Citrus Sinensis ID: 018511

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----

MEASCSLRSSKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEV

cccEEcccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEccccccccccccEEEEEEccccccccEEEEccccccccHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEccccEEEEEEccccccccEEEcccccccHHHHHHHcccccccccccEEEEEc

cccHEEEcccccccccccccccccHHccccccccccccccccccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHccccccccEccccccccccccccEEEEEEcccccccEEEEEccHHEEcHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccEEccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEccHHccccccccEEEEcccccEEEEEEEcccccccEEEEEcccccHHHHHHHcccccccccccEEEEEc

meascslrsskfisppirpphhplsiastisisvirdpnfgsslrlVRRKNRFSirvsssdtlvaGSREVVSKKEEDLGDLkswmhknglppckvilkekpshnekhrpihyvaasedlqagdaafsvpNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKkqgkksfwlpYIRELDrqrgrgqlavespllwsetelayltgsptKAEILERAEGIKREYNELDTVWFMAgslfqqypydipteaFTFEIFKQAFVAVQSCVVHLQKVSLARRFalvplgppllaYSSKCKAMLAAVDDAVQLVVdrpykagesivvwcgpqpnskllinygfvdednpydrlvvev

meascslrsskfisppirpphhPLSIASTISISVIRDPNFGSSLRLVRRKNrfsirvsssdtlvagsrevvskkeedlgdlkswmhknglpPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAEllttnklsELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETElayltgsptkaEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGEsivvwcgpqpNSKLLINygfvdednpydrlvvev

MEASCSLRSSKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKamlaavddavqlvvdRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEV

*************************IASTISISVIRDPNFGSSLRLVRRKNRFSI****************************WMHKNGLPPCKVIL************IHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRL****

*********SK*********************************************************************LKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEV

*********SKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEV

****CSLRSSKFISPPIRPPHHPLSIAS******I************RRKNRFSIRVSS***************EEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEV

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		355	2.2.26 [Sep-21-2011]
B7ZUF3		582	Histone-lysine N-methyltr	yes	no	0.738	0.450	0.233	1e-12
B2KI88		594	Histone-lysine N-methyltr	N/A	no	0.738	0.441	0.237	6e-12
Q86TU7		594	Histone-lysine N-methyltr	yes	no	0.735	0.439	0.234	1e-11
B0VX69		595	Histone-lysine N-methyltr	yes	no	0.735	0.438	0.234	1e-11
A9X1D0		595	Histone-lysine N-methyltr	N/A	no	0.738	0.440	0.233	1e-11
B1MTJ4		595	Histone-lysine N-methyltr	N/A	no	0.735	0.438	0.234	1e-11
Q7SXS7		596	Histone-lysine N-methyltr	yes	no	0.645	0.384	0.237	1e-11
C1FXW2		589	Histone-lysine N-methyltr	N/A	no	0.735	0.443	0.234	1e-11
E2RBS6		588	Histone-lysine N-methyltr	yes	no	0.738	0.445	0.237	2e-11
B5FW36		595	Histone-lysine N-methyltr	N/A	no	0.735	0.438	0.234	2e-11

>sp\|B7ZUF3\|SETD3_XENTR Histone-lysine N-methyltransferase setd3 OS=Xenopus tropicalis GN=setd3 PE=2 SV=1	Back alignment and function desciption

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 136/291 (46%), Gaps = 29/291 (9%)

Query: 72  SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNS 131
            K+E+   +L  W  +NG       L E P           + A+ +++A +    VP  
Sbjct: 73  GKREDYFPELMEWCKENGASTDGFELVEFPEEG------FGLKATREIKAEELFLWVPRK 126

Query: 132 LVVTLERVLGNETIAELLTTNKLSELA---CLALYLMYEKKQGKKSFWLPYIRELDRQRG 188
           L++T+E   G+  +  L + +++ +      LA +L+ E+     SFWLPYI+ L  +  
Sbjct: 127 LLMTVESAKGS-VLGPLYSQDRILQAMGNITLAFHLLCERAD-PNSFWLPYIKTLPNE-- 182

Query: 189 RGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPY- 247
                 ++PL ++E E+ YL  +    ++  + +   R+Y      +F    + Q +P  
Sbjct: 183 -----YDTPLYFNEDEVQYLQSTQAILDVFSQYKNTARQY-----AYFY--KVIQTHPNA 230

Query: 248 -DIP-TEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFALVPLGPPLLAYSSKCKAMLAA 304
             +P  ++FTF+ ++ A  +V +    +     +R   AL+PL       +         
Sbjct: 231 NKLPLKDSFTFDDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNL 290

Query: 305 VDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEV 355
            DD  + V  + +K+GE I ++ G + N++ +I+ GF  E+N +DR+ +++
Sbjct: 291 EDDRCECVALQDFKSGEQIYIFYGTRSNAEFVIHNGFFFENNLHDRVKIKL 341

Histone methyltransferase that methylates 'Lys-36' of histone H3 (H3K36me). H3 'Lys-36' methylation represents a specific tag for epigenetic transcriptional activation.
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp\|B2KI88\|SETD3_RHIFE Histone-lysine N-methyltransferase setd3 OS=Rhinolophus ferrumequinum GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|Q86TU7\|SETD3_HUMAN Histone-lysine N-methyltransferase setd3 OS=Homo sapiens GN=SETD3 PE=1 SV=1	Back alignment and function description

>sp\|B0VX69\|SETD3_CALJA Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|A9X1D0\|SETD3_PAPAN Histone-lysine N-methyltransferase setd3 OS=Papio anubis GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B1MTJ4\|SETD3_CALMO Histone-lysine N-methyltransferase setd3 OS=Callicebus moloch GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|Q7SXS7\|SETD3_DANRE Histone-lysine N-methyltransferase setd3 OS=Danio rerio GN=setd3 PE=1 SV=1	Back alignment and function description

>sp\|C1FXW2\|SETD3_DASNO Histone-lysine N-methyltransferase setd3 OS=Dasypus novemcinctus GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|E2RBS6\|SETD3_CANFA Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B5FW36\|SETD3_OTOGA Histone-lysine N-methyltransferase setd3 OS=Otolemur garnettii GN=SETD3 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		355
449455876		521	PREDICTED: histone-lysine N-methyltransf	0.935	0.637	0.818	1e-159
225452167		509	PREDICTED: histone-lysine N-methyltransf	0.836	0.583	0.881	1e-157
359488614		515	PREDICTED: histone-lysine N-methyltransf	0.836	0.576	0.864	1e-155
224117488		502	SET domain protein [Populus trichocarpa]	0.952	0.673	0.775	1e-154
22326803		514	Rubisco methyltransferase family protein	0.977	0.675	0.757	1e-150
18377718		514	unknown protein [Arabidopsis thaliana]	0.977	0.675	0.757	1e-150
297807453		516	SET domain-containing protein [Arabidops	0.983	0.676	0.749	1e-149
296090251		428	unnamed protein product [Vitis vinifera]	0.760	0.630	0.918	1e-147
357497055		501	SET domain protein [Medicago truncatula]	0.895	0.634	0.8	1e-147
7573451		537	putative protein [Arabidopsis thaliana]	0.977	0.646	0.721	1e-147

>gi\|449455876\|ref\|XP_004145676.1\| PREDICTED: histone-lysine N-methyltransferase setd3-like [Cucumis sativus] gi\|449492872\|ref\|XP_004159127.1\| PREDICTED: histone-lysine N-methyltransferase setd3-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 280/342 (81%), Positives = 300/342 (87%), Gaps = 10/342 (2%)

Query: 21  HHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSR-------EVVSK 73
           H PL + S IS+S  R  +F +S   +RR N  S   SSS+TLVAGSR       E V+K
Sbjct: 24  HRPLLLLSKISVSAPRISHFSNSFSPIRRWNVCS--ASSSETLVAGSRKENGKTGEAVTK 81

Query: 74  KEED-LGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSL 132
           KE+D  GDLK+WMH NGLPPCKVIL+EKPSH++ HRPIHYVAASEDL+ GD AFSVPNSL
Sbjct: 82  KEDDEFGDLKAWMHDNGLPPCKVILEEKPSHDKNHRPIHYVAASEDLEVGDVAFSVPNSL 141

Query: 133 VVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQL 192
           VVTLERVLGNET+AELLTTNKLSELACLALYLMYEKKQGKKSFW PYIRELDRQRGRGQL
Sbjct: 142 VVTLERVLGNETVAELLTTNKLSELACLALYLMYEKKQGKKSFWYPYIRELDRQRGRGQL 201

Query: 193 AVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTE 252
           AVESPLLWSE EL YL+GSPTK E+LERAEGIK+EYNELDTVWFMAGSLFQQYPYDIPTE
Sbjct: 202 AVESPLLWSEDELDYLSGSPTKKEVLERAEGIKKEYNELDTVWFMAGSLFQQYPYDIPTE 261

Query: 253 AFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLV 312
           AF+FEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAY S CKAML AVD AV+LV
Sbjct: 262 AFSFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYRSNCKAMLTAVDGAVELV 321

Query: 313 VDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVE 354
           VDRPYKAGESI VWCGPQPNSKLL+NYGFVDEDN YDRLVVE
Sbjct: 322 VDRPYKAGESIAVWCGPQPNSKLLLNYGFVDEDNRYDRLVVE 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225452167\|ref\|XP_002264334.1\| PREDICTED: histone-lysine N-methyltransferase setd3 isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359488614\|ref\|XP_003633789.1\| PREDICTED: histone-lysine N-methyltransferase setd3 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224117488\|ref\|XP_002331687.1\| SET domain protein [Populus trichocarpa] gi\|222874165\|gb\|EEF11296.1\| SET domain protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi|22326803|ref|NP_196930.2| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|30684815|ref|NP_851038.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|42573363|ref|NP_974778.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|17473570|gb|AAL38260.1| putative protein [Arabidopsis thaliana] gi|23297671|gb|AAN13005.1| unknown protein [Arabidopsis thaliana] gi|332004624|gb|AED92007.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|332004625|gb|AED92008.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|332004626|gb|AED92009.1| Rubisco methyltransferase family protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|18377718\|gb\|AAL67009.1\| unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297807453\|ref\|XP_002871610.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297317447\|gb\|EFH47869.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|296090251\|emb\|CBI40070.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357497055\|ref\|XP_003618816.1\| SET domain protein [Medicago truncatula] gi\|355493831\|gb\|AES75034.1\| SET domain protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|7573451\|emb\|CAB87765.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		355
TAIR\|locus:2145663		514	AT5G14260 "AT5G14260" [Arabido	0.977	0.675	0.732	5e-131
TAIR\|locus:2077342		504	AT3G07670 [Arabidopsis thalian	0.909	0.640	0.279	7.3e-22
UNIPROTKB\|B7ZUF3		582	setd3 "Histone-lysine N-methyl	0.735	0.448	0.224	1.7e-10
UNIPROTKB\|F6R2J7		594	SETD3 "Uncharacterized protein	0.735	0.439	0.227	3e-10
UNIPROTKB\|B2KI88		594	SETD3 "Histone-lysine N-methyl	0.735	0.439	0.227	3.9e-10
UNIPROTKB\|B0VX69		595	SETD3 "Histone-lysine N-methyl	0.735	0.438	0.224	3.9e-10
UNIPROTKB\|Q86TU7		594	SETD3 "Histone-lysine N-methyl	0.735	0.439	0.224	5e-10
UNIPROTKB\|A9X1D0		595	SETD3 "Histone-lysine N-methyl	0.735	0.438	0.224	5e-10
UNIPROTKB\|B1MTJ4		595	SETD3 "Histone-lysine N-methyl	0.735	0.438	0.224	5e-10
UNIPROTKB\|F1SAQ4		595	SETD3 "Uncharacterized protein	0.732	0.436	0.232	6.6e-10

TAIR\|locus:2145663 AT5G14260 "AT5G14260" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
 Identities = 266/363 (73%), Positives = 290/363 (79%)

Query:     1 MEASCSLRSSKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSS 60
             ME   +   +K +S PIR    PLS  S  S+   R+    SS R V  +   S+ VSSS
Sbjct:     1 MEGVITCFHTKCVSLPIRS--FPLSRVS--SLPRWRNNKLISSSRSVHLR---SLCVSSS 53

Query:    61 DTLVA-GS-RE------VVSKKE-EDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIH 111
             DTLVA GS +E      V SKKE +D  DLK WM KNGLPPCKVILKE+P+H++KH+PIH
Sbjct:    54 DTLVASGSPKEDERQSKVSSKKEGDDSEDLKFWMDKNGLPPCKVILKERPAHDQKHKPIH 113

Query:   112 YVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQG 171
             YVAASEDLQ GD AFSVP+SLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQG
Sbjct:   114 YVAASEDLQKGDVAFSVPDSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQG 173

Query:   172 KKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNEL 231
             KKS W PYIRELDRQRGRGQL  ESPLLWSE EL YLTGSPTKAE+LERAEGIKREYNEL
Sbjct:   174 KKSVWYPYIRELDRQRGRGQLDAESPLLWSEAELDYLTGSPTKAEVLERAEGIKREYNEL 233

Query:   232 DTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPL 291
             DTVWFMAGSLFQQYP+DIPTEAF+FEIFKQAFVA+QSCVVHLQ V LARRFALVPLGPPL
Sbjct:   234 DTVWFMAGSLFQQYPFDIPTEAFSFEIFKQAFVAIQSCVVHLQNVGLARRFALVPLGPPL 293

Query:   292 LAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRL 351
             LAY S CK               RPYKAG+ IVVWCGPQPN+KLL+NYGFVDEDNPYDR+
Sbjct:   294 LAYCSNCKAMLTAVDGAVELVVDRPYKAGDPIVVWCGPQPNAKLLLNYGFVDEDNPYDRV 353

Query:   352 VVE 354
             +VE
Sbjct:   354 IVE 356

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR\|locus:2077342 AT3G07670 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|B7ZUF3 setd3 "Histone-lysine N-methyltransferase setd3" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|F6R2J7 SETD3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|B2KI88 SETD3 "Histone-lysine N-methyltransferase setd3" [Rhinolophus ferrumequinum (taxid:59479)]	Back alignment and assigned GO terms

UNIPROTKB\|B0VX69 SETD3 "Histone-lysine N-methyltransferase setd3" [Callithrix jacchus (taxid:9483)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)]	Back alignment and assigned GO terms

UNIPROTKB\|B1MTJ4 SETD3 "Histone-lysine N-methyltransferase setd3" [Callicebus moloch (taxid:9523)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SAQ4 SETD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		355
KOG1338		466	consensus Uncharacterized conserved protein [Funct	99.96
KOG1337		472	consensus N-methyltransferase [General function pr	99.95
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	99.65
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	97.93
KOG2589		453	consensus Histone tail methylase [Chromatin struct	96.16
KOG1085		392	consensus Predicted methyltransferase (contains a	92.9
KOG1079		739	consensus Transcriptional repressor EZH1 [Transcri	92.41
KOG1080		1005	consensus Histone H3 (Lys4) methyltransferase comp	88.95
KOG4442		729	consensus Clathrin coat binding protein/Huntingtin	88.73

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=99.96  E-value=1.2e-29  Score=241.93  Aligned_cols=248  Identities=21%  Similarity=0.284  Sum_probs=197.9

Q ss_pred             hcHHHHHHHHHhCC-CCCC-CcEEeecCCCCC-CCCceeeEEEccCCCCCCeEEEcCCCCccChhhhc--C-cchHH-Hh
Q 018511           76 EDLGDLKSWMHKNG-LPPC-KVILKEKPSHNE-KHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVL--G-NETIA-EL  148 (355)
Q Consensus        76 ~~~~~l~~Wl~~~G-~~~~-~v~i~~~~~~~g-~Grg~~Gl~A~~dI~~ge~li~IP~~~~ls~~~~~--~-~~~i~-~l  148 (355)
                      +-.+.|+.|++..+ ...+ +|.+.+.+.-.+ .|   +|++|+++|++|+.++.+|++.+++..+..  + -|+.. .+
T Consensus         7 d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G---~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~   83 (466)
T KOG1338|consen    7 DLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAG---AGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVL   83 (466)
T ss_pred             cHHHHHHHHHHHhhheeecccccccccchhhhhcc---cceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHH
Confidence            34789999999988 6554 888877665432 23   489999999999999999999999976532  2 13322 34


Q ss_pred             hccCCCChhHHHHHHHHHHhhcCCCCCcHHHHHHhcccCCCCccccCcccccCHhHHhccCCCchHHHHHHHHHHHHHHH
Q 018511          149 LTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREY  228 (355)
Q Consensus       149 l~~~~l~~~~~Lal~Ll~E~~~g~~S~W~pYl~~LP~~~~~~~~~~~~Pl~Ws~~el~~L~gt~l~~~~~~~~~~i~~~~  228 (355)
                      |  ++++.|..|++.|++|...+.+|+|.||++.+|++.     ..++|+||+++|+++|..+....+..+....|.++|
T Consensus        84 L--ne~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~-----rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~  156 (466)
T KOG1338|consen   84 L--NEVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPA-----RMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDF  156 (466)
T ss_pred             h--hcCCcHHHHHHHHHHHhhcccccccccHHHhCCChh-----hcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHH
Confidence            4  578999999999999998777799999999999986     589999999999997766666666777888899888


Q ss_pred             HHHHHHHHHhhhhhhcCCCCCCCCCcchhhHHHhheeeecceeecccc-----------ccccccccccCCCccccCCCC
Q 018511          229 NELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV-----------SLARRFALVPLGPPLLAYSSK  297 (355)
Q Consensus       229 ~~l~~~~~~~~~l~~~~~~~~~~~~~t~e~f~wA~~~V~SRa~~~~~~-----------~~~~~~~LvPl~D~l~NH~~~  297 (355)
                      ..+..      ++.+.+|..+  ..+++|+|..+++++.+-+|.+.-.           .-....+|+|..| +.||+..
T Consensus       157 i~~i~------pf~~~~p~vf--s~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad-~lNhd~~  227 (466)
T KOG1338|consen  157 IFVIQ------PFKQHCPIVF--SRPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIAD-FLNHDGL  227 (466)
T ss_pred             HHHHH------HHHHhCcchh--cccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhh-hhccchh
Confidence            87654      4455566443  3589999999999999988865311           0123578999999 5799876


Q ss_pred             -CceEEEeeCCeEEEEEcCCCCCCCeeecccCCCChHhhhhhCCcccC
Q 018511          298 -CKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDE  344 (355)
Q Consensus       298 -~~~~~~~~~~~~~l~a~r~i~~GeEI~i~YG~~~N~~LL~~YGFv~~  344 (355)
                       +|+.+.++++++.|+|+|+|++||||++.||.++|.  |++||.+.-
T Consensus       228 k~nanl~y~~NcL~mva~r~iekgdev~n~dg~~p~~--l~~l~ka~c  273 (466)
T KOG1338|consen  228 KANANLRYEDNCLEMVADRNIEKGDEVDNSDGLKPMG--LLKLTKALC  273 (466)
T ss_pred             hcccceeccCcceeeeecCCCCCccccccccccCcch--hhhhhhhcc
Confidence             899999999999999999999999999999999998  777776654

>KOG1337 consensus N-methyltransferase [General function prediction only]	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]	Back alignment and domain information

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]	Back alignment and domain information

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		355
3smt_A		497	Crystal Structure Of Human Set Domain-Containing Pr		1e-10

>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497

Back alignment and structure

Iteration: 1

Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 131/290 (45%), Gaps = 29/290 (10%) Query: 73 KKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSL 132 K+E+ DL W +NG V E + E+ + A+ D++A + VP L Sbjct: 73 KREDYFPDLXKWASENG---ASVEGFEXVNFKEEGFGLR---ATRDIKAEELFLWVPRKL 126 Query: 133 VVTLERVLGNETIAELLTTNKLSELA---CLALYLMYEKKQGKKSFWLPYIRELDRQRGR 189 + T+E N + L + +++ + LA +L+ E+ SFW PYI+ L + Sbjct: 127 LXTVESA-KNSVLGPLYSQDRILQAXGNIALAFHLLCERA-SPNSFWQPYIQTLPSE--- 181 Query: 190 GQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPY-- 247 ++PL + E E+ YL + ++ + + R+Y +F + Q +P+ Sbjct: 182 ----YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQY-----AYFY--KVIQTHPHAN 230 Query: 248 DIP-TEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFALVPLGPPLLAYSSKCKXXXXXX 305 +P ++FT+E ++ A +V + + +R AL+PL + Sbjct: 231 KLPLKDSFTYEDYRWAVSSVXTRQNQIPTEDGSRVTLALIPLWDXCNHTNGLITTGYNLE 290 Query: 306 XXXXXXXXXRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEV 355 + ++AGE I ++ G + N++ +I+ GF ++N +DR+ +++ Sbjct: 291 DDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKL 340

PyMOL of 3smt

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		355
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	3e-52
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	8e-44
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	1e-42
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497	Back alignment and structure

 Score =  179 bits (455), Expect = 3e-52
 Identities = 63/293 (21%), Positives = 125/293 (42%), Gaps = 23/293 (7%)

Query: 67  SREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAF 126
           S     K+E+   DL  W  +NG       +               + A+ D++A +   
Sbjct: 67  SVTFDGKREDYFPDLMKWASENGASVEGFEMVNFKEEG------FGLRATRDIKAEELFL 120

Query: 127 SVPNSLVVTLERVLGNETIAELLTTNKLSEL---ACLALYLMYEKKQGKKSFWLPYIREL 183
            VP  L++T+E    N  +  L + +++ +      LA +L+ E+     SFW PYI+ L
Sbjct: 121 WVPRKLLMTVESAK-NSVLGPLYSQDRILQAMGNIALAFHLLCERA-SPNSFWQPYIQTL 178

Query: 184 DRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQ 243
             +        ++PL + E E+ YL  +    ++  + +   R+Y     V         
Sbjct: 179 PSE-------YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQT----HP 227

Query: 244 QYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFALVPLGPPLLAYSSKCKAML 302
                   ++FT+E ++ A  +V +    +     +R   AL+PL       +       
Sbjct: 228 HANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGY 287

Query: 303 AAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEV 355
              DD  + V  + ++AGE I ++ G + N++ +I+ GF  ++N +DR+ +++
Sbjct: 288 NLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKL 340

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		355
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	100.0
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	100.0
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	100.0
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	99.18
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	99.13
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	99.09
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	97.8
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	97.3
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	97.19
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	97.08
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	97.07
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	96.76
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	96.65
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	96.64
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	96.59
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	96.39
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	96.26
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	96.12
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	96.11
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	95.99
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	95.98
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	95.88
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	95.48
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	95.07
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	93.55
3ihx_A		152	PR domain zinc finger protein 10; PRDM10, methyltr	91.8
3ray_A		237	PR domain-containing protein 11; structural genomi	90.12
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	89.4
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	86.01

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*	Back alignment and structure

Probab=100.00  E-value=4.2e-50  Score=403.54  Aligned_cols=260  Identities=23%  Similarity=0.340  Sum_probs=222.5

Q ss_pred             cchhcHHHHHHHHHhCCCCCC-CcEEeecCCCCCCCCceeeEEEccCCCCCCeEEEcCCCCccChhhhcCcchHHHhhcc
Q 018511           73 KKEEDLGDLKSWMHKNGLPPC-KVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTT  151 (355)
Q Consensus        73 ~~~~~~~~l~~Wl~~~G~~~~-~v~i~~~~~~~g~Grg~~Gl~A~~dI~~ge~li~IP~~~~ls~~~~~~~~~i~~ll~~  151 (355)
                      ...+.+++|++|++++|+.++ +|+|...+.  +.|   +||+|+++|++||+|++||++++||.+++.    +++++..
T Consensus        17 ~~~~~~~~ll~W~~~~G~~~~~~v~i~~~~~--~~G---~Gv~A~~dI~~ge~ll~IP~~~~ls~~~~~----~~~~l~~   87 (449)
T 3qxy_A           17 GDLDPVACFLSWCRRVGLELSPKVAVSRQGT--VAG---YGMVARESVQAGELLFVVPRAALLSQHTCS----IGGLLER   87 (449)
T ss_dssp             --CHHHHHHHHHHHHHTCEECTTEEEESSSC--SSS---SEEEESSCBCTTCEEEEEEGGGCBSTTTST----THHHHHH
T ss_pred             CCcHHHHHHHHHHHHCCCeeCCceEEEecCC--Cce---EEEEECCCCCCCCEEEEeCcHHhcChhhhh----HHHHHHH
Confidence            334689999999999999986 899886532  224   489999999999999999999999998863    3333332


Q ss_pred             -----CCCChhHHHHHHHHHHhhcCCCCCcHHHHHHhcccCCCCccccCcccccCHhHHh-ccCCCchHHHHHHHHHHHH
Q 018511          152 -----NKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELA-YLTGSPTKAEILERAEGIK  225 (355)
Q Consensus       152 -----~~l~~~~~Lal~Ll~E~~~g~~S~W~pYl~~LP~~~~~~~~~~~~Pl~Ws~~el~-~L~gt~l~~~~~~~~~~i~  225 (355)
                           ...++|..|+++|++|+. |++|+|+|||++||+..     ++++|++|+++|++ +|+||++...+.++++.++
T Consensus        88 ~~~~l~~~~~~~~L~l~Ll~E~~-g~~S~W~pYl~~LP~~~-----~~~~Pl~Ws~eEl~elL~gt~l~~~~~~~~~~i~  161 (449)
T 3qxy_A           88 ERVALQSQSGWVPLLLALLHELQ-APASRWRPYFALWPELG-----RLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIR  161 (449)
T ss_dssp             TTGGGCCSSSCHHHHHHHHHHHH-CTTCTTHHHHTTSCCGG-----GCCCGGGSCHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred             hhhhhccCCcHHHHHHHHHHHHh-CCCCchHHHHHhCCCcc-----CCCCccccCHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                 245788999999999994 89999999999999953     47899999999995 8999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhcCCCCCCCCCcchhhHHHhheeeecceeecccc-----ccccccccccCCCccccCCCCCce
Q 018511          226 REYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV-----SLARRFALVPLGPPLLAYSSKCKA  300 (355)
Q Consensus       226 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~t~e~f~wA~~~V~SRa~~~~~~-----~~~~~~~LvPl~D~l~NH~~~~~~  300 (355)
                      ++|.++..      ++++.+|..++...+|++.|.||+++|+||+|.++..     ......+|||++| |+||+.++++
T Consensus       162 ~~y~~~~~------~~~~~~p~~f~~~~~t~e~f~wA~~~v~SRsf~~~~~~~~~~~~~~~~~LvP~~D-~~NH~~~~~~  234 (449)
T 3qxy_A          162 SEYQSIVL------PFMEAHPDLFSLRVRSLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAAD-ILNHLANHNA  234 (449)
T ss_dssp             HHHHHTHH------HHHHHCTTTSCGGGCCHHHHHHHHHHHHHHCBCCCCC-----CCCCCCBBCTTGG-GCEECSSCSE
T ss_pred             HHHHHHHH------HHHHhCccccCcccCcHHHHHHHHHHHHHHhcccccCcccccccCCceeEeecHH-HhcCCCCCCe
Confidence            99999643      4566677667777899999999999999999986421     1235689999999 6899998888


Q ss_pred             EEEeeCCeEEEEEcCCCCCCCeeecccCCCChHhhhhhCCcccC--CCCCCeEEee
Q 018511          301 MLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDE--DNPYDRLVVE  354 (355)
Q Consensus       301 ~~~~~~~~~~l~a~r~i~~GeEI~i~YG~~~N~~LL~~YGFv~~--~Np~D~v~l~  354 (355)
                      .+..+++.+++++.++|++|||||++||+++|++||++|||+++  +||+|.+.|+
T Consensus       235 ~~~~~~~~~~~~a~~~i~~Geei~~~YG~~~n~~ll~~YGF~~~~~~N~~D~~~l~  290 (449)
T 3qxy_A          235 NLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEPYPDNTDDTADIQ  290 (449)
T ss_dssp             EEEECSSEEEEEESSCBCTTCEEEECCSSCCHHHHHHHHSCCCCTTSCTTCEEEEE
T ss_pred             EEEEeCCeEEEEECCCcCCCchhhccCCCCCHHHHHHhCCCCCCCCCCCCcEEEEe
Confidence            88888899999999999999999999999999999999999998  9999999986

PyMOL of 3qxy

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*	Back alignment and structure

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}	Back alignment and structure

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		355
d2h2ja2		261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	7e-36

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  128 bits (323), Expect = 7e-36
 Identities = 56/278 (20%), Positives = 100/278 (35%), Gaps = 32/278 (11%)

Query: 80  DLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERV 139
               W+ + G+   K  +K              + A +D+   D    VP  L +  + V
Sbjct: 7   TFWKWLQEEGVITAKTPVKASVVTEGLG-----LVALKDISRNDVILQVPKRLWINPDAV 61

Query: 140 LGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLL 199
             +E        ++L     + L+L+ E+   + S W  Y   L ++        +S + 
Sbjct: 62  AASEIGRVC---SELKPWLSVILFLIRERS-REDSVWKHYFGILPQE-------TDSTIY 110

Query: 200 WSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIF 259
           WSE EL  L GS      +   E +K E  +L+    +           +  +  T + F
Sbjct: 111 WSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNK-------RLFPDPVTLDDF 163

Query: 260 KQAFVAVQSCVVHLQKVSLARRFALVPLGP-------PLLAYSSKCKAMLAAVDDAVQLV 312
             AF  ++S      +        +  L            AY  K  A L + D    L 
Sbjct: 164 FWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLK 223

Query: 313 VDRPYKAGESIVVWCGPQ-PNSKLLINYGFVDED-NPY 348
                KAGE + +       N++L ++YGF++ + N +
Sbjct: 224 SPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH 261

PyMOL of d2h2ja2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		355
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	100.0
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	97.85
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	97.29
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	96.59
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	96.37
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	87.9

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=7e-44  Score=329.03  Aligned_cols=246  Identities=22%  Similarity=0.351  Sum_probs=202.2

Q ss_pred             hcHHHHHHHHHhCCCCCCCcEEeecCCCCCCCCceeeEEEccCCCCCCeEEEcCCCCccChhhhcCcchHHHhhccCCCC
Q 018511           76 EDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLS  155 (355)
Q Consensus        76 ~~~~~l~~Wl~~~G~~~~~v~i~~~~~~~g~Grg~~Gl~A~~dI~~ge~li~IP~~~~ls~~~~~~~~~i~~ll~~~~l~  155 (355)
                      ++.+.|++|++++|+..+++.+...+.  |.|   |||+|++||++||+|++||..++||.+++..+. +.+.+  ....
T Consensus         3 ~~~~~~~~W~~~~g~~~~~~~~~~~~~--~~G---rGl~AtrdI~~Ge~il~vP~~~~lt~~~~~~~~-~~~~~--~~~~   74 (261)
T d2h2ja2           3 PAVQTFWKWLQEEGVITAKTPVKASVV--TEG---LGLVALKDISRNDVILQVPKRLWINPDAVAASE-IGRVC--SELK   74 (261)
T ss_dssp             HHHHHHHHHHHTTTSSCSSCCCEEEEE--TTE---EEEECSSCCCTTCEEEEEEGGGCCSHHHHHTSG-GGTTT--TTSC
T ss_pred             hHHHHHHHHHHHCCCccCCceEeecCC--Cce---eEEEECCcCCCCCEEEEeChHHhccHHHhhhhH-HHHHH--hhcC
Confidence            678899999999999998887765433  233   699999999999999999999999998876543 23322  3456


Q ss_pred             hhHHHHHHHHHHhhcCCCCCcHHHHHHhcccCCCCccccCcccccCHhHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 018511          156 ELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVW  235 (355)
Q Consensus       156 ~~~~Lal~Ll~E~~~g~~S~W~pYl~~LP~~~~~~~~~~~~Pl~Ws~~el~~L~gt~l~~~~~~~~~~i~~~~~~l~~~~  235 (355)
                      .+..++++|++|+. +..|.|+||++.||+.       ..+|++|+.++++.|+++.+...+....+.++++|.++... 
T Consensus        75 ~~~~l~~~l~~e~~-~~~s~~~~y~~~lp~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-  145 (261)
T d2h2ja2          75 PWLSVILFLIRERS-REDSVWKHYFGILPQE-------TDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQE-  145 (261)
T ss_dssp             HHHHHHHHHHHHHH-CTTCTTHHHHTTSCSC-------CSCGGGCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHh-CCCCchhhhhhccccc-------cCCcccCCHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            88899999999984 8999999999999984       57899999999999999999999998888899999887642 


Q ss_pred             HHhhhhhhcCCCCCCCCCcchhhHHHhheeeecceeeccccccccccccccCCCccccCCCCCceEEE-----------e
Q 018511          236 FMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLA-----------A  304 (355)
Q Consensus       236 ~~~~~l~~~~~~~~~~~~~t~e~f~wA~~~V~SRa~~~~~~~~~~~~~LvPl~D~l~NH~~~~~~~~~-----------~  304 (355)
                           ++...+. .....++++.|.||+++|.||+|..+..   ...+|+|++| |+||+..+|+.+.           .
T Consensus       146 -----~~~~~~~-~~~~~~~~~~~~~a~~~v~sr~~~~~~~---~~~~l~P~~d-~~NHsc~pn~~~~~~~~~~~~~~~~  215 (261)
T d2h2ja2         146 -----IILPNKR-LFPDPVTLDDFFWAFGILRSRAFSRLRN---ENLVVVPMAD-LINHSAGVTTEDHAYEVKGAAGLFS  215 (261)
T ss_dssp             -----TTTTTTT-TCCSCCCHHHHHHHHHHHHHHSBCCC------CCBCCTTGG-GCEECSSCCSCCCCCC---------
T ss_pred             -----HHhhhhh-hccCccCHHHHHHHHHHhhccccccccc---ccccchhhhH-HhhcCCCCCcccccccccCcccccC
Confidence                 3333332 2345689999999999999999987653   4678999999 6899988776532           2


Q ss_pred             eCCeEEEEEcCCCCCCCeeecccCC-CChHhhhhhCCcccCC-CCC
Q 018511          305 VDDAVQLVVDRPYKAGESIVVWCGP-QPNSKLLINYGFVDED-NPY  348 (355)
Q Consensus       305 ~~~~~~l~a~r~i~~GeEI~i~YG~-~~N~~LL~~YGFv~~~-Np~  348 (355)
                      .++.++|+|.|+|++|||||++||+ ++|++||.+||||+++ |||
T Consensus       216 ~~~~~~l~A~r~I~~GEEI~isYG~~~~n~~ll~~yGFv~~~~n~~  261 (261)
T d2h2ja2         216 WDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH  261 (261)
T ss_dssp             --CEEEEECSSCCCTTSBCEECSCSSCCHHHHHHHSSCCCSCGGGC
T ss_pred             CCcEEEEEECCCCCCCCEEEEecCCCCCHHHHHHhCCCCCCCCCCC
Confidence            3578999999999999999999995 6999999999999886 987

PyMOL of d2h2ja2

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure