Citrus Sinensis ID: 018510

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
MAKYGGSLLVPSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISKFPVIDMQSLLSEESVDSELANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSLLDYMRIEHSQV
ccccccccccHHHHHHHHccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHcccccccEEEccccccccccccccEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEcccccccccccccccccccccccEEEEEccccccEEEEEccEEEEcccccccEEEEEccEEEEEEcccccccccEEEccccccEEEEEEEcccccccEEEccccccccccccccccccHHHHHHHHHcccccccccccccccccccc
ccccccccccHHHHHHHHcccccccHHcEcccccccccccccccccccEEEHHHccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEEEEEccccccHHHHEEEEcccHHcccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcEEEEEEEEEcccccccccccEEEEcccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEccccccEEcccHHHcccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHccc
makyggsllvpsvqelaenpmvavppryirpeqdapvisdntliskfpvidmqsllseesvdSELANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKywqypgevegfGQAFVVSeeqrldwgdlffmttlpvhlrkphlfpklppslrdtLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSmrmnyyppcpqpgkvmgltphsdSVALTILLQINEAeglqikkdgkwfpvrplpnafiVNIGDMLEvitngvypsiehravvnseqERLSIATFHLVKydgevgpapslitektpalfRRVTTEEFLKAVFSRELHEKSLLDYMRIEHSQV
MAKYGGSLLVPSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISKFPVIDMQSLLSEESVDSELANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEvgpapslitektpalfRRVTTEEFLKAVFsrelhekslldymriehsqv
MAKYGGSLLVPSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISKFPVIDMQsllseesvdselANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSLLDYMRIEHSQV
***************************YI*****APVISDNTLISKFPVIDMQSLLSEESVDSELANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSLLDYM*******
******S*LVPSVQELAENPMVAVPPRYIRPEQ***********SKFPVIDMQSLLSEES*DSELANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSLLDYMRIE****
MAKYGGSLLVPSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISKFPVIDMQSLLSEESVDSELANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSLLDYMRIEHSQV
*******LLVPSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISKFPVIDMQSLLSEESVDSELANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSLLDYMRIEHS**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAKYGGSLLVPSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISKFPVIDMQSLLSEESVDSELANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSLLDYMRIEHSQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query355 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.983 0.974 0.623 1e-129
D4N500364 Thebaine 6-O-demethylase N/A no 0.977 0.953 0.552 1e-110
D4N501364 Probable 2-oxoglutarate/F N/A no 0.977 0.953 0.555 1e-109
D4N502360 Codeine O-demethylase OS= N/A no 0.974 0.961 0.537 1e-105
A2A1A0352 S-norcoclaurine synthase N/A no 0.963 0.971 0.438 3e-80
Q96323356 Leucoanthocyanidin dioxyg no no 0.932 0.929 0.328 2e-47
Q9M547334 Flavonol synthase/flavano N/A no 0.887 0.943 0.341 2e-46
P51091357 Leucoanthocyanidin dioxyg N/A no 0.929 0.924 0.337 7e-46
O04274362 Leucoanthocyanidin dioxyg N/A no 0.921 0.903 0.332 2e-45
P51092430 Leucoanthocyanidin dioxyg N/A no 0.884 0.730 0.337 3e-45
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  461 bits (1185), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/353 (62%), Positives = 274/353 (77%), Gaps = 4/353 (1%)

Query: 2   AKYGGSLLVPSVQELA-ENPMVAVPPRYIRPEQDAPVISDNTLIS-KFPVIDMQSLLSEE 59
           A    S+LVPSVQE+  E  +  VPPRY+R +QD   + D+  +  + P+IDM+ L S  
Sbjct: 6   AAQWSSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSST 65

Query: 60  SVDSELANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVE 119
           ++DSE+  LDFAC+EWGFFQLVNHG+  + +DKVK EIQ+FFNL MEEKKK+WQ P E+E
Sbjct: 66  TMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIE 125

Query: 120 GFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNL 179
           GFGQAFVVSE+Q+LDW DLFF T  PV LRKPHLFPKLP   RDTLE+YS+EV ++A  L
Sbjct: 126 GFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKIL 185

Query: 180 ISRMAKVLHIKDEEVREFFE--NGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQI 237
           I++MA+ L IK EE+ + F+  + +QSMRMNYYPPCPQP +V+GLTPHSDSV LT+L+Q+
Sbjct: 186 IAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQV 245

Query: 238 NEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIAT 297
           N+ EGLQIKKDGKW PV+PLPNAFIVNIGD+LE+ITNG Y SIEHR VVNSE+ERLSIAT
Sbjct: 246 NDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIAT 305

Query: 298 FHLVKYDGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSLLDYMRI 350
           FH V    EVGPA SL+  +  A F+R+T +E+   +FSR L  K+ LD +RI
Sbjct: 306 FHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358

Arabidopsis thaliana (taxid: 3702)
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q96323|LDOX_ARATH Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|P51091|LDOX_MALDO Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1 Back     alignment and function description
>sp|O04274|LDOX_PERFR Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1 Back     alignment and function description
>sp|P51092|LDOX_PETHY Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
224061385355 predicted protein [Populus trichocarpa] 0.985 0.985 0.678 1e-143
224061381359 predicted protein [Populus trichocarpa] 0.997 0.986 0.646 1e-138
255575141364 Leucoanthocyanidin dioxygenase, putative 0.971 0.947 0.665 1e-137
225453297364 PREDICTED: protein SRG1 [Vitis vinifera] 0.963 0.939 0.658 1e-132
224061027362 predicted protein [Populus trichocarpa] 0.991 0.972 0.624 1e-130
225462507366 PREDICTED: protein SRG1 [Vitis vinifera] 1.0 0.969 0.594 1e-130
363807040358 uncharacterized protein LOC100777264 [Gl 0.974 0.966 0.661 1e-127
15219988358 protein SRG1 [Arabidopsis thaliana] gi|7 0.983 0.974 0.623 1e-127
297844634358 hypothetical protein ARALYDRAFT_889094 [ 0.983 0.974 0.623 1e-127
255557471366 Flavonol synthase/flavanone 3-hydroxylas 0.994 0.964 0.589 1e-126
>gi|224061385|ref|XP_002300453.1| predicted protein [Populus trichocarpa] gi|222847711|gb|EEE85258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 238/351 (67%), Positives = 286/351 (81%), Gaps = 1/351 (0%)

Query: 1   MAKYGGSLLVPSVQELAENPMVAVPPRYIRPEQDAP-VISDNTLISKFPVIDMQSLLSEE 59
           + ++G SL+VP VQELA+    A+PPRYIRP+QD P +I     +++ PV+DMQ LL +E
Sbjct: 5   VVQFGSSLIVPCVQELAKVNTAAIPPRYIRPDQDQPTIIPSCASVNEIPVVDMQRLLDQE 64

Query: 60  SVDSELANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVE 119
           S+DSELA L  ACR+WGFFQLVNH VS +L++KVK ++Q+FFNL MEEKK +WQYPGEVE
Sbjct: 65  SMDSELAKLHLACRDWGFFQLVNHEVSASLLEKVKTDVQDFFNLPMEEKKLFWQYPGEVE 124

Query: 120 GFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNL 179
           GFGQAFVVSEEQ+LDWGDLFFM T PVH RKPHLFPKLP   RDT+E +S E+  L + +
Sbjct: 125 GFGQAFVVSEEQKLDWGDLFFMVTQPVHARKPHLFPKLPLPFRDTVEAFSLELKNLGITI 184

