Citrus Sinensis ID: 018531

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350----
Protein Sequence
MGLQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQSLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQPVNEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKARSSNQASGRKRRESTISDGFPDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESESGSKAIDLNCKGLDQLNGPL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHccccccccccccccccHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccHccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccEEEccccccccccccc
Coil and Loop (DISEMBL)
mglqnqnmnlvlstdakprlkwtpeLHQRFVDAVnhlggpdkatpkslmrvmgipgltLYHLKSHLQkyrlgksqHVEACIDNKQVVEyketqsssdghvnrnisdgtLNQSLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMVsmgcpsssvselteagtsslkdFERKQIRSTICSmessltssessgrkeekqpvneigdtdtcksnkttpelqlmdihihpqdkpfkarssnqasgrkrrestisdgfpdEQQTAKRLATQNekyddqlrntglvgrfdlnsqyqnesesgskaidlnckgldqlngpl
Flexible Loop (DISEMBL)
mglqnqnmnlvlstdAKPRLKWTPELHQRFVDAvnhlggpdkatpksLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVEACIDNKQVVEYKetqsssdghvnrNISDGTLNQSLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMVSMGCPSSSVSELTeagtsslkdferkQIRSTICsmessltssessgrkeekqpvneigdtdtcksnKTTPELQLMDihihpqdkpfkarssnqasgrkrrestisdgfpdeqQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNesesgskaidlnckgldqlngpl
Low Complexity Region (SEG)
MGLQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQSLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRsticsmessltssessGRKEEKQPVNEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKARSSNQASGRKRRESTISDGFPDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESESGSKAIDLNCKGLDQLNGPL
Disordered region (IsUnstruct)
*******************LKWTPELHQRFVDAVNHLGG******KSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVEACIDNKQVVE************************LQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLK*******************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
********************KWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQK******************************************************************************GKYL******************************************************************************************************************************************************************************L*SQYQNESESGSKAIDLNCKGLDQLNG**
Disordered Region (DISEMBL)
MGLQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVEACIDNKQVVEY*********HVNRNISDGTLNQSLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMV******************SLKDFERKQIRSTIC***********************IGDTDTCKSNKTTPELQLMDIHIHPQDK*********************DGFPDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQY********KAIDLNCKGLDQLNGPL
Disordered Region (DISPRO)
****************KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ************************************SLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLA********************************************************************************************PELQLMDIH*H*********************************************DDQLRNTGLVGRFDLNSQYQNESESGSKAIDLNCKGLDQLN***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQSLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQPVNEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKARSSNQASGRKRRESTISDGFPDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESESGSKAIDLNCKGLDQLNGPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	354	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	no	no	0.406	0.402	0.608	6e-47
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.409	0.351	0.464	2e-32
Q700D9	255	Putative Myb family trans	no	no	0.149	0.207	0.622	8e-14
Q9ZWJ9	664	Two-component response re	no	no	0.166	0.088	0.545	5e-12
Q93WJ9	403	Transcription repressor K	no	no	0.161	0.141	0.561	5e-12
Q9C616	388	Probable transcription fa	no	no	0.161	0.146	0.561	6e-12
Q941I2	322	Probable transcription fa	no	no	0.161	0.177	0.561	1e-11
Q940D0	690	Two-component response re	no	no	0.166	0.085	0.530	1e-11
Q9FJV5	276	Probable transcription fa	no	no	0.240	0.307	0.421	1e-11
Q0J235	532	Probable transcription fa	no	no	0.161	0.107	0.578	2e-11

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  188 bits (477), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/156 (60%), Positives = 120/156 (76%), Gaps = 12/156 (7%)

Query: 10  LVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69
           LVL+TD KPRL+WT ELH+RFVDAV  LGGPDKATPK++MRVMG+ GLTLYHLKSHLQK+
Sbjct: 27  LVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86

Query: 70  RLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNI--SDGTLNQSLQIAQALQVQMEVQR 127
           RLGK  H E    +      KE   +S   + RN+  S G +++++      ++QMEVQR
Sbjct: 87  RLGKQPHKEYGDHST-----KEGSRASAMDIQRNVASSSGMMSRNMN-----EMQMEVQR 136

Query: 128 KLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAG 163
           +LHEQ+EVQRHLQLRIEAQGKY+QS+L++A +TLAG
Sbjct: 137 RLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLAG 172

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/153 (46%), Positives = 108/153 (70%), Gaps = 8/153 (5%)

Query: 16  AKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ 75
           +K R++WTPELH+ FV+AVN LGG ++ATPK++++++  PGLT+YH+KSHLQKYR  + +
Sbjct: 230 SKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYK 289

Query: 76  HVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQSLQIAQALQVQMEVQRKLHEQIEV 135
              + +      E +E + +S      +I    +  S++I QAL++QMEVQ++LHEQ+E+
Sbjct: 290 PETSEVTG----EPQEKKMTSI----EDIKSLDMKTSVEITQALRLQMEVQKRLHEQLEI 341

Query: 136 QRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSS 168
           QR LQL+IE QG+YLQ + +K Q+     SSSS
Sbjct: 342 QRSLQLQIEKQGRYLQMMFEKQQKIQDNKSSSS 374

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query: 18 PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70
          PRL+WTPELH+ FV AV+ LGG  KATPK ++++M + GLT+ H+KSHLQ YR
Sbjct: 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 7/66 (10%)

Query: 17  KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL----- 71
           KPR+ W+ ELHQ+FV AVN LG  DKA PK ++ +M +PGLT  ++ SHLQKYR+     
Sbjct: 216 KPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRL 274

Query: 72  -GKSQH 76
            G SQH
Sbjct: 275 GGVSQH 280

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 18  PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74
           PR++WT  LH RFV AV  LGG ++ATPKS++ +M +  LTL H+KSHLQ YR  K+
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 276

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 18  PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74
           PR++WT  LH RFV AV  LGG ++ATPKS++ +M +  LTL H+KSHLQ YR  K+
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 270

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query: 18  PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74
           PR++WT  LH  FV AV  LGG ++ATPKS++ +M +  LTL H+KSHLQ YR  KS
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKS 221

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 7/66 (10%)

Query: 17  KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL----- 71
           KPR+ W+ ELHQ+FV AVN LG  +KA PK ++ +M +PGLT  ++ SHLQKYR+     
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRL 295

Query: 72  -GKSQH 76
            G SQH
Sbjct: 296 GGVSQH 301

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 10/95 (10%)

Query: 18  PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHV 77
           PR++WT  LH  FV AV  LGG ++ATPKS++ +M +  LTL H+KSHLQ YR  K    
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK---- 161

Query: 78  EACID----NKQVVEYKETQSSSDGHVNRNISDGT 108
             C D     +  VE +  Q   D + N    +GT
Sbjct: 162 --CTDKGSPGEGKVEKEAEQRIEDNNNNEEADEGT 194

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 18  PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74
           PR++WT  LH RFV AV  LGG ++ATPKS++ +M +  LTL H+KSHLQ YR  KS
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKS 381

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
359473357	684	PREDICTED: uncharacterized protein LOC10	0.946	0.489	0.697	1e-117
296086358	296	unnamed protein product [Vitis vinifera]	0.805	0.962	0.727	1e-102
224109002	338	predicted protein [Populus trichocarpa]	0.878	0.920	0.649	1e-101
356502547	351	PREDICTED: uncharacterized protein LOC10	0.935	0.943	0.634	1e-100
356498314	339	PREDICTED: uncharacterized protein LOC10	0.918	0.958	0.627	6e-99
388522385	344	unknown [Lotus japonicus]	0.932	0.959	0.601	5e-97
255562888	361	transcription factor, putative [Ricinus	0.920	0.903	0.624	2e-96
224101365	296	predicted protein [Populus trichocarpa]	0.836	1.0	0.659	8e-96
356577381	334	PREDICTED: uncharacterized protein LOC10	0.901	0.955	0.601	5e-86
356521672	331	PREDICTED: uncharacterized protein LOC10	0.901	0.963	0.585	1e-84

>gi|359473357|ref|XP_002269530.2| PREDICTED: uncharacterized protein LOC100255052 [Vitis vinifera]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/347 (69%), Positives = 272/347 (78%), Gaps = 12/347 (3%)

Query: 3   LQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHL 62
           +QNQ+M+LVLSTDAKPRLKWTPELH RFV+AV HLGGPDKATPK+LMRVMG+PGLTLYHL
Sbjct: 345 MQNQDMSLVLSTDAKPRLKWTPELHHRFVEAVAHLGGPDKATPKTLMRVMGVPGLTLYHL 404

Query: 63  KSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGT---LNQSLQIAQAL 119
           KSHLQKYRLGKSQ  E   DN Q  +Y E Q+  + H +R   DGT   +N+SLQIAQAL
Sbjct: 405 KSHLQKYRLGKSQQAETFSDNNQE-DYCENQNR-EIHFDRETGDGTQNPINESLQIAQAL 462

Query: 120 QVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELS 179
           QVQ+EVQRKLHE IEVQRHLQLRIEAQGKYLQSVLKKAQETLAGY+SSS GVELAKAEL+
Sbjct: 463 QVQLEVQRKLHEHIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYNSSSVGVELAKAELT 522

Query: 180 QLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQPV 239
           QLVS+   GCPSSS SELTE G S LKD ERK +R T CS+ESSLTSSESSGRKEEKQP 
Sbjct: 523 QLVSIFDTGCPSSSFSELTETGGSGLKDKERKPMRGTGCSLESSLTSSESSGRKEEKQPK 582

Query: 240 NEIGDTDTCKSNKTTPELQLMDIHIHPQD-KPFKARSSNQASGRKRRESTISDGFPDEQQ 298
           NE G+T+ C S   T    LM+  IHP D + +K+ SSNQASGRKR  STISDG   EQ 
Sbjct: 583 NENGNTNKCTSMAPT----LME--IHPGDSQAWKSGSSNQASGRKRNGSTISDGNCVEQP 636

Query: 299 TAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESESGSKAIDLNCK 345
           + KR  T   K  D+LR  GL+   DLN+QYQ + +S  KAIDLNCK
Sbjct: 637 SGKRSPTYAGKTGDRLRKLGLLETLDLNTQYQIDIDSAPKAIDLNCK 683

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086358|emb|CBI31947.3| unnamed protein product [Vitis vinifera]

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/297 (72%), Positives = 239/297 (80%), Gaps = 12/297 (4%)

Query: 8   MNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQ 67
           M+LVLSTDAKPRLKWTPELH RFV+AV HLGGPDKATPK+LMRVMG+PGLTLYHLKSHLQ
Sbjct: 1   MSLVLSTDAKPRLKWTPELHHRFVEAVAHLGGPDKATPKTLMRVMGVPGLTLYHLKSHLQ 60

Query: 68  KYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGT---LNQSLQIAQALQVQME 124
           KYRLGKSQ  E   DN Q  +Y E Q+  + H +R   DGT   +N+SLQIAQALQVQ+E
Sbjct: 61  KYRLGKSQQAETFSDNNQE-DYCENQNR-EIHFDRETGDGTQNPINESLQIAQALQVQLE 118

Query: 125 VQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSM 184
           VQRKLHE IEVQRHLQLRIEAQGKYLQSVLKKAQETLAGY+SSS GVELAKAEL+QLVS+
Sbjct: 119 VQRKLHEHIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYNSSSVGVELAKAELTQLVSI 178

Query: 185 VSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQPVNEIGD 244
              GCPSSS SELTE G S LKD ERK +R T CS+ESSLTSSESSGRKEEKQP NE G+
Sbjct: 179 FDTGCPSSSFSELTETGGSGLKDKERKPMRGTGCSLESSLTSSESSGRKEEKQPKNENGN 238

Query: 245 TDTCKSNKTTPELQLMDIHIHPQD-KPFKARSSNQASGRKRRESTISDGFPDEQQTA 300
           T+ C S   T    LM+  IHP D + +K+ SSNQASGRKR  STISDG   EQ +A
Sbjct: 239 TNKCTSMAPT----LME--IHPGDSQAWKSGSSNQASGRKRNGSTISDGNCVEQPSA 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109002|ref|XP_002315046.1| predicted protein [Populus trichocarpa] gi|222864086|gb|EEF01217.1| predicted protein [Populus trichocarpa]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/354 (64%), Positives = 252/354 (71%), Gaps = 43/354 (12%)

Query: 1   MGLQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLY 60
           MGL++QNMNLVLSTD KPRLKWT ELHQRFV+AVN LGG D+ATPKSLMRVM IPGLTLY
Sbjct: 1   MGLRHQNMNLVLSTDGKPRLKWTQELHQRFVEAVNQLGGADRATPKSLMRVMEIPGLTLY 60

Query: 61  HLKSHLQ-----------KYRLGKSQHVEACIDNKQ----VVEYKETQSSSDGHVNRN-- 103
           HLKSHLQ           KYRLGKSQ     I+N Q    V + KE QSS D H   +  
Sbjct: 61  HLKSHLQAILFRMIRSIYKYRLGKSQQSLISIENNQEVLFVADAKEIQSSDD-HFQESAF 119

Query: 104 -------ISDGT---LNQSLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSV 153
                   SDG    +N S QIAQALQ+QMEV+RKLHEQIEVQRHLQLRIEAQGKYLQSV
Sbjct: 120 IQSSGGICSDGNQHPINGSFQIAQALQMQMEVKRKLHEQIEVQRHLQLRIEAQGKYLQSV 179

Query: 154 LKKAQETLAGYSSSSAGVELAKAELSQLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQI 213
           LKKAQETLAGY+S S GVELAKAELS+LVSM + GCPSSS+S+LTE G SSL+D ER Q 
Sbjct: 180 LKKAQETLAGYNSYSMGVELAKAELSRLVSMANSGCPSSSISDLTETGGSSLRDMERTQT 239

Query: 214 RSTICSMESSLTSSESSGRKEEKQPVNEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKA 273
           RS +CSMESSLTSSESSGRKE+ Q  NEI DT+  KSN  + EL LMD  IHPQD P   
Sbjct: 240 RSAVCSMESSLTSSESSGRKEDMQQKNEIHDTE--KSNTASVELSLMD--IHPQDNPLNT 295

Query: 274 RSSNQASGRKRRESTISDGFPDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLNS 327
            SSNQ  G+KR    ISDG   EQ  A RL     K  DQL     +G FDLNS
Sbjct: 296 CSSNQ--GKKRSGRIISDGVSVEQPLASRL-----KNGDQLS----LGMFDLNS 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502547|ref|XP_003520080.1| PREDICTED: uncharacterized protein LOC100787178 [Glycine max]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/350 (63%), Positives = 261/350 (74%), Gaps = 19/350 (5%)

Query: 3   LQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHL 62
           +QNQ M+ VLSTD+KPRLKWTPELH+RF++A N LGG DKATPKSLMRVMGIPGLTLYHL
Sbjct: 6   MQNQTMHFVLSTDSKPRLKWTPELHRRFIEATNQLGGEDKATPKSLMRVMGIPGLTLYHL 65

Query: 63  KSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQ---SLQIAQAL 119
           KSHLQK+RLGKSQ +E C DNKQ  +Y ET+SSSDGH +R IS G  NQ   ++QIAQAL
Sbjct: 66  KSHLQKFRLGKSQQLETCSDNKQE-DYIETKSSSDGHCSREISLGAQNQITENMQIAQAL 124

Query: 120 QVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELS 179
           Q+QMEVQRKL+EQIEVQ+HLQLRIEAQGKYLQSVLKKAQE LAGY+SS  G+EL KAELS
Sbjct: 125 QMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALAGYNSSPVGIELTKAELS 184

Query: 180 QLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQPV 239
           QLV++++  CPSS +SELTE    SL   ERK+ R T+CS+ESSLTSSESSGRKEEKQP+
Sbjct: 185 QLVTIINDACPSSPISELTETRGLSLSCGERKRDRGTMCSLESSLTSSESSGRKEEKQPM 244

Query: 240 NEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFK-ARSSNQASGRKRR-ESTISD--GFPD 295
            EI +  +  SN  + EL LM+IH   +DK      SSN+ SGRKR   +T SD      
Sbjct: 245 EEIVEFKS--SNNVSFELPLMEIHT--EDKASNGGLSSNEGSGRKRSLAATESDDGSCVV 300

Query: 296 EQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESES-GSKAIDLNC 344
           EQ   KR        +  LR   L    DLNSQ Q++ +S GSK +DLNC
Sbjct: 301 EQPCGKRCG------NKLLRKVKLSEMLDLNSQCQSDMDSTGSKTLDLNC 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498314|ref|XP_003517998.1| PREDICTED: uncharacterized protein LOC100784670 [Glycine max]

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 216/344 (62%), Positives = 252/344 (73%), Gaps = 19/344 (5%)

Query: 8   MNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQ 67
           M+ VLSTD+KPRLKWTPELH+RF++A N LGG DKATPKSLMRVMGIPGLTLYHLKSHLQ
Sbjct: 1   MHFVLSTDSKPRLKWTPELHRRFIEATNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQ 60

Query: 68  KYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQ---SLQIAQALQVQME 124
           KYRLGKSQ +E C DNKQ  +Y ET+SSSDGH +R IS G  NQ   ++QIAQALQ+QME
Sbjct: 61  KYRLGKSQELETCSDNKQE-DYIETKSSSDGHCSREISIGAQNQLTENMQIAQALQMQME 119

Query: 125 VQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSM 184
           VQRKLHEQIEVQ+HLQLRIEAQGKYLQSVLKKAQE LAGY+SS  G+EL KAELSQLV++
Sbjct: 120 VQRKLHEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALAGYNSSPVGIELTKAELSQLVTI 179

Query: 185 VSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQPVNEIGD 244
           ++  CPSS +SELTE    SL   ERK+ R T+CS+ESSLTSSESSGRKEEKQP+ EI +
Sbjct: 180 INNACPSSPISELTETRGLSLSCGERKRDRGTMCSLESSLTSSESSGRKEEKQPMEEIVE 239

Query: 245 TDTCKSNKTTPELQLMDIHIHPQDKPFKARSSNQASGRKRRESTI--SDG-FPDEQQTAK 301
             +         LQL  + I  +DK     SSN+ASGRKR  +     DG    EQ   K
Sbjct: 240 FKS----SINVSLQLPLMEILTEDKASNGGSSNEASGRKRSATAAESDDGSCVVEQPCGK 295

Query: 302 RLATQNEKYDDQLRNTGLVGRFDLNSQYQNESES-GSKAIDLNC 344
           R         ++LR   L    DLNSQ Q++ +S  SK +DLNC
Sbjct: 296 RCG-------NKLRKAKLSEMLDLNSQCQSDMDSTSSKTLDLNC 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522385|gb|AFK49254.1| unknown [Lotus japonicus]

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 211/351 (60%), Positives = 258/351 (73%), Gaps = 21/351 (5%)

Query: 1   MGLQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLY 60
           MGLQNQ+++ VLSTDAKPRLKWTPELHQRF++A N LGG +KATPK+LMRVMGIPGLTLY
Sbjct: 1   MGLQNQSVHFVLSTDAKPRLKWTPELHQRFIEATNQLGGAEKATPKNLMRVMGIPGLTLY 60

Query: 61  HLKSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQ---SLQIAQ 117
           HLKSHLQKYRLGKSQ +E C D KQ  +Y     SSD H +R IS G  NQ   +LQIA+
Sbjct: 61  HLKSHLQKYRLGKSQVLETCSDGKQEDDYDTETKSSDDHCSREISFGAQNQNTENLQIAE 120

Query: 118 ALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSS-AGVELAKA 176
           ALQ+QMEVQRKL+EQIEVQ+HLQLRIEAQGKYLQSVLKKAQE L+GY+++S  G+EL K+
Sbjct: 121 ALQMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALSGYNNTSPVGIELTKS 180

Query: 177 ELSQLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEK 236
           ELSQLV+M++  CP+S  SELTE    SL   +RK+ R T+CS+ESSLTSSESSGR+EEK
Sbjct: 181 ELSQLVTMINHACPNSPTSELTETRGLSLNCGQRKRDRGTMCSLESSLTSSESSGRREEK 240

Query: 237 QPV-NEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKARSSNQASGRKRRESTISDGFPD 295
           QP+  EIGD    K++ T P L+L  + +H +DK     SS++A+GRKR  +T  DG   
Sbjct: 241 QPMEEEIGDF---KNSNTIP-LELTLLTVHHEDKASNGDSSSEANGRKRSAATKFDGSSA 296

Query: 296 EQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESESGSK--AIDLNC 344
           EQ   KR +          R   L    DLNSQ +++ +S S   A+DLNC
Sbjct: 297 EQPPGKRCS----------RKPKLSEMLDLNSQCESDMDSTSSKTALDLNC 337

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562888|ref|XP_002522449.1| transcription factor, putative [Ricinus communis] gi|223538334|gb|EEF39941.1| transcription factor, putative [Ricinus communis]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 234/375 (62%), Positives = 270/375 (72%), Gaps = 49/375 (13%)

Query: 3   LQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHL 62
           LQNQNMNLVLSTDAKPRLKWTPELHQRFV+AVN LGG DKATPKSLMRVMGIPGLTLYHL
Sbjct: 6   LQNQNMNLVLSTDAKPRLKWTPELHQRFVEAVNQLGGADKATPKSLMRVMGIPGLTLYHL 65

Query: 63  KSHLQKYRLGKSQHVE----------ACIDNKQVVEYKETQSSS---DGHVNRNISDGTL 109
           KSHLQKYRLGKSQ +           A I+NKQ  +YKE QS++      +   I + T 
Sbjct: 66  KSHLQKYRLGKSQLLHSESPSQSQSQASIENKQ-EDYKEIQSTNCELKAGIAEEIQNPT- 123

Query: 110 NQSLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSA 169
           N+S QIAQALQ+QMEVQRKLHEQIEVQRHLQLRIEAQGKYL+SVLKKAQETL+GY+ SSA
Sbjct: 124 NESFQIAQALQMQMEVQRKLHEQIEVQRHLQLRIEAQGKYLRSVLKKAQETLSGYNPSSA 183

Query: 170 -GVELAKAELSQLVSMVSMGCPSSSVSELTEAGTSSLKD-FERKQI--RSTICSMESSLT 225
            G+E+AKAELS+LVSMV+ GC SSS+SELTE G S L D  ++ Q+  R T+CS ESSLT
Sbjct: 184 MGIEIAKAELSRLVSMVNTGCSSSSISELTEIGNSILNDTTDKNQMIRRGTVCSAESSLT 243

Query: 226 SSESSGRKEEK-QPVNEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKA----------R 274
           SSESSGRKE+  Q  NEIG T+  KS  T+ EL LMD   H QDK +            +
Sbjct: 244 SSESSGRKEDDMQQKNEIGATN--KSITTSLELPLMD--AHRQDKSWNNNNNNHNNNTYQ 299

Query: 275 SSNQASGRKRRESTI-SDGFPDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNES 333
            +NQA  +KR  +TI SDG   +Q  AKR      +  +QLR       FDLNSQYQ + 
Sbjct: 300 PTNQA--KKRSSTTISSDGICVQQPIAKR-----SRNGEQLR------IFDLNSQYQIDF 346

Query: 334 ESGS-KAIDLNCKGL 347
           E GS +AIDLNC+G 
Sbjct: 347 EPGSTRAIDLNCQGF 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101365|ref|XP_002312250.1| predicted protein [Populus trichocarpa] gi|222852070|gb|EEE89617.1| predicted protein [Populus trichocarpa]

 Score =  356 bits (914), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 211/320 (65%), Positives = 233/320 (72%), Gaps = 24/320 (7%)

Query: 8   MNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQ 67
           MNLVLSTDAKPRLKWT ELHQRFV+AVN LGG DKATPKSLMRVMGIPGLTLYHLKSHLQ
Sbjct: 1   MNLVLSTDAKPRLKWTQELHQRFVEAVNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQ 60

Query: 68  KYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQSLQIAQALQVQMEVQR 127
            + L   Q +  C        Y   +      +         N+S QIAQALQ+QMEVQR
Sbjct: 61  AFSLQNDQ-INLC--------YYNAEKQDCDFIFLFTQSAMFNRSFQIAQALQMQMEVQR 111

Query: 128 KLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMVSM 187
           KLHEQIEVQRHLQLRIEAQGKYLQ+VLKKAQETLAGY+SSS G+ELAKAEL +LVSMV+ 
Sbjct: 112 KLHEQIEVQRHLQLRIEAQGKYLQTVLKKAQETLAGYNSSSMGIELAKAELCRLVSMVNS 171

Query: 188 GCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQPVNEIGDTDT 247
           GCPSSS+SELTE G S LKD ER Q+R+T+CSMESSLTSSESSGRKE+ Q  NEI DT+ 
Sbjct: 172 GCPSSSISELTETGGSILKDIERTQMRNTVCSMESSLTSSESSGRKEDMQKENEIHDTN- 230

Query: 248 CKSNKTTPELQLMDIHIHPQDKPFKARSSNQASGRKRRESTISDGFPDEQQTAKRLATQN 307
            KSN    EL LMD  IHPQ+      SSNQ  G+KR  S ISDG   EQ  A+RL    
Sbjct: 231 -KSNTAFVELPLMD--IHPQENLLDNDSSNQ--GKKRSGSIISDGVSVEQPLARRL---- 281

Query: 308 EKYDDQLRNTGLVGRFDLNS 327
            K  DQLR    +G FDLNS
Sbjct: 282 -KNGDQLR----LGTFDLNS 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577381|ref|XP_003556805.1| PREDICTED: uncharacterized protein LOC100805252 [Glycine max]

 Score =  323 bits (829), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 208/346 (60%), Positives = 245/346 (70%), Gaps = 27/346 (7%)

Query: 3   LQNQNM-NLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYH 61
           +QNQ+M  LVLSTDAKPRLKWTPELHQRF +A+N LGG +KATPKSLMRVMGIPGLTLYH
Sbjct: 6   VQNQSMMRLVLSTDAKPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYH 65

Query: 62  LKSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQ---SLQIAQA 118
           LKSHLQKYRLGKSQ +E C DNKQ   Y E Q+S DGH ++ IS GT NQ   SL+IA+A
Sbjct: 66  LKSHLQKYRLGKSQPLETCSDNKQE-GYSEIQNS-DGHCSKEISIGTQNQMTESLKIAEA 123

Query: 119 LQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAEL 178
           LQ+QMEVQRKL+EQIEVQ+HLQLRIEAQGKYLQSVL KA E LA +SSS+ GVELAK EL
Sbjct: 124 LQMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLTKAHEALARHSSSTTGVELAKFEL 183

Query: 179 SQLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRKEEKQP 238
           S LVS+++  CPSS +SELTE    SL   ERKQ R T+CS+ESSLTSSESS   E++  
Sbjct: 184 SLLVSIINNACPSSPISELTETRGLSLNCGERKQDRGTMCSLESSLTSSESS---EQQHI 240

Query: 239 VNEIGDTDTCKSNKTTPELQLMDIHIHPQD-KPFKARSSNQASGRKRRESTISDGFPDEQ 297
           ++E  +    K +  + EL L  I IHP + K FK  +S    GRKR   T SD   D+ 
Sbjct: 241 MDEAENPQ--KFDGVSVELPL--ISIHPAEVKAFKGDTS--VDGRKRSAETDSDHCVDQP 294

Query: 298 QTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESESGSKAIDLN 343
              K+           LR + +    DLNSQYQ + +S  K IDLN
Sbjct: 295 CGNKK-----------LRKSEVSQMLDLNSQYQRDIDSSVKEIDLN 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521672|ref|XP_003529477.1| PREDICTED: uncharacterized protein LOC100776601 [Glycine max]

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 205/350 (58%), Positives = 241/350 (68%), Gaps = 31/350 (8%)

Query: 1   MGLQN-QN---MNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPG 56
           M LQN QN   M LVLSTDAKPRLKWTPELHQRF +A+N LGG ++ATPKSLMRVMGIPG
Sbjct: 1   MDLQNVQNHSMMRLVLSTDAKPRLKWTPELHQRFTEAINQLGGAERATPKSLMRVMGIPG 60

Query: 57  LTLYHLKSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQ---SL 113
           LTLYHLKSHLQKYRLGKSQ +E C DNKQ   Y E Q+S DGH ++ IS GT NQ   SL
Sbjct: 61  LTLYHLKSHLQKYRLGKSQPLETCSDNKQQ-GYCEIQNS-DGHFSKEISIGTQNQMTESL 118

Query: 114 QIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVEL 173
           +IA+ALQ+QMEVQRKL+EQIEVQ+HLQ RIEAQGKYLQSVL KA E LA +SSS+ G+EL
Sbjct: 119 KIAEALQMQMEVQRKLNEQIEVQKHLQRRIEAQGKYLQSVLTKAHEALARHSSSTTGMEL 178

Query: 174 AKAELSQLVSMVSMGCPSSSVSELTEAGTSSLKDFERKQIRSTICSMESSLTSSESSGRK 233
           AKAEL QL S+++  CP S +SELTE    SL   ERKQ R T+CS+ESSLTSSESS + 
Sbjct: 179 AKAELYQLESIINNACPDSPLSELTETRGLSLNCGERKQDRGTMCSLESSLTSSESSEQH 238

Query: 234 EEKQPVNEIGDTDTCKSNKTTPELQLMDIHIHPQDKPFKARSSNQASGRKRRESTISDGF 293
              +  N        K N  + EL LM IH   +DK FK  +S+   GRKR  +T SD  
Sbjct: 239 TMDEAENPQ------KFNGVSVELPLMSIHPE-EDKAFKGDTSD---GRKRSAATDSDHC 288

Query: 294 PDEQQTAKRLATQNEKYDDQLRNTGLVGRFDLNSQYQNESESGSKAIDLN 343
            D            +   ++LR + +    DLN QYQ + +S  K IDLN
Sbjct: 289 VD------------QPCGNKLRKSEVSEMLDLNCQYQRDIDSSVKEIDLN 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.533	0.560	0.643	7.1e-61
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.536	0.482	0.613	8.8e-57
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.536	0.472	0.613	4.3e-54
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.550	0.661	0.533	4.7e-48
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.516	0.614	0.544	1.4e-46
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.423	0.418	0.598	2.4e-44
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.429	0.646	0.528	1.5e-37
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.387	0.479	0.547	3.5e-36
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.426	0.571	0.493	7.4e-34
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.539	0.462	0.392	8.5e-33

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 130/202 (64%), Positives = 158/202 (78%)

Query:     8 MNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQ 67
             M+LVLSTDAKPRLKWT +LH +F++AVN LGGP+KATPK LM+VM IPGLTLYHLKSHLQ
Sbjct:    25 MSLVLSTDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQ 84

Query:    68 KYRLGKSQHVEACIDNKQVV----EYKETQSSSDGH------VNRNISDGTLNQSLQIAQ 117
             KYRLGKS   +   DNK  V    E +E +S +D        V    S+   ++ LQI +
Sbjct:    85 KYRLGKSMKFD---DNKLEVSSASENQEVESKNDSRDLRGCSVTEENSNPAKDRGLQITE 141

Query:   118 ALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAE 177
             ALQ+QMEVQ+KLHEQIEVQRHLQ++IEAQGKYLQSVL KAQ+TLAGYSSS+ G++ A+ E
Sbjct:   142 ALQMQMEVQKKLHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQTLAGYSSSNLGMDFARTE 201

Query:   178 LSQLVSMVSMGCPSSSVSELTE 199
             LS+L SMV+ GCPS+S SELT+
Sbjct:   202 LSRLASMVNRGCPSTSFSELTQ 223

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 119/194 (61%), Positives = 149/194 (76%)

Query:    10 LVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69
             L+LSTDAKPRLKWTP+LH+RF++AVN LGG DKATPK++M+VMGIPGLTLYHLKSHLQKY
Sbjct:    38 LILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKY 97

Query:    70 RLGKSQHVEACID-NKQ--VVEYKETQSSSDGHVNRNISDGTL-NQSLQIAQALQVQMEV 125
             RL K+ + +A    NK   +   +E    +D   + N+S G   N++  I +ALQ+Q+EV
Sbjct:    98 RLSKNLNGQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPNKNSPIGEALQMQIEV 157

Query:   126 QRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMV 185
             QR+LHEQ+EVQRHLQLRIEAQGKYLQSVL+KAQETL   +  +AG+E AK +LS+LVS V
Sbjct:   158 QRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGAAGIEAAKVQLSELVSKV 217

Query:   186 SMGCPSSSVSELTE 199
             S   P+SS  E  E
Sbjct:   218 SAEYPNSSFLEPKE 231

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 119/194 (61%), Positives = 147/194 (75%)

Query:    10 LVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69
             L+LSTDAKPRLKWTP+LH+RFV+AVN LGG DKATPK++M+VMGIPGLTLYHLKSHLQKY
Sbjct:    38 LILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKY 97

Query:    70 RLGKSQHVEACID-NKQVVE--YKETQSSSDGHVNRNISDGTL-NQSLQIAQALQVQMEV 125
             RL K+ + +A    NK  V    +E     D   + ++S G   + +L I+ ALQ+Q+EV
Sbjct:    98 RLSKNLNGQANSSLNKTSVMTMVEENPPEVDESHSESLSIGPQPSMNLPISDALQMQIEV 157

Query:   126 QRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSMV 185
             QR+LHEQ+EVQRHLQLRIEAQGKYLQS+L+KAQETL   +  +AG+E  KA+LS+LVS V
Sbjct:   158 QRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGRQNLGAAGIEATKAQLSELVSKV 217

Query:   186 SMGCPSSSVSELTE 199
             S   P SS  E  E
Sbjct:   218 SADYPDSSFLEPKE 231

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 111/208 (53%), Positives = 147/208 (70%)

Query:    10 LVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69
             LVL+TD KPRL+WT ELH+RFVDAV  LGGPDKATPK++MR MG+ GLTLYHLKSHLQK+
Sbjct:    30 LVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKF 89

Query:    70 RLGKSQHVEACIDNKQ----VVEYKETQSSSDGHVNRNISDGTLNQSLQIAQALQVQMEV 125
             RLG+ Q  +  IDN +    V E ++T SSS   +   ++    N+S Q+ +AL+ QMEV
Sbjct:    90 RLGR-QSCKESIDNSKDVSCVAESQDTGSSSTSSLR--LAAQEQNESYQVTEALRAQMEV 146

Query:   126 QRKLHEQIE---VQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLV 182
             QR+LHEQ+E   VQR LQLRIEAQGKYLQS+L+KA + +   + + AG+E A+ ELS+L 
Sbjct:   147 QRRLHEQLEYTQVQRRLQLRIEAQGKYLQSILEKACKAIEEQAVAFAGLEAAREELSELA 206

Query:   183 SMVSM--GCP-SSSVSELTEAGTSSLKD 207
                S+  GC  ++S  + T+    SL +
Sbjct:   207 IKASITNGCQGTTSTFDTTKMMIPSLSE 234

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 104/191 (54%), Positives = 137/191 (71%)

Query:    10 LVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69
             LVL+TD KPRL+WT ELH+RFVDAV  LGGPDKATPK++MR MG+ GLTLYHLKSHLQK+
Sbjct:    34 LVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKF 93

Query:    70 RLGKSQHVEACIDNKQ---VVEYKETQSSSDGHVNRNISDGTLNQSLQIAQALQVQMEVQ 126
             RLG+    E+  ++K    V E ++T SSS   +   ++    N+  Q+ +AL+ QMEVQ
Sbjct:    94 RLGRQAGKESTENSKDASCVGESQDTGSSSTSSMR--MAQQEQNEGYQVTEALRAQMEVQ 151

Query:   127 RKLHEQIE---VQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVS 183
             R+LH+Q+E   VQR LQLRIEAQGKYLQS+L+KA +     +++ AG+E A+ ELS+L  
Sbjct:   152 RRLHDQLEYGQVQRRLQLRIEAQGKYLQSILEKACKAFDEQAATFAGLEAAREELSELAI 211

Query:   184 MVSMGCPSSSV 194
              VS     +SV
Sbjct:   212 KVSNSSQGTSV 222

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 97/162 (59%), Positives = 125/162 (77%)

Query:    10 LVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69
             LVL+TD KPRL+WT ELH+RFVDAV  LGGPDKATPK++MRVMG+ GLTLYHLKSHLQK+
Sbjct:    27 LVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86

Query:    70 RLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNI--SDGTLNQSLQIAQALQVQMEVQR 127
             RLGK  H E   D+      KE   +S   + RN+  S G +++++      ++QMEVQR
Sbjct:    87 RLGKQPHKEYG-DHST----KEGSRASAMDIQRNVASSSGMMSRNMN-----EMQMEVQR 136

Query:   128 KLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSA 169
             +LHEQ+EVQRHLQLRIEAQGKY+QS+L++A +TLAG + ++A
Sbjct:   137 RLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLAGENMAAA 178

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 83/157 (52%), Positives = 113/157 (71%)

Query:     5 NQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKS 64
             + +  LVL+TD KPRL+WT ELH+RFVDAV HLGGP+KATPK++MRVMG+ GLTLYHLKS
Sbjct:    11 DSSSGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKS 70

Query:    65 HLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQSLQIAQAL-QVQM 123
             HLQK+RLGK  H E    N  +   ++T  +S   + RN    T    L I + + ++QM
Sbjct:    71 HLQKFRLGKQPHKEHS-QNHSIC-IRDTNRASMLDLRRNAVFTT--SPLIIGRNMNEMQM 126

Query:   124 EVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQET 160
             EVQR++ E++ ++R +  RI AQGKY++S+L+KA ET
Sbjct:   127 EVQRRIEEEVVIERQVNQRIAAQGKYMESMLEKACET 163

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 81/148 (54%), Positives = 111/148 (75%)

Query:    16 AKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ 75
             +K RL+WT ELH+RFVDAV  LGGPD+ATPK ++RVMG+ GLT+YH+KSHLQKYRL K  
Sbjct:    14 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK-- 71

Query:    76 HVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQSLQIAQALQVQMEVQRKLHEQIEV 135
             ++    D+    E K+T     G +   + DG+    +QI +AL++QMEVQ++LHEQ+EV
Sbjct:    72 YLP---DSSS--EGKKTDKKESGDMLSGL-DGS--SGMQITEALKLQMEVQKRLHEQLEV 123

Query:   136 QRHLQLRIEAQGKYLQSVLKKAQETLAG 163
             QR LQLRIEAQGKYL+ ++++ Q+ L+G
Sbjct:   124 QRQLQLRIEAQGKYLKKIIEE-QQRLSG 150

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 78/158 (49%), Positives = 111/158 (70%)

Query:    11 VLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70
             +++ D KPRL+WT +LH RFVDAV  LGG DKATPKS++++MG+ GLTLYHLKSHLQKYR
Sbjct:     1 MMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYR 60

Query:    71 LGKSQHVEA--CIDNKQVV--EYKETQSSSDGHV-NRNISDGTLNQS--LQIAQALQVQM 123
             LG+ Q  +      NK+     Y    + S G + N +  D    QS  +  A+A++ Q+
Sbjct:    61 LGQQQGKKQNRTEQNKENAGSSYVHFDNCSQGGISNDSRFDNHQRQSGNVPFAEAMRHQV 120

Query:   124 EVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETL 161
             + Q++  EQ+EVQ+ LQ+R+EAQGKYL ++L+KAQ++L
Sbjct:   121 DAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSL 158

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 80/204 (39%), Positives = 131/204 (64%)

Query:     3 LQNQNMNLVLSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHL 62
             L  +N +  ++T +K R++WTPELH+ FV+AVN LGG ++ATPK++++++  PGLT+YH+
Sbjct:   218 LSGRNSSSSVAT-SKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHV 276

Query:    63 KSHLQKYRLGKSQHVEACIDNKQVVEYKETQSSSDGHVNRNISDGTLNQSLQIAQALQVQ 122
             KSHLQKYR  + +   + +  +   + K+  S  D      I    +  S++I QAL++Q
Sbjct:   277 KSHLQKYRTARYKPETSEVTGEP--QEKKMTSIED------IKSLDMKTSVEITQALRLQ 328

Query:   123 MEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLV 182
             MEVQ++LHEQ+E+QR LQL+IE QG+YLQ + +K Q+     SSSS   E +  + +   
Sbjct:   329 MEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQDNKSSSS---EASPKQCNGSF 385

Query:   183 SMVSMGCPSSSVSELTEAGTSSLK 206
             + V +G  + +  +  E+ ++S K
Sbjct:   386 AEVEVGLETLT-GDQNESASASRK 408

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24	0.691
3rd Layer	3.4.24.57	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	354
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	9e-23
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	2e-20
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	6e-10
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-07

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 89.4 bits (222), Expect = 9e-23
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query: 17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGK 73
          KPR+ WT +LH RF+ AV  LGGPD ATPK ++ +M + GLT   + SHLQKYRL +
Sbjct: 1  KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 82.7 bits (205), Expect = 2e-20
 Identities = 37/51 (72%), Positives = 48/51 (94%)

Query: 112 SLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLA 162
            +QI +AL++QMEVQR+LHEQ+EVQRHLQ+RIEAQGKYLQ +L+KAQ+TL+
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 60.2 bits (145), Expect = 6e-10
 Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 17  KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70
           K ++ WTPELH+RFV AV  LG  +KA P  ++ +MG+  LT +++ SHLQKYR
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70
          R  WTPE  +  ++AV   G  +      + + +  PG T    K+    Y 
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHL--PGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	354
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.92
PLN03162	526	golden-2 like transcription factor; Provisional	99.89
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.85
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.34
smart00426	68	TEA TEA domain.	89.47

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.92  E-value=1.3e-25  Score=167.34  Aligned_cols=51  Identities=75%  Similarity=1.067  Sum_probs=49.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Q 018531          112 SLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLA  162 (354)
Q Consensus       112 ~~qI~EALrmQmEVQrrLhEQLEVQRhLQLRIEAQGKYLQsiLEKAqe~La  162 (354)
                      +++|+||||+||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999999999999999999999999874

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.89  E-value=9.8e-24  Score=208.28  Aligned_cols=65  Identities=43%  Similarity=0.751  Sum_probs=60.2

Q ss_pred             cCCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhhhccccchhh
Q 018531           14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVEA   79 (354)
Q Consensus        14 t~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k~~~~~~   79 (354)
                      ..+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.+++....
T Consensus       232 g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~r  296 (526)
T PLN03162        232 GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAR  296 (526)
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccch
Confidence            3689999999999999999999999 7999999999999999999999999999999998754433

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.85  E-value=1e-21  Score=148.32  Aligned_cols=56  Identities=57%  Similarity=0.974  Sum_probs=54.5

Q ss_pred             CCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhhhc
Q 018531           17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG   72 (354)
Q Consensus        17 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~   72 (354)
                      |+|++||+|+|.+|++||+.||+.+.||||.|+++|++++||+.+|+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            79999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.34  E-value=0.0005  Score=49.10  Aligned_cols=48  Identities=29%  Similarity=0.405  Sum_probs=41.2

Q ss_pred             cccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhh
Q 018531           19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR   70 (354)
Q Consensus        19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYR   70 (354)
                      |..||++=+.+|++||.++|. .  .-+.|-..|+ .+-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999992 1  4789999998 8999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=89.47  E-value=0.41  Score=38.46  Aligned_cols=18  Identities=28%  Similarity=0.702  Sum_probs=16.5

Q ss_pred             cCChHHHHHHHHHHHHhC
Q 018531           21 KWTPELHQRFVDAVNHLG   38 (354)
Q Consensus        21 rWT~ELH~rFV~AV~qLG   38 (354)
                      +|.++|-..|++|+...-
T Consensus         5 vWp~~lE~Af~~aL~~~~   22 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP   22 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC
Confidence            799999999999999775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	354
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		6e-08

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG 72
          +   KPR+ WT ELH +F+ AV+HL G ++A PK ++ +M +  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	354
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	2e-24

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 93.8 bits (233), Expect = 2e-24
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG 72
          +   KPR+ WT ELH +F+ AV+HLG  ++A PK ++ +M +  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 73 KSQ 75
            +
Sbjct: 60 LKK 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	354
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.96
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	87.43
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	86.62
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	86.21
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	84.2
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	83.71
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	82.36
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	81.61
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	80.61

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.96  E-value=1.3e-29  Score=194.89  Aligned_cols=62  Identities=42%  Similarity=0.792  Sum_probs=58.9

Q ss_pred             ccCCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhhhcccc
Q 018531           13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ   75 (354)
Q Consensus        13 st~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k~~   75 (354)
                      ++++|||++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+...+
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999 799999999999999999999999999999998654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=87.43  E-value=1.4  Score=33.04  Aligned_cols=53  Identities=23%  Similarity=0.337  Sum_probs=42.0

Q ss_pred             CCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhhhcc
Q 018531           15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGK   73 (354)
Q Consensus        15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k   73 (354)
                      +.-.+-.||+|=++.|++||..+|-    .=..|-+.  ++|=|-.+|+.|.++|-...
T Consensus         5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence            3456778999999999999999993    33556665  47899999999999885443

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=86.62  E-value=0.53  Score=37.81  Aligned_cols=58  Identities=24%  Similarity=0.338  Sum_probs=37.2

Q ss_pred             CCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhh---h-C-----------C--CCccHHhHHhhhhhhhhccc
Q 018531           15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRV---M-G-----------I--PGLTLYHLKSHLQKYRLGKS   74 (354)
Q Consensus        15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~l---M-~-----------V--~gLT~~hVKSHLQKYRl~k~   74 (354)
                      |.+..-+|.++|-..|++|+...-=....+  -+|..   | |           .  +-=|+.+|.||||.-+..+.
T Consensus         2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~k--~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~   76 (82)
T 2hzd_A            2 DNDAEGVWSPDIEQSFQEALSIYPPCGRRK--IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS   76 (82)
T ss_dssp             CGGGSCCSCHHHHHHHHHHHHHSCSSSCCC--CCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred             CCCcCCcCCHHHHHHHHHHHHHcCCCCccc--eeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence            455677999999999999999775111222  22211   1 1           1  23477889999997765543

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.21  E-value=1.2  Score=33.48  Aligned_cols=56  Identities=16%  Similarity=0.270  Sum_probs=41.9

Q ss_pred             CCCCcccCChHHHHHHHHHHHHhCCCCCCCc---hhHHhhhCCCCccHHhHHhhhhhhhhcc
Q 018531           15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATP---KSLMRVMGIPGLTLYHLKSHLQKYRLGK   73 (354)
Q Consensus        15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtP---K~IL~lM~V~gLT~~hVKSHLQKYRl~k   73 (354)
                      +...+-.||+|=+.+|++||..+| .+...|   +.|-+.|  +|=|-.+|+.|.++|-...
T Consensus         4 p~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A            4 GSSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence            445566899999999999999999 222222   3444554  6899999999999996543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=84.20  E-value=0.73  Score=35.84  Aligned_cols=46  Identities=13%  Similarity=0.153  Sum_probs=38.5

Q ss_pred             CcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhh
Q 018531           18 PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY   69 (354)
Q Consensus        18 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKY   69 (354)
                      .+-.||+|=+.+|++||..+|+-    =+.|-+.|+  +=|..+++.|.++|
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v~--~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYKDD----WNKVSEHVG--SRTQDECILHFLRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHcC--CCCHHHHHHHHHHh
Confidence            36789999999999999999943    366777664  78999999999977

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=83.71  E-value=1.1  Score=32.59  Aligned_cols=52  Identities=21%  Similarity=0.247  Sum_probs=40.7

Q ss_pred             cCCCCcccCChHHHHHHHHHHHHhC-CCCCCCchhHHhhhCCCCccHHhHHhhhhhhhh
Q 018531           14 TDAKPRLKWTPELHQRFVDAVNHLG-GPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL   71 (354)
Q Consensus        14 t~~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl   71 (354)
                      ...-.|-.||+|=..+|++||..+| +-    =+.|-+.|  +|=|-.+++.|.++|-.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGN----WQDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTC----HHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCc----HHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            3455667899999999999999999 32    35666666  67899999999888744

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=82.36  E-value=1.9  Score=44.00  Aligned_cols=56  Identities=21%  Similarity=0.301  Sum_probs=45.5

Q ss_pred             CCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhhhccccc
Q 018531           15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQH   76 (354)
Q Consensus        15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k~~~   76 (354)
                      ..+..-+||++=|..|++||.+.|-    .=+.|-++++-  =|..+|++|.++||......
T Consensus       376 ~~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~ld  431 (482)
T 2xag_B          376 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFNID  431 (482)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTTHH
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhChH
Confidence            3456789999999999999999983    35677777665  49999999999998876543

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=81.61  E-value=2.2  Score=39.98  Aligned_cols=56  Identities=21%  Similarity=0.286  Sum_probs=45.8

Q ss_pred             ccCCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhhhccc
Q 018531           13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKS   74 (354)
Q Consensus        13 st~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k~   74 (354)
                      .+..+..-+||+|=++.|++|+...|--    =..|-++  |++=|..+|++|..+||....
T Consensus       127 e~~~k~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~--VgTKT~~QcKnfY~~~kKRln  182 (235)
T 2iw5_B          127 EVIQKCNARWTTEEQLLAVQAIRKYGRD----FQAISDV--IGNKSVVQVKNFFVNYRRRFN  182 (235)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHSSC----HHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred             CCCCccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence            4556778899999999999999999922    4566666  578999999999999986644

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=80.61  E-value=2.1  Score=32.89  Aligned_cols=51  Identities=14%  Similarity=0.311  Sum_probs=39.3

Q ss_pred             CCCcccCChHHHHHHHHHHHHhCCCCCCCchh---HHhhhCCCCccHHhHHhhhhhhhhc
Q 018531           16 AKPRLKWTPELHQRFVDAVNHLGGPDKATPKS---LMRVMGIPGLTLYHLKSHLQKYRLG   72 (354)
Q Consensus        16 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~V~gLT~~hVKSHLQKYRl~   72 (354)
                      ....-.||.|=+.+|+.|+..+++   -||.+   |-..|   |=|..+|+.|.+++.-.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence            344557999999999999999983   35654   55555   67999999998877544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	354
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	1e-22

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 87.7 bits (217), Expect = 1e-22
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG 72
          +   KPR+ WT ELH +F+ AV+HLG  ++A PK ++ +M +  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 73 KSQ 75
            +
Sbjct: 60 LKK 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	354
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	90.27
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	85.39

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=5.8e-27  Score=178.19  Aligned_cols=62  Identities=42%  Similarity=0.784  Sum_probs=58.3

Q ss_pred             ccCCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhhhcccc
Q 018531           13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ   75 (354)
Q Consensus        13 st~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k~~   75 (354)
                      |.++|||++||+|||++||+||++||+ ++||||.|+++|+|+|||+.||+|||||||+...+
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            568999999999999999999999985 89999999999999999999999999999998654

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.087  Score=37.01  Aligned_cols=48  Identities=21%  Similarity=0.352  Sum_probs=38.8

Q ss_pred             cccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhhhc
Q 018531           19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG   72 (354)
Q Consensus        19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~   72 (354)
                      ..+||+|=+..|++||...|.-    =..|-+.|  ++=|..+|++|.++|-..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~----W~~Ia~~~--~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRR----WTKISKLI--GSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSC----HHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcch----HHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999942    34565555  578999999999988544

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.39  E-value=0.8  Score=30.57  Aligned_cols=44  Identities=23%  Similarity=0.283  Sum_probs=35.1

Q ss_pred             cCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhh
Q 018531           21 KWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY   69 (354)
Q Consensus        21 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKY   69 (354)
                      .||.+=+.+|++||...| ..  -=+.|-+.|+  |=|..+++.|.++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~~--nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-FG--NWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-TT--CHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-Cc--cHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            499999999999999998 21  2356666665  56899999999887