEeccCCCCCCeEEE-EEecCCCc-eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE-EEEEEe
Q 018497          251 TIPNNTFRSYELWVMKEYGLTESWTKL-YTIEKPQR-IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF-KCIGVH  327 (355)
Q Consensus       251 ~~~~~~~~~l~iW~l~~~~~~~~W~~~-~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~-~~v~~~  327 (355)
                      ...+    ++..+.++..+ .-.+.++ ..++.... ...-+++..+|.||+.  ....+ .|..||+++++. ..+...
T Consensus       195 ~~~~----~i~~~d~~~~g-~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa--~~~~g-~I~~~dp~~g~~~~~i~~p  266 (314)
T d1pjxa_         195 TPTK----KLWSYDIKGPA-KIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA--NWGSS-HIEVFGPDGGQPKMRIRCP  266 (314)
T ss_dssp             TTTT----EEEEEEEEETT-EEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE--EETTT-EEEEECTTCBSCSEEEECS
T ss_pred             eccc----ceEEeeccCcc-ccceeeEEEEccccccccceeeEEecCCcEEEE--EcCCC-EEEEEeCCCCEEEEEEECC
Confidence            4332    44333344322 1222222 23332221 1223556678899988  53445 599999998875 445554


Q ss_pred             c
Q 018497          328 L  328 (355)
Q Consensus       328 ~  328 (355)
                      .
T Consensus       267 ~  267 (314)
T d1pjxa_         267 F  267 (314)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=83.66  E-value=1.9  Score=38.83  Aligned_cols=29  Identities=17%  Similarity=0.378  Sum_probs=24.1

Q ss_pred             eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCc--eeeE
Q 018497          186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQT  223 (355)
Q Consensus       186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~--~~~~  223 (355)
                      ++++||++|......         .|+++|.+|.  .|+.
T Consensus        62 Piv~~g~vyv~t~~~---------~v~AlDa~tG~~lW~~   92 (560)
T d1kv9a2          62 PLFHDGVIYTSMSWS---------RVIAVDAASGKELWRY   92 (560)
T ss_dssp             CEEETTEEEEEEGGG---------EEEEEETTTCCEEEEE
T ss_pred             CEEECCEEEEECCCC---------eEEEEeCCCCCEEEEE
Confidence            899999999887765         8999998765  5664

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.48  E-value=12  Score=30.52  Aligned_cols=194  Identities=10%  Similarity=0.072  Sum_probs=89.0

Q ss_pred             eCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCc-eeEEEEecCCCCCC---------cEEEEEEcCCCceeEecc
Q 018497          101 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPR-YLGFGVNSVSGHLD---------DFKVVYSLRSNSWKNIAY  170 (355)
Q Consensus       101 ~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~-~~~~g~d~~~~~~~---------~ykvvyss~t~~W~~~~~  170 (355)
                      -+|-+++...  .++.+.|||..++++..+........ ...+.+.|.   ++         .-+| ++..++.|+... 
T Consensus        17 ~dg~~la~~~--~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~---~~~l~s~s~D~~i~v-Wd~~~~~~~~~~-   89 (371)
T d1k8kc_          17 KDRTQIAICP--NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD---SNRIVTCGTDRNAYV-WTLKGRTWKPTL-   89 (371)
T ss_dssp             TTSSEEEEEC--SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT---TTEEEEEETTSCEEE-EEEETTEEEEEE-
T ss_pred             CCCCEEEEEe--CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC---CCEEEEEECCCeEEE-Eeeccccccccc-
Confidence            3555544432  45678889988877655543332221 245555554   22         1111 788888887554 


Q ss_pred             CCCceeeeccccccceeEe--CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CCeEE
Q 018497          171 GFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGYLC  247 (355)
Q Consensus       171 ~~p~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G~L~  247 (355)
                      ..........     .+.+  +|.....+...      ..-.+..++..+..+...... ..... ....+.-. +|++.
T Consensus        90 ~~~~~~~~v~-----~i~~~p~~~~l~~~s~d------~~i~i~~~~~~~~~~~~~~~~-~~~~~-~v~~v~~~p~~~~l  156 (371)
T d1k8kc_          90 VILRINRAAR-----CVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHIK-KPIRS-TVLSLDWHPNSVLL  156 (371)
T ss_dssp             ECCCCSSCEE-----EEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEEC-TTCCS-CEEEEEECTTSSEE
T ss_pred             cccccccccc-----ccccccccccceeeccc------Ccceeeeeecccccccccccc-ccccc-ccccccccccccce
Confidence            2221100000     1111  44433333222      223344445455444433211 11111 11122222 46665


Q ss_pred             EEEecCCCCccEEEEEEeccCCC-----CCCeE-------EEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEe
Q 018497          248 VFATIPNNTFRSYELWVMKEYGL-----TESWT-------KLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYN  315 (355)
Q Consensus       248 ~v~~~~~~~~~~l~iW~l~~~~~-----~~~W~-------~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd  315 (355)
                      +.+..+    ..+.+|.+.....     ...|.       ..............+++..+|+.++.  ...++ .+..||
T Consensus       157 ~s~s~D----~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s--~~~d~-~i~iwd  229 (371)
T d1k8kc_         157 AAGSCD----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW--VSHDS-TVCLAD  229 (371)
T ss_dssp             EEEETT----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE--EETTT-EEEEEE
T ss_pred             eccccC----cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccc--cccCC-cceEEe
Confidence            555555    4889998754210     11121       11111111112344666677766665  32566 488899


Q ss_pred             CCCCeE
Q 018497          316 PHSDTF  321 (355)
Q Consensus       316 ~~t~~~  321 (355)
                      .++++.
T Consensus       230 ~~~~~~  235 (371)
T d1k8kc_         230 ADKKMA  235 (371)
T ss_dssp             GGGTTE
T ss_pred             eecccc
Confidence            877654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.42  E-value=9.2  Score=30.17  Aligned_cols=91  Identities=12%  Similarity=0.043  Sum_probs=50.3

Q ss_pred             cEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEE-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 018497          209 WLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI  286 (355)
Q Consensus       209 ~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~  286 (355)
                      ..|..+|+........ ..+ ....  ....+.-. +|++.+++..+    ..+.||-+..      +..+.++......
T Consensus       248 ~~i~~~~~~~~~~~~~~~~~-~~~~--~i~~~~~s~~~~~l~~g~~d----g~i~iwd~~~------~~~~~~~~~H~~~  314 (340)
T d1tbga_         248 ATCRLFDLRADQELMTYSHD-NIIC--GITSVSFSKSGRLLLAGYDD----FNCNVWDALK------ADRAGVLAGHDNR  314 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCT-TCCS--CEEEEEECSSSCEEEEEETT----SCEEEEETTT------CCEEEEECCCSSC
T ss_pred             CeEEEEeecccccccccccc-cccC--ceEEEEECCCCCEEEEEECC----CEEEEEECCC------CcEEEEEcCCCCC
Confidence            4677888876655333 332 2211  11223333 36666666655    4899997653      3455666532223


Q ss_pred             eEeEEEeeCCcEEEEEEeeCCceEEEEEe
Q 018497          287 WWPLGFTERGKIFIRGECRHGGYGLLVYN  315 (355)
Q Consensus       287 ~~~~~~~~~g~i~~~~~~~~~~~~l~~yd  315 (355)
                      ...+++..+|..++.  ...|+ .+.++|
T Consensus       315 V~~l~~s~d~~~l~s--~s~Dg-~v~iWd  340 (340)
T d1tbga_         315 VSCLGVTDDGMAVAT--GSWDS-FLKIWN  340 (340)
T ss_dssp             EEEEEECTTSSCEEE--EETTS-CEEEEC
T ss_pred             EEEEEEeCCCCEEEE--EccCC-EEEEeC
Confidence            455666777776666  43666 477775

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=80.16  E-value=6.9  Score=31.45  Aligned_cols=108  Identities=9%  Similarity=0.032  Sum_probs=60.9

Q ss_pred             CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE--CCeEEEEEecCCCCccEEEEEEecc
Q 018497          190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF--DGYLCVFATIPNNTFRSYELWVMKE  267 (355)
Q Consensus       190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~--~G~L~~v~~~~~~~~~~l~iW~l~~  267 (355)
                      ||++......+         .|..+|..++....+.-+   .    ...-+..  +|+..++...+++  ..+.+|-++.
T Consensus        14 dG~~~a~~~~g---------~v~v~d~~~~~~~~~~~~---~----~v~~~~~spDg~~l~~~~~~~g--~~v~v~d~~~   75 (360)
T d1k32a3          14 DGDLIAFVSRG---------QAFIQDVSGTYVLKVPEP---L----RIRYVRRGGDTKVAFIHGTREG--DFLGIYDYRT   75 (360)
T ss_dssp             GGGCEEEEETT---------EEEEECTTSSBEEECSCC---S----CEEEEEECSSSEEEEEEEETTE--EEEEEEETTT
T ss_pred             CCCEEEEEECC---------eEEEEECCCCcEEEccCC---C----CEEEEEECCCCCEEEEEEcCCC--CEEEEEECCC
Confidence            55555544433         788889988876655222   1    2222222  4766555544431  4677886653


Q ss_pred             CCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEE
Q 018497          268 YGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIG  325 (355)
Q Consensus       268 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~  325 (355)
                          .+-   ..+.........+++..+|+.++.  ...++ .+..+|+++++...+.
T Consensus        76 ----~~~---~~~~~~~~~v~~~~~spdg~~l~~--~~~~~-~~~~~~~~~~~~~~~~  123 (360)
T d1k32a3          76 ----GKA---EKFEENLGNVFAMGVDRNGKFAVV--ANDRF-EIMTVDLETGKPTVIE  123 (360)
T ss_dssp             ----CCE---EECCCCCCSEEEEEECTTSSEEEE--EETTS-EEEEEETTTCCEEEEE
T ss_pred             ----CcE---EEeeCCCceEEeeeecccccccce--ecccc-ccccccccccceeeee
Confidence                111   122222213455777788865555  32566 4999999998876653