Query: 180 ISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINE 239
           + +MAK L I+ EEV E F NG QSMRMNYYPPCPQP KV+GLTPHSD+V LTILLQ+NE
Sbjct: 185 LGKMAKALKIEAEEVEELFGNGFQSMRMNYYPPCPQPDKVIGLTPHSDAVGLTILLQVNE 244

Query: 240 AEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFH 299
            EGLQ+KKDGKW PV+PLPNAFI N+GD+LE+ITNG Y SIEHRA VNSE+ERLSIATF 
Sbjct: 245 VEGLQVKKDGKWVPVKPLPNAFIFNVGDILEIITNGTYRSIEHRATVNSEKERLSIATFL 304

Query: 300 LVKYDGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSLLDYMRI 350
              YDG +GPA SL+TE+TPA+F+  TTEE+ K +F+RELHEKS LD MRI
Sbjct: 305 SPNYDGVIGPASSLVTEQTPAMFKSTTTEEYFKGLFARELHEKSYLDVMRI 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061381|ref|XP_002300451.1| predicted protein [Populus trichocarpa] gi|222847709|gb|EEE85256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255575141|ref|XP_002528475.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223532084|gb|EEF33892.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225453297|ref|XP_002268288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061027|ref|XP_002300322.1| predicted protein [Populus trichocarpa] gi|222847580|gb|EEE85127.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225462507|ref|XP_002269087.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297740615|emb|CBI30797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|363807040|ref|NP_001242069.1| uncharacterized protein LOC100777264 [Glycine max] gi|255645137|gb|ACU23067.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15219988|ref|NP_173145.1| protein SRG1 [Arabidopsis thaliana] gi|75220747|sp|Q39224.1|SRG1_ARATH RecName: Full=Protein SRG1; Short=AtSRG1; AltName: Full=Protein SENESCENCE-RELATED GENE 1 gi|5734767|gb|AAD50032.1|AC007651_27 SRG1 Protein [Arabidopsis thaliana] gi|479047|emb|CAA55654.1| SRG1 [Arabidopsis thaliana] gi|15081819|gb|AAK82564.1| F6I1.30/F6I1.30 [Arabidopsis thaliana] gi|22655018|gb|AAM98100.1| At1g17020/F6I1.30 [Arabidopsis thaliana] gi|332191410|gb|AEE29531.1| protein SRG1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297844634|ref|XP_002890198.1| hypothetical protein ARALYDRAFT_889094 [Arabidopsis lyrata subsp. lyrata] gi|297336040|gb|EFH66457.1| hypothetical protein ARALYDRAFT_889094 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255557471|ref|XP_002519766.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223541183|gb|EEF42739.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.969 0.960 0.614 4.5e-114
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.971 0.955 0.607 2.6e-111
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.969 0.966 0.570 2.5e-106
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.960 0.966 0.567 2.5e-106
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.980 0.977 0.531 2.7e-100
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.960 0.936 0.412 6.7e-72
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.890 0.895 0.384 4.8e-62
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.895 0.857 0.365 3.9e-60
TAIR|locus:2082058363 JRG21 "jasmonate-regulated gen 0.949 0.928 0.354 1.4e-55
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.884 0.902 0.35 7e-54
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
 Identities = 214/348 (61%), Positives = 265/348 (76%)

Query:     7 SLLVPSVQELA-ENPMVAVPPRYIRPEQDAPVISDNTLIS-KFPVIDMQXXXXXXXXXXX 64
             S+LVPSVQE+  E  +  VPPRY+R +QD   + D+  +  + P+IDM+           
Sbjct:    11 SILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSE 70

Query:    65 XANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQA 124
                LDFAC+EWGFFQLVNHG+  + +DKVK EIQ+FFNL MEEKKK+WQ P E+EGFGQA
Sbjct:    71 VEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQA 130

Query:   125 FVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMA 184
             FVVSE+Q+LDW DLFF T  PV LRKPHLFPKLP   RDTLE+YS+EV ++A  LI++MA
Sbjct:   131 FVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMA 190

Query:   185 KVLHIKDEEVREFFEN--GLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINEAEG 242
             + L IK EE+ + F++   +QSMRMNYYPPCPQP +V+GLTPHSDSV LT+L+Q+N+ EG
Sbjct:   191 RALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEG 250

Query:   243 LQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVK 302
             LQIKKDGKW PV+PLPNAFIVNIGD+LE+ITNG Y SIEHR VVNSE+ERLSIATFH V 
Sbjct:   251 LQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVG 310

Query:   303 YDGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSLLDYMRI 350
                EVGPA SL+  +  A F+R+T +E+   +FSR L  K+ LD +RI
Sbjct:   311 MYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
D4N501DIOX2_PAPSO1, ., 1, 4, ., 1, 1, ., -0.55520.97740.9532N/Ano
D4N502DIOX3_PAPSO1, ., 1, 4, ., 1, 1, ., 3, 20.53760.97460.9611N/Ano
Q39224SRG1_ARATHNo assigned EC number0.62320.98300.9748yesno
D4N500DIOX1_PAPSO1, ., 1, 4, ., 1, 1, ., 3, 10.55240.97740.9532N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.963
4th Layer1.14.11.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
PLN02216357 PLN02216, PLN02216, protein SRG1 0.0
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-118
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-102
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 9e-81
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-80
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-73
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 3e-72
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 4e-69
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-64
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-63
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-62
PLN02904357 PLN02904, PLN02904, oxidoreductase 1e-56
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 6e-56
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 3e-52
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 9e-52
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-51
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 1e-48
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-45
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 9e-40
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 1e-36
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 1e-34
PLN02485329 PLN02485, PLN02485, oxidoreductase 3e-33
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-32
PLN02997325 PLN02997, PLN02997, flavonol synthase 5e-32
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 1e-30
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-27
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 2e-19
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 1e-10
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  512 bits (1321), Expect = 0.0
 Identities = 217/347 (62%), Positives = 271/347 (78%), Gaps = 3/347 (0%)

Query: 7   SLLVPSVQELAENPMV-AVPPRYIRPEQD-APVISDNTLISKFPVIDMQSLLSEESVDSE 64
           S++VPSVQE+ +  M+  VPPRY+R +QD   +  D+ L S+ P+IDM+ L S  ++DSE
Sbjct: 11  SIIVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSE 70

Query: 65  LANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQA 124
           +  LDFAC+EWGFFQLVNHG+  + +DKVK EIQ+FFNL MEEKKK WQ PGE+EGFGQA
Sbjct: 71  VEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQA 130

Query: 125 FVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMA 184
           FVVSE+Q+LDW D+FF+T  PV LRKPHLFPKLP   RDTLE YS EV ++A  L ++MA
Sbjct: 131 FVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMA 190

Query: 185 KVLHIKDEEVREFFENGL-QSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINEAEGL 243
             L IK EE+ + F++ L QS+RMNYYPPCPQP +V+GLTPHSD+V LTILLQ+NE EGL
Sbjct: 191 SALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGL 250

Query: 244 QIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKY 303
           QIKKDGKW  V+PLPNA +VN+GD+LE+ITNG Y SIEHR VVNSE+ERLS+ATFH    
Sbjct: 251 QIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGM 310

Query: 304 DGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSLLDYMRI 350
             E+GPA SL+  +  ALF+ +TT+E+   +FSREL  K+ LD MRI
Sbjct: 311 GKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI 357

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 355
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02904357 oxidoreductase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.88
PLN03176120 flavanone-3-hydroxylase; Provisional 99.85
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.67
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.38
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.37
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 91.82
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 91.41
TIGR02466201 conserved hypothetical protein. This family consis 87.42
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 85.5
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=2.4e-83  Score=613.74  Aligned_cols=342  Identities=63%  Similarity=1.075  Sum_probs=306.5

Q ss_pred             CchhHHHHHhC-CCCCCCCCCCCCCCCCCCCC-CCCCCCCCceeeCCCCCCCCchhHHHHHHHHHHhhcceEEEEecCCC
Q 018510            9 LVPSVQELAEN-PMVAVPPRYIRPEQDAPVIS-DNTLISKFPVIDMQSLLSEESVDSELANLDFACREWGFFQLVNHGVS   86 (355)
Q Consensus         9 ~~~~~~~~~~~-~~~~ip~~~~~~~~~~~~~~-~~~~~~~iPvIDls~l~~~d~~~~~~~~l~~A~~~~Gff~l~nhgi~   86 (355)
                      +++.|+.|+.. ++.+||++|++|+++++... .+....+||+|||+.+.+++..++++++|.+||++||||||+||||+
T Consensus        13 ~~~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~   92 (357)
T PLN02216         13 IVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGID   92 (357)
T ss_pred             cchhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCC
Confidence            36779999886 88999999999998875321 11122589999999987665434477999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHhhhccCCCCcccccccccccccccCCcccccccccCcccCCCCCCCCCCCccHHHHHH
Q 018510           87 LALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLE  166 (355)
Q Consensus        87 ~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~  166 (355)
                      .++++++++++++||+||.|+|+++...++..+||+........+..||+|.+++...|.....+|.||+.++.||++++
T Consensus        93 ~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~  172 (357)
T PLN02216         93 SSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLE  172 (357)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHH
Confidence            99999999999999999999999997655567899765443445678999999877666556778999998899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhhc-ccceeeeeccCCCCCCCCcccccCccCCCceEEEEeCCCCCceeE
Q 018510          167 VYSTEVNALAMNLISRMAKVLHIKDEEVREFFEN-GLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINEAEGLQI  245 (355)
Q Consensus       167 ~y~~~~~~la~~ll~~l~~~Lgl~~~~~~~~~~~-~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTll~q~~~~~GLqv  245 (355)
                      +|+++|.+|+.+||++|+++||+++++|.+.+.. ..+.||++|||||++++..+|+++|||+|+||||+|+++++||||
T Consensus       173 ~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV  252 (357)
T PLN02216        173 TYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQI  252 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeE
Confidence            9999999999999999999999999999998876 457899999999998888999999999999999999556999999


Q ss_pred             eeCCeeEeccCCCCeEEEEecchhhhhhCCcccccccccccCCCCCeeEEEEeecCCCCcEEecCCCccCCCCCCCCCcc
Q 018510          246 KKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEVGPAPSLITEKTPALFRRV  325 (355)
Q Consensus       246 ~~~g~W~~V~p~~g~~vVnvGd~L~~~TnG~~~s~~HRVv~~~~~~R~Si~~F~~p~~d~~i~pl~~~~~~~~~~~y~~~  325 (355)
                      +++|+|++|+|+||++|||+||+||+||||+||||+|||+.++.++|||++||+.|+.|++|.|+|+|+++++|++|+++
T Consensus       253 ~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~  332 (357)
T PLN02216        253 KKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSL  332 (357)
T ss_pred             EECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCc
Confidence            99999999999999999999999999999999999999998888899999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhhcccccccchhhcc
Q 018510          326 TTEEFLKAVFSRELHEKSLLDYMRI  350 (355)
Q Consensus       326 ~~~e~~~~~~~~~~~~~~~~~~~~~  350 (355)
                      +++||++.++++.+.+++.++.+||
T Consensus       333 t~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        333 TTKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             CHHHHHHHHHhcccCCcchhhhhcC
Confidence            9999999999999999999998886

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 7e-47
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 8e-47
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-45
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-35
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 8e-21
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 3e-13
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 5e-06
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 6e-06
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  184 bits (467), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 10  VPSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISK------FPVIDMQXXXXXXXXXX 63
           V  V+ LA++ ++++P  YIRP+++   I+D  L  K       P ID++          
Sbjct: 3   VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 62
Query: 64  XXA--NLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVE 119
                 L  A  +WG   L+NHG+   L+++VKK  +EFF+LS+EEK+KY   Q  G+++
Sbjct: 63  ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 122
Query: 120 GFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNL 179
           G+G     +   +L+W D FF    P   R   ++PK P    +    Y+  +  LA  +
Sbjct: 123 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 182
Query: 180 ISRMAKVLHIKDEEVRE---FFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQ 236
              ++  L ++ + + +     E  L  M++NYYP CPQP   +G+  H+D  ALT +L 
Sbjct: 183 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 242
Query: 237 INEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIA 296
            N   GLQ+  +GKW   + +P++ +++IGD LE+++NG Y SI HR +VN E+ R+S A
Sbjct: 243 -NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 301
Query: 297 TFHLVKYDGEV-GPAPSLITEKTPALF-RRVTTEEFLKAVFSRELHE 341
            F     D  V  P P +++ ++PA F  R   +     +F +E  E
Sbjct: 302 VFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 348
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-160
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-143
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 1e-93
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 3e-84
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 3e-77
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 3e-73
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  450 bits (1161), Expect = e-160
 Identities = 113/358 (31%), Positives = 195/358 (54%), Gaps = 19/358 (5%)

Query: 8   LLVPSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISK------FPVIDMQSLLSEESV 61
           + V  V+ LA++ ++++P  YIRP+++   I+D  L  K       P ID++++ S++  
Sbjct: 2   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61

Query: 62  DSE--LANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGE 117
             E  +  L  A  +WG   L+NHG+   L+++VKK  +EFF+LS+EEK+KY   Q  G+
Sbjct: 62  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 121

Query: 118 VEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAM 177
           ++G+G     +   +L+W D FF    P   R   ++PK P    +    Y+  +  LA 
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 181

Query: 178 NLISRMAKVLHIKDEEVREFF---ENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTIL 234
            +   ++  L ++ + + +     E  L  M++NYYP CPQP   +G+  H+D  ALT +
Sbjct: 182 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 241

Query: 235 LQINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLS 294
           L  N   GLQ+  +GKW   + +P++ +++IGD LE+++NG Y SI HR +VN E+ R+S
Sbjct: 242 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300

Query: 295 IATFHLVKYDGEV-GPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSLLDYMRIE 351
            A F     D  V  P P +++ ++PA F   T  + ++     +L  K   + +  +
Sbjct: 301 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE----HKLFGKEQEELVSEK 354
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 96.11
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.43
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 91.5
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 86.49
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 83.46
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 82.81
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 82.37
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=4.1e-82  Score=606.09  Aligned_cols=335  Identities=32%  Similarity=0.608  Sum_probs=300.1

Q ss_pred             CchhHHHHHhCCCCCCCCCCCCCCCCCCCCCC---CC---CCCCCceeeCCCCCCCCch--hHHHHHHHHHHhhcceEEE
Q 018510            9 LVPSVQELAENPMVAVPPRYIRPEQDAPVISD---NT---LISKFPVIDMQSLLSEESV--DSELANLDFACREWGFFQL   80 (355)
Q Consensus         9 ~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~---~~---~~~~iPvIDls~l~~~d~~--~~~~~~l~~A~~~~Gff~l   80 (355)
                      ++++||+|+++|+.+||+.|++|+++++....   ..   ...+||||||+.+.+++..  .+.+++|.+||++||||||
T Consensus         3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v   82 (356)
T 1gp6_A            3 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL   82 (356)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             CcccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEE
Confidence            57889999999999999999999877654321   00   0246999999999765542  2356999999999999999


Q ss_pred             EecCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCC--CCcccccccccccccccCCcccccccccCcccCCCCCCCCCCC
Q 018510           81 VNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYP--GEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLP  158 (355)
Q Consensus        81 ~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~  158 (355)
                      +||||+.++++++++.+++||+||.|+|+++....  ..++||+........+..||+|.|++...|.....+|.||+.+
T Consensus        83 ~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~  162 (356)
T 1gp6_A           83 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP  162 (356)
T ss_dssp             ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSS
T ss_pred             eCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcc
Confidence            99999999999999999999999999999997754  3689998766555567889999999887665446789999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhh---cccceeeeeccCCCCCCCCcccccCccCCCceEEEE
Q 018510          159 PSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFE---NGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILL  235 (355)
Q Consensus       159 ~~fr~~~~~y~~~~~~la~~ll~~l~~~Lgl~~~~~~~~~~---~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTll~  235 (355)
                      +.||+.+++|+++|.+|+..||++|+++||+++++|.+.+.   .+.+.||++|||||++++..+|+++|||+|+||||+
T Consensus       163 ~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~  242 (356)
T 1gp6_A          163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  242 (356)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEE
Confidence            99999999999999999999999999999999999999987   467899999999999888889999999999999999


Q ss_pred             eCCCCCceeEeeCCeeEeccCCCCeEEEEecchhhhhhCCcccccccccccCCCCCeeEEEEeecCCCCc-EEecCCCcc
Q 018510          236 QINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDG-EVGPAPSLI  314 (355)
Q Consensus       236 q~~~~~GLqv~~~g~W~~V~p~~g~~vVnvGd~L~~~TnG~~~s~~HRVv~~~~~~R~Si~~F~~p~~d~-~i~pl~~~~  314 (355)
                      | ++++||||+++|+|++|+|+||++|||+||+||+||||+||||+|||+.++..+|||++||++|+.|+ +|.|+++|+
T Consensus       243 q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~  321 (356)
T 1gp6_A          243 H-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV  321 (356)
T ss_dssp             E-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGC
T ss_pred             E-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhc
Confidence            9 57999999999999999999999999999999999999999999999998888999999999999999 999999999


Q ss_pred             CCCCCCCCCcccHHHHHHHHHhhccccccc
Q 018510          315 TEKTPALFRRVTTEEFLKAVFSRELHEKSL  344 (355)
Q Consensus       315 ~~~~~~~y~~~~~~e~~~~~~~~~~~~~~~  344 (355)
                      ++++|++|++++++||+..+++.+++|+..
T Consensus       322 ~~~~p~~y~~~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          322 SVESPAKFPPRTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             CSSSCCSSCCEEHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCccCCCccHHHHHHHHHHhccCcchh
Confidence            998999999999999999999998877653
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 355
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 8e-80
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-65
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 5e-56
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-46
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  246 bits (627), Expect = 8e-80
 Identities = 112/349 (32%), Positives = 192/349 (55%), Gaps = 16/349 (4%)

Query: 8   LLVPSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISK------FPVIDMQSLLSEESV 61
           + V  V+ LA++ ++++P  YIRP+++   I+D  L  K       P ID++++ S++  
Sbjct: 1   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 60

Query: 62  DSE--LANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYP--GE 117
             E  +  L  A  +WG   L+NHG+   L+++VKK  +EFF+LS+EEK+KY      G+
Sbjct: 61  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 120

Query: 118 VEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAM 177
           ++G+G     +   +L+W D FF    P   R   ++PK P    +    Y+  +  LA 
Sbjct: 121 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 180

Query: 178 NLISRMAKVLHIKDEEVREFF---ENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTIL 234
            +   ++  L ++ + + +     E  L  M++NYYP CPQP   +G+  H+D  ALT  
Sbjct: 181 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT-F 239

Query: 235 LQINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLS 294
           +  N   GLQ+  +GKW   + +P++ +++IGD LE+++NG Y SI HR +VN E+ R+S
Sbjct: 240 ILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 299

Query: 295 IATFHLVKYDGEV-GPAPSLITEKTPALFRRVTTEEFLKA-VFSRELHE 341
            A F     D  V  P P +++ ++PA F   T  + ++  +F +E  E
Sbjct: 300 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 348
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 91.12
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 86.2
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.6e-78  Score=574.87  Aligned_cols=328  Identities=32%  Similarity=0.607  Sum_probs=287.6

Q ss_pred             CchhHHHHHhCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCceeeCCCCCCCCchh--HHHHHHHHHHhhcceEEE
Q 018510            9 LVPSVQELAENPMVAVPPRYIRPEQDAPVIS------DNTLISKFPVIDMQSLLSEESVD--SELANLDFACREWGFFQL   80 (355)
Q Consensus         9 ~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~------~~~~~~~iPvIDls~l~~~d~~~--~~~~~l~~A~~~~Gff~l   80 (355)
                      ++..||+|++.|+.+||+.|++|+.+++...      .+....+||||||+.+.+++...  +.+++|.+||+++|||||
T Consensus         2 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l   81 (349)
T d1gp6a_           2 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL   81 (349)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             CCcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEE
Confidence            4678999999999999999999998876541      23446789999999998776542  356999999999999999


Q ss_pred             EecCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCC--CCcccccccccccccccCCcccccccccCcccCCCCCCCCCCC
Q 018510           81 VNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYP--GEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLP  158 (355)
Q Consensus        81 ~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~  158 (355)
                      +||||+.+++++++++++.||+||.|+|+++....  +.+.||+...........+|.+.+.....+.....+|.||+.+
T Consensus        82 ~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~  161 (349)
T d1gp6a_          82 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP  161 (349)
T ss_dssp             ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSS
T ss_pred             EccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhccccccccccccccccccc
Confidence            99999999999999999999999999999997643  3455565544444455666666554444444556789999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhh---cccceeeeeccCCCCCCCCcccccCccCCCceEEEE
Q 018510          159 PSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFE---NGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILL  235 (355)
Q Consensus       159 ~~fr~~~~~y~~~~~~la~~ll~~l~~~Lgl~~~~~~~~~~---~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTll~  235 (355)
                      +.|++.+.+|+++|.+++..|+++++++||+++++|.+.+.   ...+.||++|||+++.+...+|+++|||+|+||||+
T Consensus       162 ~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~  241 (349)
T d1gp6a_         162 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  241 (349)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEe
Confidence            99999999999999999999999999999999999988764   346789999999999888899999999999999999


Q ss_pred             eCCCCCceeEeeCCeeEeccCCCCeEEEEecchhhhhhCCcccccccccccCCCCCeeEEEEeecCCCCcEE-ecCCCcc
Q 018510          236 QINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEV-GPAPSLI  314 (355)
Q Consensus       236 q~~~~~GLqv~~~g~W~~V~p~~g~~vVnvGd~L~~~TnG~~~s~~HRVv~~~~~~R~Si~~F~~p~~d~~i-~pl~~~~  314 (355)
                      | +.++||||+.+|+|++|+|.+|++|||+||+||+||||+||||+|||+.+++++||||+||++|+.|++| .|||+|+
T Consensus       242 q-~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v  320 (349)
T d1gp6a_         242 H-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV  320 (349)
T ss_dssp             E-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGC
T ss_pred             c-cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHc
Confidence            9 6899999999999999999999999999999999999999999999999988999999999999999865 8999999


Q ss_pred             CCCCCCCCCcccHHHHHHHHHhh
Q 018510          315 TEKTPALFRRVTTEEFLKAVFSR  337 (355)
Q Consensus       315 ~~~~~~~y~~~~~~e~~~~~~~~  337 (355)
                      ++++|++|+|+|++||+++++..
T Consensus       321 ~~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         321 SVESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             CSSSCCSSCCEEHHHHHHHHHHH
T ss_pred             CCCCCCCCCCccHHHHHHHHHhc
Confidence            99999999999999999988743
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure