Citrus Sinensis ID: 018505

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLPSSPVASQPAQAANALPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEPSVPISSSTSNTSSVSLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSVCPLPYAGLLGKFCLAIFCFK
cccccHHHHHHHHHHHHccccccccccccccccccccccccEEEEccccccccccccEEEEEEccccccccHHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccHHHHccccccHHccc
cccccccHHHHHHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccEEEHccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHHHHcccccccHHHHcccccccccHHccccHcHEccccHHHHHHHHHHHHHHHccc
masdnltdknLVFRKLKAKSenkmcfdcnaknptwasVTYGIFLCIDCSAVHRSLGVHISfvrstnldswSAEQLKMMVYGGNNRAQVFFkqhgwtdggkiEAKYTSRAAELYKQILAKEVAKNMaeeaglpsspvasqpaqaanalpdvkiqdapkenyqgrqetqdapgspkvsrtvltstvkkplgakksgktgglgarkltskpseslyeqkpeepsvpissstsntssvslpfasrfeyvdnvqsselssggpqvlshvappksssffadygmdngfqkksgsskVQIQETDEARKKFSnaksisssqffgdqnnsidmdTQVSLQkfsvcplpyagllGKFCLAIFCFK
masdnltdknlvfrklkaksenkmCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLPSSPVASQPAQAANALPDVKIQDAPKENYQgrqetqdapgspkvsrtvltstvkkplgakksgktgglgarkltskpseslyeqkpeepsvpissstsnTSSVSLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSVCPLPYAGLLGKFCLAIFCFK
MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLpsspvasqpaqaanaLPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEpsvpissstsntssvsLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSVCPLPYAGLLGKFCLAIFCFK
**********LVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAK**************************************************************************************************************************************************************************************************************TQVSLQKFSVCPLPYAGLLGKFCLAIFCF*
***********VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGW***********SRAAELYKQILAKEVA****************************************************************************************************************************************************************************************************************************LLGKFCLAIFCFK
MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNM*******************NALPDVKIQDAPK*********************VLTSTVKKPLGAKKSGKTGGLGARKLTSK***************************SLPFASRFEYVDN************VLSHVAPPKSSSFFADYGMDNGF**************************ISSSQFFGDQNNSIDMDTQVSLQKFSVCPLPYAGLLGKFCLAIFCFK
******TDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDG*KI*AKYTSRAAELYKQILAKEVAKNMAEEAG***************************************************************************************************************************************************************************************************TQVSLQKFSVCPLPYAGLLGKFCLAIFCFK
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
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MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLPSSPVASQPAQAANALPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEPSVPISSSTSNTSSVSLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSVCPLPYAGLLGKFCLAIFCFK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query355 2.2.26 [Sep-21-2011]
Q8H100413 Probable ADP-ribosylation yes no 0.929 0.799 0.667 1e-125
Q9FIQ0402 Probable ADP-ribosylation no no 0.918 0.810 0.665 1e-121
O82171395 ADP-ribosylation factor G no no 0.918 0.825 0.674 1e-116
A1L520 520 ADP-ribosylation factor G yes no 0.318 0.217 0.582 1e-34
Q8N6H7 521 ADP-ribosylation factor G no no 0.318 0.216 0.573 2e-34
Q99K28 520 ADP-ribosylation factor G yes no 0.318 0.217 0.573 3e-34
Q9D8S3 523 ADP-ribosylation factor G no no 0.535 0.363 0.407 3e-34
Q5RAT7 521 ADP-ribosylation factor G yes no 0.318 0.216 0.573 4e-34
Q17R07 517 ADP-ribosylation factor G no no 0.295 0.203 0.598 1e-33
Q4R4C9 516 ADP-ribosylation factor G N/A no 0.540 0.372 0.405 1e-33
>sp|Q8H100|AGD8_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1 Back     alignment and function desciption
 Score =  447 bits (1151), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/343 (66%), Positives = 278/343 (81%), Gaps = 13/343 (3%)

Query: 2   ASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISF 61
           ++DNLTDKN+VFRKLK+KSENK+CFDC+AKNPTWASVTYGIFLCIDCSA HR+LGVHISF
Sbjct: 5   SADNLTDKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISF 64

Query: 62  VRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEV 121
           VRSTNLDSWS EQL+ M++GGNNRAQVFFKQHGWTDGGKIEAKYTSRAA+LY+QILAKEV
Sbjct: 65  VRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEV 124

Query: 122 AKNMAEE--AGLPSSPVA-SQPAQAANALPDVKIQDAPKENYQGRQETQDAPGSPKVSRT 178
           AK +AEE  +GL SSPVA SQ  + +N +    +++   E    + E   A  SPK S T
Sbjct: 125 AKAIAEETNSGLLSSPVATSQLPEVSNGVSSYSVKE---ELPLSKHEATSATSSPKASNT 181

Query: 179 VLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEE--PSVPISSSTSN---TSS 233
           V+ ST KKP+GAK++GKTGGLGARKLT+KP ++LYEQKPEE  P +P  SST+N    SS
Sbjct: 182 VVPSTFKKPIGAKRTGKTGGLGARKLTTKPKDNLYEQKPEEVAPVIPAVSSTNNGESKSS 241

Query: 234 VSLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMD--NGFQKKSGSSKV 291
               FASRFEY D++QS   S GG QVL+HVAPPKSSSFF+D+GMD     +  S SSK 
Sbjct: 242 AGSSFASRFEYNDDLQSGGQSVGGTQVLNHVAPPKSSSFFSDFGMDSSFPKKSSSNSSKS 301

Query: 292 QIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFS 334
           Q++E+DEARKKF+NAKSISS+Q+FGDQN + D++++ +LQKF+
Sbjct: 302 QVEESDEARKKFTNAKSISSAQYFGDQNKNADLESKATLQKFA 344
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FIQ0|AGD9_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1 Back     alignment and function description
>sp|O82171|AGD10_ARATH ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1 Back     alignment and function description
>sp|A1L520|ARFG2_BOVIN ADP-ribosylation factor GTPase-activating protein 2 OS=Bos taurus GN=ARFGAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q8N6H7|ARFG2_HUMAN ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens GN=ARFGAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q99K28|ARFG2_MOUSE ADP-ribosylation factor GTPase-activating protein 2 OS=Mus musculus GN=Arfgap2 PE=1 SV=1 Back     alignment and function description
>sp|Q9D8S3|ARFG3_MOUSE ADP-ribosylation factor GTPase-activating protein 3 OS=Mus musculus GN=Arfgap3 PE=2 SV=2 Back     alignment and function description
>sp|Q5RAT7|ARFG2_PONAB ADP-ribosylation factor GTPase-activating protein 2 OS=Pongo abelii GN=ARFGAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q17R07|ARFG3_BOVIN ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description
>sp|Q4R4C9|ARFG3_MACFA ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
255573503404 arf gtpase-activating protein, putative 0.940 0.826 0.794 1e-158
359474555405 PREDICTED: probable ADP-ribosylation fac 0.940 0.824 0.782 1e-155
224138128406 predicted protein [Populus trichocarpa] 0.938 0.820 0.775 1e-151
224126465404 predicted protein [Populus trichocarpa] 0.938 0.824 0.786 1e-150
356526713403 PREDICTED: probable ADP-ribosylation fac 0.938 0.826 0.764 1e-148
356495867403 PREDICTED: probable ADP-ribosylation fac 0.938 0.826 0.755 1e-145
449462021405 PREDICTED: probable ADP-ribosylation fac 0.938 0.822 0.738 1e-134
51968646413 unknown protein [Arabidopsis thaliana] 0.929 0.799 0.667 1e-123
18414983413 putative ADP-ribosylation factor GTPase- 0.929 0.799 0.667 1e-123
79325147384 putative ADP-ribosylation factor GTPase- 0.929 0.859 0.667 1e-123
>gi|255573503|ref|XP_002527677.1| arf gtpase-activating protein, putative [Ricinus communis] gi|223532982|gb|EEF34748.1| arf gtpase-activating protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 267/336 (79%), Positives = 304/336 (90%), Gaps = 2/336 (0%)

Query: 1   MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHIS 60
           MAS+N TDKN+VFRKLKAKS+NKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHIS
Sbjct: 1   MASENFTDKNVVFRKLKAKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHIS 60

Query: 61  FVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKE 120
           FVRSTNLDSWS EQLK+M +GGNNRAQ FFKQHGWTDGGKIEAKYTSRAA+LY+QIL+KE
Sbjct: 61  FVRSTNLDSWSPEQLKVMSFGGNNRAQAFFKQHGWTDGGKIEAKYTSRAADLYRQILSKE 120

Query: 121 VAKNMAEEAGLPSSPVASQPAQAANALPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVL 180
           VAK+MAE+AGLPSSPVASQ AQA+N  PDVK  ++P+E+  G+QET D P  PKVS  ++
Sbjct: 121 VAKSMAEDAGLPSSPVASQSAQASNGFPDVKTNESPEESSLGKQETPDVPPPPKVSHPII 180

Query: 181 TSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEPSVPISSSTSNTSSVSLPFAS 240
           TSTVKKPLGAK++GKTGGLGARKLT+KPSESLY+QKPEEP +P+ ++T+NT      F S
Sbjct: 181 TSTVKKPLGAKRTGKTGGLGARKLTTKPSESLYDQKPEEPPLPVPAATNNTPKAGTSFTS 240

Query: 241 RFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKS--GSSKVQIQETDE 298
           RFEYVDNVQS+EL SGGPQV+SHV+PPKSSSFFA++GMD+GFQKKS   SSKVQIQETDE
Sbjct: 241 RFEYVDNVQSTELISGGPQVISHVSPPKSSSFFAEFGMDSGFQKKSSNNSSKVQIQETDE 300

Query: 299 ARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFS 334
           ARKKFSNAKSISS+QFFGDQN + D+D+QVSLQKFS
Sbjct: 301 ARKKFSNAKSISSAQFFGDQNKATDIDSQVSLQKFS 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474555|ref|XP_002278066.2| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Vitis vinifera] gi|297742095|emb|CBI33882.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224138128|ref|XP_002326525.1| predicted protein [Populus trichocarpa] gi|222833847|gb|EEE72324.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224126465|ref|XP_002329561.1| predicted protein [Populus trichocarpa] gi|222870270|gb|EEF07401.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356526713|ref|XP_003531961.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Glycine max] Back     alignment and taxonomy information
>gi|356495867|ref|XP_003516792.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Glycine max] Back     alignment and taxonomy information
>gi|449462021|ref|XP_004148740.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Cucumis sativus] gi|449517898|ref|XP_004165981.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|51968646|dbj|BAD43015.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18414983|ref|NP_567543.1| putative ADP-ribosylation factor GTPase-activating protein AGD8 [Arabidopsis thaliana] gi|75244593|sp|Q8H100.1|AGD8_ARATH RecName: Full=Probable ADP-ribosylation factor GTPase-activating protein AGD8; Short=ARF GAP AGD8; AltName: Full=Protein ARF-GAP DOMAIN 8; Short=AtAGD8 gi|24030421|gb|AAN41368.1| unknown protein [Arabidopsis thaliana] gi|51970716|dbj|BAD44050.1| unknown protein [Arabidopsis thaliana] gi|51971433|dbj|BAD44381.1| unknown protein [Arabidopsis thaliana] gi|62319827|dbj|BAD93852.1| hypothetical protein [Arabidopsis thaliana] gi|62320091|dbj|BAD94263.1| hypothetical protein [Arabidopsis thaliana] gi|110739292|dbj|BAF01559.1| hypothetical protein [Arabidopsis thaliana] gi|332658561|gb|AEE83961.1| putative ADP-ribosylation factor GTPase-activating protein AGD8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79325147|ref|NP_001031658.1| putative ADP-ribosylation factor GTPase-activating protein AGD8 [Arabidopsis thaliana] gi|222423514|dbj|BAH19727.1| AT4G17890 [Arabidopsis thaliana] gi|332658562|gb|AEE83962.1| putative ADP-ribosylation factor GTPase-activating protein AGD8 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
TAIR|locus:2141060413 AGD8 "AT4G17890" [Arabidopsis 0.938 0.806 0.632 6.8e-111
TAIR|locus:2178545402 AGD9 "AT5G46750" [Arabidopsis 0.926 0.818 0.639 6.3e-110
TAIR|locus:2063429395 RPA "AT2G35210" [Arabidopsis t 0.921 0.827 0.652 3.5e-107
ZFIN|ZDB-GENE-051120-177 536 arfgap2 "ADP-ribosylation fact 0.321 0.212 0.564 1.2e-46
UNIPROTKB|E1C322 522 ARFGAP3 "Uncharacterized prote 0.360 0.245 0.526 1.4e-46
UNIPROTKB|A1L520 520 ARFGAP2 "ADP-ribosylation fact 0.318 0.217 0.582 3.9e-46
ZFIN|ZDB-GENE-040426-1 498 arfgap3 "ADP-ribosylation fact 0.338 0.240 0.548 4.6e-46
UNIPROTKB|Q8N6H7 521 ARFGAP2 "ADP-ribosylation fact 0.318 0.216 0.573 5.4e-46
UNIPROTKB|F1SIB9 520 ARFGAP2 "Uncharacterized prote 0.318 0.217 0.565 7.2e-46
UNIPROTKB|Q9NP61 516 ARFGAP3 "ADP-ribosylation fact 0.360 0.248 0.519 3.7e-45
TAIR|locus:2141060 AGD8 "AT4G17890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
 Identities = 215/340 (63%), Positives = 256/340 (75%)

Query:     2 ASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISF 61
             ++DNLTDKN+VFRKLK+KSENK+CFDC+AKNPTWASVTYGIFLCIDCSA HR+LGVHISF
Sbjct:     5 SADNLTDKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISF 64

Query:    62 VRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEV 121
             VRSTNLDSWS EQL+ M++GGNNRAQVFFKQHGWTDGGKIEAKYTSRAA+LY+QILAKEV
Sbjct:    65 VRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEV 124

Query:   122 AKNMAEEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLT 181
             AK +AEE                     V      +E    + E   A  SPK S TV+ 
Sbjct:   125 AKAIAEETNSGLLSSPVATSQLPEVSNGVSSYSVKEELPLSKHEATSATSSPKASNTVVP 184

Query:   182 STVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEXX-----XXXXXXXXXXXXXXL 236
             ST KKP+GAK++GKTGGLGARKLT+KP ++LYEQKPEE                      
Sbjct:   185 STFKKPIGAKRTGKTGGLGARKLTTKPKDNLYEQKPEEVAPVIPAVSSTNNGESKSSAGS 244

Query:   237 PFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGS--SKVQIQ 294
              FASRFEY D++QS   S GG QVL+HVAPPKSSSFF+D+GMD+ F KKS S  SK Q++
Sbjct:   245 SFASRFEYNDDLQSGGQSVGGTQVLNHVAPPKSSSFFSDFGMDSSFPKKSSSNSSKSQVE 304

Query:   295 ETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFS 334
             E+DEARKKF+NAKSISS+Q+FGDQN + D++++ +LQKF+
Sbjct:   305 ESDEARKKFTNAKSISSAQYFGDQNKNADLESKATLQKFA 344
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2178545 AGD9 "AT5G46750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063429 RPA "AT2G35210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051120-177 arfgap2 "ADP-ribosylation factor GTPase activating protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C322 ARFGAP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A1L520 ARFGAP2 "ADP-ribosylation factor GTPase-activating protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1 arfgap3 "ADP-ribosylation factor GTPase activating protein 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N6H7 ARFGAP2 "ADP-ribosylation factor GTPase-activating protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SIB9 ARFGAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NP61 ARFGAP3 "ADP-ribosylation factor GTPase-activating protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H100AGD8_ARATHNo assigned EC number0.66760.92950.7990yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 1e-139
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 2e-48
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 5e-43
COG5347319 COG5347, COG5347, GTPase-activating protein that r 4e-41
PLN03119 648 PLN03119, PLN03119, putative ADP-ribosylation fact 1e-06
PLN03131 705 PLN03131, PLN03131, hypothetical protein; Provisio 2e-04
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information 
 Score =  399 bits (1027), Expect = e-139
 Identities = 230/341 (67%), Positives = 269/341 (78%), Gaps = 15/341 (4%)

Query: 1   MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHIS 60
           MAS+NL DK  VF+KLKAKS+NK+CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHIS
Sbjct: 1   MASENLNDKISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHIS 60

Query: 61  FVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKE 120
           FVRSTNLDSWS+EQLKMM+YGGNNRAQVFFKQ+GW+DGGK EAKYTSRAA+LYKQILAKE
Sbjct: 61  FVRSTNLDSWSSEQLKMMIYGGNNRAQVFFKQYGWSDGGKTEAKYTSRAADLYKQILAKE 120

Query: 121 VAKNMAEEA-GLPSSPVASQPAQAANALPDVKIQDAPKE-NYQGRQETQD-APGSPKVSR 177
           VAK+ AEE   LP SP  S   Q  N L  +K  +A KE N   +QE  D  P SP++SR
Sbjct: 121 VAKSKAEEELDLPPSPPDS--TQVPNGLSSIKTSEALKESNTLKQQEKPDVVPVSPRISR 178

Query: 178 TVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEPSVPISSSTSNTSSVSLP 237
                +VKKPLGAKK+GKTGGLGARKLT+K S +LY+QKPEE  +  ++S  +  S    
Sbjct: 179 -----SVKKPLGAKKTGKTGGLGARKLTTKSSGTLYDQKPEESVIIQATSPVSAKSARSS 233

Query: 238 FASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNG--FQKK--SGSSKVQI 293
           F+SRF+Y DNVQ+ E     PQV+SHVAPPKSS FF +    NG  FQKK  + SSK+QI
Sbjct: 234 FSSRFDYADNVQNRE-DYMSPQVVSHVAPPKSSGFFEEELEMNGGRFQKKPITSSSKLQI 292

Query: 294 QETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFS 334
           QETDEARKKF+NAKSISS+Q+FG+ NNS D++ + SL+KFS
Sbjct: 293 QETDEARKKFTNAKSISSAQYFGNDNNSADLEAKSSLKKFS 333

Length = 395
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 355
PLN03114395 ADP-ribosylation factor GTPase-activating protein 100.0
KOG0706454 consensus Predicted GTPase-activating protein [Sig 100.0
KOG0704386 consensus ADP-ribosylation factor GTPase activator 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 100.0
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 99.97
PLN03131 705 hypothetical protein; Provisional 99.95
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 99.95
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.86
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.79
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 99.69
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.57
KOG0702 524 consensus Predicted GTPase-activating protein [Sig 99.16
KOG0521785 consensus Putative GTPase activating proteins (GAP 93.64
PRK00085247 recO DNA repair protein RecO; Reviewed 83.81
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.7e-98  Score=726.31  Aligned_cols=339  Identities=67%  Similarity=1.009  Sum_probs=311.1

Q ss_pred             CCCcchhhHHHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhc
Q 018505            1 MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVY   80 (355)
Q Consensus         1 M~~~~~~~~~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~   80 (355)
                      |+....+|+.++|++|+..|+|++|||||+++|+|+|+|||||||++|+||||.||+||++|||++||.|++++|++|+.
T Consensus         1 m~~e~~~d~~~vfrkL~~kPgNk~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD~Ws~eqL~~Mk~   80 (395)
T PLN03114          1 MASENLNDKISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIY   80 (395)
T ss_pred             CcchhhccHHHHHHHHHhCcCCCcCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCCCCCHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhhcCCCCCCccccccccHHHHHHHHHHHHHHHHHhhhcc-CCCCCCCCCCCcccCCCCCCccCCCCCCC-
Q 018505           81 GGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEA-GLPSSPVASQPAQAANALPDVKIQDAPKE-  158 (355)
Q Consensus        81 gGN~~an~~~e~~g~~~~~~i~~KY~~raa~~Yr~~l~~~v~k~~~~~~-~~~~~~~~~~~~~~~d~f~~~~~~~~~~~-  158 (355)
                      +||.++|.||++||+.....|+.||.++++.+||++|.++|++.++++. .+|++++++..  ..|+|++.+..+.|.+ 
T Consensus        81 GGN~rA~~fF~qhG~~~~~~~~~KY~S~aA~~Yre~L~keVa~~~a~~~~~~p~~~~~~~~--~~~~~~~~~~~e~~~~~  158 (395)
T PLN03114         81 GGNNRAQVFFKQYGWSDGGKTEAKYTSRAADLYKQILAKEVAKSKAEEELDLPPSPPDSTQ--VPNGLSSIKTSEALKES  158 (395)
T ss_pred             hcCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccc--cccCccccccccccccc
Confidence            9999999999999998877899999999999999999999999998765 56677766433  8899999999888865 


Q ss_pred             -CcCCCCCCCCCCCCCcccccccccccccCcccccCCCCCCcCceeccCCCCccccccCCCCCCCCCCCCCCC-CCCCCC
Q 018505          159 -NYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEPSVPISSSTSN-TSSVSL  236 (355)
Q Consensus       159 -~~~~~~~~~~~~~~p~~~~~~~s~~~KKp~~aKklGKkggLGAqKv~t~~~e~l~eQk~~E~~~~~~~~~~~-~~~~~~  236 (355)
                       +...+++|....++|+++     +..|||||+||.||+|||||+||+|+++|+||||||+| .++.|++++. .+..++
T Consensus       159 ~~~~~~~~~~~~~~s~~~~-----~~~kk~~gak~~gktgglg~~klttk~~~~ly~qkp~e-~~~~~~~~~~~~~~~~~  232 (395)
T PLN03114        159 NTLKQQEKPDVVPVSPRIS-----RSVKKPLGAKKTGKTGGLGARKLTTKSSGTLYDQKPEE-SVIIQATSPVSAKSARS  232 (395)
T ss_pred             CCcccccCCcccCCCCCCc-----cccccccccccccccCCccccccccCCchhhhhcCccc-cCCCCCCCccccccCCC
Confidence             334455665666677765     57899999999999999999999999999999999999 7788877765 367788


Q ss_pred             CcccchhhhccccccCCCCCCCCcccccCCCCCCccc-cccCCCCC-cccCCC--CCcccccccHHHHHhcccccccccc
Q 018505          237 PFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFF-ADYGMDNG-FQKKSG--SSKVQIQETDEARKKFSNAKSISSS  312 (355)
Q Consensus       237 ~~ssRlaY~d~~~~~~~~~~~~~~~shs~~p~~~~ff-~~~gm~~~-~~~~~~--~~k~~~~~t~ea~kKF~naKaISSd  312 (355)
                      +.++||.|.|++|. ++..+++++++|++||++++|| ++|||+.| +++++.  +.|+|++++|||||||+|||+||||
T Consensus       233 ~~~srf~y~d~~~~-~~~~~~~~~~~hvapp~ss~ff~~e~g~~~~~~~k~~~~~~~k~q~~e~~~a~kKF~naKsisS~  311 (395)
T PLN03114        233 SFSSRFDYADNVQN-REDYMSPQVVSHVAPPKSSGFFEEELEMNGGRFQKKPITSSSKLQIQETDEARKKFTNAKSISSA  311 (395)
T ss_pred             Ccchhhhhcccccc-ccccCCcccccccCCCccchhhHHhhcCCcccccCCCCCccccccccchHHHHHHhcccccccHH
Confidence            89999999999998 8888889999999999999999 89999999 888887  7899999999999999999999999


Q ss_pred             cccCCCCCCcccchhhcccccccCC-CCCccccCccc
Q 018505          313 QFFGDQNNSIDMDTQVSLQKFSVCP-LPYAGLLGKFC  348 (355)
Q Consensus       313 ~~FG~~~~~~~~e~~~rL~~f~gs~-iss~~~fg~~~  348 (355)
                      ||||+++++.|+|++++|+||+|++ |||+||||++.
T Consensus       312 qfFg~~~~~~d~~~~~~l~kf~gs~~ISsad~fg~~~  348 (395)
T PLN03114        312 QYFGNDNNSADLEAKSSLKKFSGSSAISSADLFGDSD  348 (395)
T ss_pred             hhccccccccchhhHHHHHhhccccccchHHhcCCCC
Confidence            9999999888999999999999999 99999999983

>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>PRK00085 recO DNA repair protein RecO; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 3e-34
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 3e-33
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 2e-25
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 1e-24
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 2e-23
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 3e-23
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 6e-21
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 2e-18
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 4e-16
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 4e-16
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 4e-16
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 1e-12
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 1e-12
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 1e-11
3lvq_E 497 The Crystal Structure Of Asap3 In Complex With Arf6 2e-11
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 2e-11
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 1e-05
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 1e-05
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure 
Iteration: 1

 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/115 (57%), Positives = 83/115 (72%), Gaps = 2/115 (1%)
Query: 2   ASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISF 61
           A  N T+   +F++L+A   NK CFDC AKNP+WAS+TYG+FLCIDCS VHRSLGVH+SF
Sbjct: 17  AEPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSF 76
Query: 62  VRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQ 115
           +RST LDS W+  QL+ M  GGN  A  FF+QHG T       KY SRAA++Y++
Sbjct: 77  IRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCT-ANDANTKYNSRAAQMYRE 130
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
2owa_A138 Arfgap-like finger domain containing protein; zinc 4e-57
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 2e-56
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 1e-55
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 7e-55
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 7e-55
3o47_A329 ADP-ribosylation factor GTPase-activating protein 2e-46
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 3e-43
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 2e-42
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 1e-41
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 6e-41
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 4e-37
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 7e-37
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 5e-36
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 3e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
 Score =  181 bits (460), Expect = 4e-57
 Identities = 47/117 (40%), Positives = 77/117 (65%), Gaps = 1/117 (0%)

Query: 8   DKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNL 67
            ++  F+ ++ + EN+ CFDC ++NPTW S+++ +F+C++CS+ HR +GVHISFVRS++L
Sbjct: 22  LRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDL 81

Query: 68  DSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGK-IEAKYTSRAAELYKQILAKEVAK 123
           D ++  QL  M  GGN RA+ +FKQ    +     +   +S     YKQIL  E+++
Sbjct: 82  DKFTPIQLVRMDIGGNGRARNYFKQVLGVNFSPKTKEYASSICGRQYKQILDSEISE 138
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 100.0
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 100.0
2owa_A138 Arfgap-like finger domain containing protein; zinc 100.0
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 100.0
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.97
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.96
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 99.95
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.93
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.93
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.92
1gnf_A46 Transcription factor GATA-1; zinc finger, transcri 88.84
3dfx_A63 Trans-acting T-cell-specific transcription factor 85.98
2vut_I43 AREA, nitrogen regulatory protein AREA; transcript 82.8
4gat_A66 Nitrogen regulatory protein AREA; DNA binding prot 80.4
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.6e-41  Score=298.09  Aligned_cols=126  Identities=52%  Similarity=0.935  Sum_probs=120.9

Q ss_pred             CCCcchhhHHHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCC-CCHHHHHHHh
Q 018505            1 MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMV   79 (355)
Q Consensus         1 M~~~~~~~~~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~-W~~~~l~~m~   79 (355)
                      |+++..++.+++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||.||+|||+||||+||+ |+++||++|+
T Consensus         8 m~~~~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~   87 (149)
T 2crw_A            8 MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQ   87 (149)
T ss_dssp             SCCCCHHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHH
Confidence            888999999999999999999999999999999999999999999999999999999999999999996 9999999999


Q ss_pred             cCChHHHHHHHhhcCCCCCCccccccccHHHHHHHHHHHHHHHHHhhh
Q 018505           80 YGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAE  127 (355)
Q Consensus        80 ~gGN~~an~~~e~~g~~~~~~i~~KY~~raa~~Yr~~l~~~v~k~~~~  127 (355)
                      .+||.++|+||++++... .+|++||.++++.+||++|.+.+++....
T Consensus        88 ~~GN~~an~~~e~~~~~~-~~i~~KY~s~~a~~Yr~~l~~~~~~~~~~  134 (149)
T 2crw_A           88 VGGNASASSFFHQHGCST-NDTNAKYNSRAAQLYREKIKSLASQATRK  134 (149)
T ss_dssp             TTCHHHHHHHHHHHCCCC-CCHHHHTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHhcCCCC-cchhhCcCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998864 78999999999999999999998888754
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Back     alignment and structure
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Back     alignment and structure
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Back     alignment and structure
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 355
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 2e-35
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (310), Expect = 2e-35
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)

Query: 12  VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS 71
           +  +++  + N +C DC A +PTW S   GI  CI+CS +HR LGVH S ++S  LD   
Sbjct: 5   IISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLG 64

Query: 72  AEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQ--ILAKEVAK 123
             +L +    GN       +    ++      K    +  + ++  I AK + +
Sbjct: 65  TSELLLAKNIGNAGFNEIMECCLPSEDPV---KPNPGSDMIARKDYITAKYMER 115

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 88.99
d1y0ja139 Erythroid transcription factor GATA-1 {Mouse (Mus 84.3
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.8e-35  Score=245.31  Aligned_cols=85  Identities=33%  Similarity=0.613  Sum_probs=82.6

Q ss_pred             HHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhcCChHHHHHH
Q 018505           10 NLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVF   89 (355)
Q Consensus        10 ~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~an~~   89 (355)
                      +++|++|++.|+|++|||||+++|+|||+|||||||+.|||+||.||+|||+|||++||.|++++|++|+.+||..+|++
T Consensus         3 ~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~~   82 (122)
T d1dcqa2           3 KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEI   82 (122)
T ss_dssp             HHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcC
Q 018505           90 FKQHG   94 (355)
Q Consensus        90 ~e~~g   94 (355)
                      |+++.
T Consensus        83 ~ea~~   87 (122)
T d1dcqa2          83 MECCL   87 (122)
T ss_dssp             HTTTC
T ss_pred             HHhhC
Confidence            99763
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure